Citrus Sinensis ID: 005132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710---
Protein Sequence
MYLHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRSPGNGAIPY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHcccccEEEcEEEEEEEEEEEEEEEccccccEEEEEEccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcEEEcccccEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEEEccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEcccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEcccccccccEEEEccccccEEEEEEEccccccccccEEEEEEcccccccccccEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcHHHHHHEEEEEEEccccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEcccHcccccccccEEEEEEEccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEccccHccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccccEEEEEEEccccEEEEEEEEcccccccccHccccEEEEEEEEccccEEEEEcccccccccHccccccccEEEcccccccccEEEEEEEccccccccccccccccccccccccccccccEcccccEEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEEEEEEccccccccEEEEEEEHHHccccccccEEEEccccccccEEEEEEEcccccccccccccccccccEEEEEEEEEccccHHccccccccEEEEEEccccEEEEEEEccccccEcEEEEEEccccEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEcccccccEEEEEEEEEcccccHcccccccccccHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEcccccccccccccccccc
Coil and Loop (DISEMBL)
MYLHLLLKKRLKHRKPRLIEKielqefslgstspclglhgtrwsssgdQRVMQlgfdwdanDISILLLAKLAKPLLGTAKIVINSLhikgdllvmpiLEGKAVLYsfvsipdvrigvafgsggsqslpatelpgvSNWLARLINETLVKTLveprrrcyslpavdlrkkAVGGIVYVRVISASKlsrsslrgspsrrqqnysadssleehyedkdlTTFVEIELEELtrrtdarpgsdprwdsMFNMVLHeetgtvrfnlyecipghvkydYLTSCEVKMKyvaddsttfwaigpdsgiiakhaefcgdevemtvpfegvnsgELTVRLVLKEwqfsdgshslnnfhsgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyvklqygkivqrtrtahspnhvwnqkfeldeigggeclmvkcyneeifgdenmgsarvnleglvegsvrdiwvplekvntgelRLQIEatrvddnegsrgqnigsgnGWIELVIVEARDLVAadlrgtsdpyvkvqygdlKKRTKVIFKTlnpqwhqtlefpddgspltlhvrdhnallasssigdcvveyqrlppnqmadkwiplqgvrkgEIHVLITRkvpeldkrtsidsdssstraHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIinsspsinrrspgngaipy
Flexible Loop (DISEMBL)
mylhlllkkrlkhrkprliekielqefslgstspCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLvktlveprrrcyslpavdlrkkavggIVYVRVIsasklsrsslrgspsrrqqnysadssleehyedkdlTTFVEIEleeltrrtdarpgsdprwDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyVKLQYGKIVQrtrtahspnhvwnQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLekvntgelrlqieatrvddnegsrgqnigsgngWIELVIVEARDLVAadlrgtsdpyvkvqygdlkkRTKVIFKTlnpqwhqtleFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADkwiplqgvrkgEIHVLitrkvpeldkrtsidsdssstrahkisgqMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEiinsspsinrrspgngaipy
Low Complexity Region (SEG)
MYlhlllkkrlkhrkprlIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIlllaklakpllgtakIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVrvisasklsrsslrgspsrrQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHsgsqqslsgssNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKrtsidsdssstrAHKISGQMKQMMVKFQSLIDDDNleelstalseletleDSQEEYMVQLETEQMLLLNKIKELGQEiinsspsinrrspGNGAIPY
Disordered region (IsUnstruct)
**LHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVIS***********************************TTFVEIEL****************WDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFS*****************************KINVTVVEG**********KCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR***********IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKV**************************************************************VQLETEQMLLLNKIKEL***********************
Disordered Region (DISOPRED)
*YLHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFS************************SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI*A**************GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPE***********************************************************************NKI**************************
Disordered Region (DISEMBL)
MYLHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL**************************EDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS*********SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDK****************SGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRSPGNGAIPY
Disordered Region (DISPRO)
MYLHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS***********************HYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEW**********************SSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINS****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIINSSPSINRRSPGNGAIPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	713	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.332	0.423	0.263	1e-18
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.332	0.416	0.273	3e-18
Q93XX4	751	C2 domain-containing prot	no	no	0.147	0.139	0.354	4e-13
O43374	803	Ras GTPase-activating pro	no	no	0.304	0.270	0.240	1e-11
C9J798	803	Putative Ras GTPase-activ	no	no	0.304	0.270	0.240	1e-11
O95294	804	RasGAP-activating-like pr	no	no	0.287	0.254	0.279	1e-11
Q9Z268	799	RasGAP-activating-like pr	no	no	0.287	0.256	0.279	3e-11
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.302	0.269	0.268	3e-11
Q6DN12	878	Multiple C2 and transmemb	no	no	0.375	0.305	0.235	2e-10
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.179	0.125	0.326	5e-10

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 48/285 (16%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH----VWNQKFELD-EIG 422
           + V +V+ K+L  KD  GK DP+ K+    + ++T+ + + N+    +WN+ FE   E  
Sbjct: 264 LEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDA 323

Query: 423 GGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLEK--------VNTGELR 473
             + L+V+ Y++E +   E +G A++ L  L  G V+D+W+ L K         N GE+ 
Sbjct: 324 STQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVH 383

Query: 474 LQI----------------------------EATRVDDNEGSRGQNIGSGNGWIELVIVE 505
           L++                              T  ++N  SR +      G + + ++ 
Sbjct: 384 LELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVIS 443

Query: 506 ARDLVAADLRGTSDPYV--KVQYGDLKKRTKVIFKTLNPQWHQTLEF-PDDG--SPLTLH 560
           A ++   DL G +DPYV   ++    K +T+V+  +LNP W+QT +F  +DG    L L 
Sbjct: 444 AEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLE 503

Query: 561 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           V DH+       IG C++   R+   +    W PL   + G++ +
Sbjct: 504 VWDHDT-FGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQL 547

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 56/293 (19%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTR----TAHSPNHVWNQKFE-LDEI 421
           K++V VV+ KDL  KD  GK DPY  +    +  RT+     ++S N +WN+ FE + E 
Sbjct: 265 KLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVED 324

Query: 422 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEK--------VNTGEL 472
              + L V+ +++E  G   + G+A+V L  LV G V+DIW+ L K         N G++
Sbjct: 325 VSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRGQV 384

Query: 473 RLQI-----------------------------------EATRVDDNEGSRGQNIGSGNG 497
           +L++                                   +AT +     S+ +++    G
Sbjct: 385 QLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKDVIV-RG 443

Query: 498 WIELVIVEARDLVAADLRGTSDPYVKV--QYGDLKKRTKVIFKTLNPQWHQTLEFPDDGS 555
            + + +V A DL A D  G +D +V +  +  + K +T+V+  +LNP W+QT +F  + +
Sbjct: 444 VLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDFVVEDA 503

Query: 556 ---PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
               LTL V DH+       IG  ++   R+       +W  L G + G++ V
Sbjct: 504 LHDLLTLEVWDHDK-FGKDKIGRVIMTLTRVMLEGEFQEWFELDGAKSGKLCV 555

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 558
           + EA DL  +DL G +DPYVK + G  + +TK+  KTL+P+WH+  + P    D  S L 
Sbjct: 288 VFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILN 347

Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
           + V D +  +   ++G+C V  +     Q  D W+ LQ ++ G +H+ IT
Sbjct: 348 IEVGDKDRFV-DDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

Arabidopsis thaliana (taxid: 3702)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           + + +VEGK+L  KD +G  DPY  VK+    I++      +    W +++++       
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI--WVPLEKVN-----TGELRLQIEA 478
            +     +E+    +++          +    +    W  L +V+      GE+ L++E 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEV 126

Query: 479 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 538
                  G+R   +          ++EARDL   D  GTSDP+V+V+Y    + T ++ K
Sbjct: 127 W-----PGARACRLRCS-------VLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKK 174

Query: 539 TLNPQWHQTLEFP-DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595
           +  P+W++T EF   +G+   L +   D + +  +  +G  V++ QRL   Q  + W  L
Sbjct: 175 SCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRL 234

Query: 596 Q 596
           Q
Sbjct: 235 Q 235

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           + + +VEGK+L  KD +G  DPY  VK+    I++      +    W +++++       
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI--WVPLEKVN-----TGELRLQIEA 478
            +     +E+    +++          +    +    W  L +V+      GE+ L++E 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEV 126

Query: 479 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 538
                  G+R   +          ++EARDL   D  GTSDP+V+V+Y    + T ++ K
Sbjct: 127 W-----PGARACRLRCS-------VLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKK 174

Query: 539 TLNPQWHQTLEFP-DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595
           +  P+W++T EF   +G+   L +   D + +  +  +G  V++ QRL   Q  + W  L
Sbjct: 175 SCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRL 234

Query: 596 Q 596
           Q
Sbjct: 235 Q 235

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|O95294|RASL1_HUMAN RasGAP-activating-like protein 1 OS=Homo sapiens GN=RASAL1 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 31/236 (13%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGE 425
           +NV VVEG+ L  KD SG  DPY  ++   ++V RT T   S    W +++ +       
Sbjct: 7   LNVRVVEGRALPAKDVSGSSDPYCLVKVDDEVVARTATVWRSLGPFWGEEYTVHLPLDFH 66

Query: 426 CLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPLEKVNT-----GELRLQIEA 478
            L     +E+  G D+ +G   ++ E +  +    D W+ L +V+      GE+ L ++ 
Sbjct: 67  QLAFYVLDEDTVGHDDIIGKISLSREAITADPRGIDSWINLSRVDPDAEVQGEICLSVQM 126

Query: 479 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 538
             ++D +G            +   +++ARDL   D+ GTSDP+ +V +G     T  I K
Sbjct: 127 --LEDGQGR----------CLRCHVLQARDLAPRDISGTSDPFARVFWGSQSLETSTIKK 174

Query: 539 TLNPQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 586
           T  P W + LE    P   SPL + + D + +  +  +G  +VE+     Q+ PP 
Sbjct: 175 TRFPHWDEVLELREMPGAPSPLRVELWDWDMVGKNDFLG--MVEFSPKTLQQKPPK 228

Probable inhibitory regulator of the Ras-cyclic AMP pathway.

Homo sapiens (taxid: 9606)

>sp|Q9Z268|RASL1_MOUSE RasGAP-activating-like protein 1 OS=Mus musculus GN=Rasal1 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 31/236 (13%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGE 425
           +++ VVEG+ L  KD SG  DPY  ++   ++V RT T   S +  W +++ +       
Sbjct: 7   LSIRVVEGRALPAKDVSGSSDPYCLVKVDDQVVARTATIWRSLSPFWGEEYTVHLPLDFH 66

Query: 426 CLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPLEKVN-----TGELRLQIEA 478
            L     +E+  G D+ +G   ++ E +  +    D W+ L +V+      GE+ L ++ 
Sbjct: 67  HLAFYVLDEDTVGHDDIIGKISLSKEAITADPRGIDSWINLSRVDPDAEVQGEVCLDVKL 126

Query: 479 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 538
                 E +RG+ +          + +ARDL   D+ GTSDP+ +V +G+    T  I K
Sbjct: 127 L-----EDARGRCL-------RCHVRQARDLAPRDISGTSDPFARVFWGNHSLETSTIKK 174

Query: 539 TLNPQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 586
           T  P W + LE    P   SPL + + D + +  +  +G  +VE+     Q+ PPN
Sbjct: 175 TRFPHWDEVLELREAPGTTSPLRVELWDWDMVGKNDFLG--MVEFTPQTLQQKPPN 228

Probable inhibitory regulator of the Ras-cyclic AMP pathway.

Mus musculus (taxid: 10090)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 26/242 (10%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           +++ +VEGK+L  KD +G  DPY  VK+    I++      +    W + +++       
Sbjct: 7   LSIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEDYQVHLPPTFH 66

Query: 426 CLMVKCYNEEIFG-DENMGSARVNLEGLVE------GSVRDIWV-PLEKVNTGELRLQIE 477
            +     +E+    D+ +G   +  + L        G    + V P E+V  GE+ L++E
Sbjct: 67  TVAFYVMDEDALSRDDVIGKVCLTRDALASHPKGFSGWTHLVEVDPNEEVQ-GEIHLRLE 125

Query: 478 ATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF 537
              V     SR          +   ++EARDL   D  G SDP+V+V Y    + T V+ 
Sbjct: 126 V--VPGVHASR----------LRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVK 173

Query: 538 KTLNPQWHQTLEFP-DDGSPLTLHVRDHNALLASSS--IGDCVVEYQRLPPNQMADKWIP 594
           K+  P+W++T +F  + G+   L V   +  L S +  +G   V  QRL   Q  + W  
Sbjct: 174 KSCYPRWNETFDFELEKGASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFR 233

Query: 595 LQ 596
           LQ
Sbjct: 234 LQ 235

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 138/310 (44%), Gaps = 42/310 (13%)

Query: 337 SDGSHSLNNFHSGSQ----QSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVK 392
           SD + S+ + H   Q    ++  G SN  S     + + + EG++L+ +D+ G  DPYVK
Sbjct: 161 SDLNASMTSQHFEEQSVPGEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVK 220

Query: 393 LQY-GKIVQRTRTAH-SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLE 450
            +  GK + +++  + + N VW++   L      + L VK Y+ ++   + MGSA V L 
Sbjct: 221 FKLNGKTLYKSKVIYKNLNPVWDEIVVLPIQSLDQKLRVKVYDRDLTTSDFMGSAFVILS 280

Query: 451 GLVEGSVRDIWVPLEKVNTGE---------LRLQIEA-----------TRVDDNEGSRGQ 490
            L      +  + LE  N+ E         L L ++             R+  ++ S  +
Sbjct: 281 DLELNRTTEHILKLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIR 340

Query: 491 NIGSG---------NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLN 541
           N+            NG I + ++E +++    +   ++ +V+++ GD + ++K + K+ N
Sbjct: 341 NLRLSESLKKNQLWNGIISITLLEGKNVSGGSM---TEMFVQLKLGDQRYKSKTLCKSAN 397

Query: 542 PQWHQTLE---FPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598
           PQW +  +   F D    L + V   +       +G C V+   LP  Q     +PL   
Sbjct: 398 PQWQEQFDFHYFSDRMGILDIEVWGKDNKKHEERLGTCKVDISALPLKQANCLELPLDSC 457

Query: 599 RKGEIHVLIT 608
             G + +L+T
Sbjct: 458 L-GALLMLVT 466

Homo sapiens (taxid: 9606)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSP 556
           +++ +VEAR+L A DL G SDPYV++Q G  + RTKV+ K LNP+W +   F   D    
Sbjct: 3   LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62

Query: 557 LTLHVRDHNALLASSSIGDCVVEYQRL--PPNQ-MADKWIPLQGVRKGE--------IHV 605
           L + V D +       +G   V    +    NQ +   W PL   +KG         + +
Sbjct: 63  LVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKGSKKDCGEILLKI 122

Query: 606 LITRKVPELDKRTSIDSDSSS 626
             ++K   LD  +S D  S+S
Sbjct: 123 CFSQKNSVLDLTSSGDQTSAS 143

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	713
255582757	829	synaptotagmin, putative [Ricinus communi	0.966	0.831	0.744	0.0
449439403	817	PREDICTED: extended synaptotagmin-1-like	0.967	0.844	0.736	0.0
359491448	822	PREDICTED: uncharacterized protein LOC10	0.976	0.846	0.752	0.0
224135377	825	plant synaptotagmin [Populus trichocarpa	0.967	0.836	0.753	0.0
297734213	815	unnamed protein product [Vitis vinifera]	0.966	0.845	0.747	0.0
224118810	819	plant synaptotagmin [Populus trichocarpa	0.957	0.833	0.755	0.0
357500377	828	Plant synaptotagmin [Medicago truncatula	0.967	0.833	0.719	0.0
449441149	838	PREDICTED: synaptotagmin-4-like [Cucumis	0.985	0.838	0.708	0.0
147815879	783	hypothetical protein VITISV_035295 [Viti	0.899	0.818	0.746	0.0
356522767	826	PREDICTED: uncharacterized protein LOC10	0.977	0.843	0.716	0.0

>gi|255582757|ref|XP_002532155.1| synaptotagmin, putative [Ricinus communis] gi|223528165|gb|EEF30229.1| synaptotagmin, putative [Ricinus communis]

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/690 (74%), Positives = 610/690 (88%), Gaps = 1/690 (0%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLK RK +LIE++ELQEFSLGS  PC GL GT WS+SGDQR M++GFDWD +DISI
Sbjct: 128 MVEKRLKQRKSKLIERVELQEFSLGSFPPCFGLQGTHWSTSGDQRFMRIGFDWDTSDISI 187

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           +LLAKLAKP+ GTA+IVINSLHIKGDLL+MP+++G+A+LYSF+S P+VRIGVAFGSGGSQ
Sbjct: 188 MLLAKLAKPM-GTARIVINSLHIKGDLLLMPVVDGRAILYSFISAPEVRIGVAFGSGGSQ 246

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL +++ +TLVKT+VEPRRRCYSLPAVDLRKKAVGG+++V VISA KL
Sbjct: 247 SLPATELPGVSSWLVKILTDTLVKTMVEPRRRCYSLPAVDLRKKAVGGVIHVTVISARKL 306

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
             S  RGSPSR+QQN S + S EEH++DKDL TFVE+ELE+LTRRT+ RPGS PRWDS F
Sbjct: 307 CTSPFRGSPSRKQQNCSVNCSSEEHFDDKDLQTFVEVELEQLTRRTNVRPGSSPRWDSTF 366

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NMVLHEETG +RF+LY C P +VK+DYL SCE+K+KYVADDST FWA+G +SG+IA+ AE
Sbjct: 367 NMVLHEETGILRFHLYNCTPNNVKFDYLASCEIKLKYVADDSTMFWAVGHNSGVIAELAE 426

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
            CG EVEM VPFEGVNSGEL V+LVLKEWQFSDGSHS N F   S++S++G SN +SRTG
Sbjct: 427 ICGKEVEMAVPFEGVNSGELIVKLVLKEWQFSDGSHSFNKFPVSSRKSMTGLSNLVSRTG 486

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           RKINV VVEGKDL  K+KSGKCDPYVKLQYGK +QRTRTA + N +WNQKFE DEI GGE
Sbjct: 487 RKINVVVVEGKDLSAKEKSGKCDPYVKLQYGKAIQRTRTATASNAIWNQKFEFDEIEGGE 546

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 485
           CLM+KCY+EE+FGD+ MGSARV+LEGLVEGS+RD+WVPLEKV++GELRLQIEA RVDD E
Sbjct: 547 CLMIKCYSEEMFGDDGMGSARVSLEGLVEGSIRDVWVPLEKVSSGELRLQIEAVRVDDYE 606

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 545
           GS+G   GS NGWIELV++EA+DL+AADLRGTSDPYV+VQYG+LKKRTKV++KTLNPQW+
Sbjct: 607 GSKGSIAGSKNGWIELVLIEAKDLIAADLRGTSDPYVRVQYGNLKKRTKVMYKTLNPQWN 666

Query: 546 QTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQ LPPNQM+DKWIPLQGV++GEIHV
Sbjct: 667 QTLEFPDDGSPLMLHVKDHNALLPTSSIGDCVVEYQGLPPNQMSDKWIPLQGVKRGEIHV 726

Query: 606 LITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETL 665
            +TRK+PE+ KR S+DS++S T++H+ S QMKQMM+KF SLI+D +LE LSTALSE+E +
Sbjct: 727 KVTRKIPEIQKRPSLDSEASLTKSHQFSSQMKQMMIKFHSLIEDGDLEGLSTALSEMEGI 786

Query: 666 EDSQEEYMVQLETEQMLLLNKIKELGQEII 695
           E+ QEEYMVQLE EQ LLL KIKELGQEI 
Sbjct: 787 EEMQEEYMVQLEMEQTLLLEKIKELGQEIF 816

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439403|ref|XP_004137475.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus] gi|449486832|ref|XP_004157416.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus]

 Score = 1092 bits (2823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/697 (73%), Positives = 606/697 (86%), Gaps = 7/697 (1%)

Query: 7   LKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL 66
           + KRLK RK RLIEKIEL +FSLGS  P LGL GTRWS+ GD+R+M L FDWD N++SIL
Sbjct: 109 VNKRLKDRKSRLIEKIELLDFSLGSCPPSLGLSGTRWSTCGDERIMHLSFDWDTNEMSIL 168

Query: 67  LLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQS 126
           L AKL KP +GTA+IVINSLHIKGDL++MPIL+G+AVL+SFV+ PDVRIGVAFGSGGSQS
Sbjct: 169 LQAKLGKPFMGTARIVINSLHIKGDLVLMPILDGRAVLFSFVTTPDVRIGVAFGSGGSQS 228

Query: 127 LPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS 186
           LPATELPGVS+WL ++  +TLV+T+VEPRRRC+SLPAVDLRKKAVGGIVYV VISA KL 
Sbjct: 229 LPATELPGVSSWLVKIFTDTLVRTMVEPRRRCFSLPAVDLRKKAVGGIVYVTVISARKLY 288

Query: 187 RSSLRGSPSRRQQNYSADS-SLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           RSSL+GSP+RRQQ+YSA++ S  EH  DKD+ TFVE+ELE+L+R+TDAR GSDP+W++ F
Sbjct: 289 RSSLKGSPTRRQQSYSANNGSFGEHLTDKDMQTFVEVELEKLSRKTDARSGSDPQWNTTF 348

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NM+LHE+TGT+RF+LYE  P HVK+DYL SCEVKMKY ADDSTTFWAIGPDS ++AK+A+
Sbjct: 349 NMILHEDTGTLRFHLYEYNPSHVKHDYLASCEVKMKYAADDSTTFWAIGPDSSVVAKYAD 408

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
           FCG EVEM +PFEG + GEL VRLVLKEW FSDGSHS N +H  SQQSL G+S+F+S TG
Sbjct: 409 FCGKEVEMDIPFEGAHCGELRVRLVLKEWMFSDGSHSSNRYHVSSQQSLYGASSFLSSTG 468

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           RKIN+TVVEGKDL  KDK+GKCDPYVKLQYGK +QRTRTAHS N  WNQKFE DEI GGE
Sbjct: 469 RKINITVVEGKDLPTKDKNGKCDPYVKLQYGKALQRTRTAHSFNPTWNQKFEFDEIAGGE 528

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 485
            L +KC  E+IFG++N GSARVNLEGLVEGSVRD+W+PLEKVN+GELRLQIEA RVDDNE
Sbjct: 529 YLKLKCLTEDIFGNDNTGSARVNLEGLVEGSVRDVWIPLEKVNSGELRLQIEAIRVDDNE 588

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 545
           GS+G ++   NGWIELV++EARDLVAAD+RGTSDPYV+VQYG LKKRTK+++KTL+PQW+
Sbjct: 589 GSKGSSLAPTNGWIELVLIEARDLVAADIRGTSDPYVRVQYGKLKKRTKIMYKTLSPQWN 648

Query: 546 QTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           Q LEFPD+GSPL LHV+DHNALL +SSIGDCVVEYQ LPPNQM DKWIPLQGV++GEIH+
Sbjct: 649 QVLEFPDNGSPLLLHVKDHNALLPTSSIGDCVVEYQGLPPNQMFDKWIPLQGVKRGEIHI 708

Query: 606 LITRKVPELDKRTSIDSDSS------STRAHKISGQMKQMMVKFQSLIDDDNLEELSTAL 659
            IT++VPELDKR+S+DS +S        +AH++S QMKQMM K Q+ I+D NLE L+TA+
Sbjct: 709 QITKRVPELDKRSSLDSKTSLDSEFPMNKAHQVSSQMKQMMNKLQTFIEDSNLEGLATAM 768

Query: 660 SELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIIN 696
           SELE+LED QEEYMVQLE EQMLL+NKIKELGQE +N
Sbjct: 769 SELESLEDLQEEYMVQLENEQMLLINKIKELGQEFLN 805

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491448|ref|XP_002276429.2| PREDICTED: uncharacterized protein LOC100262742 [Vitis vinifera]

 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/702 (75%), Positives = 611/702 (87%), Gaps = 6/702 (0%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI
Sbjct: 122 IVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSI 181

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           +LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQ
Sbjct: 182 MLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQ 241

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKL
Sbjct: 242 SLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKL 301

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           SRSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+F
Sbjct: 302 SRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLF 361

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NM+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAE
Sbjct: 362 NMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAE 421

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
           FCG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TG
Sbjct: 422 FCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTG 481

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGG 424
           RKIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGG
Sbjct: 482 RKINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGG 540

Query: 425 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDN 484
           E L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E   +DD 
Sbjct: 541 EYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVVSLDDY 600

Query: 485 EGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQW 544
           E +   N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTKV+FKTLNPQW
Sbjct: 601 EVA---NAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLNPQW 657

Query: 545 HQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
           +QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPNQMADKWIPLQGV++GEIH
Sbjct: 658 NQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIH 717

Query: 605 VLITRKVPELDKRTSIDSDSSS-TRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELE 663
           V ITRK+PE+ +R S++S+ SS  +AH++S QMKQMM K ++ I+D NLE LS  +SELE
Sbjct: 718 VQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLETQIEDGNLEGLSAVVSELE 777

Query: 664 TLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 705
           +L+D+QEEYMVQLETEQMLLLNKI ELGQE  NS PS+ RRS
Sbjct: 778 SLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRS 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135377|ref|XP_002322058.1| plant synaptotagmin [Populus trichocarpa] gi|222869054|gb|EEF06185.1| plant synaptotagmin [Populus trichocarpa]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/690 (75%), Positives = 612/690 (88%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLK R+ +LIEKIELQEFSLGS  P LG HGT WS+SGDQR+M LGFDWD +D+SI
Sbjct: 123 IVEKRLKQRRSKLIEKIELQEFSLGSCPPYLGPHGTCWSTSGDQRIMNLGFDWDTSDMSI 182

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           LLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSFVS P+VRIGVAFGSGGSQ
Sbjct: 183 LLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSFVSTPEVRIGVAFGSGGSQ 242

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL +++ +TLVKT+VEP RRCY LPAVDLRKKAVGGIVYV VISA KL
Sbjct: 243 SLPATELPGVSSWLVKVLTDTLVKTMVEPHRRCYCLPAVDLRKKAVGGIVYVSVISARKL 302

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           SRS+LRGSP RR+Q++S + SL EH++D+DL TFVE+EL +LTRRT+ R GS PRWDS F
Sbjct: 303 SRSNLRGSPPRREQSHSLNGSLVEHFDDEDLRTFVEVELGQLTRRTEVRLGSSPRWDSTF 362

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NMVLHE+TGT+R +LY C P  VKYDYL SCE+KMKY ADDST FWAIGPDSG+IAK AE
Sbjct: 363 NMVLHEDTGTLRLHLYNCPPNSVKYDYLASCEIKMKYAADDSTAFWAIGPDSGVIAKRAE 422

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
           FCG+EVEM VPFEGV SGELTV+LV+KEWQFSDGS SLN F+  S +S+ GSSN +SRTG
Sbjct: 423 FCGNEVEMVVPFEGVTSGELTVKLVVKEWQFSDGSLSLNKFNVSSLKSMYGSSNLLSRTG 482

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           RKINV ++EGKDL+ K++SGKCDPYVKLQYGK++Q+TRTAH+ N  WNQKFE DEI    
Sbjct: 483 RKINVAIMEGKDLISKERSGKCDPYVKLQYGKVLQKTRTAHNSNPFWNQKFEFDEIVDDG 542

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 485
           CL +KCY+EEIFGDEN+GSARVNLEGL+EGS+RDIWVPLE+VN+GELRLQIEA RV+D+E
Sbjct: 543 CLKIKCYSEEIFGDENIGSARVNLEGLLEGSIRDIWVPLERVNSGELRLQIEAVRVNDSE 602

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 545
           GSRG   GS NGWIEL++VEA+DL+AADLRGTSDPYV+VQYG LKKRTKV++KTLNPQW+
Sbjct: 603 GSRGSVSGSFNGWIELILVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYKTLNPQWN 662

Query: 546 QTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           QTLEFPDDGSPL LHV+D+NALL + SIGDCVVEYQ LPPNQ +DKWIPLQGV +GEIHV
Sbjct: 663 QTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGLPPNQTSDKWIPLQGVTRGEIHV 722

Query: 606 LITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETL 665
            ITRKVPEL  R+S+++D+S T++H+IS QMKQ M+K QSLI+D NLE LSTALSE+++L
Sbjct: 723 RITRKVPELQTRSSLEADASLTKSHQISNQMKQSMIKLQSLIEDGNLEGLSTALSEMQSL 782

Query: 666 EDSQEEYMVQLETEQMLLLNKIKELGQEII 695
           ED QEEY VQLETEQMLLLNKIK+LGQEI+
Sbjct: 783 EDIQEEYTVQLETEQMLLLNKIKQLGQEIM 812

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734213|emb|CBI15460.3| unnamed protein product [Vitis vinifera]

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/702 (74%), Positives = 606/702 (86%), Gaps = 13/702 (1%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI
Sbjct: 122 IVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSI 181

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           +LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQ
Sbjct: 182 MLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQ 241

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKL
Sbjct: 242 SLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKL 301

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           SRSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+F
Sbjct: 302 SRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLF 361

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NM+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAE
Sbjct: 362 NMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAE 421

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
           FCG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TG
Sbjct: 422 FCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTG 481

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGG 424
           RKIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGG
Sbjct: 482 RKINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGG 540

Query: 425 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDN 484
           E L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E       
Sbjct: 541 EYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVV----- 595

Query: 485 EGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQW 544
                 N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTKV+FKTLNPQW
Sbjct: 596 -----ANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLNPQW 650

Query: 545 HQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
           +QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPNQMADKWIPLQGV++GEIH
Sbjct: 651 NQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIH 710

Query: 605 VLITRKVPELDKRTSIDSDSSS-TRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELE 663
           V ITRK+PE+ +R S++S+ SS  +AH++S QMKQMM K ++ I+D NLE LS  +SELE
Sbjct: 711 VQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLETQIEDGNLEGLSAVVSELE 770

Query: 664 TLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 705
           +L+D+QEEYMVQLETEQMLLLNKI ELGQE  NS PS+ RRS
Sbjct: 771 SLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRS 812

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118810|ref|XP_002317912.1| plant synaptotagmin [Populus trichocarpa] gi|222858585|gb|EEE96132.1| plant synaptotagmin [Populus trichocarpa]

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/690 (75%), Positives = 609/690 (88%), Gaps = 7/690 (1%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLK ++ +L+EK+ELQEFSLGS  P LGLHGTRWS+SGDQR+M LGFDWD+ D+SI
Sbjct: 124 IVEKRLKQQRLKLMEKLELQEFSLGSCPPSLGLHGTRWSTSGDQRIMHLGFDWDSKDMSI 183

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           LLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSFVSIP+VRIGVAFGSGGSQ
Sbjct: 184 LLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSFVSIPEVRIGVAFGSGGSQ 243

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL ++  +TLVKT++EPRRRC+SLPAVDLRKKAVGGIVYV VISASKL
Sbjct: 244 SLPATELPGVSSWLVKVFTDTLVKTMIEPRRRCFSLPAVDLRKKAVGGIVYVSVISASKL 303

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           SRS+LRGSP RR      + S  EH++DK L TFVE+EL  LTRRTD RPGS+PRWDS F
Sbjct: 304 SRSNLRGSPPRR-----VNGSFIEHFDDKYLQTFVEVELGHLTRRTDVRPGSNPRWDSTF 358

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NM LHEETGT+R +LY   P  VKYDYL SCE+KMKYVADDSTTFWAIGPDSG+IAKHAE
Sbjct: 359 NMFLHEETGTLRLHLYNRPPNSVKYDYLASCEIKMKYVADDSTTFWAIGPDSGVIAKHAE 418

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTG 365
            CG EVEM VPFEGV SGELTV+LV+KEW FSDGSHSLNN    SQ+S+ GSSN +SRTG
Sbjct: 419 ICGKEVEMVVPFEGVTSGELTVKLVVKEWLFSDGSHSLNNV--SSQKSIYGSSNILSRTG 476

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
           RKINV V+EGK L+ K++SGKCDPYVKLQYGK++Q+TRTAHS N +WNQKFE DEI    
Sbjct: 477 RKINVAVMEGKGLISKERSGKCDPYVKLQYGKVLQKTRTAHSSNPLWNQKFEFDEIVDDR 536

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 485
           CL +KCY+EEIFGDE++GSARVNLEGL+EG +RD+WVPLEKVNTGELRLQIEA +V+D+E
Sbjct: 537 CLKIKCYSEEIFGDESIGSARVNLEGLMEGFIRDMWVPLEKVNTGELRLQIEAVQVNDSE 596

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 545
           GSRG   GS NG IELV+VEA+DL+AADLRGTSDPYV+VQYG LKKRTKV++KTLNP W+
Sbjct: 597 GSRGSMSGSFNGLIELVLVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYKTLNPHWN 656

Query: 546 QTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           QTLEFPDDGSPL LHV+D+NALL + SIGDCVVEYQ LPPNQM+DKWIPLQGV +GEIHV
Sbjct: 657 QTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGLPPNQMSDKWIPLQGVTRGEIHV 716

Query: 606 LITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETL 665
            ITRKVPEL  R S++SD+S  ++H+IS QMKQ+M+KFQSLI++ +LE LSTALSE+++L
Sbjct: 717 RITRKVPELQARNSLESDTSLIKSHQISNQMKQLMIKFQSLIEEGSLEGLSTALSEMQSL 776

Query: 666 EDSQEEYMVQLETEQMLLLNKIKELGQEII 695
           ED QEEYMVQ+ETEQMLLLNKIKELGQEI+
Sbjct: 777 EDMQEEYMVQIETEQMLLLNKIKELGQEIM 806

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500377|ref|XP_003620477.1| Plant synaptotagmin [Medicago truncatula] gi|355495492|gb|AES76695.1| Plant synaptotagmin [Medicago truncatula]

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/695 (71%), Positives = 600/695 (86%), Gaps = 5/695 (0%)

Query: 3   LHLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAND 62
           L  +++ RLK RKPR +E++ELQEFSLGS  P L L G RWS+ GDQRVMQLGFDWD ++
Sbjct: 122 LSAIVEARLKLRKPRFLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWDTHE 181

Query: 63  ISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSG 122
           +SILLLAKLAKPL+GTA+IVINSLHIKGDL+  PIL+GKA+LYSFVS P+VR+GVAFGSG
Sbjct: 182 MSILLLAKLAKPLMGTARIVINSLHIKGDLIFTPILDGKALLYSFVSAPEVRVGVAFGSG 241

Query: 123 GSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISA 182
           GSQSLPATE PGVS+WL +L  +TLVKT+VEPRRRC++LPAVDLRKKAVGGI+YVRVISA
Sbjct: 242 GSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYVRVISA 301

Query: 183 SKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWD 242
           +KLS SS + S  RRQQ+ S + S E+  +DKDL TFVE+E+EELTRRTD R GS PRWD
Sbjct: 302 NKLSSSSFKAS--RRQQSGSTNGSSEDVSDDKDLHTFVEVEIEELTRRTDVRLGSTPRWD 359

Query: 243 SMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAK 302
           + FNMVLH+ TGT+RFNLYECIP +VK DYL SCE+K+++V DDST  WA+GPDSGIIAK
Sbjct: 360 APFNMVLHDNTGTLRFNLYECIPNNVKCDYLGSCEIKLRHVEDDSTIMWAVGPDSGIIAK 419

Query: 303 HAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFIS 362
            A+FCGDE+EM VPFEG NSGEL V +V+KEWQFSDG+HSLNN  + SQQSL+GSSN   
Sbjct: 420 QAQFCGDEIEMVVPFEGTNSGELKVSIVVKEWQFSDGTHSLNNLRNNSQQSLNGSSNIQL 479

Query: 363 RTGRKINVTVVEGKDLMP-KDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEI 421
           RTG+K+ +TVVEGKDL   K+K+GK DPY+KLQYGK++Q+T+T+H+PN VWNQ  E DE+
Sbjct: 480 RTGKKLKITVVEGKDLAAAKEKTGKFDPYIKLQYGKVMQKTKTSHTPNPVWNQTIEFDEV 539

Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRV 481
           GGGE L +K + EE+FGDEN+GSA+VNLEGLV+GSVRD+W+PLE+V +GE+RL+IEA +V
Sbjct: 540 GGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLKIEAIKV 599

Query: 482 DDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLN 541
           DD EGS G    SGNGWIELV++E RDLVAADLRGTSDPYV+V YG+ KKRTKVI+KTL 
Sbjct: 600 DDQEGSTGSG--SGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLT 657

Query: 542 PQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKG 601
           PQW+QTLEFPDDGSPL L+V+DHNALL +SSIG+CVVEYQRLPPNQMADKWIPLQGV++G
Sbjct: 658 PQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRG 717

Query: 602 EIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSE 661
           EIH+ ITRKVPE+ KR S+DS+ S ++ H+I  Q+KQMM+KF+S I+D NLE LST LSE
Sbjct: 718 EIHIQITRKVPEMQKRQSMDSEPSLSKLHQIPTQIKQMMIKFRSQIEDGNLEGLSTTLSE 777

Query: 662 LETLEDSQEEYMVQLETEQMLLLNKIKELGQEIIN 696
           LETLED+QE Y+ QLETEQMLLL+KIKELGQEIIN
Sbjct: 778 LETLEDTQEGYVAQLETEQMLLLSKIKELGQEIIN 812

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441149|ref|XP_004138346.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus] gi|449477454|ref|XP_004155027.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus]

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/710 (70%), Positives = 606/710 (85%), Gaps = 7/710 (0%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLKHR+P+LIE+IEL EFSLGS  P LGL GT+WS+SG+QR+M+LGFDWD N++SI
Sbjct: 129 IVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSI 188

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           +LLAKLA P  GTA+IVINS+HI GDLL+ PIL+G+A+LYSFV  P+VRIGVAFGSGGSQ
Sbjct: 189 MLLAKLAMPFTGTARIVINSIHIMGDLLLRPILDGRAILYSFVFTPEVRIGVAFGSGGSQ 248

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATELPGVS+WL +L+ + +V+T+VEPRRRC+SLPAVDL KKAV G +YV VISASKL
Sbjct: 249 SLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFSLPAVDLGKKAVSGTIYVTVISASKL 308

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKD-LTTFVEIELEELTRRTDARPGSDPRWDSM 244
           SR+SLRG+ SR+  +   +S L+E+  DKD L TFVE+EL+EL+RRT  R GS+P W+S 
Sbjct: 309 SRNSLRGNSSRKPLSTYMNSPLDENLIDKDDLQTFVEVELDELSRRTAVRLGSNPVWNST 368

Query: 245 FNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHA 304
           FNM+LHE+TGT+RFNLYE  P +VKYDYL SCEVKMKY ADDST+FWAIG DS +IAKH+
Sbjct: 369 FNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTSFWAIGSDSEVIAKHS 428

Query: 305 EFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRT 364
           EFCG EVEM VPFEGV+ GELTV+L++KEWQFSDGSHS +NF    QQS++GSSNF SRT
Sbjct: 429 EFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFQVRPQQSVNGSSNFASRT 488

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGG 424
           GRK+ +T+VEGKDL  KDKSGKC+ YVKL+YGK + +TRT  S N  WNQKFELDEIGGG
Sbjct: 489 GRKMAITLVEGKDLSLKDKSGKCESYVKLEYGKALLKTRTGISVNPNWNQKFELDEIGGG 548

Query: 425 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDN 484
           E L VKC+  +IFGDEN+G+ARVNLEGL EG VRD+WVPLEKVN+GELRL IEA + DD 
Sbjct: 549 EYLKVKCFGVDIFGDENIGTARVNLEGLHEGVVRDVWVPLEKVNSGELRLMIEAVKADDY 608

Query: 485 EGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQW 544
           EGSRG NIGS NGWIELVI+EA+DLVAAD+ GTSDPYV+VQYG+LKKRTKV+FKTLNP W
Sbjct: 609 EGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHW 668

Query: 545 HQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
           +QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPNQMADKWIPLQGV++GEIH
Sbjct: 669 NQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIH 728

Query: 605 VLITRKVPELDK------RTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTA 658
           V ITRKVP+L+K        S DS+SS T+AH++S QMKQ + KF +LI++ NL+ LS  
Sbjct: 729 VQITRKVPDLEKERRLSLEPSSDSESSVTKAHQVSSQMKQTISKFHALIEEANLDGLSAP 788

Query: 659 LSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRSPGN 708
           L+ELE LE+ QEEY++QLETEQMLL++K+KELGQEI++SS + + RS GN
Sbjct: 789 LNELERLEELQEEYILQLETEQMLLISKVKELGQEILSSSSTTSWRSSGN 838

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815879|emb|CAN72583.1| hypothetical protein VITISV_035295 [Vitis vinifera]

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/654 (74%), Positives = 565/654 (86%), Gaps = 13/654 (1%)

Query: 20  EKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTA 79
           EKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI+LLAKLAKPLLGTA
Sbjct: 100 EKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTA 159

Query: 80  KIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWL 139
           +IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQSLPATELPGVS+WL
Sbjct: 160 RIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQSLPATELPGVSSWL 219

Query: 140 ARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQ 199
            +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKLSRSSL+GSP RRQQ
Sbjct: 220 VKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLSRSSLKGSPLRRQQ 279

Query: 200 NYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFN 259
           + S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+FNM+LHE+TGT+RF 
Sbjct: 280 SCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQ 339

Query: 260 LYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG 319
           LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAEFCG EVEM VPFEG
Sbjct: 340 LYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEFCGKEVEMVVPFEG 399

Query: 320 VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLM 379
            NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TGRKIN+TVVEGKDL+
Sbjct: 400 ANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGRKINITVVEGKDLI 459

Query: 380 PKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG 438
             +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGGE L +KC+NEE FG
Sbjct: 460 -ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGEYLKIKCFNEETFG 518

Query: 439 DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGW 498
           D+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E             N GSGNGW
Sbjct: 519 DDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVV----------ANAGSGNGW 568

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
           +ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTKV+FKTLNPQW+QTLEFPDDGSPL 
Sbjct: 569 VELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLE 628

Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRT 618
           LHV+DHNALL +SSIGDCVVEYQRLPPNQMADKWIPLQGV++GEIHV ITRK+PE+ +R 
Sbjct: 629 LHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKIPEIQRRP 688

Query: 619 SIDSDSSS-TRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEE 671
           S++S+ SS  +AH++S QMKQMM K ++ I+D NLE LS  +SELE+L+D+QEE
Sbjct: 689 SLESEPSSLIKAHZVSSQMKQMMNKLETQIEDGNLEGLSAVVSELESLQDTQEE 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522767|ref|XP_003530017.1| PREDICTED: uncharacterized protein LOC100789237 [Glycine max]

 Score =  996 bits (2575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/701 (71%), Positives = 599/701 (85%), Gaps = 4/701 (0%)

Query: 6   LLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISI 65
           +++KRLK RKPRL+E++ELQEFSLGS  P L L G RWS+ GDQR +QLGFDWD N++SI
Sbjct: 124 IVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRFLQLGFDWDTNEMSI 183

Query: 66  LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQ 125
           LLLAKLAKPL+GTA+IVINSLHIKGDLL  PIL+GKA+LYSFVS P+VRIGVAFGSGGSQ
Sbjct: 184 LLLAKLAKPLIGTARIVINSLHIKGDLLASPILDGKALLYSFVSTPEVRIGVAFGSGGSQ 243

Query: 126 SLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL 185
           SLPATE PGVS+WL +L  +TL KT+VEPRRRC++LPAVDLRKKAVGGI+Y+RVISA+KL
Sbjct: 244 SLPATEWPGVSSWLEKLFTDTLAKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKL 303

Query: 186 SRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMF 245
           SRS  + S  RRQ N +++   E++++DKDL TFVE+E+EELTRRTD R GS PRWD+ F
Sbjct: 304 SRSCFKTS--RRQPNGTSNGCSEDNFDDKDLQTFVEVEIEELTRRTDVRLGSTPRWDAPF 361

Query: 246 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE 305
           NMVLH+  GT+RFNL+E  P +V+ DYL SCE+K+++V DDST  WAIGPDSG+IAK A+
Sbjct: 362 NMVLHDNAGTLRFNLHESSPNNVRCDYLASCEIKLRHVEDDSTIMWAIGPDSGVIAKQAQ 421

Query: 306 FCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSS-NFISRT 364
           FCG+E+EM VPFEG NSGEL V +V+KEWQ+SDGSHSLN+  S S Q     S NF  RT
Sbjct: 422 FCGEEIEMVVPFEGSNSGELKVSIVVKEWQYSDGSHSLNSLRSSSSQQSINGSPNFQLRT 481

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGG 424
           GRKINVTVVEGKDL  KDKSGK DPY+KLQYGK+VQ+TRT H+PN  WNQ FE DEIGGG
Sbjct: 482 GRKINVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKTRTVHTPNPAWNQTFEFDEIGGG 541

Query: 425 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDN 484
           E L +K ++EEIFGDEN+GSA VNLEGLVEGSVRD+W+PLE+V +GELRLQI + R DD 
Sbjct: 542 EYLKIKGFSEEIFGDENIGSAHVNLEGLVEGSVRDVWIPLERVRSGELRLQI-SIRADDQ 600

Query: 485 EGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQW 544
           EGSRG  +G GNGWIELV++E R LVAAD+RGTSDP+V+V YG+ KK+TKVI+KTLNPQW
Sbjct: 601 EGSRGSGLGLGNGWIELVLIEGRGLVAADVRGTSDPFVRVHYGNFKKKTKVIYKTLNPQW 660

Query: 545 HQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
           +QTLEFPDDGS L L+V+DHNALL +SSIG+CVVEYQRLPPNQ ADKWIPLQGV++GEIH
Sbjct: 661 NQTLEFPDDGSQLMLYVKDHNALLPTSSIGECVVEYQRLPPNQTADKWIPLQGVKRGEIH 720

Query: 605 VLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELET 664
           + ITRKVPE+ KR S+DS+ S ++ H+I  Q+KQMM+KF+S I+D NLE LS  LSELET
Sbjct: 721 IQITRKVPEMQKRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFIEDGNLEGLSATLSELET 780

Query: 665 LEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 705
           LED+QE Y+VQLETEQMLLL+KIKELGQEIINSSPS++RRS
Sbjct: 781 LEDTQEGYIVQLETEQMLLLSKIKELGQEIINSSPSLSRRS 821

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	713
TAIR|locus:2095062	815	ATSYTF "AT3G18370" [Arabidopsi	0.932	0.815	0.567	7.9e-204
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.140	0.175	0.377	1.2e-18
TAIR|locus:2089601	737	NTMC2T6.2 [Arabidopsis thalian	0.147	0.142	0.372	3.3e-18
RGD|1305199	946	Mctp1 "multiple C2 domains, tr	0.206	0.155	0.312	1.4e-16
ZFIN|ZDB-GENE-050506-136	665	mctp2b "multiple C2 domains, t	0.115	0.123	0.333	8.5e-16
TAIR|locus:2024912	751	NTMC2T6.1 [Arabidopsis thalian	0.147	0.139	0.354	1.7e-15
UNIPROTKB|Q6DN14	999	MCTP1 "Multiple C2 and transme	0.151	0.108	0.350	1.1e-14
UNIPROTKB|F1NF56	657	RASA4 "Uncharacterized protein	0.309	0.336	0.278	4.1e-13
UNIPROTKB|E1BPM0	802	RASAL1 "Uncharacterized protei	0.291	0.259	0.300	4.2e-12
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.154	0.106	0.313	5.4e-12

TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1972 (699.2 bits), Expect = 7.9e-204, P = 7.9e-204
 Identities = 383/675 (56%), Positives = 480/675 (71%)

Query:    19 IEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIXXXXXXXXXXXXX 78
             IE I+L EFSLGS  P LGLHGT WS SG+Q++M+L F+WD  D+SI             
Sbjct:   137 IENIQLLEFSLGSCPPLLGLHGTCWSKSGEQKIMRLDFNWDTTDLSILLQAKLSMPFNRT 196

Query:    79 XXIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNW 138
               IV+NSL IKGD+L+ PILEG+A+LYSFVS P+VRIGVAFG GG QSLPATELPGVS+W
Sbjct:   197 ARIVVNSLCIKGDILIRPILEGRALLYSFVSNPEVRIGVAFGGGGGQSLPATELPGVSSW 256

Query:   139 LARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVXXXXXXXXXXXXXXXXXXXXQ 198
             L +++ ETL K +VEPRR C+SLPA DL K A+GGI+YV                     
Sbjct:   257 LVKILTETLNKKMVEPRRGCFSLPATDLHKTAIGGIIYVTVVSGNNLNRRILRGSPSKSS 316

Query:   199 QNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRF 258
             +     S    +   K + TFVE+ELE+L+RRT+ + G +P + S FNM+LH+ TGT++F
Sbjct:   317 EIGEGSSG---NSSSKPVQTFVEVELEQLSRRTEMKSGPNPAYQSTFNMILHDNTGTLKF 373

Query:   259 NLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE 318
             NLYE  PG V+YD L SCEVKMKYV DDST FWA+G D+G+IAKHAEFCG E+EM VPFE
Sbjct:   374 NLYENNPGSVRYDSLASCEVKMKYVGDDSTMFWAVGSDNGVIAKHAEFCGQEIEMVVPFE 433

Query:   319 GVNSGELTVRLVLKEWQFSDGSHSLNNFHXXXXXXXXXXXNFISRTGRKINVTVVEGKDL 378
             GV+SGELTVRL+LKEW FSDGSHSLN+ +             +S+TGRKI VTV+ GK+L
Sbjct:   434 GVSSGELTVRLLLKEWHFSDGSHSLNSVNSSSLHSLDSSSALLSKTGRKIIVTVLAGKNL 493

Query:   379 MPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG 438
             + KDKSGKCD  VKLQYGKI+Q+T+  ++   VWNQKFE +E+ G E L VKCY EE+ G
Sbjct:   494 VSKDKSGKCDASVKLQYGKIIQKTKIVNAAECVWNQKFEFEELAGEEYLKVKCYREEMLG 553

Query:   439 DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGW 498
              +N+G+A ++L+G +  S   IWVPLE VN+GE+ L IEA    D E S      S  G 
Sbjct:   554 TDNIGTATLSLQG-INNSEMHIWVPLEDVNSGEIELLIEAL---DPEYSEAD---SSKGL 606

Query:   499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
             IELV+VEARDLVAAD+RGTSDPYV+VQYG+ K+RTKVI+KTL P+W+QT+EFPDDGS L 
Sbjct:   607 IELVLVEARDLVAADIRGTSDPYVRVQYGEKKQRTKVIYKTLQPKWNQTMEFPDDGSSLE 666

Query:   559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKXX 618
             LHV+D+N LL +SSIG+CVVEYQ L PN+ ADKWI LQGV+ GE+HV +TRKV E+ +  
Sbjct:   667 LHVKDYNTLLPTSSIGNCVVEYQGLKPNETADKWIILQGVKHGEVHVRVTRKVTEIQRRA 726

Query:   619 XXXXXXXXXXAHKISGQMKQMMVKFQSLIDDDNXXXXXXXXXXXXXXXDSQEEYMVQLET 678
                       A  +S QMKQ+M+KFQ+LIDD +               D QE+Y++QL+T
Sbjct:   727 SAGPGTPFNKALLLSNQMKQVMIKFQNLIDDGDLEGLAEALEELESLEDEQEQYLLQLQT 786

Query:   679 EQMLLLNKIKELGQE 693
             EQ LL+NKIK+LG+E
Sbjct:   787 EQSLLINKIKDLGKE 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:   367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT----AHSPNHVWNQKFE-LDEI 421
             K++V VV+ KDL  KD  GK DPY  +    +  RT+     ++S N +WN+ FE + E 
Sbjct:   265 KLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVED 324

Query:   422 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEK 466
                + L V+ +++E  G   + G+A+V L  LV G V+DIW+ L K
Sbjct:   325 VSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVK 370

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 41/110 (37%), Positives = 64/110 (58%)

Query:   503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 558
             +VEA D+  +DL G +DPYVK Q G  + +TK+++KTL P+W +  + P    D  + L 
Sbjct:   289 VVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSANILN 348

Query:   559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
             + V+D +   +  S+GDC V        Q  D W+PLQ ++ G +H+ IT
Sbjct:   349 IEVQDKDRF-SDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAIT 397

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

RGD|1305199 Mctp1 "multiple C2 domains, transmembrane 1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 49/157 (31%), Positives = 80/157 (50%)

Query:   454 EGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD 513
             EG  RD+ + + K      + Q ++ R+ D    R  ++    G + + ++E RDL A D
Sbjct:   378 EGEPRDVTMLMRKSWKRSSKFQTQSLRLSDQH--RKSHLW--RGIVSITLIEGRDLKAMD 433

Query:   514 LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNALLAS 570
               G SDPYVK + G  K ++K++ KTLNPQW +  +F    + G  + +   D +A    
Sbjct:   434 SNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGVMDITAWDKDAGKRD 493

Query:   571 SSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 607
               IG C V+   L   Q   K + LQ + +GE H+++
Sbjct:   494 DFIGRCQVDLSSLSREQ-THK-LELQ-LEEGEGHLVL 527

GO:0005509 "calcium ion binding" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO

ZFIN|ZDB-GENE-050506-136 mctp2b "multiple C2 domains, transmembrane 2b" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
 Identities = 28/84 (33%), Positives = 51/84 (60%)

Query:   497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 554
             G++++ +++A DL++ADL G SDP+  ++ G+ + +T  I+KTLNP+W++   FP  D  
Sbjct:   299 GFLQVKVIKATDLISADLNGKSDPFCVLELGNSRLQTHTIYKTLNPEWNKVFTFPVKDIH 358

Query:   555 SPLTLHVRDHNALLASSSIGDCVV 578
               L + V D +   A   +G   +
Sbjct:   359 EVLEVTVFDEDGDKAPDFLGKVAI 382

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 39/110 (35%), Positives = 62/110 (56%)

Query:   503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 558
             + EA DL  +DL G +DPYVK + G  + +TK+  KTL+P+WH+  + P    D  S L 
Sbjct:   288 VFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILN 347

Query:   559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
             + V D +  +   ++G+C V  +     Q  D W+ LQ ++ G +H+ IT
Sbjct:   348 IEVGDKDRFV-DDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q6DN14 MCTP1 "Multiple C2 and transmembrane domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 40/114 (35%), Positives = 62/114 (54%)

Query:   497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF---PDD 553
             G + + ++E RDL A D  G SDPYVK + G  K ++K++ KTLNPQW +  +F    + 
Sbjct:   470 GIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEER 529

Query:   554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 607
             G  + +   D +A      IG C V+   L   Q   K + LQ + +GE H+++
Sbjct:   530 GGVIDITAWDKDAGKRDDFIGRCQVDLSALSREQ-THK-LELQ-LEEGEGHLVL 580

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=NAS

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1NF56 RASA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 66/237 (27%), Positives = 109/237 (45%)

Query:   368 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
             +++ +VEG++L  KD +G  DPY  VK+    IV+      + +  W +++E+       
Sbjct:     8 LSIRIVEGRNLPAKDITGSSDPYCIVKIDNEAIVRTATVWKTLSPFWGEEYEVQLHPTFH 67

Query:   426 CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVR-DIWVPLEKVNTGELRLQIEA-TRVD 482
              + +   +E+    D+ +G   +    L E       WV L +V+  E  +Q E   RV+
Sbjct:    68 SISIYVMDEDALSRDDVIGKVCITRTMLAEHPKGYSGWVSLSEVDPDE-EVQGEIHLRVE 126

Query:   483 DNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP 542
               EG  GQ +          ++EARDL   D  G SDP+V V Y    + + V+ K+  P
Sbjct:   127 LLEGEGGQRL-------RCTVLEARDLAKKDRNGASDPFVCVSYNGKTQESTVVKKSCYP 179

Query:   543 QWHQTLEF--PDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
             +W++  EF  PD     L + V D + +  +  +G  VV  Q L      + W  LQ
Sbjct:   180 RWNEAFEFELPDPPAEKLCVEVWDWDLVSKNDFLGKVVVSVQGLQAAGHQEGWFRLQ 236

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BPM0 RASAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 70/233 (30%), Positives = 112/233 (48%)

Query:   368 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGG 424
             +NV VVEG+ L  KD SG  DPY  VK+   ++V RT T   S +  W +++ +      
Sbjct:     7 LNVRVVEGRALPAKDVSGSSDPYCIVKVD-DEVVARTATIWRSLSPFWGEEYTVHLPLDF 65

Query:   425 ECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPLEKVNT-GELRLQIEATRV 481
               L     +E+  G D+ +G   ++ E +  +    D W+ L +V+   E++ +I    V
Sbjct:    66 HHLSFYVLDEDTVGQDDIIGKISLSREAITADPRGIDSWINLSRVDPDSEVQGEI-CLSV 124

Query:   482 DDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLN 541
                E  RG+        +   +++ARDL   D+ GTSDP+ +V +G     T  I KT  
Sbjct:   125 QTLEDVRGR-------CLHCHVLQARDLAPRDISGTSDPFARVFWGSQSLETSTIKKTRF 177

Query:   542 PQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 586
             P W + LE    P   SPL + + D + +  +  +G  +VE+     Q  PPN
Sbjct:   178 PHWDEVLELREMPGSPSPLRVELWDWDMVGKNDFLG--MVEFPPQVLQHNPPN 228

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 148 (57.2 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
 Identities = 37/118 (31%), Positives = 60/118 (50%)

Query:   488 RGQNIG---SGNGWIELV-IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQ 543
             RG + G    GNGW+  V +++  +L A    G SDPYV        K + + F TL P+
Sbjct:   543 RGSDHGVKAQGNGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPR 602

Query:   544 WHQTLEFP---DDGSPLTLHVRDHNALLAS-SSIGDCVVEYQRLPPNQMADKWIPLQG 597
             W++  EF    D  S + ++V D +       S+G   V + +   ++++D WIPL+G
Sbjct:   603 WNEIFEFDAMEDPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKG 660

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	713
cd00030	102	cd00030, C2, C2 domain	2e-22
pfam00168	85	pfam00168, C2, C2 domain	5e-19
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-17
cd00030	102	cd00030, C2, C2 domain	9e-17
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	9e-16
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-15
pfam00168	85	pfam00168, C2, C2 domain	5e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	5e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-14
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-12
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-12
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-12
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-11
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-11
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-11
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	3e-11
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	4e-11
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	6e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-10
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	4e-10
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	4e-10
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-09
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-08
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-08
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-08
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	4e-08
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	6e-08
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	6e-08
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-07
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-07
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-07
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	2e-07
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-07
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	3e-07
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	3e-07
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	5e-07
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	6e-07
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	8e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	9e-07
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-06
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-06
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	3e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-05
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-05
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	3e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	6e-05
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	7e-05
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	9e-05
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	1e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	2e-04
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	4e-04
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	5e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	6e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	8e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	0.001
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	0.001
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.001
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.001
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	0.001
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.002
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	0.002
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.003
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	0.004
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.004

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-RTKVIFKTLNPQWHQTLEFP---DDG 554
           + + ++EAR+L A DL G SDPYVKV  G  +K +TKV+  TLNP W++T EFP    + 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRL-PPNQMADKWIPL 595
             LT+ V D +       +G+  +    L    +  + W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 81.5 bits (202), Expect = 5e-19
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVIFKTLNPQWHQTLEF---PD 552
           + + ++ A++L   DL G SDPYVKV  G  K   K+TKV+  TLNP W++T  F     
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 553 DGSPLTLHVRDHNALLASSSIGDCV 577
           + + L + V D++       IG+  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF---PD 552
           + + I+ AR+L   D  G SDPYVKV        KK+TKV+  TLNP W++T EF   P 
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPP 61

Query: 553 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 592
           + + L + V D +       IG   +    L      +K 
Sbjct: 62  ELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 76.0 bits (187), Expect = 9e-17
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTAH-SPNHVWNQKFELD-EIGGG 424
           + VTV+E ++L  KD +GK DPYVK+  G K   +T+    + N VWN+ FE        
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 425 ECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL 464
           + L V+ ++++ F  D+ +G   + L  L+  G   ++W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.8 bits (182), Expect = 7e-16
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLE---FPDDGSPLT 558
           V+VE ++L   D  G SDPYVK + G+ K ++KV  KTLNPQW +  +   F D    L 
Sbjct: 5   VLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64

Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
           + V D +       IG C ++   LP  Q     + L+    G + +L+T
Sbjct: 65  IEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGE-GSLLLLLT 113

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 497 GWIELVIVEARDLVAADLR--GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG 554
           G + + +VEA+DL A D    G SDPY  +  G  + +T+ I  TLNP+W+   EFP   
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 555 SP---LTLHVRDHNALLASSSIGDCVVEYQRL---PPNQMADKWIPLQGVRK-------G 601
           +    L L + D +       +G+  +  + +        +DKWI L+  R        G
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSG 120

Query: 602 EIHV 605
           EIH+
Sbjct: 121 EIHL 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 18/121 (14%)

Query: 497 GWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF 550
           G + + ++EA+DLVA D      ++G SDPYV V+ G    ++KVI + LNP+W++  E 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 551 ---PDDGSPLTLHV----RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI 603
                 G  L + +     D +  L   SI    VE +        D+W+PL+ V+ G +
Sbjct: 61  VVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGF-----IDEWLPLEDVKSGRL 115

Query: 604 H 604
           H
Sbjct: 116 H 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKFELDEI-G 422
           + VTV+  K+L PKD +GK DPYVK+  G   K  ++T+    + N VWN+ F  +    
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 423 GGECLMVKCYNEEIFG-DENMGSAR 446
               L ++ Y+ + FG D+ +G   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 370 VTVVEGKDLMPKDKS------GKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFE--LDE 420
           + V+E +DL+ KDK       GK DPYV ++ G    +++      N  WN+ +E  +DE
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64

Query: 421 IGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 477
           + G E L ++ ++E+   D+ +G   ++L  + +    D W+PLE V +G L L++E
Sbjct: 65  VPGQE-LEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLE 120

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEI- 421
            + V ++  ++L PKDK GK DPYVK+      K  ++T+   ++ N VWN+ FE +   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 422 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 461
                L ++ Y+++ FG D+ +G   + L  L+ G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD----EI 421
           K+ V VV+ +DLMPKD  G    YV+L +    +RTRT     N VWN+K   +      
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60

Query: 422 GGGECLMVKCYNEEIFGDEN--MGSARVNLEGLV-EGSVRDIWVPLEK-----VNTGELR 473
                L V  YN+   G     +G  R++    V          PLEK        GE+ 
Sbjct: 61  LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIG 120

Query: 474 LQIEAT 479
           L++  T
Sbjct: 121 LKVYIT 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF----PDDGSPLT 558
           +V+A+DL+  D +G+S  YV++ +   KKRT+   K LNP W++ L F    P   S L 
Sbjct: 6   VVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLV 65

Query: 559 LHVRDHN 565
           L V  +N
Sbjct: 66  LEVYVYN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFP---DDGSPLT 558
           ++ A +L +AD  G SDP+VK      K  +TK I KTLNP W+++ E P      + L 
Sbjct: 5   VISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLK 64

Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL---QGVRKGEIHV 605
           + V D +       +G   ++   L P +  +  +PL    G + G + +
Sbjct: 65  VEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 505 EARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFP-DDGS-PLTLHV 561
           E R+L A D  GTSDPYVK +YG     ++K I+K LNP W +    P +D + PL + V
Sbjct: 8   EGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKV 67

Query: 562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL------QGVRKGEIHVLIT 608
            D++  L    +G   V+   L  N+  +  + L      + +    + V +T
Sbjct: 68  FDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP 551
           G++++ ++ A  L AAD+ G SDP+  ++  + + +T  I+KTLNP+W++   FP
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFP 55

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 15/123 (12%)

Query: 368 INVTVVEGKDLMPKD--KSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELD-EIGG 423
           + V VVE KDL  KD    GK DPY  L  G    +T+T  +  N  WN   E       
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 424 GECLMVKCYNE-EIFGDENMGSARVNLEGLV---EGSVRDIWVPLEKVNT-------GEL 472
            + L +  +++    G + +G   + LE +    +    D W+ L+           GE+
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122

Query: 473 RLQ 475
            LQ
Sbjct: 123 HLQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAHSP-NHVWNQKFELDEIGGGEC- 426
           + + EG++L  +D+ G  DPYVK +Y GK V +++T +   N VW++KF L  I      
Sbjct: 4   IHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTL-PIEDVTQP 62

Query: 427 LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471
           L +K ++ +    D+ MGSA V+L  L      ++ + LE  N+ E
Sbjct: 63  LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDE 108

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKV--QYGD--LKKRTKVIFK-TLNPQWHQTLEF 550
              I + I++AR+L A D+ GTSDPYVKV   Y D  ++K+  VI K TLNP ++++  F
Sbjct: 14  ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF 73

Query: 551 --PDD---GSPLTLHVRDHNALLASSSIG 574
             P +    + L + V D + L  +  IG
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 30/64 (46%), Positives = 38/64 (59%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
           I + +V A+ L+A D  GTSDPYV VQ G  KKRTK I + LNP W++   F    S   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 559 LHVR 562
           + VR
Sbjct: 63  IKVR 66

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTL 559
           ++EARDL   D  GTSDP+V+V Y      T V+ K+  P+W++  EF       SPL++
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 560 HVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
            V D + +  +  +G  V   Q L   +  + W  L 
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 23/117 (19%)

Query: 506 ARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD---DGSP------ 556
           ARDL+AAD  G SDP+ +V + +  + T+VI +TL+P W QTL F +    GSP      
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69

Query: 557 ---LTLHVRDHNALLASSSIGDCVVEY------QRLPPNQMADKWIPLQGVRKGEIH 604
              + + + D +++     +G  V +       +   P ++  +W P   + KG   
Sbjct: 70  PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKL--QWFP---IYKGGQS 121

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDG 554
           G +++ +V   +L   D   +SDPYV +  G+ K +T+VI K LNP W++ L    P+  
Sbjct: 2   GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRL 583
           +PL L V D +      S+G+  ++ + L
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPL 89

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP-----DDGSP 556
           ++V  ++L    L+G  D   KV +  +KK+T+V+   LNP W++T E+P     D    
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58

Query: 557 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595
           L + V+D+  +  +  IG   V  Q L    + +   PL
Sbjct: 59  LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPL 97

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEIGGGE 425
           KI++TVV  + L+ KDK+G  DPYV +Q GK  +RT+T     N VWN+KF  +     +
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61

Query: 426 CLMVKCYNEEI------------FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN----- 468
            + V+ ++E+               D+ +G   + +  L  G + D+W  LEK       
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLEKRTDKSAV 119

Query: 469 TGELRLQI 476
           +G +RL I
Sbjct: 120 SGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 17/111 (15%)

Query: 470 GELRLQIEATR-VDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVK--VQY 526
           GEL++   A + V        ++     G + + + EA++L A    GTSD +VK  +  
Sbjct: 2   GELKV---ALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLP 58

Query: 527 GD---LKKRTKVIFKTLNPQWHQTLEFPDDGSP-------LTLHVRDHNAL 567
                 K++T V+ K++NP W+ T  + D  SP       L L V DH+ L
Sbjct: 59  DKSKKSKQKTPVVKKSVNPVWNHTFVY-DGVSPEDLSQACLELTVWDHDKL 108

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 23/134 (17%)

Query: 488 RGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKT 539
           RG+    I   +  + + + EA++L+  D  G SDPYVK++         K++TK I KT
Sbjct: 1   RGRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT 60

Query: 540 LNPQWHQTLEFP----DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMAD 590
           LNP W++T  F     D    L++ V D      N  + S S G  V E  ++P     D
Sbjct: 61  LNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFG--VSELIKMP----VD 114

Query: 591 KWIPLQGVRKGEIH 604
            W  L    +GE +
Sbjct: 115 GWYKLLNQEEGEYY 128

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQTLEF---- 550
           I+ A+ L A D  G SDPYVK+    L        K RTK + KT NP++++TL +    
Sbjct: 21  IIRAKGLKAMDANGLSDPYVKLN---LLPGASKATKLRTKTVHKTRNPEFNETLTYYGIT 77

Query: 551 PDDGSPLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595
            +D    TL   V D +    +  +G+  +  ++L PNQ     I L
Sbjct: 78  EEDIQRKTLRLLVLDED-RFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQY--GDLKKR--TKVIFKTLNPQWHQTLEF---PDDGS 555
           I++A DL A D+ GTSDPYVKV Y   D KK+  TKV  KTLNP +++T  F     +  
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKV-YLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80

Query: 556 PLTLH--VRDHNALLASSSIGDCVV 578
             TL   V D +       IG+  V
Sbjct: 81  NKTLVFSVYDFDRFSKHDLIGEVRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFEL---DEIGG 423
           + + +VEGK+L P D +G  DPYVK + G    +++    + N  W ++F+L   D+   
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ 61

Query: 424 GECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 475
              L ++ ++++    DE +G   ++L  L       + + LE      L L 
Sbjct: 62  --ILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 494 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF 550
           SG G + +VIVE RDL   +  G SDPY +V  G  + +TKV+  TLNP+W+ +++F
Sbjct: 12  SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF 68

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 13/86 (15%)

Query: 501 LVIVEARDLVAADLRGTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQTLEFPDDGSP- 556
           L I++A +L A D  GTSDP+VK+     KK    TKV  K LNP W++T  F  +G P 
Sbjct: 20  LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGFPY 77

Query: 557 -------LTLHVRDHNALLASSSIGD 575
                  L L V D++    +  IG+
Sbjct: 78  EKLQQRVLYLQVLDYDRFSRNDPIGE 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKV---QYGDL--KKRTKVIFKTLNPQWHQTLEF 550
            G + +VI+EA++L   D+ G SDPYVK+   Q G    KK+T +  +TLNP ++++  F
Sbjct: 14  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF 73

Query: 551 ---PDDGSPLTLH--VRDHNALLASSSIGDCVV 578
               +    + L   V D++ +  +  IG  V+
Sbjct: 74  EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 503 IVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP----DD 553
           +++ARDL   D     +PYVKV     +    K+RTK + KTLNP+W+QT E+     + 
Sbjct: 22  VLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81

Query: 554 --GSPLTLHVRDHNALLASSSIGDCVVEYQ 581
                L + V D++    +  +G+ V++  
Sbjct: 82  LKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSP-- 556
           + + ++EAR LV     G  DP VKV+ G  KK T V   T  P +++   F    SP  
Sbjct: 6   VRVRVIEARQLVG----GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDE 61

Query: 557 -----LTLHVRDHNALLASSSIG----DCVVEYQRLPPNQMADKWIPL 595
                + + V D  +L + + IG    D    Y   P +    KW+ L
Sbjct: 62  LFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYD-QPDHAFLRKWLLL 108

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEF----PDDGSP 556
           +V AR+L   D  G SDPY+K++ G   +  R   I  TLNP + +  E     P + S 
Sbjct: 6   VVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN-SI 64

Query: 557 LTLHVRDHNALLASSSIG 574
           L + V D++ L +   IG
Sbjct: 65  LKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ------YGDLKK-RTKVIFKTLNPQWHQTLEFP---- 551
           I+ AR+L+  D  G+SDP+VKV+      + D+   +T+V  KTL P + ++ EF     
Sbjct: 22  ILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81

Query: 552 ---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 584
               +G+ L   V+D++ L ++   G+  +    +P
Sbjct: 82  QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 501 LVIVEARDLVAADLRGTSDPYVKVQ--YGDL---KKRTKVIFKTLNPQWHQTLEF--PDD 553
           +V+++AR+L  +D +G SDPYVKV    G     KK+T V   TLNP +++   F  P +
Sbjct: 18  VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77

Query: 554 GSP---LTLHVRDHNALLASSSIGDCVV 578
                 L + V D +++  +  IG  V+
Sbjct: 78  QLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH---VWNQKFELD-EIGG 423
           + V VV  ++L PKD +GK DPY+K++ GK     R  + PN    V+ + FEL+  + G
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 424 GECLMVKCYN-EEIFGDENMGSARVNLE 450
              L +   + + +  D+ +G   ++LE
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 496  NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFP--- 551
            +G++ +++    +L ++D  G SDP+VK+   +    +TKV+ KTLNP W++        
Sbjct: 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 552  DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKV 611
                 LT++V D ++   +  +G   ++  +L P    +  IPL G  K  I +  T   
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG--KTFIVLDGT-LH 1155

Query: 612  PELDKRTSIDSDSSSTRAHKIS 633
            P  + R S  + + S +   + 
Sbjct: 1156 PGFNFR-SKYALNVSRKEGILG 1176

Length = 1227

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 11/115 (9%)

Query: 503 IVEARDLVAADLRGTSDPY--VKVQYGDLKKRTKVIFKTLNPQWHQ--TLEFPDDGSPLT 558
           IVE ++L A D+ G+SDPY  VKV   ++  RT  ++KTLNP W +  T+  P     ++
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVD-NEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVS 64

Query: 559 LHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQGVR-----KGEIHVLI 607
            +V D + L     IG   +  + +  + +  D W+ L  V      +GEIH+ +
Sbjct: 65  FYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 501 LVIV-EARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP 551
           +V V + R+L   D     DPYV++     +    +++T V    LNP + +T EFP
Sbjct: 19  IVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP 75

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 369 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKF 416
            VTV+E +DL+P DK+   + +VK Q G  V RTR +   + N  WN++ 
Sbjct: 3   RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEEL 52

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 499 IELVIVEARDLV---AADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DD 553
           +E+ I+ A+ L    A D RG++D Y   +YG    RT+ +  + NP+W++   +P  D 
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP 61

Query: 554 GSPLTLHVRDHNALLASSSIGDCV-VEYQRLPPNQMADKWI-----PL-----QGVRK-G 601
            + LT+ V D++      ++   V +   R+  + + D  +     PL      GV+K G
Sbjct: 62  CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMG 121

Query: 602 EIHV 605
           E+  
Sbjct: 122 ELEC 125

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 25/132 (18%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAHSPNHVWNQKFELDE 420
           ++   V+E +DL PKD++G  DP+V++ Y        +V+++         WN+ FE + 
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPR-----WNEVFEFEL 55

Query: 421 IGGG-ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN--TGELRLQIE 477
           + G    L V+ ++ ++         + +  G V  S++     L++     G  RL  +
Sbjct: 56  MEGADSPLSVEVWDWDLVS-------KNDFLGKVVFSIQ----TLQQAKQEEGWFRLLPD 104

Query: 478 ATRVDDNEGSRG 489
               +++ G+ G
Sbjct: 105 PRAEEESGGNLG 116

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 503 IVEARDLVAAD-LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQ---TLEFPDD---GS 555
           +V ARDL   D     +D +V+V++G    +T V+ K+LNP W+      E  D+     
Sbjct: 5   VVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64

Query: 556 PLTLHVRDHNALLASSSIG----DCVVEYQRLPPNQMADKWIPL 595
           PL + V DH+   A+ +IG    D      +   +Q++  W P+
Sbjct: 65  PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISG-WFPI 107

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 511 AADLRG----TSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVR 562
           A  L G    ++D YVKV +G  +KRT+VI+   NP+W+ T +F       G  L   V 
Sbjct: 37  ATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVW 96

Query: 563 DHNALLASSSIGDCVVE 579
           D +       +G C V 
Sbjct: 97  DRDNGWDDDLLGTCSVV 113

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKV----QYGDLKKRTKVIFK-TLNPQWHQTLEF- 550
           G + L I++AR+L A D+ G SDPYVKV    +   LKK+   + K TLNP +++ L F 
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 551 --PD--DGSPLTLHVRDHNALLASSSIGDCVV 578
             P+  D   L + V D++ +  +  IG C V
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVCRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLK----KRTKVIFKTLNPQWHQTLEFP 551
           ++E RDL A    GT DP+ +V          KRTKV  KT NP++ +   F 
Sbjct: 5   VLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE 56

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKT-LNPQWHQTLEF---PD 552
           G + +V+++AR+L         DPY  ++ G + K+TK  F+   +P+W + L F    D
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 553 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ--GVRKGEIHVLIT 608
               L + V D +       IGD  V+          D W  L   G   GE+++ +T
Sbjct: 61  KKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQKFEL-- 418
            ++ T++  K L   D +G  DPYVKL            RT+T H + N  +N+      
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 419 --DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL 464
             +E    + L +   +E+ FG++ +G  R+ L+ L     +   + L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 12/74 (16%)

Query: 505 EARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT----LH 560
           E ++LV        DPYV+V +   K +T V   + NP+W++ + FP+   PL     + 
Sbjct: 30  EKKELV--------DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81

Query: 561 VRDHNALLASSSIG 574
           +RD + +     IG
Sbjct: 82  IRDWDRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 502 VIVEARDLVAADLR-GTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQT---LEFPDD 553
            I  A DL  AD   G+SDPYV   +    K    T++I K LNP W +T   L  PD+
Sbjct: 6   TIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDE 64

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 361 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQ 414
           IS    K+ V V E K+L+P D +G  DPYVKL+       +  Q+T+T     N VWN+
Sbjct: 8   ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNE 67

Query: 415 KFELD 419
            F  D
Sbjct: 68  TFTFD 72

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKV-IFKTLNPQWHQTLEF----PDDGSPL 557
           ++EA+DLV +D     + +VK Q G+   RT+    +  NP W++ L F    P +   L
Sbjct: 6   VIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFED-HL 64

Query: 558 TLHVRDHNALLASSSIGDCVVE----YQRLPPNQMADKWIPLQGV 598
            L V D         +G  V+      +R+    +  +W  L+  
Sbjct: 65  ILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAH---SPNHVWNQKFELDEIGG 423
           + V V+  ++L   D++GK DP+VK    G+ V +T+T     +P  VWN+ FE+     
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNP--VWNESFEVPVPSR 58

Query: 424 GEC-LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 473
               L V+ Y+ +  G D+ +GSA ++L  L      ++ +PL+    G+L 
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLG 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 497 GWIELVIVEARDLVAAD-LRGTSDPYVKVQYGDLKK--RTKVIFKTLNPQWHQTLEFP-- 551
           G + + I  AR L  +D + GT DPYV     + ++  RTKV   T NP W++T      
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 552 DDGSPLTLHVRDHNALLASSSIGDCVVE 579
               PL L V D N       IG    +
Sbjct: 62  SLTEPLNLTVYDFNDKRKDKLIGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTL 559
           +V+AR L A     ++DP V+V+ G+ K  TK I +T NP+W+Q   F  D   GS L +
Sbjct: 6   VVKARGLPA----NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61

Query: 560 HVRDHNALLASSSIGDCVVEYQ----RLPPN-QMADKWIPLQGVRKGE 602
            V D         +G    +      R+PP+  +A +W  L+  +KG 
Sbjct: 62  SVWD-KDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED-KKGG 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 20/113 (17%)

Query: 363 RTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF 416
            T  ++ V V++ ++L P D  G  DPYVK   LQ GK +++ +T+    + N V+N+ F
Sbjct: 11  PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAF 70

Query: 417 -------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 461
                  +L+E+     L++   +++  G +E +G  +V L     G   + W
Sbjct: 71  SFDVPAEQLEEV----SLVITVVDKDSVGRNEVIG--QVVLGPDSGGEELEHW 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFP-DDGSPLT 558
           IV A +L A    G SDPYV +   + K+R   T+ I+ TLNP+W +  E     G PL 
Sbjct: 7   IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66

Query: 559 LH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIP 594
           +   V D + +      G   +   +L P +  D  +P
Sbjct: 67  ISATVWDRSFVGKHDLCGRASL---KLDPKRFGDDGLP 101

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 500 ELVIVEARDLVAAD-LRGTSDPYVKVQY------GDLKKRTKVIFKTLNPQWHQTLEFP 551
           E+ I E R+L  AD  +  S+PYVKV Y         K++T V   T NP +++TL++ 
Sbjct: 17  EVHIKECRNLAYADEKKKRSNPYVKV-YLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH 74

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF 550
           ++ A ++   DL  T D YV++      D KKRTK I  ++NP W++T EF
Sbjct: 6   VLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEF 56

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 425
            + V VV G +L  +D +   DPYV L  G    +TR    + N VWN++  L       
Sbjct: 3   LLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 426 CLMVKCYNEEIF-GDENMGSARVNLEGLVE 454
            L ++ ++++ F  D++MG A ++LE LVE
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 507 RDL-VAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEF--PD-DGSPLTLHV 561
           + L  +    G   PY ++   G L   T+V  KT NP W+ + EF   D   S +T+ V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVV 60

Query: 562 RD----HNALLASSSI--GDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
           +D    H+ +L S SI   D +          +  +W PL G  +G I +
Sbjct: 61  KDDRDRHDPVLGSVSISLNDLIDA------TSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQ--KFELDEIGG 423
           V V++ ++L  K K  K DPY  L+ G + ++T+T       P   W++  +FE+ E   
Sbjct: 5   VVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHP--EWDEELRFEITE--D 60

Query: 424 GECLM-VKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL--EKVNTGELRLQ 475
            + ++ V  ++++    + +G   V+L   ++    D W  L  +    GE+ L+
Sbjct: 61  KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLE 115

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF 550
           I+   +L A D  G SDP+VK+          K +T+V  KTLNP++++   +
Sbjct: 19  IIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 503 IVEARDLVAADLR-GTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQTLEF----PDDG 554
           I+E RDL A D + GTSDPYVK+Q    K+   +T+V+ KT NP + +T  F     +  
Sbjct: 22  IIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQL 81

Query: 555 SPLTLH 560
             L+LH
Sbjct: 82  QDLSLH 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 368 INVTVVEGKDLMPKDKSGKCDPYVK--LQYG-KIVQRTRTA---HSPNHVWNQKFELD 419
           I V +++ ++L   D +G  DPYVK  L Y  K V++ +T     + N V+N+ F  +
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 26/111 (23%)

Query: 375 GKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH---SPNHVWNQ--KFELDEIGGGECLMV 429
            +DL+  DKSG  DP+ ++ +    Q T       SP   W+Q   F+  E+ G      
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSP--TWDQTLIFDEVELYGS----P 63

Query: 430 KCYNE-------EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 473
           +   +       E+F  +++G          E   R +  PL K++  E  
Sbjct: 64  EEIAQNPPLVVVELFDQDSVGKD--------EFLGRSVAKPLVKLDLEEDF 106

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 13/118 (11%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKL---QYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGE 425
           + +V  ++L     +G  DPYV L      + + +TRT   + N  W+++FEL+   G  
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 426 C-LMVKCYNEEIFGDENM-GSARVNLEGLV---EGSVRDIWVPLEKVNT-GELRLQIE 477
             +    ++    G  ++ G A + L+      +G  R+IW+ L   +T G L L++ 
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL---DTQGRLLLRVS 119

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQK--FELDEIGGGE 425
           V ++  K L   D  GK DPYV +Q     ++++ A     N  WN+K  F ++  G G 
Sbjct: 5   VLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64

Query: 426 C--LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVR 458
              L+++  +++ F  D+ +G A ++L+GL E  V 
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVE 100

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTL----EFP 551
           G +E++++ A+ L   D  G  DPYV +Q    ++++KV      NP+W++      E+P
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 552 DDG--SPLTLHVRDHNALLASSSIGD 575
             G  + L L + D +       IG+
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGE 86

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 19/118 (16%)

Query: 500 ELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDDGSP-- 556
            L I+EA++L +   +GT DPY  V    ++  RTK + K LNP W +   F DD  P  
Sbjct: 3   RLRILEAKNLPS---KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVF-DDPPPDV 57

Query: 557 ----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHV 605
               L+ + +D  +      IG   V   +L   Q  D+W PL  V      +G + +
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRL 113

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 495 GNGWIELVIVEARDLVA-ADLRGTSDPYVKV------QYGDLKKRTKVIFKTLNPQWHQT 547
             G +E+ ++ AR LV     +    PYVKV      +    KK+TK+  KTL+P + Q 
Sbjct: 27  KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQ 85

Query: 548 LEFPDDGSPLTLHV 561
           L F    +  TL V
Sbjct: 86  LVFDVSPTGKTLQV 99

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQ--YGD---LKKRTKVIFKTLNPQWHQTL--EFP 551
           + +V+++AR L   D+ G +DPYVKV   YG     KK+T V   TLNP ++++   + P
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 552 DDGSP---LTLHVRDHNALLASSSIGDCV 577
            +      +   V D + +  +  IG  V
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 37/127 (29%)

Query: 501 LVIVEARDLVAADLRGTSDPY------VKVQYG-----------------------DLKK 531
           + ++EA+ L+A D+ G SDPY         +                            K
Sbjct: 32  VTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91

Query: 532 RTKVIFKTLNPQWHQTLEFP-DDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQM 588
            T+V  +TLNP W++T  F  +D S   LH+   DH+       +G   +  + LP   +
Sbjct: 92  VTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGL 147

Query: 589 ADKWIPL 595
            D W  L
Sbjct: 148 -DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWN 413
           ++ V +VEG+DL P + +GK DPY ++  G    +T+  + + N  WN
Sbjct: 16  RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWN 63

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEFP--DD 553
           G + L I +A DL   +  G  DPYV+V   G +K RT  I  TLNP W + L  P    
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 554 GSPLTLHVRDHNALLASSSIGDC 576
              +TL V D+  +    S+G  
Sbjct: 61  NQKITLEVMDYEKVGKDRSLGSV 83

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 374 EGKDLMP-KDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKC 431
           +G D++  KD  G  D Y   +YG    RTRT   S N  WN+++          L V  
Sbjct: 10  QGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGV 69

Query: 432 Y-NEEIFGDEN------MGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQ 475
           + N +    E       +G  R+ L  L +  V     PL  +N       GEL   
Sbjct: 70  FDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTKVIFK--TLNPQWHQTLEFP---- 551
           +E+ I+ A DL   +L G    Y  V      K+ T V     T NP W++TL FP    
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGT-NPTWNETLRFPLDER 60

Query: 552 ---DDGSPLTLHVRDHNALLASSSIGDCVV 578
                   LT+ V      L    IG+  V
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRV 90

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 501 LVIVE-ARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF----PDDGS 555
            V ++ A++L  A       PYV++  G   +++KV  +T NP W +   F    P++  
Sbjct: 3   FVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQE 62

Query: 556 PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM--ADKWIPLQG 597
            L + V+D        S+G   +    L        D+  PL  
Sbjct: 63  -LEIEVKDDK---TGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF 550
           +++AR+L   D  GT+DPY KV+        K++K+  KTLNP++ ++  F
Sbjct: 22  LIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 503 IVEARDLVAADLR-GTSDPYVKVQ-YGDL----KKRTKVIFKTLNPQWHQTLEFPDD--- 553
           +++ +DL AAD +   SDPYVK     D     K++T V  KTLNP +++TL +  +   
Sbjct: 21  VIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80

Query: 554 --GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
                L L V   ++L  +S +G+  V+      +     W PLQ
Sbjct: 81  LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 501 LVIVEARDLVAADLRGTSDPYVKVQYGDLKK-------RTKVIFKTLNPQWHQTLEF 550
           + ++   DL   D+ G SDPYVK+   D          +TK I KTLNP+W++   F
Sbjct: 4   VKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 497 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD 553
           G +E+ I  A  L  +D  + GT DPY+ V + D +  +T+V   TLNP W++T     +
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN 495

Query: 554 --GSPLTLHVRDHNALLASSSIGD 575
               PL L + D N+  +   +G 
Sbjct: 496 SFTDPLNLSLYDFNSFKSDKVVGS 519

Length = 1227

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 382 DKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFE--LDEIGGGECLMVKCYNEEIF 437
            K+G   PY +L   GK+V  TR    + N  WN   E  + +      + V   ++   
Sbjct: 8   SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSR-VTVVVKDDRDR 66

Query: 438 GDENMGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRL 474
            D  +GS  ++L  L++  SV   W PL     G +R+
Sbjct: 67  HDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 515 RGTSDPYVKVQYGDLKK----RTKVIFKTLNPQWHQTLEFP--DDGSPLTLHVRDHNALL 568
           + TSDPY  V   DL      RT+VI  + NP W+++         S +   V+D N ++
Sbjct: 55  KITSDPYATV---DLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKD-NDVV 110

Query: 569 ASSSIGDCVVEYQRLPPNQMADKWIPL 595
            +  IG   +  + L   +  + W+P+
Sbjct: 111 GAQLIGRAYIPVEDLLSGEPVEGWLPI 137

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEFPD-DGSP 556
           + L ++ A  L   DL    DP+  +   G     T V  KTL+P+W++  +      S 
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 557 LTLHVRDH 564
           +T+ V D 
Sbjct: 62  ITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQ-YGKIVQRTR--TAHSPNHVWNQK--FELDE- 420
            + +T++  +DL   +  GK   Y  +       Q T        N  WN+   F LDE 
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 421 --IGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGS 456
               G   L ++ Y E    GD+ +G  RV L+ L++G+
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGA 99

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 20/105 (19%)

Query: 506 ARDLVAADLRGTS-DPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
           A++L    L G+  DPYVK  Y   D     K++TKV+ KT NP +++ L +  DG P+ 
Sbjct: 22  AKNLPL--LDGSDPDPYVKT-YLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY--DGLPVE 76

Query: 559 --------LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 595
                   + V  H++L+ +  +G   +  ++L  +Q  +KW PL
Sbjct: 77  DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQK--FELDEIGGGEC 426
           VTV++ + L+ K KSG  D YV +Q GK    T         VW ++  FEL  +  G  
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 427 ----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDI--WVPLE------KVNTGELR 473
               L +   +  + G D+ +G   + L  L E   R    W  LE          GE+ 
Sbjct: 63  NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIE 122

Query: 474 LQI 476
           + I
Sbjct: 123 VDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 369 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFE 417
            V V+    L   D  GK DP+  L+      +T T + + N  WN+ F 
Sbjct: 4   QVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFT 53

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 371 TVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD---EIGGGEC 426
            VV  K+L      GK D   K+ +  + ++TR      N VWN+ FE          E 
Sbjct: 1   LVVSLKNL--PGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58

Query: 427 LMVKCYN-EEIFGDENMGSARVNLEGLVEGS 456
           L +   + E++  +  +GSA V+L+ LV   
Sbjct: 59  LEIVVKDYEKVGRNRLIGSATVSLQDLVSEG 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 362 SRTGR-KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD 419
           +R G   + VTV+    L   D     D YVK+ +G   +RT    + N+  WN  F+  
Sbjct: 23  TRRGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG 81

Query: 420 --EIGGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRD 459
             E+  G  L  + ++ +   D+++ G+  V  E    G   D
Sbjct: 82  SVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE---AGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 39/149 (26%)

Query: 370 VTVVEGKDLMPKDKSGKCDPY--VKLQYGK--IVQRT---RTAHSPNHVWNQKFELDEIG 422
           V V+E +DL  K  +G CDP+  V L Y      +RT   +  ++P   +++ F  +   
Sbjct: 3   VRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNP--RFDEAFYFELTI 59

Query: 423 GGE----------------CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLE 465
           G                   L V+ ++   + GD+ +G  R+ L+GL +      W    
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAW---- 115

Query: 466 KVNTGELRLQIEATRVDDNEGSRGQNIGS 494
                   LQ           S   ++GS
Sbjct: 116 ------YFLQPREAP--GTRSSNDGSLGS 136

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 513 DLRGTSDPYVKVQ-YGD-----LKKRTKVIFK-TLNPQWHQTLEFP 551
           D     DPYV+V+ +G       K +TKV+     NP W++T EF 
Sbjct: 20  DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD 65

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 26/126 (20%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQ--TLEFPDDGSP---- 556
           +++AR L+     GT+D YV +Q G  K  T V  KT +P W +  + E P   S     
Sbjct: 5   VLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNR 64

Query: 557 --LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD-------KWIPLQGVR------KG 601
             L L V   N L     +G        +P N + +       +W  L+         +G
Sbjct: 65  ATLQLTVMHRNLLGLDKFLG-----QVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERG 119

Query: 602 EIHVLI 607
           EI V I
Sbjct: 120 EIEVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPY----VKLQYGKIVQRTRTAHSPNHVWNQKFELDEI 421
           RK+ VTV+  +D+  KD+ G    +    V L   K   +T+    PN V+N+ F    +
Sbjct: 16  RKLTVTVIRAQDIPTKDRGG-ASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRV 74

Query: 422 GGGE----CLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLE 465
              E     L  + Y  E    E + G   V L  L       +W+ LE
Sbjct: 75  EPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 496 NGWIELVIVEARDLVAAD----LRGTS------DPYVKVQYGDLK-KRTKVIFKTLNPQW 544
            G +++ I EA DL   D               DPYV +   D    +T    KT +P W
Sbjct: 3   TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVW 62

Query: 545 HQTLEFPDD---GSPLTLHVRDHNALLASSS-IGDCVVEYQRLPPNQMADK--WIPLQGV 598
           ++  EF  +   G  L L V  H+A +     + +C + ++ L          W+ L+  
Sbjct: 63  NE--EFTTEVHNGRNLELTVF-HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-- 117

Query: 599 RKGEIHVLIT 608
            +G++HV I 
Sbjct: 118 PQGKLHVKIE 127

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 503 IVEARDLVAADLRGTSDPY--VKVQYGDLK---KRTKVIFKTLNPQWHQTLEFP 551
           ++E  DL   +  GT DPY  V + Y + K   KRTKV  KT NPQ+ +   F 
Sbjct: 6   VIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD 57

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 532 RTKVIFKTLNPQWHQTLEF--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA 589
           RTK + K+L P + +   F  P     L+ ++ D + L   S IG   ++ + L      
Sbjct: 37  RTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGK 96

Query: 590 DKWIPLQGVR-----KGEIHV 605
           D W PLQ V      +G++H+
Sbjct: 97  DTWFPLQPVDADSEVQGKVHL 117

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	713
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.96
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.94
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.92
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.89
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.86
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.85
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.84
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.84
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.82
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.82
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.82
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.8
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.8
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.8
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.79
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.79
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.79
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.79
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.79
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.79
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.79
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.78
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.78
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.78
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.78
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.78
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.77
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.77
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.76
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.76
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.76
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.76
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.75
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.75
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.75
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.75
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.74
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.74
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.74
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.74
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.74
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.73
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.73
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.73
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.73
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.73
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.72
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.72
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.72
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.72
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.72
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.72
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.71
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.71
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.71
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.71
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.71
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.71
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.71
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.71
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.71
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.71
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.7
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.7
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.7
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.7
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.7
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.7
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.7
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.69
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.69
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.68
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.68
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.68
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.68
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.68
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.68
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.67
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.67
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.67
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.67
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.66
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.66
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.66
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.66
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.65
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.65
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.65
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.65
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.65
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.65
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.65
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.64
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.64
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.64
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.64
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.64
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.64
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.63
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.63
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.63
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.63
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.62
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.62
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.62
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.62
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.62
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.62
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.62
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.61
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.61
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.6
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.6
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.6
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.6
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.6
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.59
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.59
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.59
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.59
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.59
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.59
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.59
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.59
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.58
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.57
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.57
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.57
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.56
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.56
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.56
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.56
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.56
PLN03008	868	Phospholipase D delta	99.55
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.55
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.54
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.54
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.54
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.53
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.53
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.52
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.52
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.51
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.5
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.49
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.48
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.48
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.48
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.48
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.47
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.47
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.47
PLN03008	868	Phospholipase D delta	99.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.47
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.46
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.45
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.45
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.45
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.45
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.44
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.44
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.44
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.42
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.41
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.41
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.41
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.39
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.39
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.38
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.34
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.34
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.34
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.33
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.29
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.25
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.25
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.24
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.18
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.17
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.1
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.03
PLN02223	537	phosphoinositide phospholipase C	99.02
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.0
PLN02270	808	phospholipase D alpha	98.97
PLN02270	808	phospholipase D alpha	98.96
PLN02952	599	phosphoinositide phospholipase C	98.92
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.88
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.85
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.85
PLN02230	598	phosphoinositide phospholipase C 4	98.85
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.83
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.83
PLN02222	581	phosphoinositide phospholipase C 2	98.8
PLN02223	537	phosphoinositide phospholipase C	98.78
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.74
PLN02228	567	Phosphoinositide phospholipase C	98.73
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.71
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
PLN02952	599	phosphoinositide phospholipase C	98.61
PLN02230	598	phosphoinositide phospholipase C 4	98.56
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.51
PLN02222	581	phosphoinositide phospholipase C 2	98.5
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.48
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.47
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.44
PLN02228	567	Phosphoinositide phospholipase C	98.43
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.42
PF10296	91	DUF2404: Putative integral membrane protein conser	98.21
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.21
PLN02352	758	phospholipase D epsilon	98.2
PLN02352	758	phospholipase D epsilon	98.13
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.12
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	98.03
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.87
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.86
PLN02964	644	phosphatidylserine decarboxylase	97.73
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.25
PLN02964	644	phosphatidylserine decarboxylase	97.19
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.13
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.1
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.09
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.8
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.74
PF15627	156	CEP76-C2: CEP76 C2 domain	96.34
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.44
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.19
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.75
PF15627	156	CEP76-C2: CEP76 C2 domain	94.74
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.66
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.36
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.23
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.13
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.05
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.04
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.03
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.99
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.61
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.07
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	91.65
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	91.12
KOG1452	442	consensus Predicted Rho GTPase-activating protein	90.94
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.36
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	89.88
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	89.77
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.3
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.18
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	88.69
KOG1452	442	consensus Predicted Rho GTPase-activating protein	86.49
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	85.7
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	85.47
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.02
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	83.73
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	83.64
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	83.4
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	81.55

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=2e-66  Score=585.57  Aligned_cols=547  Identities=22%  Similarity=0.307  Sum_probs=446.2

Q ss_pred             hHHHHHHHhhcCCcccceEEEeeeecCCCCCceeeeeeEeCCCCCEEEEEEeEEeccCCceEE--------------EEE
Q 005132            4 HLLLKKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL--------------LLA   69 (713)
Q Consensus         4 ~~~ve~~l~~~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~--------------l~~   69 (713)
                      -+.||+.|.++.|+||++++|++||||++||||.+||+|+++++|.+.|||+|+|+++|++++              |.+
T Consensus       246 ~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~~~~r~~vn~kIsL~v  325 (1227)
T COG5038         246 VDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVV  325 (1227)
T ss_pred             HHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhhHHHhhhcCcceeEEE
Confidence            468999999999999999999999999999999999999999999999999999999999987              888


Q ss_pred             eecCCccc-eeeEEEEeeEEEeEEEEEEEee-----eeEEEEEeecCCeEEE-eeeecCCCCCccCCccCcChHHHHHHH
Q 005132           70 KLAKPLLG-TAKIVINSLHIKGDLLVMPILE-----GKAVLYSFVSIPDVRI-GVAFGSGGSQSLPATELPGVSNWLARL  142 (713)
Q Consensus        70 ~l~~~~~~-~~~i~v~~~~~~G~~rv~~~l~-----~~~v~~sf~~~P~v~~-~~~~g~~~~~~~~~~~~Pgl~~~~~~~  142 (713)
                      ++|+.... ++||+|+++.|+|++|++..|+     ++.|.+||||.|+||| ..++|.+ -.+++||+||||++||+++
T Consensus       326 ~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~-~~g~dI~~iPGL~~fI~~~  404 (1227)
T COG5038         326 KKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGD-FFGVDIFAIPGLSRFIQEI  404 (1227)
T ss_pred             EeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCC-ccceeEecCccHHHHHHHH
Confidence            89988776 9999999999999999999999     9999999999999998 7788766 6678899999999999999


Q ss_pred             HHHHhhcceecCcceeeccccccc----cccccccEEEEEEEeeCCCCCCC--CCCCCcccccccCCCCccccccCCCCc
Q 005132          143 INETLVKTLVEPRRRCYSLPAVDL----RKKAVGGIVYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDL  216 (713)
Q Consensus       143 i~~~l~~~~v~P~~~~~~l~~~~l----~~~~~~GvL~V~v~~A~~L~~~~--~~~~~~~~~~~~~~dp~~~~~~~~k~~  216 (713)
                      |+++|++||++|++  ++|+..++    ...|+ |||.|+|.+|++|+..+  ..+.                      +
T Consensus       405 i~~~l~pml~~Pns--l~idi~~~m~~~s~~aI-GVv~vkI~sa~~lk~~d~~i~~~----------------------v  459 (1227)
T COG5038         405 INSTLGPMLLPPNS--LTIDISQIMAGDSGTAI-GVVEVKIKSAEGLKKSDSTINGT----------------------V  459 (1227)
T ss_pred             HHhhcCCeeeCCce--EEEcHHHhhccccCCee-EEEEEEEeeccCcccccccccCC----------------------C
Confidence            99999999999999  66655664    23455 99999999999999877  2232                      3


Q ss_pred             CcEEEEEeC--cEEEEeecCCCCCCcccceEEEEEecCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecC
Q 005132          217 TTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIG  294 (713)
Q Consensus       217 dpyv~v~~g--~~~~tt~i~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~  294 (713)
                      |||+++.+.  ...||++++++.||+||||||+++++.+++|.++|||++. ..+|+.+|++.++|..|.+++..     
T Consensus       460 Dpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~-~~sd~vvG~~~l~L~~L~~~~~~-----  533 (1227)
T COG5038         460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS-FKSDKVVGSTQLDLALLHQNPVK-----  533 (1227)
T ss_pred             CceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc-cCCcceeeeEEechHHhhhcccc-----
Confidence            889999983  3457888899999999999999999999999999999887 36888999999999999986531     


Q ss_pred             CCCccccccccccCCeeeeeeccCCcceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEE
Q 005132          295 PDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVE  374 (713)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~  374 (713)
                                  .+...++.  ...++.|+|.+++.+-+...+... .        ..+.+  | .+....|++.+++.+
T Consensus       534 ------------~ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~~-~--------~~s~e--~-~ed~n~GI~k~tl~~  587 (1227)
T COG5038         534 ------------KNELYEFL--RNTKNVGRLTYDLRFFPVIEDKKE-L--------KGSVE--P-LEDSNTGILKVTLRE  587 (1227)
T ss_pred             ------------ccceeeee--ccCccceEEEEeeeeecccCCccc-c--------ccccC--C-cccCCcceeEEEeec
Confidence                        11222221  234467999988754321111111 0        00111  1 122234799999999


Q ss_pred             eEcCCCCCCCCCCCcEEEEEEC-CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEEEEeccc
Q 005132          375 GKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEG  451 (713)
Q Consensus       375 a~~L~~~~~~g~~dpyv~v~l~-~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~~i~l~~  451 (713)
                      +++|.... ......+++++++ +.++.|++. .+.+|.||+.+...+.+. ...+.+.++|..  ..+.+|+...+|.+
T Consensus       588 ~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~  664 (1227)
T COG5038         588 VKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPD  664 (1227)
T ss_pred             cccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCceeccccccchH
Confidence            99996432 2233344888885 567888988 999999999999998875 778999999876  36788888899988


Q ss_pred             cccCC-eeeeeeeceecccceEEEEEEEEeecCCCCCCCCC-CCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe
Q 005132          452 LVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN-IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL  529 (713)
Q Consensus       452 l~~~~-~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~-~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~  529 (713)
                      +.... ....||++. .++|+|.++..|.|+....++.... +..+.|.+++.|..|.+|......+.+|||++|.+++.
T Consensus       665 li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~  743 (1227)
T COG5038         665 LIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNL  743 (1227)
T ss_pred             hhhccccceEEEEcC-CCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecce
Confidence            87554 467899998 5789999999999998876655544 77899999999999999998888999999999999884


Q ss_pred             -EEEEEeeeCCCCCeeeeEEEEec--CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCC---CceeeE-------EEc-
Q 005132          530 -KKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN---QMADKW-------IPL-  595 (713)
Q Consensus       530 -~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~---~~~~~w-------~~L-  595 (713)
                       +++|-....|+||+|||..+.++  ..+.+.++++|++..+.|..+|++.++.+++...   ......       -+| 
T Consensus       744 ~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~  823 (1227)
T COG5038         744 VKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS  823 (1227)
T ss_pred             eEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccc
Confidence             77999999999999999999998  4677999999999999999999999999887541   111111       112 


Q ss_pred             --CCCCCcEEEEEEEEEecC
Q 005132          596 --QGVRKGEIHVLITRKVPE  613 (713)
Q Consensus       596 --~~~~~G~i~~~l~~~~p~  613 (713)
                        ....+|++.+.+.| .|.
T Consensus       824 ~~~~~~~~tit~~~~f-~p~  842 (1227)
T COG5038         824 LTGKKVKGTITYKCRF-YPA  842 (1227)
T ss_pred             cccCCcceeEEEEEEE-Eee
Confidence              12457999999999 443

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=260.93  Aligned_cols=217  Identities=32%  Similarity=0.495  Sum_probs=191.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C-CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      ..|.|+|.+|++|+..+..|.+||||++++  + +.+++|++. +++||.|||+|.|.+...   ...|.+.|||.|++ 
T Consensus       167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs  246 (421)
T KOG1028|consen  167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS  246 (421)
T ss_pred             CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence            379999999999999997788999999999  3 468999999 999999999999996553   78999999999999 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceec------ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccc
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA  511 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~  511 (713)
                      ++++||++.++|..+........|.++...      ..|+|.++++|.              +..|.|+|.|++|++|..
T Consensus       247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~  312 (421)
T KOG1028|consen  247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKS  312 (421)
T ss_pred             cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCc
Confidence            999999999999998876667789998753      137999999999              678999999999999999


Q ss_pred             cccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          512 ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       512 ~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      .+..+.+||||++++-.     .+++|.+.++++||+|||+|.|.++     ...|.|+|||+|.++++++||++.+...
T Consensus       313 ~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~  392 (421)
T KOG1028|consen  313 MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD  392 (421)
T ss_pred             ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC
Confidence            99999999999999943     3679999999999999999999874     5689999999999999999999999876


Q ss_pred             e-----------c-CCCCceeeEEEcC
Q 005132          582 R-----------L-PPNQMADKWIPLQ  596 (713)
Q Consensus       582 ~-----------l-~~~~~~~~w~~L~  596 (713)
                      .           + .++.+..+|+.|.
T Consensus       393 ~~~~~~~hW~~m~~~p~~pv~~wh~l~  419 (421)
T KOG1028|consen  393 STGEEVRHWQEMLNSPRKPVAQWHSLR  419 (421)
T ss_pred             CCchHHHHHHHHHhCccCceeeeEecc
Confidence            4           1 2456777888775

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.4e-27  Score=255.38  Aligned_cols=214  Identities=23%  Similarity=0.295  Sum_probs=186.9

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCee
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w  544 (713)
                      ..|+|.+++.|.              .....|.|+|++|++|++.+..|.+||||++++..   .+.+|++.++|+||+|
T Consensus       152 ~~G~l~fsl~Yd--------------~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f  217 (421)
T KOG1028|consen  152 AVGNLQFSLQYD--------------FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF  217 (421)
T ss_pred             eeeeEEEEEEec--------------ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence            469999999998              78899999999999999999888999999999976   3679999999999999


Q ss_pred             eeEEEEec-----CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEEEecC
Q 005132          545 HQTLEFPD-----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE  613 (713)
Q Consensus       545 ne~~~f~v-----~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~~~p~  613 (713)
                      ||+|.|.+     ...+|.+.|||+|+|+++++||++.++|..+........|.+|...      ..|||+++++| +|+
T Consensus       218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y-~p~  296 (421)
T KOG1028|consen  218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY-LPT  296 (421)
T ss_pred             ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe-ecC
Confidence            99999996     4789999999999999999999999999999887778899999641      23799999999 998


Q ss_pred             Cccc----------cCCCC---CCCcceeeecccchhhhhhhhhccccCCch-hhhhhhhhcCccchhHHHHHHHHHHHH
Q 005132          614 LDKR----------TSIDS---DSSSTRAHKISGQMKQMMVKFQSLIDDDNL-EELSTALSELETLEDSQEEYMVQLETE  679 (713)
Q Consensus       614 ~~~~----------~~~~~---~~p~~kv~~~~~~~r~~l~k~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (713)
                      ++++          ..++.   .|||+|+++++++.|  ++|+||+++++++ |+||++|.|..+.+++++.+++-...+
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~--~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR--LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce--eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            7766          23333   389999999999977  9999999999999 999999999999999999877733333


Q ss_pred             HHHhhhhhhhhcccccccCC
Q 005132          680 QMLLLNKIKELGQEIINSSP  699 (713)
Q Consensus       680 ~~~~~~k~~~~~~~~~~~~~  699 (713)
                      .+ .+++++.+|+.++|...
T Consensus       375 ~d-~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  375 HD-TLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cc-cccccceeeEEEecCCC
Confidence            33 37788899999999865

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.92  E-value=7.5e-23  Score=233.24  Aligned_cols=464  Identities=16%  Similarity=0.213  Sum_probs=308.2

Q ss_pred             eEEEEEeecCCeEEE--eeeecCCCCCcc--------CCccCcChHHHHHHHHHHHhhcceecCcc-----eeecc--cc
Q 005132          101 KAVLYSFVSIPDVRI--GVAFGSGGSQSL--------PATELPGVSNWLARLINETLVKTLVEPRR-----RCYSL--PA  163 (713)
Q Consensus       101 ~~v~~sf~~~P~v~~--~~~~g~~~~~~~--------~~~~~Pgl~~~~~~~i~~~l~~~~v~P~~-----~~~~l--~~  163 (713)
                      ..-.+.|...|....  ....+.....++        +--.+++..+=+.++|..++....+-|.+     +.++.  -+
T Consensus       614 st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~P  693 (1227)
T COG5038         614 STGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKP  693 (1227)
T ss_pred             ccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcceEEEEeccce
Confidence            334667777777763  222111111111        12356777888889999999999999887     22222  11


Q ss_pred             ccc-----c---ccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE--EEEeec
Q 005132          164 VDL-----R---KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDA  233 (713)
Q Consensus       164 ~~l-----~---~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~--~~tt~i  233 (713)
                      .++     .   ....+|+++|+|..|.+|......+.                      +|||++|.++..  +||-..
T Consensus       694 i~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~----------------------~dPya~v~~n~~~k~rti~~  751 (1227)
T COG5038         694 IYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK----------------------SDPYATVLVNNLVKYRTIYG  751 (1227)
T ss_pred             eeccccccceeeecCccceEEEEeehhhcccccccCcc----------------------cccceEEEecceeEEEEecc
Confidence            222     1   12235999999999999985444332                      499999999754  444446


Q ss_pred             CCCCCCcccceEEEEEecCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCe--e
Q 005132          234 RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDE--V  311 (713)
Q Consensus       234 ~~~~nP~WnEtf~~~v~~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  311 (713)
                      ..|.||+|||..|..+.+..+++.++++|++.. +.|..+|++.+.+.++...       ++++....   .+.|.+  .
T Consensus       752 ~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~lg~~~i~vsn~~~k-------~~~s~~~~---~i~g~~~t~  820 (1227)
T COG5038         752 SSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNLGEVNINVSNVSKK-------DEDSALME---TIDGAEETG  820 (1227)
T ss_pred             cCccccceeeeEEEEecCCccEEeeeeecchhc-cccceeceeeeeeeeeeec-------CCCcceEE---eecCccccc
Confidence            799999999999999999999999999999973 5666999999999998751       11111000   001110  0


Q ss_pred             eeeeccCCcceeeEEEEEEEeeec----c-----------------------CCCCCCCCCCcCCCCcccc-----c---
Q 005132          312 EMTVPFEGVNSGELTVRLVLKEWQ----F-----------------------SDGSHSLNNFHSGSQQSLS-----G---  356 (713)
Q Consensus       312 ~~~~~~~~~~~G~l~~~l~l~~~~----~-----------------------~~~~~~~~~~~~~~~~~~~-----~---  356 (713)
                      .+..+ ..+.+|.+++.+-+.+..    .                       .+.....-+..........     .   
T Consensus       821 ~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~  899 (1227)
T COG5038         821 KLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYS  899 (1227)
T ss_pred             ccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhh
Confidence            11111 112346666554222210    0                       0000000000000000000     0   


Q ss_pred             -CC-----CcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC--eEEeccCC-CCCCCccceEEEEEEeC-CCce
Q 005132          357 -SS-----NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIG-GGEC  426 (713)
Q Consensus       357 -~p-----~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~--~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~  426 (713)
                       .|     ......+|.+.++|..++-..       +.-|+.+.+++  ...-+... .+..+.|.+.-.+.+.+ .-..
T Consensus       900 ~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~  972 (1227)
T COG5038         900 LKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSE  972 (1227)
T ss_pred             cchhhhhhhhhcccCCceEEEEEEeecCC-------cceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccce
Confidence             00     011123468899998887442       33577777754  33333333 55566666555555443 3566


Q ss_pred             EEEEEEEecCCCCceeEEEEEeccccccCC-eeeeeeeceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEE
Q 005132          427 LMVKCYNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVE  505 (713)
Q Consensus       427 l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~  505 (713)
                      ..|.|.+.....|+.++..+++-.++..+. ....|+.+.+.  ..+.+++.|.|+  +...+....-...|.|.|.+..
T Consensus       973 ~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~--~~~~v~~~~tPv--~~~l~~~emv~nsG~l~I~~~~ 1048 (1227)
T COG5038         973 TTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGS--AKVLVQVSYTPV--PVKLPPVEMVENSGYLTIMLRS 1048 (1227)
T ss_pred             EEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCC--ceEEEEEEEeec--ccccCcceeecccCcEEEEEec
Confidence            778887753336889999999877776543 56678888764  789999999988  2233334445667999999999


Q ss_pred             ccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          506 ARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       506 a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      |.||++.|.+|.+||||++.++++ .++|+++++|+||+|||.+..++.   .+.+.+.|+|||.-.+++.||.+.++|.
T Consensus      1049 ~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~ 1128 (1227)
T COG5038        1049 GENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLS 1128 (1227)
T ss_pred             cCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHh
Confidence            999999999999999999999887 789999999999999999999985   6789999999999999999999999999


Q ss_pred             ecCCCCceeeEEEcCCCC----CcEEEEEEEE
Q 005132          582 RLPPNQMADKWIPLQGVR----KGEIHVLITR  609 (713)
Q Consensus       582 ~l~~~~~~~~w~~L~~~~----~G~i~~~l~~  609 (713)
                      .+..+.+...-.+|.+..    .|.++..+.+
T Consensus      1129 ~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038        1129 KLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred             hcCcCCccceeeeccCcceEecccEeecceec
Confidence            999998888889998755    4666666665

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.89  E-value=4.7e-23  Score=223.21  Aligned_cols=231  Identities=22%  Similarity=0.310  Sum_probs=197.7

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  444 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~  444 (713)
                      .|.|+|.+|+||++.+..|..||||.|.++. .+++|.++ +++.|.|.|.|.|.++..-..|.|.|||.|..+|+.||.
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK   85 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK   85 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence            5899999999999999999999999999975 58999999 999999999999999888999999999999449999999


Q ss_pred             EEEeccccccCCeeeeeeeceecc-----cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCC
Q 005132          445 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD  519 (713)
Q Consensus       445 ~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~D  519 (713)
                      +.|.=++|...+..+.|+.|..+.     +|+|++++.+.+..            ....+++++++++++.+.+ ++.+|
T Consensus        86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~------------~~~~~~c~~L~~r~~~P~~-~~~~d  152 (800)
T KOG2059|consen   86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI------------QSSGLVCHVLKTRQGLPII-NGQCD  152 (800)
T ss_pred             eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc------------CCCcchhhhhhhcccCcee-CCCCC
Confidence            999999998877888999998754     79999999887433            2344667778888887775 45599


Q ss_pred             cEEEEEECCe----EEEEEeeeCCCCCeeeeEEEEecC------------------CCeEEEEEEE-CCCCCCCCeeEEE
Q 005132          520 PYVKVQYGDL----KKRTKVIFKTLNPQWHQTLEFPDD------------------GSPLTLHVRD-HNALLASSSIGDC  576 (713)
Q Consensus       520 Pyv~v~~~~~----~~kT~v~~~t~nP~wne~~~f~v~------------------~~~l~i~V~D-~d~~~~d~~iG~~  576 (713)
                      ||+++...+.    ..+|++.++|.+|.|||.|+|.+.                  .-.|.+++|| .+.+..+.|+|++
T Consensus       153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGev  232 (800)
T KOG2059|consen  153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEV  232 (800)
T ss_pred             cceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeE
Confidence            9999999664    359999999999999999999972                  1358889998 6667779999999


Q ss_pred             EEEceecCCCCceeeEEEcCC----------CCCcEEEEEEEEE
Q 005132          577 VVEYQRLPPNQMADKWIPLQG----------VRKGEIHVLITRK  610 (713)
Q Consensus       577 ~i~L~~l~~~~~~~~w~~L~~----------~~~G~i~~~l~~~  610 (713)
                      .+++..+........||-|+.          ..-|.+++.++|.
T Consensus       233 rv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  233 RVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             EeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence            999998876667889999963          2238999999983

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=1.6e-21  Score=176.52  Aligned_cols=113  Identities=19%  Similarity=0.377  Sum_probs=102.2

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~  572 (713)
                      .|.|+|+|++|++++..+ .|.+||||++.+++++++|+++.+ ++||+|||+|.|++.  ...|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            378999999999988776 789999999999999999999876 899999999999984  4689999999999999999


Q ss_pred             eEEEEEEce-ecCCCCceeeEEEcCC----CCCcEEEEEEEE
Q 005132          573 IGDCVVEYQ-RLPPNQMADKWIPLQG----VRKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~~~l~~  609 (713)
                      ||++.|++. .+..++....|++|.+    ...|+|+++++|
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999996 5778888999999976    456999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.86  E-value=4.8e-21  Score=170.50  Aligned_cols=109  Identities=19%  Similarity=0.310  Sum_probs=97.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC----eEEEEEeeeCCCCCeee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~wn  545 (713)
                      |+|++++.|.              +..+.|+|+|++|+||+   ..|.+||||++++..    .+++|+++++|+||+||
T Consensus         1 ~~l~fsL~Y~--------------~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn   63 (118)
T cd08677           1 PKLHYSLSYD--------------KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE   63 (118)
T ss_pred             CeEEEEEEEc--------------CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence            5789999998              78899999999999998   346699999999964    47799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      |+|.|.+.     +.+|.|+|||+|+++++++||++.++++++..+.....|..|
T Consensus        64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999984     678999999999999999999999999998777777889765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.85  E-value=1.5e-20  Score=172.42  Aligned_cols=114  Identities=29%  Similarity=0.434  Sum_probs=103.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      +|+|++++.|.              +..+.|.|+|++|+||++.+.. |.+||||++++.+     .+++|+++++|+||
T Consensus         1 ~G~i~~sl~y~--------------~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd08393           1 QGSVQFALDYD--------------PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP   66 (125)
T ss_pred             CcEEEEEEEEE--------------CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence            49999999998              6678999999999999999875 8999999999953     35799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      +|||+|.|++.     ...|.++|||++.++++++||++.++|.++..+.....||+|+
T Consensus        67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          67 VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             ccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            99999999984     5789999999999999999999999999998888889999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.84  E-value=3.1e-20  Score=170.20  Aligned_cols=114  Identities=21%  Similarity=0.345  Sum_probs=103.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccccc-CCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      +|+|++++.|.              +..+.|.|+|++|+||++.+. .|.+||||++++.+     .++||+++++++||
T Consensus         1 ~G~i~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd04029           1 SGEILFSLSYD--------------YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP   66 (125)
T ss_pred             CcEEEEEEEEE--------------CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence            59999999998              677999999999999998865 58999999999952     36799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      +|||+|.|++.     ...|.|+|||++.++++++||++.++|..+........||+|+
T Consensus        67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          67 VYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             cccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            99999999984     5679999999999999999999999999999988999999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=1.9e-20  Score=172.26  Aligned_cols=110  Identities=29%  Similarity=0.469  Sum_probs=99.4

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--------CCeEEEEEEECCCCCCC
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--------GSPLTLHVRDHNALLAS  570 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--------~~~l~i~V~D~d~~~~d  570 (713)
                      ++|+|++|+||+..+..|.+||||++.+++.+++|+++++|+||+|||+|.|.+.        ...|.++|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            5799999999999999999999999999999999999999999999999999873        45799999999999999


Q ss_pred             CeeEEEEEEceecC--CCCceeeEEEcCC------CCCcEEEEEEE
Q 005132          571 SSIGDCVVEYQRLP--PNQMADKWIPLQG------VRKGEIHVLIT  608 (713)
Q Consensus       571 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~------~~~G~i~~~l~  608 (713)
                      ++||++.++|+++.  .+....+||+|.+      ..+|+|+++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  5667899999974      24599999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.84  E-value=2.6e-20  Score=169.90  Aligned_cols=111  Identities=30%  Similarity=0.530  Sum_probs=101.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|++++.|.                .+.|+|+|++|+||++.+ .+.+||||++++.+     .+++|+++++++||+
T Consensus         1 ~G~l~~~l~y~----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~   63 (122)
T cd08381           1 GGQVKLSISYK----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT   63 (122)
T ss_pred             CCeEEEEEEEe----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence            38999999986                388999999999999999 89999999999963     478999999999999


Q ss_pred             eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          544 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |||+|.|++      ....|.|+|||+|.++++++||++.++|.++..+.....||+|.
T Consensus        64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  122 (122)
T cd08381          64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG  122 (122)
T ss_pred             cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence            999999986      36789999999999999999999999999999888889999983

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=1.2e-19  Score=168.65  Aligned_cols=120  Identities=30%  Similarity=0.475  Sum_probs=109.2

Q ss_pred             CCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 005132          490 QNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA  566 (713)
Q Consensus       490 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~  566 (713)
                      +......|.|+|+|++|++|++.+..|.+||||++++++..++|+++++|+||.|||+|.|.+.   ...|.|+|||+|.
T Consensus         8 ~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~   87 (136)
T cd08375           8 SQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF   87 (136)
T ss_pred             ccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence            3455778999999999999999999999999999999999999999999999999999999974   5689999999999


Q ss_pred             CCCCCeeEEEEEEceecCC-----CCceeeEEEcCCCCCcEEEEEEEE
Q 005132          567 LLASSSIGDCVVEYQRLPP-----NQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      +++|++||++.+++.++..     ..+..+|..|.+..+|+|++++++
T Consensus        88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            9999999999999998864     456778999999999999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.82  E-value=1.5e-19  Score=166.00  Aligned_cols=114  Identities=25%  Similarity=0.388  Sum_probs=102.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      .|+|.+++.|.              +..+.|.|+|++|+||++.+.. |.+||||++++.+     .++||+++++++||
T Consensus         1 ~G~i~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP   66 (128)
T cd08392           1 TGEIEFALHYN--------------FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP   66 (128)
T ss_pred             CcEEEEEEEEe--------------CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence            49999999998              6779999999999999999875 9999999999953     36799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCC---CCceeeEEEcC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP---NQMADKWIPLQ  596 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~---~~~~~~w~~L~  596 (713)
                      +|||+|.|++.     ...|.+.|||++.++++++||++.|+|.++..   ......||+|.
T Consensus        67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999984     46899999999999999999999999999854   34688999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.82  E-value=1.7e-19  Score=168.20  Aligned_cols=119  Identities=28%  Similarity=0.396  Sum_probs=104.3

Q ss_pred             ceecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEECC-----eEEEEEeee
Q 005132          464 LEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIF  537 (713)
Q Consensus       464 L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~  537 (713)
                      +.....|+|.+++.|.                .+.|.|+|++|+||++.+ ..|.+||||++++..     .++||++++
T Consensus        12 ~~~~~~G~l~lsl~y~----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k   75 (146)
T cd04028          12 LASPSMGDIQLGLYDK----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR   75 (146)
T ss_pred             ccCCCcceEEEEEEeC----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC
Confidence            3344579999999884                378999999999999874 578999999999954     377999999


Q ss_pred             CCCCCeeeeEEEEec--CCCeEEEEEE-ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          538 KTLNPQWHQTLEFPD--DGSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       538 ~t~nP~wne~~~f~v--~~~~l~i~V~-D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      +|+||+|||+|.|++  .+..|.|+|| |++.++++++||++.|+|++++.+.....||+|...
T Consensus        76 ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          76 KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            999999999999998  4789999999 688889999999999999999888888999999753

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=2.9e-19  Score=163.11  Aligned_cols=112  Identities=32%  Similarity=0.551  Sum_probs=103.3

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      +|+|+|++|++|+..+..|.+||||++.+++ ..++|+++++|+||+|||+|.|.+.  ...|.|+|||+|.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            5899999999999999999999999999987 5789999999999999999999974  678999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCC----CCcEEEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGV----RKGEIHVLITR  609 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~----~~G~i~~~l~~  609 (713)
                      ++.++++++..+.....|++|.+.    ..|+|++.++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~  119 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL  119 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence            999999999988889999999743    35999999998

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.81  E-value=2.9e-19  Score=163.85  Aligned_cols=114  Identities=27%  Similarity=0.467  Sum_probs=105.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  545 (713)
                      .|+|++++.|.              +..+.|.|+|++|+||++.+..|.+||||++++.   ...++|+++++++||+||
T Consensus         2 ~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   67 (124)
T cd08387           2 RGELHFSLEYD--------------KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD   67 (124)
T ss_pred             CCEEEEEEEEC--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence            59999999998              6679999999999999999999999999999994   246899999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|.+.     ...|.++|||++.+++|++||++.++|+++..+.....||+|+
T Consensus        68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99999984     4689999999999999999999999999998888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=1.9e-19  Score=164.00  Aligned_cols=108  Identities=27%  Similarity=0.425  Sum_probs=97.7

Q ss_pred             eEEEEEEEccC---ccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC----
Q 005132          498 WIELVIVEARD---LVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL----  568 (713)
Q Consensus       498 ~L~v~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~----  568 (713)
                      .|+|+|++|++   |.++|..|++||||++.+++++.+|+++++++||+|||+|.|++.  ...|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            37899999999   889999999999999999999999999999999999999999983  568999999999874    


Q ss_pred             --CCCeeEEEEEEceecCCCCceeeEEEcCC------CCCcEEEE
Q 005132          569 --ASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHV  605 (713)
Q Consensus       569 --~d~~iG~~~i~L~~l~~~~~~~~w~~L~~------~~~G~i~~  605 (713)
                        +|++||++.++|+.+..+.....||+|..      ...|+|++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence              89999999999999998888999999973      34577764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.81  E-value=2.1e-19  Score=162.61  Aligned_cols=112  Identities=23%  Similarity=0.438  Sum_probs=100.7

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l  442 (713)
                      |.|.|+|++|++++..+ .|.+||||++.+++++++|+++ + +.||+|||+|.|.+......|.|+|||++.+ +|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            68999999999988766 7999999999999999999998 5 7999999999999877677899999999998 79999


Q ss_pred             EEEEEecc-ccccCCeeeeeeecee----cccceEEEEEEE
Q 005132          443 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA  478 (713)
Q Consensus       443 G~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~I~l~l~~  478 (713)
                      |.+.+++. .+..+...+.|++|.+    ...|+|+|+++|
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            99999996 5777777899999987    346999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=3.8e-19  Score=161.07  Aligned_cols=111  Identities=32%  Similarity=0.512  Sum_probs=103.6

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      .++|+|++|++|++.+..+.+||||++++++.+.+|+++++|+||.|||+|.|.+.   ...|.|+|||++.+++|++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            37899999999999998899999999999999999999999999999999999973   578999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ++.++|+++..+.....|++|.+. +|+|++.++|
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~  114 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTL  114 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEe
Confidence            999999999988889999999864 6999999887

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=3e-19  Score=164.42  Aligned_cols=112  Identities=27%  Similarity=0.398  Sum_probs=101.4

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCC-CC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALL-AS  570 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~-~d  570 (713)
                      .|+|+|++|++|++.+..|.+||||++++++++++|+++++++||+|||+|.|.+.      ...|.|+|||++.++ +|
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            48999999999999998899999999999999999999999999999999999984      257999999999887 89


Q ss_pred             CeeEEEEEEceecC-CCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          571 SSIGDCVVEYQRLP-PNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       571 ~~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      ++||++.++++++. .+....+||+|+..     .+|+|++++.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999987 56778999999743     57999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=5.5e-19  Score=160.77  Aligned_cols=110  Identities=26%  Similarity=0.396  Sum_probs=102.0

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~  572 (713)
                      |+|+|++|++|+..+..+.+||||++++++   .+++|+++++|+||+|||+|.|.+.   ...|.|+|||+|.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999963   5789999999999999999999984   45799999999998 8999


Q ss_pred             eEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          573 IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ||++.++++++..+.....|++|....+|+|+++|.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            9999999999999999999999999889999999987

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.80  E-value=1.1e-18  Score=160.54  Aligned_cols=114  Identities=30%  Similarity=0.314  Sum_probs=101.7

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC---eEEEEEeeeCCCCCee
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w  544 (713)
                      .|+|.+++.|.              +....|+|+|++|+||+..+.. +.+||||++++.+   +++||+++++|+||+|
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w   67 (128)
T cd08388           2 LGTLFFSLRYN--------------SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY   67 (128)
T ss_pred             CeEEEEEEEEE--------------CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence            59999999998              6779999999999999998875 8999999999953   4679999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcC
Q 005132          545 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQ  596 (713)
Q Consensus       545 ne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~  596 (713)
                      ||+|.|. ++     ...|.++|||+|.+++|++||++.++|+++...  .+...|++|+
T Consensus        68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999994 42     457999999999999999999999999999654  6789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.80  E-value=1.1e-18  Score=160.04  Aligned_cols=114  Identities=32%  Similarity=0.459  Sum_probs=104.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeee
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn  545 (713)
                      .|+|.+++.|.              ...+.|+|+|++|+||++.+..+.+||||++++.+   .+++|+++++++||+||
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn   67 (124)
T cd08385           2 LGKLQFSLDYD--------------FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN   67 (124)
T ss_pred             ccEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence            59999999998              67799999999999999999889999999999953   46799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|.+.     ...|.|+|||+|.++++++||++.++|+++..+...++|++|.
T Consensus        68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999974     4689999999999999999999999999998888899999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.80  E-value=4.4e-19  Score=161.17  Aligned_cols=112  Identities=27%  Similarity=0.415  Sum_probs=100.5

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~  572 (713)
                      |.|+|+|++|++|+..+..+.+||||++++++.+++|+++.+ ++||+|||.|.|.+.   ...|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            679999999999999999999999999999999999999764 799999999999984   467999999999876 899


Q ss_pred             eEEEEEEceecCCCCceeeEEEcCC--CCCcEEEEEEEE
Q 005132          573 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~i~~~l~~  609 (713)
                      ||++.+++.++..+....+|++|.+  ...|+|+++++|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999999877767899999975  356999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.79  E-value=1e-18  Score=161.88  Aligned_cols=114  Identities=26%  Similarity=0.396  Sum_probs=97.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccccc--CCCCCcEEEEEECC-----eEEEEEeeeCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKTLN  541 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t~n  541 (713)
                      .|+|.+++.|.              +..+.|.|.|++|+||+..+.  .+.+||||+|++..     .++||+++++|+|
T Consensus         1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n   66 (138)
T cd08407           1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN   66 (138)
T ss_pred             CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence            49999999998              778999999999999999883  35599999999965     2569999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132          542 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  596 (713)
Q Consensus       542 P~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~  596 (713)
                      |+|||+|.|.++     ...|.|+|||+|.++++++||++.+++..-            .++.+..+|+.|+
T Consensus        67 PvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~  138 (138)
T cd08407          67 PVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH  138 (138)
T ss_pred             CccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence            999999999984     578999999999999999999999998642            2345667777763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.79  E-value=1.3e-18  Score=158.42  Aligned_cols=111  Identities=26%  Similarity=0.366  Sum_probs=99.3

Q ss_pred             EEEEEEEccCccccc-cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          499 IELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       499 L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |+|.|++|+||++.+ ..|.+||||+|.+++. ..+|+++++|+||+|||+|.|.+.  ...|.+.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999874 4678999999999875 679999999999999999999995  478999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      ++.++++++..+.....||+|+..     ..|+|++++.+
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            999999999888888999999742     37999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=1.2e-18  Score=159.39  Aligned_cols=113  Identities=21%  Similarity=0.327  Sum_probs=103.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeee
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn  545 (713)
                      .|+|.+++.|.              +..+.|.|+|++|+||++.+..|.+||||++.+.+   ++++|+++++ +||+||
T Consensus         2 ~G~l~~sl~Y~--------------~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn   66 (124)
T cd08389           2 CGDLDVAFEYD--------------PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN   66 (124)
T ss_pred             CEEEEEEEEEC--------------CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence            59999999998              77799999999999999999999999999988843   5789999888 999999


Q ss_pred             eEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|+ +.     ...|.++|||++.++++++||++.|+|+++..+.....|++|+
T Consensus        67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            999998 53     6789999999999999999999999999999888999999997

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.79  E-value=1.6e-18  Score=159.19  Aligned_cols=114  Identities=29%  Similarity=0.457  Sum_probs=104.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  545 (713)
                      .|+|++++.|.              +..+.|+|+|++|+||+..+..+.+||||++++.   ..+.+|+++++|+||+||
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn   67 (125)
T cd08386           2 LGRIQFSVSYD--------------FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN   67 (125)
T ss_pred             ccEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence            49999999997              6778999999999999999988999999999993   357899999999999999


Q ss_pred             eEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|.+      ....|.++|||++.++++++||++.+++.++..+.....|++|+
T Consensus        68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            9999974      24679999999999999999999999999999888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.79  E-value=9e-19  Score=159.49  Aligned_cols=111  Identities=19%  Similarity=0.323  Sum_probs=99.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCee
Q 005132          471 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       471 ~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~w  544 (713)
                      +|.+++.|.              +..+.|.|+|++|+||++.+..+.+||||++++.+      .+++|+++++++||+|
T Consensus         2 ~i~~sL~Y~--------------~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvf   67 (124)
T cd08680           2 QVQIGLRYD--------------SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVF   67 (124)
T ss_pred             eEEEEEEEC--------------CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCcc
Confidence            588888887              77899999999999999998889999999999942      3689999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEc
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPL  595 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L  595 (713)
                      ||+|.|++.     ...|.++|||++.++++++||++.|+|++++.. .....||+|
T Consensus        68 nE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          68 NEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             ccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999984     679999999999999999999999999999655 458899986

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.79  E-value=1.6e-18  Score=161.24  Aligned_cols=115  Identities=28%  Similarity=0.438  Sum_probs=100.3

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC------------CCeEEEEEEEC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------------GSPLTLHVRDH  564 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------------~~~l~i~V~D~  564 (713)
                      ++|+|+|++|++|+..|..|.+||||+|++++.+++|+++++|+||.|||+|.|.+.            ...|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            478999999999999999999999999999999999999999999999999999741            25699999999


Q ss_pred             CCCCCCCeeEEEEE-EceecC---CCCceeeEEEcCC--CCCcEEEEEEEEEec
Q 005132          565 NALLASSSIGDCVV-EYQRLP---PNQMADKWIPLQG--VRKGEIHVLITRKVP  612 (713)
Q Consensus       565 d~~~~d~~iG~~~i-~L~~l~---~~~~~~~w~~L~~--~~~G~i~~~l~~~~p  612 (713)
                      |..++|++||++.+ ++..+.   ...+..+|++|..  ...|+|++++++ ++
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~-~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFEL-IE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEE-EE
Confidence            99999999999997 555443   3467889999973  457999999998 54

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.3e-18  Score=158.68  Aligned_cols=112  Identities=32%  Similarity=0.626  Sum_probs=102.4

Q ss_pred             ceEEEEEEEccCcccccc------CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 005132          497 GWIELVIVEARDLVAADL------RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL  567 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~  567 (713)
                      |.|+|+|++|+||+..+.      .|.+||||++++++..++|+++++|.||+|||+|.|.+.   ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998874      368999999999999999999999999999999999874   67899999999988


Q ss_pred             CCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          568 LASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                       +|++||++.++++++..+....+||+|.+...|+|++++++
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             89999999999999987777899999998889999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.3e-18  Score=164.19  Aligned_cols=112  Identities=24%  Similarity=0.445  Sum_probs=100.3

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCee
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSI  573 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~i  573 (713)
                      .|+|+|++|++|++.+..|.+||||++.+++++++|+++.+ |+||+|||+|.|.+.   ...|.|+|+|++..++|++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999999999999877 699999999999984   46899999999999899999


Q ss_pred             EEEEEEceecCC----CCceeeEEEcCCC-----------CCcEEEEEEEE
Q 005132          574 GDCVVEYQRLPP----NQMADKWIPLQGV-----------RKGEIHVLITR  609 (713)
Q Consensus       574 G~~~i~L~~l~~----~~~~~~w~~L~~~-----------~~G~i~~~l~~  609 (713)
                      |++.++|+++..    +....+||+|.+.           .+|+|++.++|
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~  131 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCL  131 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEe
Confidence            999999999864    3457999999753           24999999999

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.79  E-value=2.2e-18  Score=158.66  Aligned_cols=114  Identities=23%  Similarity=0.433  Sum_probs=104.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.              +..+.|+|+|++|+||+..+..+.+||||++++.     ..+++|++++++.||+
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~   67 (127)
T cd04030           2 LGRIQLTIRYS--------------SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV   67 (127)
T ss_pred             CeEEEEEEEEe--------------CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence            59999999998              6679999999999999999988999999999995     3578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCC--CCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNAL--LASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~--~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+.     ...|.+.|||++.+  ++|++||++.++|.++..+.....||+|.
T Consensus        68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9999999984     46899999999986  78999999999999998888889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.6e-18  Score=159.24  Aligned_cols=113  Identities=31%  Similarity=0.482  Sum_probs=100.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.              +..+.|+|+|++|++|+..+..+.+||||++++.+     .+++|+++++|+||+
T Consensus         2 ~G~l~~~l~~~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   67 (125)
T cd04031           2 TGRIQIQLWYD--------------KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE   67 (125)
T ss_pred             cEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence            49999999998              67799999999999999999889999999999964     577999999999999


Q ss_pred             eeeEEEEec-C-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          544 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v-~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+ .     ...|.|+|||++.++++++||++.++|++.. ......||+|+
T Consensus        68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             cccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            999999985 2     4689999999999999999999999999843 23457999985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.78  E-value=1.5e-18  Score=160.77  Aligned_cols=98  Identities=26%  Similarity=0.368  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|.++++|.              +....|.|+|++|+||+..+..|.+||||++++.+     .++||+++++|+||+|
T Consensus         2 G~i~~sL~Y~--------------~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~   67 (136)
T cd08406           2 GEILLSLSYL--------------PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF   67 (136)
T ss_pred             cEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCee
Confidence            8999999998              67789999999999999999899999999999943     2668999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      ||+|.|.++     ...|.|+|||+|.++++++||++.|+..
T Consensus        68 nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~  109 (136)
T cd08406          68 NEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA  109 (136)
T ss_pred             ceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence            999999984     6789999999999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=1.6e-18  Score=159.86  Aligned_cols=113  Identities=33%  Similarity=0.559  Sum_probs=102.1

Q ss_pred             ceEEEEEEEccCcccccc--CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132          497 GWIELVIVEARDLVAADL--RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~  571 (713)
                      |.|+|.|++|++|+..+.  .+.+||||++.+++.+++|+++++|+||.|||+|.|++.   ...|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            679999999999999888  889999999999999999999999999999999999984   688999999999999999


Q ss_pred             eeEEEEEEceecC---CCCceeeEEEcCCC-------CCcEEEEEEEE
Q 005132          572 SIGDCVVEYQRLP---PNQMADKWIPLQGV-------RKGEIHVLITR  609 (713)
Q Consensus       572 ~iG~~~i~L~~l~---~~~~~~~w~~L~~~-------~~G~i~~~l~~  609 (713)
                      +||++.+++.++.   ......+||+|.+.       ..|+|++++++
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999986   33457899999864       47999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=2.4e-18  Score=157.45  Aligned_cols=112  Identities=29%  Similarity=0.457  Sum_probs=101.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      |+|.++++|.              ...+.|.|+|++|+||+..+ ..+.+||||++++.+     .+++|+++++++||+
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (123)
T cd08521           1 GEIEFSLSYN--------------YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV   66 (123)
T ss_pred             CeEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence            8999999997              67799999999999999988 788999999999842     467999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      |||+|.|.+.     ...|.|+|||++.++++++||++.++|+++..+.....||+|
T Consensus        67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            9999999974     468999999999999999999999999999877788999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.78  E-value=1.6e-18  Score=157.31  Aligned_cols=109  Identities=25%  Similarity=0.433  Sum_probs=96.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|++++.|.                .+.|.|+|++|+||++.+ .|.+||||++++.+     .++||+++++|+||+|
T Consensus         1 G~l~l~~~~~----------------~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~   63 (119)
T cd08685           1 GQLKLSIEGQ----------------NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF   63 (119)
T ss_pred             CEEEEEEEEc----------------CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence            7888888774                478999999999999998 88999999999964     3679999999999999


Q ss_pred             eeEEEEecC----CCeEEEEEEECCCCC-CCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          545 HQTLEFPDD----GSPLTLHVRDHNALL-ASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       545 ne~~~f~v~----~~~l~i~V~D~d~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      ||+|.|++.    ...|.++|||++..+ ++++||++.|+|.++..+.....||.|
T Consensus        64 nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          64 HETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             ccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            999999984    356899999999876 478999999999999878788999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=1.8e-18  Score=156.22  Aligned_cols=99  Identities=23%  Similarity=0.331  Sum_probs=88.2

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEEC-----C--eEEEEEeeeCCCCCeeeeEEEEecCC------CeEEEEEEEC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYG-----D--LKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDH  564 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~D~  564 (713)
                      .|+|+|++|++|+..+ .|.+||||+|++.     .  ++++|+++.+|+||+|||+|.|.+..      ..|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999887 4899999999983     2  35689999999999999999999842      3599999999


Q ss_pred             CCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      |..++|++||++.++|.++..++....|++|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            988889999999999999999888999999964

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.77  E-value=5.6e-18  Score=155.76  Aligned_cols=109  Identities=25%  Similarity=0.367  Sum_probs=99.1

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC--eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |.|+|++|+||+.  ..|.+||||+++++.  .+++|+++++|+||+|||.|.|.+.  ...|.|+|||++..++|++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999988  678999999999974  5789999999999999999999984  578999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR  609 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~  609 (713)
                      ++.+++.++..+.....|++|++.      ..|+|.+++.|
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~  119 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLF  119 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEE
Confidence            999999999887778899999743      47999999999

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.77  E-value=1.2e-18  Score=160.70  Aligned_cols=92  Identities=28%  Similarity=0.605  Sum_probs=86.7

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~  572 (713)
                      ..|.|+|+|.+|.||..+|..++|||||.+.+++++.+|+++++++||+|||.|+|.+.  ...|.++|||+|.+++||+
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~   83 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF   83 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence            45899999999999999999899999999999999999999999999999999999984  7889999999999999999


Q ss_pred             eEEEEEEceecCCC
Q 005132          573 IGDCVVEYQRLPPN  586 (713)
Q Consensus       573 iG~~~i~L~~l~~~  586 (713)
                      ||.++|+|..+...
T Consensus        84 mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   84 MGEATIPLKPLLEA   97 (168)
T ss_pred             cceeeeccHHHHHH
Confidence            99999999988654

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.76  E-value=1.3e-17  Score=152.72  Aligned_cols=113  Identities=24%  Similarity=0.317  Sum_probs=102.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEEC---CeEEEEEeeeCCCCCeee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  545 (713)
                      |+|.+++.|.              +..+.|.|+|++|+||+..+ ..+.+||||++++.   ...++|+++++++||+||
T Consensus         1 G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn   66 (123)
T cd08390           1 GRLWFSVQYD--------------LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD   66 (123)
T ss_pred             CEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence            8999999998              67789999999999999998 68899999999984   346799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|.+.     ...|.|+|||++..+++++||++.++|+++........|++|.
T Consensus        67 e~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          67 ETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             eEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99999984     3689999999999999999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.76  E-value=5.9e-18  Score=184.00  Aligned_cols=238  Identities=18%  Similarity=0.262  Sum_probs=179.2

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC--cEEEEeecCCCCCCcccceEEEEEe
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLH  250 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g--~~~~tt~i~~~~nP~WnEtf~~~v~  250 (713)
                      --|+|+|.+|+||+..+..|++                      ||||.|.+.  ++.||.++.+++.|.|.|.|+|.+.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP   62 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP   62 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence            3589999999999998887765                      999999995  6789999999999999999999998


Q ss_pred             cCCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccCCcceeeEEEEEE
Q 005132          251 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLV  330 (713)
Q Consensus       251 ~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~l~  330 (713)
                      -.-.-|.|.|||.|  ..+||.||.+.|.=.+|...+.           .+.|+.+..      +..+....|++++++-
T Consensus        63 ~~F~~l~fYv~D~d--~~~D~~IGKvai~re~l~~~~~-----------~d~W~~L~~------VD~dsEVQG~v~l~l~  123 (800)
T KOG2059|consen   63 RTFRYLSFYVWDRD--LKRDDIIGKVAIKREDLHMYPG-----------KDTWFSLQP------VDPDSEVQGKVHLELA  123 (800)
T ss_pred             cceeeEEEEEeccc--cccccccceeeeeHHHHhhCCC-----------Cccceeccc------cCCChhhceeEEEEEE
Confidence            77899999999999  4799999999998888875321           223322210      0111223588887775


Q ss_pred             EeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC----eEEeccCC-
Q 005132          331 LKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA-  405 (713)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~----~~~kT~~~-  405 (713)
                      +.+...+                            .-+...+.+++++-+.. ++.+||||++...+    +..+|+++ 
T Consensus       124 ~~e~~~~----------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k  174 (800)
T KOG2059|consen  124 LTEAIQS----------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK  174 (800)
T ss_pred             eccccCC----------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceee
Confidence            4321110                            12333344555665544 45599999999843    34699999 


Q ss_pred             CCCCCccceEEEEEEeCC----------------CceEEEEEEEe-cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          406 HSPNHVWNQKFELDEIGG----------------GECLMVKCYNE-EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       406 ~t~nP~wne~f~f~v~~~----------------~~~l~i~V~d~-~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      ++.+|.|+|.|.|.+..+                ...|++.+|++ +.. .+.++|++.+++...........||.|...
T Consensus       175 kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~  254 (800)
T KOG2059|consen  175 KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR  254 (800)
T ss_pred             eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC
Confidence            999999999999997544                34789999984 444 799999999999998877778899999753


Q ss_pred             c----------cceEEEEEEEEe
Q 005132          468 N----------TGELRLQIEATR  480 (713)
Q Consensus       468 ~----------~G~I~l~l~~~~  480 (713)
                      .          -|.+++.+.|..
T Consensus       255 ~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  255 PNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             CCcccCCCCCCccceeeeEEeee
Confidence            2          378999998863

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.76  E-value=7.8e-18  Score=154.13  Aligned_cols=110  Identities=30%  Similarity=0.518  Sum_probs=98.9

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      .|+|+|++|++|+..+..+.+||||++++++.+.+|+++++|+||.|||+|.|.+.   ...|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            48999999999999998889999999999999999999999999999999999984   467999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCC---------CCCcEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQG---------VRKGEIHVLI  607 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~---------~~~G~i~~~l  607 (713)
                      ++.++|+++..+.....||.|..         ...|.|.+.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            99999999977777889999963         2348888765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.76  E-value=6.5e-18  Score=161.65  Aligned_cols=127  Identities=25%  Similarity=0.398  Sum_probs=107.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.+.......  .......+.|+|+|++|+||+..+..+.+||||++++.     ..+++|+++++|+||+
T Consensus         1 ~G~l~~~l~y~~~~~~~~~--~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~   78 (162)
T cd04020           1 RGELKVALKYVPPESEGAL--KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV   78 (162)
T ss_pred             CceEEEEEEecCccccccc--cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence            4999999999965432211  12335779999999999999999989999999999983     3578999999999999


Q ss_pred             eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          544 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       544 wne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      |||+|.|.+      ....|.|+|||++.+++|++||++.+++.++........|+.+.+
T Consensus        79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999999984      245799999999999999999999999999987777889998864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=1.4e-17  Score=152.92  Aligned_cols=109  Identities=24%  Similarity=0.434  Sum_probs=95.9

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-C--CeEEEEEEECCCCCCCCe
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-G--SPLTLHVRDHNALLASSS  572 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~--~~l~i~V~D~d~~~~d~~  572 (713)
                      ..|+|+|++|+||+..   +.+||||+|.+++. ..+|++ ++++||.|||+|.|.+. .  ..++|.|||++.+++|++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            4699999999999875   47899999999875 468887 56899999999999863 2  579999999999999999


Q ss_pred             eEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEE
Q 005132          573 IGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~  609 (713)
                      ||++.++|+.+..+.....||+|.+.      ..|+|+++++|
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~  122 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY  122 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence            99999999999888888999999643      34999999999

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.76  E-value=8e-18  Score=156.30  Aligned_cols=112  Identities=30%  Similarity=0.443  Sum_probs=99.0

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL  568 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~  568 (713)
                      .|+|+|++|++|+..+..|.+||||++++.+.       +++|+++++|+||.|||+|.|.+.  ...|.++|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            37999999999999998899999999999764       579999999999999999999984  567999999999999


Q ss_pred             CCCeeEEEEEEceecCCCC------ceeeEEEcCC-----CCCcEEEEEEEE
Q 005132          569 ASSSIGDCVVEYQRLPPNQ------MADKWIPLQG-----VRKGEIHVLITR  609 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~~------~~~~w~~L~~-----~~~G~i~~~l~~  609 (713)
                      +|++||++.+++.++..+.      ...+||+|++     ...|+|+++++|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            9999999999999987543      3569999974     347999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=8.5e-18  Score=153.13  Aligned_cols=106  Identities=31%  Similarity=0.572  Sum_probs=94.4

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEE
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGD  575 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~  575 (713)
                      |+|+|++|+||+..    .+||||++.+++.+.+|+++++|+||+|||+|.|.+.   ...|.++|||+|.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    7899999999999999999999999999999999984   57899999999987 7899999


Q ss_pred             EEEEceecCCCC-----ceeeEEEcCCCC----CcEEEEEEEE
Q 005132          576 CVVEYQRLPPNQ-----MADKWIPLQGVR----KGEIHVLITR  609 (713)
Q Consensus       576 ~~i~L~~l~~~~-----~~~~w~~L~~~~----~G~i~~~l~~  609 (713)
                      +.++|+++..+.     ...+||+|.+..    +|+|++++.|
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            999999986432     357999997543    5999999977

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=1.6e-17  Score=151.12  Aligned_cols=111  Identities=27%  Similarity=0.541  Sum_probs=100.6

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |.|+|+|++|++|+..+..+.+||||++++++...+|+++++|.||.|||+|.|++.  ...+.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            679999999999999998899999999999999999999999999999999999984  678999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      ++.+++.++..+.  .+|++|...     ..|+|++++++
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999987553  689999642     47999999986

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.75  E-value=6.1e-18  Score=155.50  Aligned_cols=110  Identities=28%  Similarity=0.510  Sum_probs=97.7

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC------CCceEEEEEEEecCC-CC
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD  439 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~------~~~~l~i~V~d~~~~-~d  439 (713)
                      ++|+|++|+||+.++..|.+||||+++++++.++|+++ ++.||+|||+|.|.+..      ....|.|+|||++.+ +|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            47999999999999889999999999999999999999 99999999999999876      367899999999987 79


Q ss_pred             ceeEEEEEeccccc--cCCeeeeeeeceec------ccceEEEEEE
Q 005132          440 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE  477 (713)
Q Consensus       440 ~~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~I~l~l~  477 (713)
                      ++||++.+++.++.  .+.....||+|.+.      ..|+|+++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  55567899999752      3589988863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.3e-17  Score=151.89  Aligned_cols=101  Identities=27%  Similarity=0.396  Sum_probs=94.0

Q ss_pred             EEEEEEEEeEc---CCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-----
Q 005132          367 KINVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----  437 (713)
Q Consensus       367 ~L~V~I~~a~~---L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-----  437 (713)
                      .|.|+|++|++   |..++..|.+||||+++++++.+||+++ ++.||+|||+|.|.+.++...|.|+|||++..     
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   8888999999999999999999999999 99999999999999987777999999999875     


Q ss_pred             --CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          438 --GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       438 --~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                        +|++||++.+++..+..+.....||+|...
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~  112 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL  112 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEeC
Confidence              899999999999999988888999999853

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.75  E-value=8.4e-18  Score=157.78  Aligned_cols=98  Identities=27%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC------------------C
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD------------------G  554 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~------------------~  554 (713)
                      .|+|+|++|+||++  .+|.+||||+|++.+     .+++|+++++|+||+|||+|.|.+.                  .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999998  578999999999976     5789999999999999999999983                  2


Q ss_pred             CeEEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEcCC
Q 005132          555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG  597 (713)
Q Consensus       555 ~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~  597 (713)
                      ..|.|+|||++.+++|++||++.|+|..+..+ .....||+|..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            46999999999999999999999999999876 67799999963

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=2e-17  Score=150.84  Aligned_cols=110  Identities=30%  Similarity=0.503  Sum_probs=97.7

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEE
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGD  575 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~  575 (713)
                      |.|+|++|++|++.+..|.+||||++.+++. ..+|+++++|+||+|||.|.|.+.  ...|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            7899999999999999999999999999876 469999999999999999999985  4789999999999999999999


Q ss_pred             EEEEceecCCC-CceeeEEEcCCC-----CCcEEEEEEE
Q 005132          576 CVVEYQRLPPN-QMADKWIPLQGV-----RKGEIHVLIT  608 (713)
Q Consensus       576 ~~i~L~~l~~~-~~~~~w~~L~~~-----~~G~i~~~l~  608 (713)
                      +.++++.+... .....|++|.+.     ..|+|+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999888643 347899999753     3799998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.74  E-value=3e-17  Score=156.44  Aligned_cols=113  Identities=26%  Similarity=0.451  Sum_probs=99.6

Q ss_pred             CceEEEEEEEccCccccc------------------------------cCCCCCcEEEEEECCeE-EEEEeeeCCCCCee
Q 005132          496 NGWIELVIVEARDLVAAD------------------------------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQW  544 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~w  544 (713)
                      -|.|.|+|++|++|+++|                              ..|++||||+|++++.+ .+|++++++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            388999999999999877                              35778999999999865 69999999999999


Q ss_pred             eeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC------CCCcEEEEEEEE
Q 005132          545 HQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHVLITR  609 (713)
Q Consensus       545 ne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~------~~~G~i~~~l~~  609 (713)
                      ||+|.|.+.  ...|.|+|||+|.++ +++||++.++++++..+.....|++|.+      ...|+|+++++|
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            999999973  568999999999875 5799999999999988888999999964      235899999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.74  E-value=2.3e-17  Score=153.82  Aligned_cols=101  Identities=29%  Similarity=0.468  Sum_probs=91.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.              +..+.|+|.|++|++|+..+..|.+||||+|++.+     .+++|+++++++||.
T Consensus         1 ~G~l~~~l~y~--------------~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   66 (136)
T cd08402           1 LGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY   66 (136)
T ss_pred             CcEEEEEeEEc--------------CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence            38999999998              77899999999999999999999999999999942     357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  583 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l  583 (713)
                      |||+|.|++.     ...|.|+|||++.+++|++||++.+++...
T Consensus        67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          67 YNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             ccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence            9999999984     347999999999999999999999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.74  E-value=1.7e-17  Score=150.64  Aligned_cols=113  Identities=22%  Similarity=0.407  Sum_probs=101.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC-CceEEEEEEEecCCCCcee
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  442 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~l  442 (713)
                      |.|.|+|++|++|+..+..+.+||||++.+++..++|+++ + +.||.|||.|.|.+..+ ...|.|+|||++..+|++|
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i   80 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI   80 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence            5899999999999999988999999999999999999988 4 78999999999998774 6789999999987778999


Q ss_pred             EEEEEeccccccCCeeeeeeeceec--ccceEEEEEEE
Q 005132          443 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA  478 (713)
Q Consensus       443 G~~~i~l~~l~~~~~~~~w~~L~~~--~~G~I~l~l~~  478 (713)
                      |++.+++.++..+.....|++|...  ..|+|+++++|
T Consensus        81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999998877677899999864  46999999875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=3.6e-17  Score=149.30  Aligned_cols=114  Identities=32%  Similarity=0.529  Sum_probs=103.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      .|.|+|++|++|+..+..|.+||||++++++ ..++|+++ ++.||.|||+|.|.+......|.|+|||++.. +|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3889999999999999889999999999976 68999999 99999999999999877678999999999998 899999


Q ss_pred             EEEEeccccccCCeeeeeeeceecc----cceEEEEEEEEe
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATR  480 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~~----~G~I~l~l~~~~  480 (713)
                      .+.+++.++..+...+.|++|.+..    .|+|++.+.+.|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            9999999999888888999997543    699999998863

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=4.6e-17  Score=147.41  Aligned_cols=112  Identities=27%  Similarity=0.505  Sum_probs=103.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      +++|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            378999999999999888999999999999999999999 999999999999998775 78999999999987 899999


Q ss_pred             EEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      .+.+++.++..+.....|++|++. .|+|++.+.|.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            999999999988888999999975 69999998774

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.73  E-value=2.9e-17  Score=149.80  Aligned_cols=113  Identities=30%  Similarity=0.552  Sum_probs=102.6

Q ss_pred             cEEEEEEEEeEcCCCCCC------CCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~------~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~  437 (713)
                      |.|.|+|++|++|+..+.      .|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999987764      3689999999999999999999 99999999999999875 478999999999877


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceecccceEEEEEEE
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  478 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~  478 (713)
                      ++++||.+.+++.++..+...+.||+|.+..+|+|+++++|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            88999999999999988777889999998888999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=3.9e-17  Score=152.07  Aligned_cols=100  Identities=18%  Similarity=0.271  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCe
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~  543 (713)
                      |+|.+++.|.              +..+.|.|+|++|+||+..+..|.+||||++++.+      .++||+++++++||+
T Consensus         2 ~ei~~sL~Y~--------------~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv   67 (138)
T cd08408           2 PELLLGLEYN--------------ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE   67 (138)
T ss_pred             CeEEEEeEEc--------------CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence            7899999987              77899999999999999999999999999999953      256999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  583 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l  583 (713)
                      |||+|.|++.     ...|.|+|||++.++++++||++.+++...
T Consensus        68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence            9999999984     568999999999999999999999988743

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.73  E-value=3.5e-17  Score=149.41  Aligned_cols=112  Identities=24%  Similarity=0.377  Sum_probs=94.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCC-CCe
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTL-NPQ  543 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~-nP~  543 (713)
                      .+|.++++|.              +..+.|+|.|++|+||++.+..+.+||||+|++..     .++||+++++|+ ||+
T Consensus         1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~   66 (135)
T cd08692           1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK   66 (135)
T ss_pred             CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence            3789999998              78899999999999999886677789999999842     478999999996 699


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecC-------------CCCceeeEEEc
Q 005132          544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP-------------PNQMADKWIPL  595 (713)
Q Consensus       544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~-------------~~~~~~~w~~L  595 (713)
                      |||+|.|++.    ...|.++|||++..+++++||++.++.+...             ++.+..+|+.|
T Consensus        67 fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          67 WGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             ecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence            9999999984    4578999999999999999999999986431             34566777765

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.73  E-value=3.5e-17  Score=152.18  Aligned_cols=99  Identities=27%  Similarity=0.449  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|.++++|.              +..+.|+|+|++|++|+..+..|.+||||++++.+     .+++|+++++|+||+|
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w   66 (135)
T cd08410           1 GELLLSLNYL--------------PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY   66 (135)
T ss_pred             CcEEEEEEEC--------------CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence            8999999998              67799999999999999999899999999999832     3579999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcee
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR  582 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~  582 (713)
                      ||+|.|.+.     ...|.|+|||+|..+++++||++.|....
T Consensus        67 nE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          67 NESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             ceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCcc
Confidence            999999983     34699999999999999999999876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.73  E-value=5.9e-17  Score=150.23  Aligned_cols=112  Identities=28%  Similarity=0.480  Sum_probs=101.3

Q ss_pred             CceEEEEEEEccCcccccc----------CCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEec-CCCeEEEEEEE
Q 005132          496 NGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPD-DGSPLTLHVRD  563 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v-~~~~l~i~V~D  563 (713)
                      .|.|+|+|++|++|...+.          .|.+||||++.+++++ .+|+++++|+||.|||+|.|.+ ....|.|.|||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d   82 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH   82 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence            4789999999999998875          3689999999999865 6999999999999999999999 46789999999


Q ss_pred             CCCCCCCCeeEEEEEEceecCC--CCceeeEEEcCCCCCcEEEEEEEE
Q 005132          564 HNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ++.++++++||++.++|+++..  +.....|++|.  +.|+|++.+++
T Consensus        83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~  128 (132)
T cd04014          83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIEL  128 (132)
T ss_pred             CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEE
Confidence            9999999999999999999876  56789999998  67999999998

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.72  E-value=8.3e-17  Score=149.53  Aligned_cols=114  Identities=23%  Similarity=0.474  Sum_probs=102.8

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCce
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  441 (713)
                      .|.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.. +|++
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~   93 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF   93 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence            37999999999999999889999999999999999999999 999999999999998764 67899999999987 7899


Q ss_pred             eEEEEEecccccc-----CCeeeeeeeceecccceEEEEEEE
Q 005132          442 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA  478 (713)
Q Consensus       442 lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~  478 (713)
                      ||.+.+++.++..     ......|..+.+...|+|++++.+
T Consensus        94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          94 LGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             eEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            9999999999886     334567888888888999999875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=6.2e-17  Score=148.30  Aligned_cols=115  Identities=31%  Similarity=0.407  Sum_probs=99.6

Q ss_pred             ceEEEEEEEccCccccc-cCCCCCcEEEEEECC--eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 005132          497 GWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~  571 (713)
                      |.|+|+|++|++|+..+ ..+.+||||++.+++  ..++|+++.++.||.|||.|.|.+.  ...|.|+|||++..++|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            78999999999999655 457799999999988  7899999999999999999999974  678999999999999999


Q ss_pred             eeEEEEEEceecCCCCcee-eEEEc--CCCCCcEEEEEEEEEec
Q 005132          572 SIGDCVVEYQRLPPNQMAD-KWIPL--QGVRKGEIHVLITRKVP  612 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~~~~~-~w~~L--~~~~~G~i~~~l~~~~p  612 (713)
                      +||++.++|.++....... .|+.+  .++..|+|+++++| .|
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~-~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRF-FP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEe-CC
Confidence            9999999999997665554 44544  35678999999998 54

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.72  E-value=5.9e-17  Score=151.02  Aligned_cols=101  Identities=35%  Similarity=0.477  Sum_probs=91.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC--C---eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~  543 (713)
                      .|+|.++++|.              +..+.|.|+|++|+||+..+..|.+||||++++.  +   .+++|+++++++||+
T Consensus         1 ~G~l~~sl~y~--------------~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (136)
T cd08405           1 RGELLLSLCYN--------------PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV   66 (136)
T ss_pred             CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence            49999999998              6779999999999999999889999999999983  2   357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  583 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l  583 (713)
                      |||+|.|.+.     ...|.|+|||++.+++|++||++.+++...
T Consensus        67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            9999999974     467999999999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=3.4e-17  Score=145.47  Aligned_cols=98  Identities=23%  Similarity=0.398  Sum_probs=88.8

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      .|.|+|++|++|+..+..+.+||||++++++++++|+++++|.||+|||+|.|.+.   ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            47899999999999998999999999999999999999999999999999999985   4679999999986   78999


Q ss_pred             EEEEEceecCCC--CceeeEEEcCCC
Q 005132          575 DCVVEYQRLPPN--QMADKWIPLQGV  598 (713)
Q Consensus       575 ~~~i~L~~l~~~--~~~~~w~~L~~~  598 (713)
                      ++.++|.++...  ....+||+|.+.
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            999999998644  368999999853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.72  E-value=3.3e-17  Score=153.99  Aligned_cols=105  Identities=23%  Similarity=0.434  Sum_probs=92.4

Q ss_pred             eEEEEEEEccCccccccC--------------CCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----CCeEEE
Q 005132          498 WIELVIVEARDLVAADLR--------------GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTL  559 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~--------------g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i  559 (713)
                      .|.|+|++|++|+++|..              +.+||||+|.+++++.+|+++++++||+|||+|.|++.    ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            378999999999998854              37899999999999999999999999999999999862    468999


Q ss_pred             EEEECCCCCCCCeeEEEEEEceecCCCCc-------eeeEEEcCCCCCcE
Q 005132          560 HVRDHNALLASSSIGDCVVEYQRLPPNQM-------ADKWIPLQGVRKGE  602 (713)
Q Consensus       560 ~V~D~d~~~~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~  602 (713)
                      +|||+|..++|++||++.+++.++.....       ...|+.|.+.++|.
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            99999999999999999999998865432       36899999887775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.72  E-value=2.2e-17  Score=153.94  Aligned_cols=112  Identities=28%  Similarity=0.394  Sum_probs=97.7

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|.++++|.              +..+.|.|+|++|+||+..+..|.+||||++++.+     .+++|+++++|+||.
T Consensus         1 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~   66 (136)
T cd08404           1 RGELLLSLCYQ--------------PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV   66 (136)
T ss_pred             CCeEEEEEEEe--------------CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence            49999999997              56789999999999999999999999999999943     257899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+.     ...|.|+|||+|.++++++||++.+++..  .+.....|++|.
T Consensus        67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            9999999984     45789999999999999999999999987  344566777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.72  E-value=3e-17  Score=147.06  Aligned_cols=99  Identities=30%  Similarity=0.583  Sum_probs=89.9

Q ss_pred             EEEEEEEccCcccccc-CCCCCcEEEEEECCeEEEEEeeeCCCCCee-eeEEEEecC-----CCeEEEEEEECCCCCCCC
Q 005132          499 IELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQW-HQTLEFPDD-----GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~w-ne~~~f~v~-----~~~l~i~V~D~d~~~~d~  571 (713)
                      |.|+|++|++|+..+. .|.+||||++++++.+++|+++++++||.| ||+|.|.+.     ...|.|+|||++.+++|+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 789999999999999999999999999999 999999985     368999999999999999


Q ss_pred             eeEEEEEEceecCC---CCceeeEEEcCC
Q 005132          572 SIGDCVVEYQRLPP---NQMADKWIPLQG  597 (713)
Q Consensus       572 ~iG~~~i~L~~l~~---~~~~~~w~~L~~  597 (713)
                      +||++.+++.++..   +.....||+|..
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999965   456899999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.71  E-value=9.2e-17  Score=149.34  Aligned_cols=98  Identities=37%  Similarity=0.488  Sum_probs=89.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++..     .+++|+++++++||.|
T Consensus         1 g~l~~~~~y~--------------~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w   66 (134)
T cd08403           1 GELMFSLCYL--------------PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY   66 (134)
T ss_pred             CeEEEEEEEc--------------CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence            8899999998              67899999999999999999999999999999842     3679999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      ||+|.|.+.     ...|.|+|||++.++++++||++.+++.
T Consensus        67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            999999874     3469999999999999999999999977

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.71  E-value=7.6e-17  Score=149.32  Aligned_cols=118  Identities=31%  Similarity=0.484  Sum_probs=105.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      +|+|+|++.|.                .+.|+|+|++|++|+..+..+.+||||+|.+.+     ..++|++++++.||.
T Consensus         1 ~g~~~~~~~~~----------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~   64 (131)
T cd04026           1 RGRIYLKISVK----------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV   64 (131)
T ss_pred             CcEEEEEEEEC----------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC
Confidence            48999999887                288999999999999988888999999999963     578999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEE
Q 005132          544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI  603 (713)
Q Consensus       544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  603 (713)
                      |||+|.|.+.    ...|.++|||++..+++++||++.++|+++... ....||+|.+...|+.
T Consensus        65 wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          65 WNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             ccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            9999999984    357999999999999999999999999999754 7789999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.71  E-value=1.3e-16  Score=146.89  Aligned_cols=109  Identities=28%  Similarity=0.453  Sum_probs=98.0

Q ss_pred             EEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEE
Q 005132          503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCV  577 (713)
Q Consensus       503 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~  577 (713)
                      |++|++|+.  ..|.+||||++++++.+++|++++++.||+|||+|.|++.     ...|.|+|||++..++|++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            688999998  6789999999999999999999999999999999999983     578999999999999999999999


Q ss_pred             EEceecCCCCceeeEEEcCCC----CCcEEEEEEEEEecCC
Q 005132          578 VEYQRLPPNQMADKWIPLQGV----RKGEIHVLITRKVPEL  614 (713)
Q Consensus       578 i~L~~l~~~~~~~~w~~L~~~----~~G~i~~~l~~~~p~~  614 (713)
                      ++++++..+.....|++|...    .+|+|+++++| .|..
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~-~~~~  119 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSY-QPPD  119 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEE-eCCC
Confidence            999999988889999999632    35999999999 5543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.71  E-value=9.9e-17  Score=145.90  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=100.8

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCcee
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  442 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~l  442 (713)
                      |.|+|++|++|+..+..+.+||||+++++   ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            78999999999988888999999999995   467899999 999999999999998764 5679999999988788999


Q ss_pred             EEEEEeccccccCCeeeeeeeceecccceEEEEEEE
Q 005132          443 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  478 (713)
Q Consensus       443 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~  478 (713)
                      |++.+++.++..+.....|++|...+.|++++++..
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999998888999999999889999998865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.71  E-value=3.3e-17  Score=152.64  Aligned_cols=100  Identities=21%  Similarity=0.332  Sum_probs=89.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|.+++.|.              +..+.|.|+|++|+||++.+ .+.+||||++++.+     .+++|+++++++||+|
T Consensus         2 G~i~~sl~y~--------------~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f   66 (137)
T cd08409           2 GDIQISLTYN--------------PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF   66 (137)
T ss_pred             cEEEEEEEEC--------------CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence            8999999998              67799999999999999988 78899999999854     3679999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP  584 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~  584 (713)
                      ||+|.|.++     ...|.|+|||++..+++++||++.++.....
T Consensus        67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence            999999984     4689999999999999999999999865443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=9e-17  Score=148.14  Aligned_cols=113  Identities=31%  Similarity=0.517  Sum_probs=101.4

Q ss_pred             cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC-CCc
Q 005132          366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~  440 (713)
                      |.|.|+|++|++|+..+.  .+.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++.. +++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            589999999999998887  8899999999999999999999 99999999999999887 478999999999988 899


Q ss_pred             eeEEEEEecccccc---CCeeeeeeeceec-------ccceEEEEEEE
Q 005132          441 NMGSARVNLEGLVE---GSVRDIWVPLEKV-------NTGELRLQIEA  478 (713)
Q Consensus       441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~I~l~l~~  478 (713)
                      +||.+.+++.++..   ......||+|.+.       .+|+|++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            99999999999873   3346789999865       37999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=9e-17  Score=147.94  Aligned_cols=113  Identities=34%  Similarity=0.484  Sum_probs=100.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEecCC--CC
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GD  439 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~--~d  439 (713)
                      .|.|+|++|++|+..+..|.+||||+++++++.++|+++ ++.||.|||.|.|.+..+    ...|.|+|||++..  ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            389999999999998888999999999999999999999 999999999999998753    35899999998876  68


Q ss_pred             ceeEEEEEeccccc-cCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132          440 ENMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT  479 (713)
Q Consensus       440 ~~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~I~l~l~~~  479 (713)
                      ++||++.++++++. .+.....||+|+..     .+|+|.|++.+.
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            99999999999998 45667899999874     379999998764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.71  E-value=3.1e-17  Score=151.46  Aligned_cols=90  Identities=17%  Similarity=0.381  Sum_probs=83.2

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE-EEEeecCCCCCCcccceEEEEEec
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHE  251 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~-~~tt~i~~~~nP~WnEtf~~~v~~  251 (713)
                      |.|+|+|++|.+|..+|+.+++                      ||||.+++|.+ .+|+++++++||+|||+|.|.+.+
T Consensus         6 GLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d   63 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD   63 (168)
T ss_pred             eEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC
Confidence            9999999999999999987765                      99999999865 466678999999999999999999


Q ss_pred             CCceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132          252 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  285 (713)
Q Consensus       252 ~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~  285 (713)
                      .+..|++.|||+|. +.+||++|.|+|+|+.+..
T Consensus        64 ~~~~lkv~VyD~D~-fs~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   64 PNTPLKVTVYDKDT-FSSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             CCceEEEEEEeCCC-CCcccccceeeeccHHHHH
Confidence            99999999999999 5899999999999999885

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.71  E-value=2e-16  Score=145.32  Aligned_cols=111  Identities=24%  Similarity=0.354  Sum_probs=97.7

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI  573 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~i  573 (713)
                      ...++|+|++|++|...+..|.+||||++.+++++++|+++++|.||+|||.|.|.+.  ...|.|+|||++.. +|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            5789999999999999998999999999999999999999999999999999999863  56899999999987 48999


Q ss_pred             EEEEEEceecCCCCceeeEEEcC-------CCCCcEEEEEEEE
Q 005132          574 GDCVVEYQRLPPNQMADKWIPLQ-------GVRKGEIHVLITR  609 (713)
Q Consensus       574 G~~~i~L~~l~~~~~~~~w~~L~-------~~~~G~i~~~l~~  609 (713)
                      |++.+++..+.  ....+|++|.       +...|+|.+++++
T Consensus        81 G~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~  121 (126)
T cd04046          81 GQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS  121 (126)
T ss_pred             EEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence            99999998754  3456888884       3456999999987

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=1.2e-16  Score=150.88  Aligned_cols=113  Identities=27%  Similarity=0.436  Sum_probs=99.9

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCcee
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~l  442 (713)
                      .|.|+|++|++|+..+..|.+||||+++++++.++|+++ + +.||+|||.|+|.+.++ ...+.|+|+|++.. +|++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            389999999999999999999999999999999999999 6 69999999999998765 56999999999887 89999


Q ss_pred             EEEEEeccccccC----Ceeeeeeeceecc-----------cceEEEEEEEE
Q 005132          443 GSARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT  479 (713)
Q Consensus       443 G~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~I~l~l~~~  479 (713)
                      |.+.++|.++..+    .....||+|.+..           .|+|+|++.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            9999999998743    3468999998643           38999999886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.70  E-value=1.4e-16  Score=147.84  Aligned_cols=110  Identities=22%  Similarity=0.327  Sum_probs=95.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeee
Q 005132          471 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWH  545 (713)
Q Consensus       471 ~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wn  545 (713)
                      +|.+++.|.              +..+.|.|+|++|++|++.+..|.+||||++++.+     .+.+|+++++|+||+||
T Consensus         1 ~i~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn   66 (133)
T cd08384           1 KILVSLMYN--------------TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN   66 (133)
T ss_pred             CEEEEEEEc--------------CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence            478888887              67799999999999999999889999999999953     36799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          546 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       546 e~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |+|.|.+.     ...|.|+|||+|..++|++||++.+++..  .++...+|+++.
T Consensus        67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l  120 (133)
T cd08384          67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCL  120 (133)
T ss_pred             cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHH
Confidence            99999984     46899999999999999999999999985  334456777664

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.70  E-value=1.2e-16  Score=146.23  Aligned_cols=110  Identities=22%  Similarity=0.365  Sum_probs=94.9

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEEC-CeEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--CCee
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYG-DLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--SSSI  573 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~--d~~i  573 (713)
                      .|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|++. ...|.++|||++.+++  |++|
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceE
Confidence            378999999999999988999999999996 57889999999999999999999984 6789999999999875  5899


Q ss_pred             EEEEEEceecCCCC-ceeeEEEcCCC-------CCcEEEEEE
Q 005132          574 GDCVVEYQRLPPNQ-MADKWIPLQGV-------RKGEIHVLI  607 (713)
Q Consensus       574 G~~~i~L~~l~~~~-~~~~w~~L~~~-------~~G~i~~~l  607 (713)
                      |++.+++.++.... ....|++|...       ..|+|.+++
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999986443 45789999532       258888775

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.70  E-value=2.2e-16  Score=145.11  Aligned_cols=110  Identities=23%  Similarity=0.373  Sum_probs=97.5

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~  571 (713)
                      .|+|+|++|++|+..+..+.+||||++.+.+   ...+|+++++++||.|||+|.|.+.   ...|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5889999999999999999999999999864   3679999999999999999999985   368999999999998999


Q ss_pred             eeEEEEEEceecCC---CCceeeEEEcCCCCCcEEEEEEEE
Q 005132          572 SIGDCVVEYQRLPP---NQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       572 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      +||++.++|+.+..   +.....|++|.+  .|+|++.+++
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~  120 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM  120 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence            99999999987532   446789999974  7999999988

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.70  E-value=1.6e-16  Score=144.69  Aligned_cols=110  Identities=23%  Similarity=0.407  Sum_probs=97.7

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          368 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       368 L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|+|.+|+||+..+ ..|.+||||+|.++++ .++|+++ ++.||.|||+|.|.+......|.|.|||++.+ +|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999998864 4578999999999765 7899999 99999999999999887678999999999988 899999


Q ss_pred             EEEEeccccccCCeeeeeeeceecc-----cceEEEEEE
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE  477 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~  477 (713)
                      .+.++++++..+...+.||+|+...     .|+|++++.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            9999999998877788999998632     699999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.70  E-value=1.8e-16  Score=142.28  Aligned_cols=99  Identities=27%  Similarity=0.371  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCCC
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNAL  567 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~~  567 (713)
                      ..+.|+|+|++|++|+    .|.+||||++++++++++|+++++++||.|||+|.|.+.       ...|.|+|||++.+
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            4578999999999998    578999999999999999999999999999999999963       36799999999999


Q ss_pred             CCCCeeEEEEEEceecCCC---CceeeEEEcCC
Q 005132          568 LASSSIGDCVVEYQRLPPN---QMADKWIPLQG  597 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~~~---~~~~~w~~L~~  597 (713)
                      ++|++||++.++|+++..+   .....|++|.+
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            9999999999999999544   45789999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=1e-16  Score=148.74  Aligned_cols=102  Identities=28%  Similarity=0.422  Sum_probs=92.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-------CeEEEEEeeeCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-------DLKKRTKVIFKTLN  541 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~v~~~t~n  541 (713)
                      .|+|.++++|.              .....|+|+|++|++|+..+..|.+||||+|++.       ..+++|+++++|+|
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~n   67 (133)
T cd04009           2 YGVLTVKAYYR--------------ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF   67 (133)
T ss_pred             ceEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCC
Confidence            59999999997              5678999999999999999888999999999995       24789999999999


Q ss_pred             CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132          542 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLP  584 (713)
Q Consensus       542 P~wne~~~f~v~-------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~  584 (713)
                      |+|||+|.|++.       ...|.|+|||++.+++|++||++.++|+++.
T Consensus        68 P~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          68 PLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            999999999973       3589999999999999999999999999885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.70  E-value=1e-16  Score=142.68  Aligned_cols=90  Identities=22%  Similarity=0.252  Sum_probs=80.6

Q ss_pred             ceEEEEEEEccCcccccc----CCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCCC
Q 005132          497 GWIELVIVEARDLVAADL----RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNALL  568 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~----~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~D~d~~~  568 (713)
                      |.|.|+|++|++|++.+.    .+.+||||++++++.++||+++++|+||+|||+|.|.+.    ...|.|+|||+|.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            679999999999998763    235899999999999999999999999999999999973    347999999999999


Q ss_pred             CCCeeEEEEEEceecCCC
Q 005132          569 ASSSIGDCVVEYQRLPPN  586 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~  586 (713)
                      +|++||++.++|+++..+
T Consensus        81 ~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          81 FNDYVATGSLSVQELLNA   98 (108)
T ss_pred             CCcceEEEEEEHHHHHhh
Confidence            999999999999998644

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.7e-16  Score=144.72  Aligned_cols=108  Identities=35%  Similarity=0.570  Sum_probs=94.5

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC--------
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL--------  567 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~--------  567 (713)
                      .|+|+|++|++|+..+..|.+||||++++++..++|+++++|+||.|||+|.|.+.  ...|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            68999999999999998899999999999999999999999999999999999873  56899999999853        


Q ss_pred             ---CCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEE
Q 005132          568 ---LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLI  607 (713)
Q Consensus       568 ---~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l  607 (713)
                         +.+++||++.+++.++..  ...+||+|..     ..+|+|++++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence               468999999999998753  3579999974     2368988764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.69  E-value=2.8e-16  Score=143.32  Aligned_cols=98  Identities=23%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+..+ .+.+||||++++.     ..++||+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            48999999999999999 8999999999994     347899999 99999999999998722    3679999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                      .+ ++++||++.++|.++..+.....||+|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            88 799999999999999887778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.69  E-value=8.1e-17  Score=144.53  Aligned_cols=97  Identities=29%  Similarity=0.497  Sum_probs=86.7

Q ss_pred             ceEEEEEEEccCccccccC-CCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 005132          497 GWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA  566 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~  566 (713)
                      |.|+|+|++|++|+..+.. +.+||||+|++.+   ..++|+++++|+||+|||+|.|.+.      ...|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 8999999999943   4689999999999999999999863      3689999999999


Q ss_pred             CCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          567 LLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      +++|++||++.+++.++.   ....|++++
T Consensus        81 ~~~dd~lG~~~i~l~~l~---~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI---EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence            999999999999999997   346888875

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=4.4e-16  Score=146.36  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             EEEEEEccC--ccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCCeeeeEEEEecCC-----------CeEEEEE
Q 005132          500 ELVIVEARD--LVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDG-----------SPLTLHV  561 (713)
Q Consensus       500 ~v~v~~a~~--L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~v~~-----------~~l~i~V  561 (713)
                      .++|..|++  |++.+..+.+||||++++     ..++.||+++++|+||+|||+|.|.+..           ..|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            445555555  788888889999999997     2358899999999999999999999843           4699999


Q ss_pred             EECCCC-CCCCeeEEEEEEceecCCCCceeeEEEcC-C--CCCcEEEEEEEEEecCCcc
Q 005132          562 RDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVPELDK  616 (713)
Q Consensus       562 ~D~d~~-~~d~~iG~~~i~L~~l~~~~~~~~w~~L~-~--~~~G~i~~~l~~~~p~~~~  616 (713)
                      ||++.+ .+|++||++.++|+.+..+.....|++|. +  ..+|.|++++..+.|-...
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~  143 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPLTGK  143 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence            999987 47999999999999998887778899986 3  3469999999997765443

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=3.5e-16  Score=140.76  Aligned_cols=104  Identities=16%  Similarity=0.332  Sum_probs=87.3

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      +.|.|+|++|++|+..+   ..||||++.+++++.+|++.++ .||.|||+|.|.+.  ...|.|+|||+|.+ +|++||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            57999999999997654   4599999999999999999988 49999999999984  45699999999965 899999


Q ss_pred             EEEEEceecCCCCce--eeEEEcCC---CCCcEEEE
Q 005132          575 DCVVEYQRLPPNQMA--DKWIPLQG---VRKGEIHV  605 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~--~~w~~L~~---~~~G~i~~  605 (713)
                      ++.|+|.++..+...  .+||+|..   ...|++.-
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~  112 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVG  112 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChHHhccCCeEec
Confidence            999999999755444  89999984   23465543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=1.8e-17  Score=170.90  Aligned_cols=117  Identities=31%  Similarity=0.482  Sum_probs=105.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      +|+|++.+...                ...|.|.|.+|+||.++|.+|.|||||++.+-.     .+++|++++.|+||+
T Consensus       168 RGrl~l~~~~~----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~  231 (683)
T KOG0696|consen  168 RGRLYLEAHIK----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV  231 (683)
T ss_pred             cceEEEEEEec----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence            69999998765                578999999999999999999999999999943     478999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcE
Q 005132          544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE  602 (713)
Q Consensus       544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  602 (713)
                      |||+|.|...    ...|.|+|||||+.++++|+|...+.+++|... +...||.|-+...||
T Consensus       232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE  293 (683)
T ss_pred             ccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence            9999999973    678999999999999999999999999999754 678999998777676

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.68  E-value=2.6e-16  Score=140.13  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-cEEEEeecCCCCCCcccceEEEEEec
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLHE  251 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~~~~tt~i~~~~nP~WnEtf~~~v~~  251 (713)
                      |+|+|+|++|++|+..+..+..                  +..+||||+|+++ ...||++++++.||+|||+|.|.+.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~------------------~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~   62 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRT------------------GFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP   62 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCC------------------CCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence            8999999999999987632100                  1124999999996 55677778999999999999999865


Q ss_pred             C--CceEEEEEEEeCCCCCccceeEEEEEEcccccCCc
Q 005132          252 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS  287 (713)
Q Consensus       252 ~--~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~  287 (713)
                      .  ...|.|+|||+|.. ++||+||++.++|++|..+.
T Consensus        63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhhC
Confidence            4  45899999999984 78999999999999998643

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.68  E-value=4.4e-16  Score=148.44  Aligned_cols=114  Identities=25%  Similarity=0.449  Sum_probs=100.3

Q ss_pred             cEEEEEEEEeEcCCCCC------------------------------CCCCCCcEEEEEECCe-EEeccCC-CCCCCccc
Q 005132          366 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWN  413 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~------------------------------~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wn  413 (713)
                      |.|.|+|++|++|+.+|                              ..|.+||||+|.+++. ..+|+++ ++.||.||
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn   86 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN   86 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence            79999999999999876                              3467899999999864 5799999 99999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeeceec------ccceEEEEEEEE
Q 005132          414 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEAT  479 (713)
Q Consensus       414 e~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~  479 (713)
                      |+|.|.+......|.|.|||++..++++||.+.++++++..+...+.|++|.+.      ..|+|+++++|.
T Consensus        87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            999999877777899999999888789999999999999988888899999752      257999999873

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.68  E-value=1.9e-16  Score=147.11  Aligned_cols=115  Identities=29%  Similarity=0.432  Sum_probs=101.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-----EEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~v~~~t~nP~w  544 (713)
                      |+|.++++|.              +..+.|.|.|++|+||+..+..+.+||||++++.+.     +++|++++++.||.|
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w   66 (134)
T cd00276           1 GELLLSLSYL--------------PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF   66 (134)
T ss_pred             CeEEEEEEee--------------CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence            8899999998              667899999999999999988889999999999642     569999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCC
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK  600 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~  600 (713)
                      ||+|.|.+.     ...|.|+|||++.++++++||++.+++++  .+...++|++|...++
T Consensus        67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~  125 (134)
T cd00276          67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR  125 (134)
T ss_pred             eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence            999999984     47899999999998999999999999998  5556788888865543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.68  E-value=4.6e-16  Score=143.00  Aligned_cols=111  Identities=17%  Similarity=0.316  Sum_probs=99.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEC--CeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|+|++|++|+.  ..|.+||||+++++  .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  67899999999997  357899999 99999999999999866678899999999988 799999


Q ss_pred             EEEEeccccccCCeeeeeeeceec------ccceEEEEEEEEe
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATR  480 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~  480 (713)
                      ++.+++.++........|++|...      ..|+|.+++.|.+
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            999999999988877889999854      4799999999974

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1e-15  Score=140.07  Aligned_cols=111  Identities=32%  Similarity=0.460  Sum_probs=97.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  544 (713)
                      |+|.+++.|.              +..+.|+|+|++|++|++.+..+.+||||++.+.+     .+.+|+++++++||.|
T Consensus         2 G~~~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~W   67 (123)
T cd04035           2 GTLEFTLLYD--------------PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF   67 (123)
T ss_pred             cEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCc
Confidence            8999999998              66789999999999999988888999999999842     4689999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          545 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       545 ne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      ||+|.|. +.     ...|.++|||++.+ ++++||++.++|+++..++....|+.|
T Consensus        68 ne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          68 NETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             cceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            9999996 32     46899999999988 899999999999999877766666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.67  E-value=5.2e-16  Score=142.32  Aligned_cols=100  Identities=22%  Similarity=0.390  Sum_probs=88.2

Q ss_pred             cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||++.+.. |.+||||++++.     ..++||+++ ++.||+|||+|.|.+..   ....|.|+|||++
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~   94 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD   94 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence            4799999999999998875 899999999992     236899999 99999999999999764   2578999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .. ++++||++.++|.++..+.....||+|+
T Consensus        95 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          95 SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            87 8899999999999998777778899874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.67  E-value=5.4e-16  Score=137.72  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=89.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEE
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA  445 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~  445 (713)
                      |.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+..+ ...|.|+|+|++.  +++||++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~   79 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL   79 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence            78999999999998888999999999999999999999 999999999999999874 6789999999886  8899999


Q ss_pred             EEeccccccCC--eeeeeeeceec
Q 005132          446 RVNLEGLVEGS--VRDIWVPLEKV  467 (713)
Q Consensus       446 ~i~l~~l~~~~--~~~~w~~L~~~  467 (713)
                      .+++.++....  ..+.||+|++.
T Consensus        80 ~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          80 TLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEHHHhhccccceeeeeEecCCC
Confidence            99999998654  57899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.67  E-value=5.4e-16  Score=141.24  Aligned_cols=108  Identities=25%  Similarity=0.408  Sum_probs=95.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCCCCceeEE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGS  444 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~lG~  444 (713)
                      .|.|+|++|+||+..    .+||||++.+++...+|+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||.
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~   76 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG   76 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence            388999999999876    68999999999999999999 99999999999999776 4788999999998878999999


Q ss_pred             EEEeccccccCC-----eeeeeeeceecc----cceEEEEEEE
Q 005132          445 ARVNLEGLVEGS-----VRDIWVPLEKVN----TGELRLQIEA  478 (713)
Q Consensus       445 ~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~I~l~l~~  478 (713)
                      +.++++++....     ....||+|....    +|+|++++.|
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            999999987532     356899998754    5999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.66  E-value=1.2e-15  Score=142.31  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEE-EecCC
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~  437 (713)
                      +.|.|+|++|+||+..+ ..|.+||||++++  ++   .++||+++ ++.||+|||+|.|.+......|.|+|| |++.+
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~  108 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRM  108 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCC
Confidence            48999999999998764 5688999999999  32   37899999 999999999999998866889999999 56666


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                       ++++||.+.|+|+++..+.....||+|...
T Consensus       109 ~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         109 DKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence             889999999999999777777899999863

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.66  E-value=1.2e-15  Score=140.02  Aligned_cols=112  Identities=26%  Similarity=0.490  Sum_probs=96.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCCCCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCcee
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~l  442 (713)
                      ..|.|+|++|+||+.+   +.+||||+|.+++. ..+|++.++.||.|||+|.|.+..+ ...+.|.|||++.. +|++|
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i   80 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI   80 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence            3799999999999874   47899999999874 5788866779999999999986554 36789999999888 89999


Q ss_pred             EEEEEeccccccCCeeeeeeeceecc------cceEEEEEEEEe
Q 005132          443 GSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR  480 (713)
Q Consensus       443 G~~~i~l~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~  480 (713)
                      |.+.+++.++..+...+.|++|.+..      .|+|++++.|.+
T Consensus        81 G~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          81 AEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999998888888999997642      499999999973

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.66  E-value=1.1e-15  Score=140.11  Aligned_cols=100  Identities=21%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             cEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~-~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+..+. .|.+||||++++.     ...+||+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~   94 (125)
T cd04029          15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD   94 (125)
T ss_pred             CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            589999999999988765 4789999999993     236899999 999999999999997652   568999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .. ++++||++.+++.++......+.|++|.
T Consensus        95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            87 8899999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.66  E-value=1.3e-15  Score=139.61  Aligned_cols=100  Identities=23%  Similarity=0.444  Sum_probs=90.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C-CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|++|+..+..|.+||||++++  + ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~   95 (124)
T cd08387          16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS   95 (124)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence            589999999999999998999999999999  3 457999999 999999999999997653   56899999999888 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      ++++||.+.++++++..+...+.||+|+
T Consensus        96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          96 RDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCceeEEEEEecccccCCCCcceEEECc
Confidence            7999999999999998777889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.65  E-value=2.4e-16  Score=177.20  Aligned_cols=358  Identities=16%  Similarity=0.150  Sum_probs=227.5

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-EEEEeecCCCCCCcccceEEEEEec
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHE  251 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-~~~tt~i~~~~nP~WnEtf~~~v~~  251 (713)
                      --+++.|..|+.|...+..+-+                      |||+.|.+-. ...|-++.+|+||.||++..|--.+
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~s----------------------dp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e  263 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDES----------------------DPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE  263 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccCC----------------------CchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence            5678889999999988866544                      9999999954 4555557899999999998875211


Q ss_pred             ----------CCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccC--C
Q 005132          252 ----------ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE--G  319 (713)
Q Consensus       252 ----------~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  319 (713)
                                .--.+.|+|||.|+. .++|++|++.....-...-+            .-+|           ++.-  +
T Consensus       264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p------------~lkw-----------~p~~rg~  319 (1105)
T KOG1326|consen  264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCP------------ALKW-----------VPTMRGA  319 (1105)
T ss_pred             ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCC------------ccce-----------EEeeccc
Confidence                      124789999999994 79999999875443222100            0112           1111  1


Q ss_pred             cceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCc--CcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC
Q 005132          320 VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNF--ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK  397 (713)
Q Consensus       320 ~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~  397 (713)
                      ...|++.++..+    +..+. +...........++.-|..  +..+.+.+.|-...-+|+...+......|-+.+.+|+
T Consensus       320 ~l~gd~l~a~el----iq~~~-~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~  394 (1105)
T KOG1326|consen  320 FLDGDVLIAAEL----IQIGK-PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG  394 (1105)
T ss_pred             ccccchhHHHHH----HhhcC-CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence            123443322100    00000 0000000111112222211  0112245555556667776666667788999999999


Q ss_pred             eEEeccCC--CCCCCccceEEEEEEeC-C-----CceEEEEEEEecCC-CCceeEEEEEe-ccccccCCe----------
Q 005132          398 IVQRTRTA--HSPNHVWNQKFELDEIG-G-----GECLMVKCYNEEIF-GDENMGSARVN-LEGLVEGSV----------  457 (713)
Q Consensus       398 ~~~kT~~~--~t~nP~wne~f~f~v~~-~-----~~~l~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~----------  457 (713)
                      +..++-.+  .-.||.|+..+.+.... +     ...+.++|.|.+.+ .....|.|.++ +..++....          
T Consensus       395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~  474 (1105)
T KOG1326|consen  395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA  474 (1105)
T ss_pred             ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence            88888777  77899999777655322 2     45889999999888 77888988875 333321110          


Q ss_pred             ------------------eeeeeecee-----------------cc-----------cceEEEEEEEEeecC--------
Q 005132          458 ------------------RDIWVPLEK-----------------VN-----------TGELRLQIEATRVDD--------  483 (713)
Q Consensus       458 ------------------~~~w~~L~~-----------------~~-----------~G~I~l~l~~~~~~~--------  483 (713)
                                        ...|++...                 ..           ++..++.+.......        
T Consensus       475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~  554 (1105)
T KOG1326|consen  475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ  554 (1105)
T ss_pred             CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence                              011111110                 00           112333333221100        


Q ss_pred             ------------C--C-----------------------CCC--------CCCCCCCCceEEEEEEEccCccccccCCCC
Q 005132          484 ------------N--E-----------------------GSR--------GQNIGSGNGWIELVIVEARDLVAADLRGTS  518 (713)
Q Consensus       484 ------------~--~-----------------------~~~--------~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~  518 (713)
                                  .  +                       ..+        -+...+....++|.+++|.+|.+.|.+|.+
T Consensus       555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a  634 (1105)
T KOG1326|consen  555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA  634 (1105)
T ss_pred             hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence                        0  0                       000        001235556788999999999999999999


Q ss_pred             CcEEEEEECCeE--EEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          519 DPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       519 DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      |||+++.+|++.  -++..+.+|+||+|++.|++...   ...+.++|||+|.+++|+.||+.+++|+
T Consensus       635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE  702 (1105)
T KOG1326|consen  635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE  702 (1105)
T ss_pred             CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence            999999999976  57788999999999999988863   6789999999999999999999999986

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.65  E-value=5.5e-16  Score=142.32  Aligned_cols=108  Identities=29%  Similarity=0.353  Sum_probs=94.3

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeee-CCCCCeeeeEEEEecC-------CCeEEEEEEECCCCC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIF-KTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL  568 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~-~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~~~  568 (713)
                      .|+|+|++|++|+..+..+.+||||+|++++ .+++|+++. ++.||.|||.|.|.+.       ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4799999999999998889999999999988 889999975 5899999999999983       368999999999989


Q ss_pred             CCCeeEEEEEEceecCCCCc-----eeeEEEcC---CCCCcEEEE
Q 005132          569 ASSSIGDCVVEYQRLPPNQM-----ADKWIPLQ---GVRKGEIHV  605 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~---~~~~G~i~~  605 (713)
                      +|++||++.++|.++..+..     ...||+|.   +..+|+|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            99999999999999865443     47999996   456788864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.65  E-value=1.7e-15  Score=138.16  Aligned_cols=110  Identities=25%  Similarity=0.480  Sum_probs=96.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeEE
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS  444 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG~  444 (713)
                      |.|+|++|++|+..+..|.+||||++++++. .++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            7899999999999999999999999999765 5799999 99999999999999876678999999999988 8999999


Q ss_pred             EEEeccccccCC-eeeeeeeceecc-----cceEEEEEE
Q 005132          445 ARVNLEGLVEGS-VRDIWVPLEKVN-----TGELRLQIE  477 (713)
Q Consensus       445 ~~i~l~~l~~~~-~~~~w~~L~~~~-----~G~I~l~l~  477 (713)
                      +.++++++.... ..+.|++|.+..     .|+|++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999999887543 367899998643     799988864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.65  E-value=2e-15  Score=139.95  Aligned_cols=111  Identities=27%  Similarity=0.551  Sum_probs=98.3

Q ss_pred             cEEEEEEEEeEcCCCCCC----------CCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEE
Q 005132          366 RKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN  433 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~----------~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d  433 (713)
                      |.|.|+|++|++|...+.          .+.+||||++.++++ ..+|+++ ++.||.|||+|+|.+. +...+.|.|||
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d   82 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH   82 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence            689999999999987775          267999999999875 4799999 9999999999999986 56789999999


Q ss_pred             ecCC-CCceeEEEEEecccccc--CCeeeeeeeceecccceEEEEEEEE
Q 005132          434 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       434 ~~~~-~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      ++.. .+++||.+.++|.++..  +...+.|++|+  +.|+|++++.|.
T Consensus        83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~  129 (132)
T cd04014          83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELK  129 (132)
T ss_pred             CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEe
Confidence            8877 78999999999999987  45678999998  469999999987

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.65  E-value=1e-15  Score=138.28  Aligned_cols=100  Identities=20%  Similarity=0.308  Sum_probs=87.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C----C--eEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEe
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNE  434 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~----~--~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~  434 (713)
                      .|.|+|++|++|+..+ .|.+||||+|++ |    .  ++++|+++ ++.||+|||+|+|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999998877 599999999998 3    2  35789999 999999999999998742    45799999999


Q ss_pred             cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      +.. ++++||++.+++.++..+.....|++|+..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            876 789999999999999988888999999763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.65  E-value=2.8e-15  Score=136.32  Aligned_cols=111  Identities=24%  Similarity=0.404  Sum_probs=98.7

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|.|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+......+.|+|||++.. ++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            5799999999999998888999999999999888999999 99999999999999876578999999999886 889999


Q ss_pred             EEEEeccccccCCeeeeeeeceec-----ccceEEEEEEE
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  478 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~  478 (713)
                      ++.+++.++..+.  ..|++|...     ..|+|.+++++
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999987553  579998653     37999998875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.65  E-value=1.4e-15  Score=141.29  Aligned_cols=112  Identities=28%  Similarity=0.364  Sum_probs=98.0

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-------EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-  437 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-------~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-  437 (713)
                      .|.|+|++|++|+..+..+.+||||++++++.       .++|+++ ++.||.|||+|.|.+......|.|+|||++.. 
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            38999999999999988899999999999543       5799999 99999999999999876677899999999988 


Q ss_pred             CCceeEEEEEeccccccCC------eeeeeeeceec-----ccceEEEEEEE
Q 005132          438 GDENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA  478 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~-----~~G~I~l~l~~  478 (713)
                      ++++||.+.+++.++....      ....||+|++.     ..|+|++++.|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            7999999999999988653      24689999863     36999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.64  E-value=1.6e-15  Score=135.17  Aligned_cols=96  Identities=15%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---C-eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K-IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~-~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+   ..|.+||||++++.   + .+++|+++ +|.||+|||+|.|.+...   ...|.|.|||+|.+
T Consensus        14 ~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf   90 (118)
T cd08677          14 AELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF   90 (118)
T ss_pred             CEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence            58999999999998   24669999999993   2 47899999 999999999999997663   67899999999999


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeec
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                       ++++||++.+++.++..+.....|..|
T Consensus        91 s~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          91 SRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCceEEEEEEccccccCCccccchhcC
Confidence             999999999999998666666678654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=2.2e-15  Score=137.01  Aligned_cols=107  Identities=29%  Similarity=0.370  Sum_probs=94.4

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI  573 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~i  573 (713)
                      |.|+|+|++|++|+..+..+.+||||++.+++ ..++|++++++.||.|||+|.|++.  ...|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999999889999999999977 4789999999999999999999874  57899999999999999999


Q ss_pred             EEEEEEceecCCCCceeeEEEcCCCCCcEEE
Q 005132          574 GDCVVEYQRLPPNQMADKWIPLQGVRKGEIH  604 (713)
Q Consensus       574 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  604 (713)
                      |++.+++.++..+ ....||.|.+...+.+.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            9999999999776 56788888765555543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.64  E-value=2.3e-15  Score=138.03  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=93.2

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeC-CCCCeeeeEEEEecC------CCeEEEEEEECCCCCC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD------GSPLTLHVRDHNALLA  569 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~~  569 (713)
                      |.|.|+|++|++|+..+..+.+||||++++++..++|++..+ +.||.|||+|.|.+.      ...|.|+|||++.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            679999999999999888899999999999999999999885 899999999999984      2579999999999999


Q ss_pred             CCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          570 SSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       570 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |++||++.+++.++..+.....|+.|+..
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999877788999999864

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.64  E-value=1.9e-15  Score=138.25  Aligned_cols=110  Identities=27%  Similarity=0.543  Sum_probs=96.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      .|+|+|++|++|...+..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            389999999999998888899999999999999999999 999999999999998765 57899999999887 789999


Q ss_pred             EEEEeccccccCCeeeeeeeceec---------ccceEEEEE
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKV---------NTGELRLQI  476 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~---------~~G~I~l~l  476 (713)
                      .+.+++.++..+.....|+.|...         ..|.|++.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999877667889998752         246666654

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.64  E-value=1.2e-15  Score=142.00  Aligned_cols=99  Identities=27%  Similarity=0.391  Sum_probs=89.9

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEEC----CeEEEEEeeeCCCCCeeeeEEEEecCC------------------Ce
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYG----DLKKRTKVIFKTLNPQWHQTLEFPDDG------------------SP  556 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~v~~~t~nP~wne~~~f~v~~------------------~~  556 (713)
                      |+|.|++|++|+.. ..|.+||||+++++    ..+++|++++++.||.|||+|.|.+..                  ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78899999999998    678999999999999999999999742                  47


Q ss_pred             EEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          557 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       557 l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |.|+|||++.++++++||++.+++.++........||+|+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999998999999999999999877788999999753

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.1e-15  Score=143.79  Aligned_cols=100  Identities=30%  Similarity=0.491  Sum_probs=89.1

Q ss_pred             CCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-----------------------------EEEEEeeeCCCC
Q 005132          491 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-----------------------------KKRTKVIFKTLN  541 (713)
Q Consensus       491 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----------------------------~~kT~v~~~t~n  541 (713)
                      ...++.+.|+|+|++|++|.+.|..|.+||||++.+.+.                             .++|+++++|+|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            456889999999999999999999999999999999631                             368999999999


Q ss_pred             CeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          542 PQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       542 P~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      |.|||+|.|.+.   ...|.|+|||++    |++||++.++++++.. .....||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999984   568999999998    8899999999999983 457999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.64  E-value=2.2e-15  Score=136.69  Aligned_cols=98  Identities=27%  Similarity=0.461  Sum_probs=86.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|+||+..+ .|.+||||++++.     ..++||+++ ++.||.|||+|.|.+...  ...|.|.|||++..
T Consensus        12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            58999999999999888 7899999999993     237799999 999999999999997653  45789999998876


Q ss_pred             --CCceeEEEEEeccccccCCeeeeeeec
Q 005132          438 --GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       438 --~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                        ++++||.+.+++.++..+.....||.|
T Consensus        91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             cCCCEEEEEEEecHHHhccCccccceEeC
Confidence              478999999999999877778899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.63  E-value=4.2e-15  Score=136.22  Aligned_cols=100  Identities=28%  Similarity=0.442  Sum_probs=89.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|+||+..+..+.+||||++++.   ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~   95 (124)
T cd08385          16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFS   95 (124)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCC
Confidence            4899999999999998888999999999983   357899999 999999999999997652   56899999999988 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      ++++||++.+++.++..+...+.|++|+
T Consensus        96 ~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          96 KHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCceeEEEEEecCcccCCCCcceEEEcc
Confidence            8899999999999998888888999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.63  E-value=3.6e-15  Score=136.98  Aligned_cols=100  Identities=22%  Similarity=0.336  Sum_probs=86.8

Q ss_pred             cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+.++.. |.+||||++++.     ...+||+++ ++.||+|||+|.|.+...   ...|.|.|||.+
T Consensus        15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~   94 (128)
T cd08392          15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR   94 (128)
T ss_pred             CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence            4899999999999988865 999999999993     237799999 999999999999997653   579999999999


Q ss_pred             CC-CCceeEEEEEeccccccC---Ceeeeeeece
Q 005132          436 IF-GDENMGSARVNLEGLVEG---SVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~---~~~~~w~~L~  465 (713)
                      .+ ++++||++.|+|.++...   .....||+|.
T Consensus        95 ~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          95 TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            87 889999999999998643   3577899874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.63  E-value=2.5e-15  Score=137.19  Aligned_cols=92  Identities=29%  Similarity=0.492  Sum_probs=83.2

Q ss_pred             CCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCC
Q 005132          492 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNAL  567 (713)
Q Consensus       492 ~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~D~d~~  567 (713)
                      .....+.|+|+|++|++|+. +..+.+||||+|++++.+++|+++++++||+|||+|.|..    ....|.|+|||+|.+
T Consensus        23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            45677999999999999984 6678899999999999999999999999999999999973    267999999999999


Q ss_pred             CCCCeeEEEEEEceecC
Q 005132          568 LASSSIGDCVVEYQRLP  584 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~  584 (713)
                      ++|++||++.++|....
T Consensus       102 s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         102 WDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCeeEEEEEEecCCc
Confidence            99999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.63  E-value=3.3e-15  Score=139.87  Aligned_cols=93  Identities=14%  Similarity=0.355  Sum_probs=81.1

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-EEEEeecCCCCCCcccceEEEEEec
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHE  251 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-~~~tt~i~~~~nP~WnEtf~~~v~~  251 (713)
                      |.|+|+|++|++|+..+. +++                      ||||++.++. ..+|++++++.||+|||+|.|.+.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~s----------------------DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~   58 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSS----------------------DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN   58 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCc----------------------CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC
Confidence            899999999999998776 443                      9999999975 4566668899999999999999988


Q ss_pred             CCceEEEEEEEeCCCCCccceeEEEEEEcccccCCccc
Q 005132          252 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT  289 (713)
Q Consensus       252 ~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~  289 (713)
                      ..+.|.|+|||+|. +.+||+||.++++++++.....+
T Consensus        59 ~~~~l~~~V~D~d~-~~~dd~iG~a~i~l~~l~~~~~~   95 (145)
T cd04038          59 PMAPLKLEVFDKDT-FSKDDSMGEAEIDLEPLVEAAKL   95 (145)
T ss_pred             CCCEEEEEEEECCC-CCCCCEEEEEEEEHHHhhhhhhh
Confidence            88999999999997 47889999999999999865443

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.62  E-value=2.9e-15  Score=137.17  Aligned_cols=115  Identities=23%  Similarity=0.325  Sum_probs=98.4

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEECC--eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCc
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~~--~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~  440 (713)
                      |.|.|+|++|++|+..+ ..+.+||||++.+++  ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            68999999999998655 456799999999976  78999999 99999999999999886688999999999888 899


Q ss_pred             eeEEEEEeccccccCCeee-eeeece--ecccceEEEEEEEEe
Q 005132          441 NMGSARVNLEGLVEGSVRD-IWVPLE--KVNTGELRLQIEATR  480 (713)
Q Consensus       441 ~lG~~~i~l~~l~~~~~~~-~w~~L~--~~~~G~I~l~l~~~~  480 (713)
                      +||.+.+++.++....... .|+.+.  +...|+|+++++|.|
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            9999999999998766543 344443  345899999999974

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.62  E-value=5.5e-15  Score=137.53  Aligned_cols=115  Identities=24%  Similarity=0.428  Sum_probs=97.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC----------CCceEEEEEEEec
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNEE  435 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~----------~~~~l~i~V~d~~  435 (713)
                      .|+|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||.|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            689999999999999999999999999999999999999 99999999999997532          1257999999999


Q ss_pred             CC-CCceeEEEEE-ecccccc---CCeeeeeeeceec--ccceEEEEEEEEee
Q 005132          436 IF-GDENMGSARV-NLEGLVE---GSVRDIWVPLEKV--NTGELRLQIEATRV  481 (713)
Q Consensus       436 ~~-~d~~lG~~~i-~l~~l~~---~~~~~~w~~L~~~--~~G~I~l~l~~~~~  481 (713)
                      .. +|++||++.+ ++..+..   .....+|++|...  ..|+|.++++++++
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            87 7899999997 4444432   3467899999853  47999999999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.62  E-value=2.4e-15  Score=134.91  Aligned_cols=95  Identities=25%  Similarity=0.431  Sum_probs=84.9

Q ss_pred             cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEceecCC-CCc
Q 005132          514 LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP-NQM  588 (713)
Q Consensus       514 ~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~-~~~  588 (713)
                      .+|.+||||+++++++ ..+|++++++.||+|||+|.|.+.   ...|.|+|+|++.+ +|++||++.++|+++.. ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            5788999999999885 679999999999999999999985   36699999999999 89999999999998843 345


Q ss_pred             eeeEEEcCCCCCcEEEEEEEE
Q 005132          589 ADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       589 ~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ..+|++|.+.+.|+|+++++|
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~  108 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALW  108 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEE
Confidence            689999998889999999998

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.62  E-value=1.8e-15  Score=135.77  Aligned_cols=91  Identities=19%  Similarity=0.365  Sum_probs=78.1

Q ss_pred             cEEEEEEEeeCCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEeC----cEEEEeecCCCCCCcccceEEE
Q 005132          173 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM  247 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~-~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g----~~~~tt~i~~~~nP~WnEtf~~  247 (713)
                      |+|+|+|++|++|+..+.. |++                      ||||+|.+.    ...+|++++++.||+|||+|.|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~----------------------Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f   58 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSS----------------------DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV   58 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCC----------------------CccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence            8999999999999988865 543                      999999983    3467777899999999999999


Q ss_pred             EEecC----CceEEEEEEEeCCCCCccceeEEEEEEcccccCC
Q 005132          248 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  286 (713)
Q Consensus       248 ~v~~~----~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~  286 (713)
                      .+...    .+.|.|+|||+|.. .++|+||.+.+++.++..+
T Consensus        59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIED  100 (111)
T ss_pred             EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcC
Confidence            87543    46899999999983 6889999999999999864

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.62  E-value=5.2e-15  Score=135.76  Aligned_cols=99  Identities=27%  Similarity=0.471  Sum_probs=85.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+..+.+||||++++..     ..++|+++ ++.||+|||+|.|.+..    ....|.|+|||++
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~   95 (125)
T cd04031          16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD   95 (125)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence            58999999999999988889999999999943     57899999 99999999999998644    2578999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeece
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .. ++++||++.+++.+.. ......||+|+
T Consensus        96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            87 7899999999999933 33346899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.62  E-value=3.6e-15  Score=134.71  Aligned_cols=106  Identities=29%  Similarity=0.507  Sum_probs=93.8

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |+|+|++|++|+..+..+.+||||+|.+.+ ..++|+++.++.||.|||+|.|.+.   ...+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999998888999999999976 4579999999999999999999984   468999999999999999999


Q ss_pred             EEEEEceecCCCCceeeEEEcCCC---CCcEEE
Q 005132          575 DCVVEYQRLPPNQMADKWIPLQGV---RKGEIH  604 (713)
Q Consensus       575 ~~~i~L~~l~~~~~~~~w~~L~~~---~~G~i~  604 (713)
                      ++.+++.++..+.....|++|.+.   ..|.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            999999999888889999999743   335553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.62  E-value=3e-15  Score=140.15  Aligned_cols=88  Identities=32%  Similarity=0.595  Sum_probs=82.3

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |.|+|+|++|++|+..+. +.+||||++++++++++|+++++++||+|||+|.|.+.  ...|.|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999998887 89999999999999999999999999999999999984  568999999999999999999


Q ss_pred             EEEEEceecCC
Q 005132          575 DCVVEYQRLPP  585 (713)
Q Consensus       575 ~~~i~L~~l~~  585 (713)
                      ++.+++..+..
T Consensus        81 ~a~i~l~~l~~   91 (145)
T cd04038          81 EAEIDLEPLVE   91 (145)
T ss_pred             EEEEEHHHhhh
Confidence            99999988754

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.62  E-value=2.8e-15  Score=140.78  Aligned_cols=99  Identities=28%  Similarity=0.435  Sum_probs=86.1

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEe------------C----CC
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI------------G----GG  424 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~------------~----~~  424 (713)
                      .|.|+|++|++|..  ..|.+||||+|++..     ..++|+++ ++.||+|||+|.|.+.            .    ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            38999999999987  568999999999954     57899999 9999999999999984            1    13


Q ss_pred             ceEEEEEEEecCC-CCceeEEEEEeccccccC-Ceeeeeeeceec
Q 005132          425 ECLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV  467 (713)
Q Consensus       425 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~  467 (713)
                      ..|.|.|||++.. +|++||++.|++.++..+ .....||+|+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            5799999999987 899999999999999876 567899999764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.61  E-value=1e-14  Score=133.97  Aligned_cols=112  Identities=18%  Similarity=0.253  Sum_probs=97.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  444 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~  444 (713)
                      .+++|+|++|++|...+..|.+||||++.++++.++|+++ ++.||.|||.|.|.+......|.|+|||++..+|++||.
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~   82 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQ   82 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEE
Confidence            4899999999999998888999999999999999999999 999999999999988777889999999998888999999


Q ss_pred             EEEeccccccCCeeeeeeecee-------cccceEEEEEEEE
Q 005132          445 ARVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT  479 (713)
Q Consensus       445 ~~i~l~~l~~~~~~~~w~~L~~-------~~~G~I~l~l~~~  479 (713)
                      +.+++.++.  .....|++|..       ...|+|.+++.+.
T Consensus        83 ~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          83 ATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             EEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            999998764  33446777742       2368888887654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.61  E-value=9.9e-15  Score=135.16  Aligned_cols=109  Identities=24%  Similarity=0.317  Sum_probs=91.3

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC-------------eEEEEEeeeCCCCCee-eeEEEEec-CCCeEEEEEE
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-------------LKKRTKVIFKTLNPQW-HQTLEFPD-DGSPLTLHVR  562 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~~~f~v-~~~~l~i~V~  562 (713)
                      .+.|.+++|+||+ .+..|.+||||++++.+             ++++|+++++|+||+| ||+|.|.+ ....|.++||
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~   80 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK   80 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence            3678999999998 67789999999999942             3689999999999999 99999998 4678999999


Q ss_pred             ECCCCCC---CCeeEEEEEEceecCCC---CceeeEEEcCC-----CCCcEEEEEE
Q 005132          563 DHNALLA---SSSIGDCVVEYQRLPPN---QMADKWIPLQG-----VRKGEIHVLI  607 (713)
Q Consensus       563 D~d~~~~---d~~iG~~~i~L~~l~~~---~~~~~w~~L~~-----~~~G~i~~~l  607 (713)
                      |++..++   +++||++.+++.++..+   ....+||+|..     ..+|+|.+.+
T Consensus        81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9876544   79999999999998644   35789999963     3358888765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.60  E-value=6.1e-15  Score=132.75  Aligned_cols=98  Identities=19%  Similarity=0.304  Sum_probs=85.4

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA  445 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~  445 (713)
                      +.|.|+|++|++|+..+   ..||||+|.+++++.+|++.++.||.|||.|.|.+......|.|+|||++...|++||++
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v   78 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTV   78 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEE
Confidence            47999999999997544   468999999999999999993369999999999987776679999999997799999999


Q ss_pred             EEeccccccCCe--eeeeeecee
Q 005132          446 RVNLEGLVEGSV--RDIWVPLEK  466 (713)
Q Consensus       446 ~i~l~~l~~~~~--~~~w~~L~~  466 (713)
                      .++|.++..+..  ...||+|+.
T Consensus        79 ~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          79 WIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEhHHcccCCCCCCCccEecCh
Confidence            999999986554  479999984

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.60  E-value=5.1e-15  Score=135.55  Aligned_cols=111  Identities=27%  Similarity=0.352  Sum_probs=90.0

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCeE--EEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~  572 (713)
                      .++|.|++|++|++.+..|.+||||++++++.+  .+|+++++|+||+|||+|.|.+.   ...|.|+|||+|.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            479999999999999999999999999998864  57888999999999999999863   5689999999999999999


Q ss_pred             eEEEEEEceecCCCCceeeEEEcCC--CCCcEEEEEEEE
Q 005132          573 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~i~~~l~~  609 (713)
                      ||++.++|++.... ...+|.-+..  ...|.++..-.+
T Consensus        81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd04037          81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSL  118 (124)
T ss_pred             eEEEEEeecccccc-hHHHhccCCCcccccCceecCccc
Confidence            99999999877532 1222222321  245777766665

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.60  E-value=1.1e-14  Score=133.91  Aligned_cols=100  Identities=27%  Similarity=0.337  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~   95 (127)
T cd04030          16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS   95 (127)
T ss_pred             CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence            4899999999999999988999999999993     458999999 999999999999997653   5789999999986


Q ss_pred             C---CCceeEEEEEeccccccCCeeeeeeece
Q 005132          437 F---GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       437 ~---~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .   ++++||.+.+++.++..+.....||+|+
T Consensus        96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ccCCCCceEEEEEEecccccccCCccceEECc
Confidence            3   7899999999999998777788999884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.60  E-value=1.2e-14  Score=139.17  Aligned_cols=103  Identities=24%  Similarity=0.384  Sum_probs=90.2

Q ss_pred             CccEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEE
Q 005132          364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYN  433 (713)
Q Consensus       364 ~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d  433 (713)
                      +.|.|.|+|++|+||+..+..+.+||||++++     +...+||+++ ++.||.|||+|.|.+...    ...|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            34799999999999999998899999999988     2358999999 999999999999985432    4589999999


Q ss_pred             ecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          434 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       434 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      ++.+ ++++||++.+++.++........|+++.+
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9988 79999999999999987777788998875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.60  E-value=1.9e-14  Score=132.44  Aligned_cols=100  Identities=23%  Similarity=0.287  Sum_probs=85.3

Q ss_pred             cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEE-EeC---CCceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+.. +.+||||++++.   ++++||+++ ++.||.|||+|.|. +..   ....|.|+|||++.
T Consensus        16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~   95 (128)
T cd08388          16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR   95 (128)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence            4899999999999988875 899999999983   457899999 99999999999995 332   24579999999988


Q ss_pred             C-CCceeEEEEEeccccccC--Ceeeeeeece
Q 005132          437 F-GDENMGSARVNLEGLVEG--SVRDIWVPLE  465 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~--~~~~~w~~L~  465 (713)
                      + ++++||++.++|.++...  .+...|++|+
T Consensus        96 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          96 YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            8 899999999999998654  5677898875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.59  E-value=1.2e-14  Score=133.17  Aligned_cols=110  Identities=25%  Similarity=0.429  Sum_probs=92.4

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEec-CCCeEEEEEEECCCCCCCCeeE
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPD-DGSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v-~~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      ..|+|+|.+|+ |...+..+.+||||++++++. ..+|+++++|+||.|||+|.|.+ ....|.|+|||++..+.|++||
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence            46899999998 555555788999999999887 89999999999999999999998 4678999999999999999999


Q ss_pred             EEEEEceecCCCC---c--eeeEEEcCC------CCCcEEEEEE
Q 005132          575 DCVVEYQRLPPNQ---M--ADKWIPLQG------VRKGEIHVLI  607 (713)
Q Consensus       575 ~~~i~L~~l~~~~---~--~~~w~~L~~------~~~G~i~~~l  607 (713)
                      ++.++|+++....   .  ...|++|..      ...|+|.+.+
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            9999999885432   2  345899852      3368888765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.59  E-value=1.3e-14  Score=132.69  Aligned_cols=99  Identities=28%  Similarity=0.426  Sum_probs=87.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEE-EeC---CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|+||+..+..|..||||++.+   .+..++|+++ + .||+|||+|.|. +..   ....|.|.|||++.+
T Consensus        16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~   94 (124)
T cd08389          16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM   94 (124)
T ss_pred             CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence            489999999999999988899999999887   2457899988 7 999999999998 443   267899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                       ++++||++.++|+++..+.....|++|+
T Consensus        95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          95 RKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence             7999999999999998888889999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.59  E-value=1.2e-14  Score=133.62  Aligned_cols=108  Identities=37%  Similarity=0.649  Sum_probs=93.6

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC--------
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF--------  437 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~--------  437 (713)
                      .|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||+|.|.+..+...|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            689999999999999988999999999999899999999 99999999999999876677899999998741        


Q ss_pred             ----CCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEE
Q 005132          438 ----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQI  476 (713)
Q Consensus       438 ----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l  476 (713)
                          .+++||.+.+++.++..  ....||+|+..     .+|+|.+++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence                58999999999998743  34689999863     267887763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.59  E-value=2.5e-14  Score=133.10  Aligned_cols=109  Identities=21%  Similarity=0.299  Sum_probs=93.7

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCC-C---C
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA-L---L  568 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~-~---~  568 (713)
                      ...|.|.|++|++|++++     ||||.+.+++.. .||+++.++.||.|+|.|.|++.  -..++|.|++.+. .   .
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            367899999999999864     899999999987 59999999999999999999974  3679999976543 2   2


Q ss_pred             CCCeeEEEEEEceecCCCCceeeEEEcCCC-------------CCcEEEEEEEE
Q 005132          569 ASSSIGDCVVEYQRLPPNQMADKWIPLQGV-------------RKGEIHVLITR  609 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-------------~~G~i~~~l~~  609 (713)
                      ++++||.+.||+.++..+...+.||+|.+.             ..+.|+++++|
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf  138 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY  138 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence            678999999999999999899999999631             23799999999

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.59  E-value=1.8e-14  Score=132.56  Aligned_cols=110  Identities=28%  Similarity=0.387  Sum_probs=98.0

Q ss_pred             EEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecCC-CCceeEEEE
Q 005132          372 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR  446 (713)
Q Consensus       372 I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~lG~~~  446 (713)
                      |++|++|+.  ..|.+||||++++++..++|+++ ++.||+|||+|.|.+..   ....|.|+|||++.. ++++||.+.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            689999987  67899999999999999999999 99999999999999865   368999999999887 889999999


Q ss_pred             EeccccccCCeeeeeeeceec----ccceEEEEEEEEeecC
Q 005132          447 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVDD  483 (713)
Q Consensus       447 i~l~~l~~~~~~~~w~~L~~~----~~G~I~l~l~~~~~~~  483 (713)
                      ++++++..+.....|++|.+.    ..|+|++++.|.+.+.
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            999999988888899999643    2589999999997654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.59  E-value=8.7e-15  Score=133.33  Aligned_cols=99  Identities=17%  Similarity=0.274  Sum_probs=87.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--C----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+..+..+.+||||++++  +    +..+||+++ ++.||+|||+|.|.+...   ...|.|.|||++
T Consensus        14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~   93 (124)
T cd08680          14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG   93 (124)
T ss_pred             CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence            589999999999999888899999999998  2    248999999 999999999999997663   679999999998


Q ss_pred             CC-CCceeEEEEEeccccccC-Ceeeeeeec
Q 005132          436 IF-GDENMGSARVNLEGLVEG-SVRDIWVPL  464 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~-~~~~~w~~L  464 (713)
                      .. ++++||.+.++|.++... .....||+|
T Consensus        94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          94 PDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            87 899999999999999544 357789876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.59  E-value=2.3e-14  Score=131.70  Aligned_cols=111  Identities=25%  Similarity=0.484  Sum_probs=97.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCc
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~  440 (713)
                      .+.|+|++|++|+..+..+.+||||++.+++   ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            6899999999999988889999999999853   47899999 999999999999998774 67899999999987 899


Q ss_pred             eeEEEEEecccccc---CCeeeeeeeceecccceEEEEEEEE
Q 005132          441 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      +||.+.+++.++..   +.....|++|..  .|++++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence            99999999988653   335678999975  69999998876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.59  E-value=2e-14  Score=131.99  Aligned_cols=100  Identities=21%  Similarity=0.415  Sum_probs=88.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+..+.+||||++++   +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||++.+
T Consensus        16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~   95 (125)
T cd08386          16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF   95 (125)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence            489999999999999888899999999999   3567899999 99999999999997533    245799999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                       ++++||.+.+++.++..+.....|++|.
T Consensus        96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             cCCcEeeEEEEecccccCCCCcceEEecC
Confidence             7899999999999998877888999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.58  E-value=1.2e-14  Score=133.04  Aligned_cols=108  Identities=17%  Similarity=0.330  Sum_probs=92.7

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEC-CeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-C--Ccee
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM  442 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~--d~~l  442 (713)
                      |+|+|++|++|+..+..+.+||||+++++ .+.++|+++ ++.||.|||+|.|.+.. ...|.|+|||++.+ .  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999998988999999999995 778999999 99999999999999865 78999999999887 2  5899


Q ss_pred             EEEEEeccccccCC-eeeeeeeceecc-------cceEEEEE
Q 005132          443 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI  476 (713)
Q Consensus       443 G~~~i~l~~l~~~~-~~~~w~~L~~~~-------~G~I~l~l  476 (713)
                      |.+.+++.++.... ....|++|....       .|+|.+++
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999987554 346799996533       46666654

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.58  E-value=9e-15  Score=131.02  Aligned_cols=99  Identities=24%  Similarity=0.478  Sum_probs=88.1

Q ss_pred             EEEEEEEeEcCCCCCC-CCCCCcEEEEEECCeEEeccCC-CCCCCcc-ceEEEEEEeCC---CceEEEEEEEecCC-CCc
Q 005132          368 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~-~g~~dpyv~v~l~~~~~kT~~~-~t~nP~w-ne~f~f~v~~~---~~~l~i~V~d~~~~-~d~  440 (713)
                      |.|+|++|++|+..+. .+.+||||++++++..+||+++ ++.||.| ||+|.|.+...   ...|.|+|||++.. +++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999998874 6889999999999999999999 9999999 99999998763   47899999999987 789


Q ss_pred             eeEEEEEecccccc---CCeeeeeeecee
Q 005132          441 NMGSARVNLEGLVE---GSVRDIWVPLEK  466 (713)
Q Consensus       441 ~lG~~~i~l~~l~~---~~~~~~w~~L~~  466 (713)
                      +||++.+++.++..   +...+.||+|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999987   345788999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=3.5e-14  Score=128.63  Aligned_cols=105  Identities=31%  Similarity=0.519  Sum_probs=85.9

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecCC-----CeEEEEEEECCCCCCCCe
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG-----SPLTLHVRDHNALLASSS  572 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~-----~~l~i~V~D~d~~~~d~~  572 (713)
                      |+|+|++|++|+..   |.+||||++++++. .++|+++++ .||.|||+|.|.+..     ..|.+.+||.+..+++.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   78999999999885 479999999 999999999999854     357788888887766666


Q ss_pred             eEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          573 IGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       573 iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      +|.+.  +..+..+.....||+|.+.     ..|+|++++.|
T Consensus        78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            66655  4555557778999999753     36999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.57  E-value=3.2e-14  Score=130.14  Aligned_cols=99  Identities=22%  Similarity=0.399  Sum_probs=87.4

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+..+ ..+.+||||++++.  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   93 (123)
T cd08521          14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD   93 (123)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence            58999999999999888 77899999999982  1   46899999 999999999999997653   568999999998


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                      .. ++++||.+.+++.++..+...+.||+|
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCcCCceeeEEEEecccccccCCCccEEEC
Confidence            87 789999999999999877778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.57  E-value=1.2e-14  Score=136.75  Aligned_cols=105  Identities=18%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             EEEEEEEEeEcCCCCCCC--------------CCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEE
Q 005132          367 KINVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMV  429 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~--------------g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i  429 (713)
                      +|.|+|++|++|+.++..              +.+||||+|.++++..+|+++ ++.||+|||+|.|.+..+  ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            378999999999988744              368999999999999999999 999999999999997543  679999


Q ss_pred             EEEEecCC-CCceeEEEEEeccccccCCe-------eeeeeeceecccce
Q 005132          430 KCYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE  471 (713)
Q Consensus       430 ~V~d~~~~-~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~  471 (713)
                      +|||++.. +|++||.+.+++.++.....       ...|+.|.+..++.
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            99999988 99999999999999876543       35788887765554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.57  E-value=1.4e-14  Score=132.00  Aligned_cols=95  Identities=24%  Similarity=0.344  Sum_probs=85.1

Q ss_pred             EEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCC----C
Q 005132          502 VIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNA----L  567 (713)
Q Consensus       502 ~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~D~d~----~  567 (713)
                      ..++|++|+..+..|.+||||++++.+.       .++|+++++|+||+|||+|.|.+   ....|.|+|||+|.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            4588999999998899999999999664       48999999999999999999975   35689999999997    8


Q ss_pred             CCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          568 LASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      ++|++||++.+++.++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            89999999999999998877788899994

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.56  E-value=1.8e-14  Score=131.54  Aligned_cols=92  Identities=21%  Similarity=0.343  Sum_probs=76.3

Q ss_pred             ccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-cEEEEeecCCCCCCcccceEE
Q 005132          168 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFN  246 (713)
Q Consensus       168 ~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~~~~tt~i~~~~nP~WnEtf~  246 (713)
                      +.++ |.|+|+|++|++|+. +..|++                      ||||+|+++ ...+|++++++.||+|||+|.
T Consensus        24 ~~~~-~~L~V~V~~A~~L~~-d~~g~~----------------------DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~   79 (127)
T cd04032          24 RRGL-ATLTVTVLRATGLWG-DYFTST----------------------DGYVKVFFGGQEKRTEVIWNNNNPRWNATFD   79 (127)
T ss_pred             cCCc-EEEEEEEEECCCCCc-CcCCCC----------------------CeEEEEEECCccccCceecCCCCCcCCCEEE
Confidence            4444 999999999999974 444433                      999999995 556777788999999999999


Q ss_pred             EEEec--CCceEEEEEEEeCCCCCccceeEEEEEEccccc
Q 005132          247 MVLHE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  284 (713)
Q Consensus       247 ~~v~~--~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~  284 (713)
                      |....  ..+.|.|+|||+|. ..++|+||+++++|....
T Consensus        80 f~~~~~~~~~~L~v~V~D~d~-~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          80 FGSVELSPGGKLRFEVWDRDN-GWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             EecccCCCCCEEEEEEEeCCC-CCCCCeeEEEEEEecCCc
Confidence            97533  37899999999998 368999999999999766

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.56  E-value=1.5e-14  Score=136.26  Aligned_cols=103  Identities=13%  Similarity=0.291  Sum_probs=84.3

Q ss_pred             cCcceeecccccc---c-----cccccccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEe
Q 005132          153 EPRRRCYSLPAVD---L-----RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL  224 (713)
Q Consensus       153 ~P~~~~~~l~~~~---l-----~~~~~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~  224 (713)
                      +|+.  |.++.++   |     ...+..+.|.|+|++|++|...|..|.+                      ||||+|.+
T Consensus         2 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l   57 (153)
T cd08676           2 AQQA--FGVSPEEHEALLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGI   57 (153)
T ss_pred             hHHh--hCCCHHHHHHHHHHHHhcCCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEE
Confidence            4566  6666555   3     2344469999999999999998876654                      99999998


Q ss_pred             Cc------------------------------EEEEeecCCCCCCcccceEEEEEecC-CceEEEEEEEeCCCCCcccee
Q 005132          225 EE------------------------------LTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYL  273 (713)
Q Consensus       225 g~------------------------------~~~tt~i~~~~nP~WnEtf~~~v~~~-~~~L~~~v~d~d~~~~~dd~l  273 (713)
                      +.                              ..+|++++++.||+|||+|.|.+... .+.|.|+|||++     +++|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~I  132 (153)
T cd08676          58 VPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFL  132 (153)
T ss_pred             cccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeE
Confidence            52                              24666678999999999999999775 689999999987     7899


Q ss_pred             EEEEEEccccc
Q 005132          274 TSCEVKMKYVA  284 (713)
Q Consensus       274 G~~~i~l~~l~  284 (713)
                      |.+.+++.++.
T Consensus       133 G~v~i~l~~l~  143 (153)
T cd08676         133 GCVNIPLKDLP  143 (153)
T ss_pred             EEEEEEHHHhC
Confidence            99999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.56  E-value=5.2e-14  Score=125.05  Aligned_cols=93  Identities=15%  Similarity=0.351  Sum_probs=75.9

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEEC-------C
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDH-------N  565 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~-------d  565 (713)
                      |.|+|.+|+||+     +.+||||++.+.+     .+.+|+++++|+||+|||+|.|++. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccc
Confidence            579999999995     4699999999953     3689999999999999999999985 67899999998       5


Q ss_pred             CCCCCCeeEEEEEEce--ecCCCCceeeEEEcC
Q 005132          566 ALLASSSIGDCVVEYQ--RLPPNQMADKWIPLQ  596 (713)
Q Consensus       566 ~~~~d~~iG~~~i~L~--~l~~~~~~~~w~~L~  596 (713)
                      ..+.|+.+|.+.+.|+  .+........-+.|.
T Consensus        76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~  108 (118)
T cd08686          76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN  108 (118)
T ss_pred             ccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence            6788999998888775  344444445555555

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.56  E-value=3e-14  Score=129.60  Aligned_cols=107  Identities=21%  Similarity=0.314  Sum_probs=93.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l  442 (713)
                      |.|.|+|++|++|+..+..+.+||||++++++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            58999999999999988889999999999976 57999999 99999999999999877778999999999988 78999


Q ss_pred             EEEEEeccccccCCeeeeeeeceecccceEE
Q 005132          443 GSARVNLEGLVEGSVRDIWVPLEKVNTGELR  473 (713)
Q Consensus       443 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~  473 (713)
                      |++.+++.++..+ ..+.||.|-+.+.+.+.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            9999999999877 45678888776555543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.56  E-value=4.6e-14  Score=129.12  Aligned_cols=100  Identities=19%  Similarity=0.377  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+ ..+.+||||++++   +...++|+++ ++.||+|||.|.|.+...   ...|.|+|||++..
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~   93 (123)
T cd08390          14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF   93 (123)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence            48999999999999888 6789999999998   3457899999 999999999999997653   46899999999887


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                       ++++||++.++|.++........|++|+
T Consensus        94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence             7899999999999999888888999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>PLN03008 Phospholipase D delta

Probab=99.55  E-value=3.4e-14  Score=161.17  Aligned_cols=97  Identities=23%  Similarity=0.385  Sum_probs=86.0

Q ss_pred             CCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeE
Q 005132          516 GTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW  592 (713)
Q Consensus       516 g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w  592 (713)
                      +++||||+|.++++ ..||+++++++||+|||+|.|++.  ...|.|+|+|+|.++ +++||++.|||.++..+.....|
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~W  153 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGW  153 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEE
Confidence            57899999999876 459999999999999999999984  578999999999997 57999999999999999999999


Q ss_pred             EEcCC------CCCcEEEEEEEEEecCC
Q 005132          593 IPLQG------VRKGEIHVLITRKVPEL  614 (713)
Q Consensus       593 ~~L~~------~~~G~i~~~l~~~~p~~  614 (713)
                      ++|.+      +.+|+|+++++| .|-.
T Consensus       154 l~Ll~~~~kp~k~~~kl~v~lqf-~pv~  180 (868)
T PLN03008        154 FPVLGASGKPPKAETAIFIDMKF-TPFD  180 (868)
T ss_pred             EEccccCCCCCCCCcEEEEEEEE-EEcc
Confidence            99963      235899999999 6643

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.55  E-value=2.7e-14  Score=128.07  Aligned_cols=100  Identities=26%  Similarity=0.392  Sum_probs=88.0

Q ss_pred             CCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCCCCceeEEEEEeccccccC-Ce
Q 005132          382 DKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEG-SV  457 (713)
Q Consensus       382 ~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~-~~  457 (713)
                      ..+|.+||||+++++++ .++|+++ ++.||.|||.|.|.+.+. ...|.|+|+|++..+|++||.+.++|+++... ..
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            45688999999999774 6899999 999999999999998775 67899999999887899999999999998654 44


Q ss_pred             eeeeeeceecccceEEEEEEEEee
Q 005132          458 RDIWVPLEKVNTGELRLQIEATRV  481 (713)
Q Consensus       458 ~~~w~~L~~~~~G~I~l~l~~~~~  481 (713)
                      ...|++|.+...|+|++++.|.|+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEecC
Confidence            679999998788999999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.54  E-value=6.2e-14  Score=128.48  Aligned_cols=102  Identities=27%  Similarity=0.430  Sum_probs=92.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC----CceEEEEEEEecCC-C
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~-~  438 (713)
                      |.|.|+|++|++|+..+..+.+||||++.+++..++|++. + +.||.||++|.|.+..+    ...|.|+|||++.+ +
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            5799999999999988888999999999999888999988 4 89999999999998776    57899999999888 8


Q ss_pred             CceeEEEEEeccccccCCeeeeeeeceec
Q 005132          439 DENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      +++||.+.+++.++..+...+.|+.|...
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999987778899999875

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.54  E-value=5.4e-14  Score=130.19  Aligned_cols=106  Identities=32%  Similarity=0.505  Sum_probs=93.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+..+.+||||++.+.     ...++|+++ ++.||.|||+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            4899999999999988888899999999994     368999999 999999999999997654  56899999999877


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecccceE
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  472 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I  472 (713)
                       ++++||.+.++++++... ....||+|.+...|+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence             889999999999999855 6678999998888865

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.54  E-value=4.4e-14  Score=126.77  Aligned_cols=97  Identities=20%  Similarity=0.377  Sum_probs=86.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-----CceEEEEEEEecCC-C
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-G  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-~  438 (713)
                      +.|+|+|++|++|.    .|.+||||+++++++.++|+++ ++.||.|||+|.|.+..+     ...|.|+|||++.+ +
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~   79 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS   79 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence            57999999999998    5789999999999999999999 999999999999997543     46899999999987 7


Q ss_pred             CceeEEEEEeccccccCC---eeeeeeecee
Q 005132          439 DENMGSARVNLEGLVEGS---VRDIWVPLEK  466 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~~---~~~~w~~L~~  466 (713)
                      +++||.+.+++.++..+.   ....|++|.+
T Consensus        80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            899999999999997654   3578999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.53  E-value=3.8e-14  Score=130.06  Aligned_cols=108  Identities=24%  Similarity=0.364  Sum_probs=93.1

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC--CCCCCccceEEEEEEeCC-----CceEEEEEEEecCC-
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-  437 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~--~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-  437 (713)
                      +|.|+|++|++|+..+..+.+||||++++++ ..++|++.  ++.||.|||.|.|.+...     ...|.|+|||++.. 
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3899999999999888889999999999987 88999997  589999999999998776     68999999999886 


Q ss_pred             CCceeEEEEEeccccccCCe-----eeeeeeceec---ccceEEE
Q 005132          438 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELRL  474 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~---~~G~I~l  474 (713)
                      +|++||.+.+++.++..+..     ...||+|...   ..|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            89999999999999986553     4689999853   3566653

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.8e-15  Score=149.17  Aligned_cols=202  Identities=27%  Similarity=0.358  Sum_probs=165.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC----C-eEEeccCC-CCCCCccceEEEEEEeC--C--CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----K-IVQRTRTA-HSPNHVWNQKFELDEIG--G--GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~----~-~~~kT~~~-~t~nP~wne~f~f~v~~--~--~~~l~i~V~d~~  435 (713)
                      ..+..++.+|++|.+++.++..|||++..+.    + ..++|++. ++.||.|+|+.......  +  ...+++.|.|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            3789999999999999999999999999883    1 25888899 99999999887665332  2  457788888888


Q ss_pred             CC-CCceeEEEEEeccccccCCe--eeeeeece----e------cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEE
Q 005132          436 IF-GDENMGSARVNLEGLVEGSV--RDIWVPLE----K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELV  502 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~--~~~w~~L~----~------~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~  502 (713)
                      .+ .++++|+..+++..+.....  -..|+.-.    .      ...|+|.+++.|.              .....+.|.
T Consensus       173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt  238 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVT  238 (362)
T ss_pred             ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEE
Confidence            88 88999999999888875443  12333211    1      2368999999876              677889999


Q ss_pred             EEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCe
Q 005132          503 IVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       503 v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~  572 (713)
                      ++++..|.+.|.+|.+||||..++..     .+++|.+.++|+||.||+.|.|.+.     ...+.|.|||++.....++
T Consensus       239 ~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~  318 (362)
T KOG1013|consen  239 IIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDS  318 (362)
T ss_pred             EEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccC
Confidence            99999999999999999999999954     3679999999999999999999973     6789999999998878889


Q ss_pred             eEEEEEEce
Q 005132          573 IGDCVVEYQ  581 (713)
Q Consensus       573 iG~~~i~L~  581 (713)
                      +|-+...+.
T Consensus       319 ~GG~~~g~~  327 (362)
T KOG1013|consen  319 IGGSMLGGY  327 (362)
T ss_pred             CCccccccc
Confidence            987766543

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.52  E-value=1.5e-13  Score=127.94  Aligned_cols=112  Identities=18%  Similarity=0.383  Sum_probs=95.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeE-EeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecC-C----C
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI-F----G  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~-~----~  438 (713)
                      ..|.|.|++|++|+.++     +|||+|.+++.. .||+++ ++.||.|+|.|.|....+...+.|.||..+. .    +
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~   85 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK   85 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence            37999999999998764     799999998875 699999 9999999999999866667789999976542 2    5


Q ss_pred             CceeEEEEEeccccccCCeeeeeeeceecc-------------cceEEEEEEEEeec
Q 005132          439 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRVD  482 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-------------~G~I~l~l~~~~~~  482 (713)
                      +.+||.+.|+++++..+...+.||+|.+..             .+.|+++++|.++.
T Consensus        86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            789999999999999888899999997532             26899999998653

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.52  E-value=8e-14  Score=127.62  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=76.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcE---EEEeecCCCCCCcccceEEEEEe
Q 005132          174 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDARPGSDPRWDSMFNMVLH  250 (713)
Q Consensus       174 vL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~---~~tt~i~~~~nP~WnEtf~~~v~  250 (713)
                      +|+|+|++|++|+..+..|++                      ||||+|.++..   .+|+.++++.||+|||+|.|.+.
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~   58 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKS----------------------DPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT   58 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCC----------------------CcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence            589999999999988876654                      99999999743   46777889999999999999986


Q ss_pred             cC-CceEEEEEEEeCCCCCccceeEEEEEEccccc
Q 005132          251 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  284 (713)
Q Consensus       251 ~~-~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~  284 (713)
                      .. .+.|.|+|||+|. ..++++||++.++|++..
T Consensus        59 ~~~~~~L~~~V~d~d~-~~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          59 LPGNSILKISVMDYDL-LGSDDLIGETVIDLEDRF   92 (124)
T ss_pred             CCCCCEEEEEEEECCC-CCCCceeEEEEEeecccc
Confidence            55 6799999999997 368899999999999866

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.51  E-value=3.1e-13  Score=127.15  Aligned_cols=112  Identities=24%  Similarity=0.309  Sum_probs=93.8

Q ss_pred             EEEEEEEeEc--CCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC---------CceEEEE
Q 005132          368 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK  430 (713)
Q Consensus       368 L~V~I~~a~~--L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~---------~~~l~i~  430 (713)
                      ..++|..|++  |+..+..+.+||||++++     +.+.+||+++ +|.||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4566677777  677777889999999987     2468999999 999999999999998544         3579999


Q ss_pred             EEEecCC--CCceeEEEEEeccccccCCeeeeeeeceec---ccceEEEEEEEE
Q 005132          431 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEAT  479 (713)
Q Consensus       431 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~I~l~l~~~  479 (713)
                      |||++.+  +|++||++.++|+.+..+.....|++|...   ..|+|.+++...
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence            9999986  799999999999999887777779998742   268999999876

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.50  E-value=2.1e-13  Score=123.16  Aligned_cols=100  Identities=30%  Similarity=0.500  Sum_probs=90.0

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCceeE
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.+|.|||+|.|.+... ...+.|+|||++.. ++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999888888999999999964 56899999 999999999999998764 67899999999887 799999


Q ss_pred             EEEEeccccccCCeeeeeeeceec
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      ++.+++.++..+.....|++|...
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCC
Confidence            999999999888888899999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.49  E-value=1.3e-13  Score=127.84  Aligned_cols=99  Identities=18%  Similarity=0.293  Sum_probs=82.4

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCe--EEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKI--VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~--~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+..|.+||||++++   ++.  +.||+++ ++.||+|||+|.|.+..   ....|.|+|||++.
T Consensus        15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~   94 (136)
T cd08406          15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE   94 (136)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence            379999999999999888899999999999   222  6789999 99999999999999765   36789999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      + ++++||++.+....  .+...+.|..+..
T Consensus        95 ~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          95 DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence            7 89999999997664  3444456665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.48  E-value=3.5e-13  Score=124.11  Aligned_cols=109  Identities=24%  Similarity=0.347  Sum_probs=91.8

Q ss_pred             ceEEEEEEEccCccccc--cCCCCCcEEEEEEC------CeEEEEEeeeCCC-CCeeeeEEEEecC---CCeEEEEEEEC
Q 005132          497 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYG------DLKKRTKVIFKTL-NPQWHQTLEFPDD---GSPLTLHVRDH  564 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~------~~~~kT~v~~~t~-nP~wne~~~f~v~---~~~l~i~V~D~  564 (713)
                      ..|+|+|++|++|+..+  ..+..||||++++.      ..+++|+++.++. ||.|||+|.|.+.   ...|.++|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            46899999999999887  57889999999993      4568999988775 9999999999963   34699999999


Q ss_pred             CCCCCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEE
Q 005132          565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  609 (713)
Q Consensus       565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~  609 (713)
                      +.. ++++||++.++++++..+   ..|++|.+     ...|.|.+.+++
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            988 899999999999999655   46888853     345899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.48  E-value=1.5e-13  Score=127.87  Aligned_cols=100  Identities=26%  Similarity=0.529  Sum_probs=89.5

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEC----CeEEeccCC-CCCCCccceEEEEEEeCC----------------Cce
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC  426 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~----~~~~kT~~~-~t~nP~wne~f~f~v~~~----------------~~~  426 (713)
                      |.|+|++|++|+.+ ..+.+||||+++++    ...++|+++ ++.||.|||+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999887 78899999999997    778999999 999999999999997653                468


Q ss_pred             EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                      |.|+|||++.. ++++||++.+++.++........||+|....
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            99999999988 8999999999999998777788999998753

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.48  E-value=3.6e-13  Score=121.97  Aligned_cols=105  Identities=29%  Similarity=0.473  Sum_probs=84.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCce
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~  441 (713)
                      |.|+|++|++|+..   +.+||||+++++++ .++|+++ + .||.|||+|.|.+...   ...|.|.+||.+.. ++..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999875   78999999999875 5899999 9 9999999999998763   46788888888765 5556


Q ss_pred             eEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132          442 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  478 (713)
Q Consensus       442 lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~  478 (713)
                      +|.+.  +..+..+...+.||+|.+..     .|+|++++.|
T Consensus        78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            66555  44555566678999998643     6999998865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.48  E-value=1.9e-13  Score=121.44  Aligned_cols=78  Identities=19%  Similarity=0.358  Sum_probs=64.6

Q ss_pred             EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC------cEEEEeecCCCCCCcccceEEEE
Q 005132          175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMFNMV  248 (713)
Q Consensus       175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g------~~~~tt~i~~~~nP~WnEtf~~~  248 (713)
                      |.|+|++|++|++     .+                      ||||++++.      ...+|+++++++||+|||+|.|.
T Consensus         1 L~V~V~~A~~L~~-----~s----------------------DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~   53 (118)
T cd08686           1 LNVIVHSAQGFKQ-----SA----------------------NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE   53 (118)
T ss_pred             CEEEEEeCCCCCC-----CC----------------------CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence            6799999999963     22                      999999993      24788889999999999999999


Q ss_pred             EecCCceEEEEEEEeC-------CCCCccceeEEEEEEcc
Q 005132          249 LHEETGTVRFNLYECI-------PGHVKYDYLTSCEVKMK  281 (713)
Q Consensus       249 v~~~~~~L~~~v~d~d-------~~~~~dd~lG~~~i~l~  281 (713)
                      +.+ .+.|++.|||++       . ..+|+++|++.+.|.
T Consensus        54 l~~-s~~L~~~v~d~~~~~~~~d~-~~~d~~~G~g~i~Ld   91 (118)
T cd08686          54 LEG-SQTLRILCYEKCYSKVKLDG-EGTDAIMGKGQIQLD   91 (118)
T ss_pred             eCC-CCEEEEEEEEcccccccccc-cCcccEEEEEEEEEC
Confidence            964 789999999983       3 257889988877664

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.47  E-value=7.8e-13  Score=122.54  Aligned_cols=89  Identities=13%  Similarity=0.232  Sum_probs=72.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC--------------cEEEEeecCCCCCC
Q 005132          174 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------------ELTRRTDARPGSDP  239 (713)
Q Consensus       174 vL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g--------------~~~~tt~i~~~~nP  239 (713)
                      +..|++++|++|+ .+..|++                      ||||++.+.              +..+|.+++++.||
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~----------------------DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP   58 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNP----------------------DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP   58 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCC----------------------CceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence            5689999999998 5555544                      999999993              24677778899999


Q ss_pred             cc-cceEEEEEecCCceEEEEEEEeCCCCC--ccceeEEEEEEcccccCC
Q 005132          240 RW-DSMFNMVLHEETGTVRFNLYECIPGHV--KYDYLTSCEVKMKYVADD  286 (713)
Q Consensus       240 ~W-nEtf~~~v~~~~~~L~~~v~d~d~~~~--~dd~lG~~~i~l~~l~~~  286 (713)
                      +| ||+|.|.+. .++.|.++|||++....  .+|+||.+.+++.++...
T Consensus        59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~  107 (137)
T cd08691          59 VWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER  107 (137)
T ss_pred             ceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence            99 999999984 46799999999874211  278999999999999864

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.47  E-value=1.6e-13  Score=127.23  Aligned_cols=97  Identities=21%  Similarity=0.332  Sum_probs=79.8

Q ss_pred             cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEe
Q 005132          366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNE  434 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~  434 (713)
                      +.|.|.|++|+||...+.  .+.+||||+|++..     .+.||+++ ++.||+|||.|.|.+...   ...|.|+|||+
T Consensus        15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~   94 (138)
T cd08407          15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ   94 (138)
T ss_pred             CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence            489999999999998873  35599999999831     26789999 999999999999998763   67899999999


Q ss_pred             cCC-CCceeEEEEEeccccccCCeeeeeeec
Q 005132          435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                      +.+ ++++||++.+++..  .+.+...|..+
T Consensus        95 d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          95 DSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             CCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            988 89999999999975  34344455544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1e-13  Score=171.27  Aligned_cols=114  Identities=18%  Similarity=0.358  Sum_probs=101.4

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL  567 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~D~d~~  567 (713)
                      ..-.|.|+|+|++|+||.  +..|.+||||++.++++ ++||++++++.||+|||+|.|.++    +..|+|+|||+|.+
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            355699999999999998  45689999999999965 889999999999999999997763    35799999999999


Q ss_pred             CCCCeeEEEEEEceecCCCCceeeEEEcCC--CCCcE---EEEEEEE
Q 005132          568 LASSSIGDCVVEYQRLPPNQMADKWIPLQG--VRKGE---IHVLITR  609 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~~~l~~  609 (713)
                      ++| .||++.|+|.++..+.....||+|.+  .+.|.   |++.|.|
T Consensus      2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200       2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred             CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEe
Confidence            655 99999999999999999999999985  56799   9999887

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.47  E-value=5.3e-13  Score=123.85  Aligned_cols=89  Identities=19%  Similarity=0.417  Sum_probs=79.6

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-------CeEEeccCC-CCCCCccceEEEEEEeCC-----CceEEEEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCY  432 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-------~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~  432 (713)
                      +.|.|+|++|++|+..+..+.+||||+|++.       ...++|+++ ++.||+|||+|.|.+...     ...|.|+||
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~   95 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK   95 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence            3799999999999998888999999999984       347999999 999999999999997652     468999999


Q ss_pred             EecCC-CCceeEEEEEecccccc
Q 005132          433 NEEIF-GDENMGSARVNLEGLVE  454 (713)
Q Consensus       433 d~~~~-~d~~lG~~~i~l~~l~~  454 (713)
                      |++.. ++++||++.++|+++..
T Consensus        96 d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          96 DYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             ecCCCCCCcEeEEEEEeHHHCCc
Confidence            99988 69999999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>PLN03008 Phospholipase D delta

Probab=99.47  E-value=3.2e-13  Score=153.45  Aligned_cols=99  Identities=21%  Similarity=0.444  Sum_probs=89.7

Q ss_pred             CCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeee
Q 005132          385 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV  462 (713)
Q Consensus       385 g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~  462 (713)
                      +.+||||+|.++++ +.||+++ ++.||+|||+|.|.+..+...|.|+|||++.+++++||.+.||++++..+...+.|+
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence            46799999999765 6799999 999999999999999888889999999999998899999999999999999999999


Q ss_pred             eceec------ccceEEEEEEEEeecC
Q 005132          463 PLEKV------NTGELRLQIEATRVDD  483 (713)
Q Consensus       463 ~L~~~------~~G~I~l~l~~~~~~~  483 (713)
                      +|.+.      ..|+|+++++|.|+..
T Consensus       155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~  181 (868)
T PLN03008        155 PVLGASGKPPKAETAIFIDMKFTPFDQ  181 (868)
T ss_pred             EccccCCCCCCCCcEEEEEEEEEEccc
Confidence            99763      2579999999999754

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.47  E-value=2.7e-13  Score=121.49  Aligned_cols=86  Identities=26%  Similarity=0.407  Sum_probs=75.4

Q ss_pred             EEEEEEccCccccccCCCCCcEEEEEECCe------EEEEEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCC
Q 005132          500 ELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNA  566 (713)
Q Consensus       500 ~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~------~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~D~d~  566 (713)
                      .+..++|++|+..+..|.+||||++++.+.      .++|+++++|+||+|| +|.|+..       ...|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            345679999999999999999999998543      5899999999999999 6888751       5789999999999


Q ss_pred             CCCCCeeEEEEEEceecCCC
Q 005132          567 LLASSSIGDCVVEYQRLPPN  586 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~~  586 (713)
                      +++|++||++.++++++..+
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcC
Confidence            99999999999999999744

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.46  E-value=3e-13  Score=126.03  Aligned_cols=99  Identities=24%  Similarity=0.384  Sum_probs=85.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||++++  ++   ..++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~   94 (136)
T cd08404          15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence            479999999999999998899999999998  22   26789999 99999999999999765   35679999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      + ++++||.+.+++..  .+.....|++|..
T Consensus        95 ~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          95 VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            8 89999999999998  3455678888865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.45  E-value=3.3e-13  Score=125.21  Aligned_cols=88  Identities=15%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC------cEEEEeecCCCCCCcccceE
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMF  245 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g------~~~~tt~i~~~~nP~WnEtf  245 (713)
                      .|.|.|+|++|++|+..+..|.+                      ||||+|.+.      ...+|++++++.||+|||+|
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~----------------------DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f   69 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYS----------------------DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEF   69 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCC----------------------CcEEEEEEEcCCCccCCceeeeEeccCCCCcccEE
Confidence            49999999999999988866643                      999999994      24567778899999999999


Q ss_pred             EEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEccc
Q 005132          246 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  282 (713)
Q Consensus       246 ~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~  282 (713)
                      .|.+...   ...|.|+|||+|.. .++++||.+.+++..
T Consensus        70 ~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~  108 (133)
T cd08384          70 FYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA  108 (133)
T ss_pred             EEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence            9998654   46899999999973 688999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.45  E-value=9.3e-13  Score=120.74  Aligned_cols=108  Identities=25%  Similarity=0.405  Sum_probs=89.5

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      .|.|+|.+|+ |...+..+.+||||+++++++ .++|+++ ++.||.|||.|.|.+. ....|.|+|||++.. .+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence            6999999999 544555788999999999877 8999999 9999999999999964 567899999999988 899999


Q ss_pred             EEEEeccccccCCe-----eeeeeeceecc------cceEEEEE
Q 005132          444 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI  476 (713)
Q Consensus       444 ~~~i~l~~l~~~~~-----~~~w~~L~~~~------~G~I~l~l  476 (713)
                      .+.+++.++.....     ...|+++....      .|+|.+.+
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999885432     23588886433      57777764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.45  E-value=1.3e-12  Score=119.56  Aligned_cols=99  Identities=26%  Similarity=0.426  Sum_probs=84.7

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+..+.+||||++++.     ...++|+++ ++.||.||++|.|.....    ...+.|+|||++
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~   94 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED   94 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence            4899999999999988888999999999982     247899999 999999999999964332    468999999998


Q ss_pred             CCCCceeEEEEEeccccccCCeeeeeeec
Q 005132          436 IFGDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       436 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                      ..++++||.+.++++++..+.....|+.|
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          95 RFGNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             CcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence            77889999999999999887776666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.45  E-value=3.5e-13  Score=125.55  Aligned_cols=99  Identities=19%  Similarity=0.352  Sum_probs=83.6

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+..|.+||||++++  ++   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~   94 (136)
T cd08405          15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence            589999999999998888899999999998  32   36789999 999999999999997542   4689999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      . ++++||.+.+++.+.  +.....|+++-.
T Consensus        95 ~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          95 LSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            8 789999999999885  444556766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.44  E-value=4.1e-13  Score=124.70  Aligned_cols=101  Identities=22%  Similarity=0.407  Sum_probs=88.4

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||.+.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~   93 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS   93 (134)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence            48999999999999888888999999999842     26799999 999999999999997664   5789999999988


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                      . ++++||.+.+++++  .+...+.|++|...+
T Consensus        94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            6 88999999999999  555678899988754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.44  E-value=4.5e-13  Score=124.78  Aligned_cols=90  Identities=18%  Similarity=0.286  Sum_probs=74.7

Q ss_pred             cccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc-------EEEEeecCCCCCCcccc
Q 005132          171 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPRWDS  243 (713)
Q Consensus       171 ~~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~-------~~~tt~i~~~~nP~WnE  243 (713)
                      ..|.|.|+|++|+||+..+..|.+                      ||||++.+.+       ..+|++++++.||+|||
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~----------------------dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnE   70 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAP----------------------DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKE   70 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCC----------------------CeeEEEEEEeCCCcceeeccceeecCCCCCcEee
Confidence            349999999999999988876644                      9999999931       23566678999999999


Q ss_pred             eEEEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEcccc
Q 005132          244 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  283 (713)
Q Consensus       244 tf~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l  283 (713)
                      +|.|.+...   +..|.|.|||++. ..++++||.+.+++...
T Consensus        71 tF~f~i~~~~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          71 TFVFQVALFQLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             eEEEECCHHHhCccEEEEEEEECCC-CCCCcEEEEEEECCcCC
Confidence            999998753   4699999999998 47899999999887653

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.44  E-value=4.7e-13  Score=124.72  Aligned_cols=100  Identities=21%  Similarity=0.341  Sum_probs=84.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||+|++.  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~   94 (136)
T cd08402          15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence            5899999999999998989999999999993  2   36789988 999999999999997643   3489999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      + ++++||.+.+++...  +.....|+++-..
T Consensus        95 ~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          95 IGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            8 789999999999763  3445667776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.42  E-value=8e-13  Score=122.89  Aligned_cols=87  Identities=20%  Similarity=0.325  Sum_probs=70.9

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEe--Cc----EEEEeecCCCCCCcccceE
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EE----LTRRTDARPGSDPRWDSMF  245 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~--g~----~~~tt~i~~~~nP~WnEtf  245 (713)
                      .|.|.|+|++|++|+..+..|.+                      ||||+|.+  +.    ..+|.+++++.||+|||+|
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F   70 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGS----------------------DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESF   70 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCC----------------------CeEEEEEEEcCCcccceEcCccccCCCCCccceeE
Confidence            38999999999999988876643                      99999998  21    2456667899999999999


Q ss_pred             EEEEecC---CceEEEEEEEeCCCCCccceeEEEEEEcc
Q 005132          246 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMK  281 (713)
Q Consensus       246 ~~~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~  281 (713)
                      .|.+...   ...|.|+|||+|.. .++++||.+.+...
T Consensus        71 ~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~~  108 (135)
T cd08410          71 SFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQY  108 (135)
T ss_pred             EEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcCc
Confidence            9998543   34799999999973 68999999986553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=1.8e-13  Score=141.62  Aligned_cols=104  Identities=31%  Similarity=0.506  Sum_probs=92.5

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC-
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF-  437 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~-  437 (713)
                      .|.|+|.+|+||.++|.+|.+||||++.+     +..++||+++ .++||+|||+|.|.....  ...|.|+|||+|+. 
T Consensus       181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs  260 (683)
T KOG0696|consen  181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS  260 (683)
T ss_pred             eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence            79999999999999999999999999999     3458999999 999999999999997664  77999999999998 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceecccce
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  471 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  471 (713)
                      +++++|..++.+++|+..+ .+.||.|-....|+
T Consensus       261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence            9999999999999997654 46899887655554

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.41  E-value=6.9e-13  Score=123.60  Aligned_cols=100  Identities=14%  Similarity=0.226  Sum_probs=83.4

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+ .+.+||||++++.  +   ..++|+++ ++.||+|||+|.|.+...   ...|.|+|||.+.
T Consensus        15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~   93 (137)
T cd08409          15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG   93 (137)
T ss_pred             CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence            47999999999999888 7889999999983  2   36789999 999999999999998642   5789999999987


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      . ++++||++.++......+...+.|..+-.
T Consensus        94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            7 89999999999766555555566766554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.41  E-value=9.9e-13  Score=122.20  Aligned_cols=99  Identities=21%  Similarity=0.393  Sum_probs=82.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||++++.  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~   93 (134)
T cd08403          14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR   93 (134)
T ss_pred             CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence            5899999999999999989999999999983  2   36789988 999999999999987543   3479999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      . ++++||.+.+++..  .+.....|+++-.
T Consensus        94 ~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~  122 (134)
T cd08403          94 VGHNELIGVCRVGPNA--DGQGREHWNEMLA  122 (134)
T ss_pred             CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence            8 79999999999873  3334456776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.39  E-value=1.9e-12  Score=117.94  Aligned_cols=95  Identities=21%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             EEEEeEcCCCCCCCCCCCcEEEEEECCe-------EEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecC----C
Q 005132          371 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F  437 (713)
Q Consensus       371 ~I~~a~~L~~~~~~g~~dpyv~v~l~~~-------~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~----~  437 (713)
                      -.++|++|+..+..|.+||||++++...       .++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            3479999999998899999999999443       5899999 99999999999998654 46789999999996    5


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeece
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                       ++++||++.+++.++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence             8999999999999999877777889884

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.39  E-value=3.3e-12  Score=116.82  Aligned_cols=98  Identities=15%  Similarity=0.302  Sum_probs=78.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CC--eEEeccCC-CCC-CCccceEEEEEEeCC--CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~--~~~kT~~~-~t~-nP~wne~f~f~v~~~--~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||++.+..+.+||||+|++   ++  .+.||+++ ++. ||+|||+|.|.+..+  ...+.|+|||++.
T Consensus        14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~   93 (135)
T cd08692          14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS   93 (135)
T ss_pred             CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC
Confidence            589999999999998766677899999988   22  37889999 884 699999999998764  4578889999987


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeec
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPL  464 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  464 (713)
                      . ++++||++.+..... .+...+.|...
T Consensus        94 ~~~n~~IG~v~lG~~~~-~~~~~~hW~~m  121 (135)
T cd08692          94 VRRKHFLGQVWISSDSS-SSEAVEQWKDT  121 (135)
T ss_pred             CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence            7 899999999999763 22223455544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.38  E-value=1.1e-12  Score=162.39  Aligned_cols=113  Identities=20%  Similarity=0.408  Sum_probs=102.7

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCCCCc
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE  440 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~~d~  440 (713)
                      .|.|.|+|++|+||.  +..|.+||||++.+|++ +.||+++ ++.||.|||.|+|.+.++  ...|.|+|||+|.++++
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence            489999999999997  44789999999999966 8899999 999999999999887775  47899999999999777


Q ss_pred             eeEEEEEeccccccCCeeeeeeecee--cccce---EEEEEEEE
Q 005132          441 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT  479 (713)
Q Consensus       441 ~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---I~l~l~~~  479 (713)
                      .||.+.|++.++..+...+.||+|.+  .+.|+   |.+.+.|.
T Consensus      2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            99999999999999999999999997  56899   99999996

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.7e-12  Score=139.35  Aligned_cols=115  Identities=30%  Similarity=0.523  Sum_probs=100.9

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-----  567 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~-----  567 (713)
                      -...+.++|++|++|.+.|..|.+||||.++++..+.+|+++...+||+|||.|.|.++  ...|.+.|||.|.-     
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999996  56799999999852     


Q ss_pred             ------CCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEEEe
Q 005132          568 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRKV  611 (713)
Q Consensus       568 ------~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~~~  611 (713)
                            ..|+|+|+..|.+..+..  ..+.||+|..     ..+|.|++.|...+
T Consensus       373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisvei  425 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEI  425 (1283)
T ss_pred             HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEE
Confidence                  358999999999888864  4689999963     45699999888854

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.34  E-value=4.3e-12  Score=107.34  Aligned_cols=79  Identities=35%  Similarity=0.572  Sum_probs=72.6

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCCCCCCCe
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNALLASSS  572 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~D~d~~~~d~~  572 (713)
                      |+|+|++|+||+..+..+..||||++.+++   ..++|+++.++.+|.|||+|.|++   ....|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988888999999999987   679999999999999999999996   35669999999999999999


Q ss_pred             eEEEE
Q 005132          573 IGDCV  577 (713)
Q Consensus       573 iG~~~  577 (713)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.34  E-value=1.8e-11  Score=112.71  Aligned_cols=109  Identities=27%  Similarity=0.442  Sum_probs=89.4

Q ss_pred             EEEEEEEEeEcCCCCC--CCCCCCcEEEEEE------CCeEEeccCC-CCC-CCccceEEEEEEeCC-CceEEEEEEEec
Q 005132          367 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE  435 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~--~~g~~dpyv~v~l------~~~~~kT~~~-~t~-nP~wne~f~f~v~~~-~~~l~i~V~d~~  435 (713)
                      .|+|+|++|++|+..+  ..+..||||++++      +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            7999999999998877  5788999999999      2457899998 665 999999999998765 467999999998


Q ss_pred             CCCCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEE
Q 005132          436 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  478 (713)
Q Consensus       436 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~  478 (713)
                      ..++++||.+.++++++..+   ..|++|.+.     ..|.|.+.++.
T Consensus        83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            77889999999999999554   367787642     24677777653

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.33  E-value=6.3e-12  Score=114.94  Aligned_cols=92  Identities=26%  Similarity=0.432  Sum_probs=78.7

Q ss_pred             eEEEEEEEccCccccc--cCC--CCCcEEEEEECC---eEEEEEeeeCCCC--CeeeeEEEEecC---------------
Q 005132          498 WIELVIVEARDLVAAD--LRG--TSDPYVKVQYGD---LKKRTKVIFKTLN--PQWHQTLEFPDD---------------  553 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d--~~g--~~DPyv~v~~~~---~~~kT~v~~~t~n--P~wne~~~f~v~---------------  553 (713)
                      .|+|.|.+|++++..+  ..|  .+||||++.+.+   .+++|.|+++++|  |.||+.|.|++.               
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            4899999999976543  355  499999999965   5789999999999  999999999852               


Q ss_pred             -----------CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCce
Q 005132          554 -----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA  589 (713)
Q Consensus       554 -----------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~  589 (713)
                                 ...|.++|||+|.+++|++||++.++|..+..+...
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~  127 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT  127 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence                       368999999999999999999999999988765443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.29  E-value=1.6e-11  Score=109.86  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=69.7

Q ss_pred             EEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC-c------EEEEeecCCCCCCcccceEEEEE
Q 005132          177 VRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-E------LTRRTDARPGSDPRWDSMFNMVL  249 (713)
Q Consensus       177 V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g-~------~~~tt~i~~~~nP~WnEtf~~~v  249 (713)
                      +-.++|++|+..+..|++                      ||||+|++. +      ..+|.+++++.||+|| +|.|.+
T Consensus         4 ~~~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~   60 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL   60 (110)
T ss_pred             EEEEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH
Confidence            345689999988876654                      999999983 2      3678888999999999 788875


Q ss_pred             ecC-----CceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132          250 HEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  285 (713)
Q Consensus       250 ~~~-----~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~  285 (713)
                      .+.     .+.|.|+|||+|. ..++++||++++++++|..
T Consensus        61 ~~l~~~~~~~~l~~~V~d~d~-~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          61 QKLCNGDYDRPIKIEVYDYDS-SGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             HHhcCCCcCCEEEEEEEEeCC-CCCCcEEEEEEEEHHHHhc
Confidence            432     5799999999997 4688999999999999984

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.27  E-value=1.3e-11  Score=139.63  Aligned_cols=249  Identities=23%  Similarity=0.322  Sum_probs=174.7

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeE--EeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCc
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~--~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~  440 (713)
                      -.++|.+++|-+|...|.+|.+|||+.+.+|++.  -++..+ +++||+|++-|++....+ ...+.++|||+|.. +|+
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~  692 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE  692 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence            4678999999999999999999999999999876  556667 999999999999997776 67889999999999 799


Q ss_pred             eeEEEEEeccccccCC-----ee---------eeeeeceec--------c---------cceEEEEEEEEeecC------
Q 005132          441 NMGSARVNLEGLVEGS-----VR---------DIWVPLEKV--------N---------TGELRLQIEATRVDD------  483 (713)
Q Consensus       441 ~lG~~~i~l~~l~~~~-----~~---------~~w~~L~~~--------~---------~G~I~l~l~~~~~~~------  483 (713)
                      .+|+..++|+.-....     ..         ..|..-.+.        .         .++. ..+.|....+      
T Consensus       693 ~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~  771 (1105)
T KOG1326|consen  693 KIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKE  771 (1105)
T ss_pred             hhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccc
Confidence            9999999988633111     11         223221100        0         0111 1222221100      


Q ss_pred             ------------------------------------------------------------CC-CCCCCCCCCCCceEEEE
Q 005132          484 ------------------------------------------------------------NE-GSRGQNIGSGNGWIELV  502 (713)
Q Consensus       484 ------------------------------------------------------------~~-~~~~~~~~~~~~~L~v~  502 (713)
                                                                                  .. +.......+....++|.
T Consensus       772 ~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrvi  851 (1105)
T KOG1326|consen  772 AKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVI  851 (1105)
T ss_pred             cCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEE
Confidence                                                                        00 00112234666889999


Q ss_pred             EEEccCccccccC----CCCCcEEEEEECC---eEEEEEeeeCCC--CCeeeeEEEEec---------------------
Q 005132          503 IVEARDLVAADLR----GTSDPYVKVQYGD---LKKRTKVIFKTL--NPQWHQTLEFPD---------------------  552 (713)
Q Consensus       503 v~~a~~L~~~d~~----g~~DPyv~v~~~~---~~~kT~v~~~t~--nP~wne~~~f~v---------------------  552 (713)
                      +..-.+....|.+    .++|-||+-.+.+   .+++|.++++++  .-.||-.|.|+.                     
T Consensus       852 iWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~d  931 (1105)
T KOG1326|consen  852 IWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLD  931 (1105)
T ss_pred             EeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccc
Confidence            9988888766543    3679999988754   478999999876  344665555542                     


Q ss_pred             -----CCCeEEEEEEECCCCCCCCeeEEEEEEceecC----------------------CCCceeeEEEcCCC------C
Q 005132          553 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLP----------------------PNQMADKWIPLQGV------R  599 (713)
Q Consensus       553 -----~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~----------------------~~~~~~~w~~L~~~------~  599 (713)
                           ....|.|+|||.|.|++|+|||..+++|++..                      .......|+|++..      -
T Consensus       932 ete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l 1011 (1105)
T KOG1326|consen  932 ETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVL 1011 (1105)
T ss_pred             cccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCccee
Confidence                 13569999999999999999999999988553                      22345678888632      2


Q ss_pred             CcEEEEEEEEEecCCcc
Q 005132          600 KGEIHVLITRKVPELDK  616 (713)
Q Consensus       600 ~G~i~~~l~~~~p~~~~  616 (713)
                      .|.+.+++++ +.+.++
T Consensus      1012 ~Gkvem~lei-lt~~EA 1027 (1105)
T KOG1326|consen 1012 AGKVEMSLEI-LTEKEA 1027 (1105)
T ss_pred             cceeeeehhh-hhhhhh
Confidence            4999999988 554443

>cd00030 C2 C2 domain

Probab=99.25  E-value=4e-11  Score=103.86  Aligned_cols=97  Identities=39%  Similarity=0.703  Sum_probs=87.8

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      |.|.|++|++|......+..||||++.+.+ ...+|++..++.||.|||.|.|++.   ...+.++|||++..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998877777899999999998 8899999999999999999999985   588999999999988889999


Q ss_pred             EEEEEceecC-CCCceeeEEEc
Q 005132          575 DCVVEYQRLP-PNQMADKWIPL  595 (713)
Q Consensus       575 ~~~i~L~~l~-~~~~~~~w~~L  595 (713)
                      ++.+++..+. .......|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999997 77778889875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.2e-11  Score=132.90  Aligned_cols=113  Identities=36%  Similarity=0.624  Sum_probs=98.5

Q ss_pred             CCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC----
Q 005132          363 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----  437 (713)
Q Consensus       363 ~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~----  437 (713)
                      +....+.++|.+|++|..+|..|.+||||.+.+++.+.+|+++ ..+||+|||.|.|.+.+....|++.|||.|.-    
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk  371 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK  371 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence            3446899999999999999999999999999999999999999 99999999999999999999999999998742    


Q ss_pred             --------CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEE
Q 005132          438 --------GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE  477 (713)
Q Consensus       438 --------~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~  477 (713)
                              .|+++|+..|.++.+.  ...+.||+|+.+.     +|-|++.+.
T Consensus       372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence                    6899999999998873  3457899998742     576665554

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.24  E-value=3.9e-11  Score=101.38  Aligned_cols=80  Identities=18%  Similarity=0.358  Sum_probs=66.2

Q ss_pred             EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc----EEEEeecCCCCCCcccceEEEEEe
Q 005132          175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNMVLH  250 (713)
Q Consensus       175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~----~~~tt~i~~~~nP~WnEtf~~~v~  250 (713)
                      |.|+|++|++|+..+..+.+                      ||||++.++.    ..+|+.++++.+|.|||+|.|.+.
T Consensus         1 L~v~I~~a~~L~~~~~~~~~----------------------~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~   58 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKP----------------------DPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD   58 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSB----------------------EEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCcccCCcc----------------------cccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence            78999999999987654433                      9999999942    366777889999999999999976


Q ss_pred             cC-CceEEEEEEEeCCCCCccceeEEEE
Q 005132          251 EE-TGTVRFNLYECIPGHVKYDYLTSCE  277 (713)
Q Consensus       251 ~~-~~~L~~~v~d~d~~~~~dd~lG~~~  277 (713)
                      .. .+.|.|+|||++.. .++++||+|.
T Consensus        59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~   85 (85)
T PF00168_consen   59 DPDLDSLSFEVWDKDSF-GKDELIGEVK   85 (85)
T ss_dssp             HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred             cccccceEEEEEECCCC-CCCCEEEEEC
Confidence            65 56799999999974 5688999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=1.4e-11  Score=124.42  Aligned_cols=213  Identities=16%  Similarity=0.212  Sum_probs=148.5

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCc------EEEEeecCCCCCCcccceE-
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDARPGSDPRWDSMF-  245 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~------~~~tt~i~~~~nP~WnEtf-  245 (713)
                      -.+..||..|++|+..+..|.                      .|||++..+++      -.|+.+..++.||.|||+- 
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~----------------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev  150 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGL----------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV  150 (362)
T ss_pred             hhcceeechhcccchhhhhhh----------------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence            468899999999999998774                      39999999952      2456667899999999765 


Q ss_pred             -EEEEecC--CceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccCCcce
Q 005132          246 -NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNS  322 (713)
Q Consensus       246 -~~~v~~~--~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (713)
                       .++..+.  ...+++.|.|.+. ....+++|+..+.++.|......         ....|+++.-. .+-.-..+...+
T Consensus       151 ~~~i~~~~~~~K~~Rk~vcdn~~-~~~~~sqGq~r~~lkKl~p~q~k---------~f~~cl~~~lp-~~rad~~~~E~r  219 (362)
T KOG1013|consen  151 YEGITDDDTHLKVLRKVVCDNDK-KTHNESQGQSRVSLKKLKPLQRK---------SFNICLEKSLP-SERADRDEDEER  219 (362)
T ss_pred             ecccccchhhhhhhheeeccCcc-cccccCcccchhhhhccChhhcc---------hhhhhhhccCC-cccccccchhhc
Confidence             4555554  4688999999887 46778999999988887642110         00011110000 000000001123


Q ss_pred             eeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----C
Q 005132          323 GELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----K  397 (713)
Q Consensus       323 G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~  397 (713)
                      |++.+++.+                             .+. ..-+.+++.+|..|...|.+|-+||||..++.     .
T Consensus       220 g~i~isl~~-----------------------------~s~-~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~  269 (362)
T KOG1013|consen  220 GAILISLAY-----------------------------SST-TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK  269 (362)
T ss_pred             cceeeeecc-----------------------------CcC-CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchh
Confidence            444333211                             111 12589999999999999999999999999983     2


Q ss_pred             eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCceeEEEEEe
Q 005132          398 IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVN  448 (713)
Q Consensus       398 ~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~lG~~~i~  448 (713)
                      -+.||.+. ++.+|.||+.|.|.+...   ...+.|.|||++.. ..+.+|-+...
T Consensus       270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG  325 (362)
T ss_pred             hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc
Confidence            37788888 999999999999997664   56899999999987 67777766554

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.17  E-value=2e-10  Score=99.77  Aligned_cols=94  Identities=35%  Similarity=0.513  Sum_probs=82.1

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCe---EEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~d~  571 (713)
                      .+.+.|++|++|......+..+|||++++.+.   ..+|+++.++.||.|||+|.|++.   ...|.|+|||++..+++.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            36899999999988876678899999999875   799999999999999999999983   588999999999888899


Q ss_pred             eeEEEEEEceecCCCCceee
Q 005132          572 SIGDCVVEYQRLPPNQMADK  591 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~~~~~~  591 (713)
                      ++|.+.+++.++..+.....
T Consensus        81 ~~G~~~~~l~~~~~~~~~~~  100 (101)
T smart00239       81 FIGQVTIPLSDLLLGGRHEK  100 (101)
T ss_pred             eeEEEEEEHHHcccCccccC
Confidence            99999999998876654433

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.10  E-value=6.3e-10  Score=96.22  Aligned_cols=97  Identities=34%  Similarity=0.703  Sum_probs=85.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC-CCceeE
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|.|++|++|......+..+|||.+.+.+ ..++|+++ ++.||.||+.|.|.+.. ....+.|+||+.+.. .+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998766677899999999987 89999999 99999999999999887 688999999999887 589999


Q ss_pred             EEEEeccccc-cCCeeeeeeec
Q 005132          444 SARVNLEGLV-EGSVRDIWVPL  464 (713)
Q Consensus       444 ~~~i~l~~l~-~~~~~~~w~~L  464 (713)
                      .+.+++.++. .......|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999998 66667778765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.03  E-value=1.6e-09  Score=94.03  Aligned_cols=91  Identities=30%  Similarity=0.559  Sum_probs=79.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCce
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  441 (713)
                      +.|.|++|++|......+..+|||++++..   ..++|+.+ ++.||.||+.|.|.+... ...|.|+|||.+.. .+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            689999999998776657899999999965   48999999 888999999999998877 89999999999877 6899


Q ss_pred             eEEEEEeccccccCCee
Q 005132          442 MGSARVNLEGLVEGSVR  458 (713)
Q Consensus       442 lG~~~i~l~~l~~~~~~  458 (713)
                      +|.+.+++.++..+...
T Consensus        82 ~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       82 IGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             eEEEEEEHHHcccCccc
Confidence            99999999998766543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.02  E-value=2.3e-09  Score=117.87  Aligned_cols=111  Identities=16%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CceEEEEEEEccCcccc-----ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecCC---CeEEEEEE
Q 005132          496 NGWIELVIVEARDLVAA-----DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVR  562 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~  562 (713)
                      ...|.|+|+.|++++..     +.....||||+|.+.+     .+++|.+..++.||+|||+|.|++..   ..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999987521     2234579999999955     35678888889999999999999853   45799999


Q ss_pred             ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          563 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       563 D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      |+|..++|+|+|++.+|+..+..+-   ++.+|.+..     .-.|++.+++
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            9999999999999999999998874   777885422     2455655554

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.00  E-value=1.4e-10  Score=126.86  Aligned_cols=102  Identities=27%  Similarity=0.447  Sum_probs=92.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-------EEEEEeeeCCCC
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLN  541 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~n  541 (713)
                      .|.+.+++.|.              .....|.|.|+.|+++.+.|.+|.|||||.|.+++.       .++|+|+++|+|
T Consensus       933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn  998 (1103)
T KOG1328|consen  933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN  998 (1103)
T ss_pred             CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence            58888888887              566889999999999999999999999999999873       469999999999


Q ss_pred             CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132          542 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLP  584 (713)
Q Consensus       542 P~wne~~~f~v~-------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~  584 (713)
                      |+|+|+|+|.|+       ...|.++|||||-.+.++|-|++.+.|.++.
T Consensus       999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen  999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence            999999999983       4579999999999999999999999998885

>PLN02270 phospholipase D alpha

Probab=98.97  E-value=3.8e-09  Score=120.71  Aligned_cols=119  Identities=18%  Similarity=0.346  Sum_probs=102.8

Q ss_pred             ccEEEEEEEEeEcCCCCC------------------CCCCCCcEEEEEECC-eEEeccCC-CC-CCCccceEEEEEEeCC
Q 005132          365 GRKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYGK-IVQRTRTA-HS-PNHVWNQKFELDEIGG  423 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~------------------~~g~~dpyv~v~l~~-~~~kT~~~-~t-~nP~wne~f~f~v~~~  423 (713)
                      .|.|.++|.+|++|+..+                  ..+.+||||.|.+++ .+.||+++ +. .||.|||+|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            478999999999997521                  135789999999965 57899999 64 6999999999999888


Q ss_pred             CceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeeceecc------cceEEEEEEEEeecC
Q 005132          424 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDD  483 (713)
Q Consensus       424 ~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~~~~  483 (713)
                      ...|.|.|+|.+.++..+||.+.+|.+++..+...+.|+++-+..      ..+|+++++|.++..
T Consensus        87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            999999999999998889999999999999999999999997532      248999999998754

>PLN02270 phospholipase D alpha

Probab=98.96  E-value=5.3e-09  Score=119.57  Aligned_cols=116  Identities=22%  Similarity=0.373  Sum_probs=97.7

Q ss_pred             CceEEEEEEEccCccccc------------------cCCCCCcEEEEEECCe-EEEEEeeeCC-CCCeeeeEEEEecC--
Q 005132          496 NGWIELVIVEARDLVAAD------------------LRGTSDPYVKVQYGDL-KKRTKVIFKT-LNPQWHQTLEFPDD--  553 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~~-~~kT~v~~~t-~nP~wne~~~f~v~--  553 (713)
                      -|.|.++|++|++|+..+                  ..+++||||.|.+++. ..||+++.+. .||.|||+|..++.  
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            488999999999998521                  2367899999999986 5699999885 69999999999994  


Q ss_pred             CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC------CCcEEEEEEEEEecC
Q 005132          554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE  613 (713)
Q Consensus       554 ~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~~~l~~~~p~  613 (713)
                      ...+.|.|.|.|.++.. +||.+.||..++..+...+.|+++.+.      ..-.|+++++| .|-
T Consensus        87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~  150 (808)
T PLN02270         87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY-FEV  150 (808)
T ss_pred             cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE-EEc
Confidence            67899999999988754 999999999999999999999999642      23589999999 553

>PLN02952 phosphoinositide phospholipase C

Probab=98.92  E-value=9.1e-09  Score=115.69  Aligned_cols=99  Identities=21%  Similarity=0.306  Sum_probs=82.2

Q ss_pred             CceEEEEEEEccCcccc------ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 005132          496 NGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV  561 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V  561 (713)
                      ...|.|.|+.|++++..      +.....||||+|.+-+     .+++|+++.++.||+|||+|.|++.   -..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987531      1123359999999954     4679999999999999999999874   24589999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      +|+|..++|+++|++.+|+..+..+.   +|++|.+
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99999999999999999999998884   6999963

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.88  E-value=1e-08  Score=93.89  Aligned_cols=90  Identities=22%  Similarity=0.276  Sum_probs=75.5

Q ss_pred             EEEEEEEeEcCCCC--CCCCC--CCcEEEEEEC---CeEEeccCC-CCCC--CccceEEEEEEeC---------------
Q 005132          368 INVTVVEGKDLMPK--DKSGK--CDPYVKLQYG---KIVQRTRTA-HSPN--HVWNQKFELDEIG---------------  422 (713)
Q Consensus       368 L~V~I~~a~~L~~~--~~~g~--~dpyv~v~l~---~~~~kT~~~-~t~n--P~wne~f~f~v~~---------------  422 (713)
                      |+|.|.+|++++..  +..|.  +||||++.+.   ...++|.+. ++.|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999996543  33564  9999999994   458999999 9998  9999999988654               


Q ss_pred             ------C---CceEEEEEEEecCC-CCceeEEEEEeccccccCCe
Q 005132          423 ------G---GECLMVKCYNEEIF-GDENMGSARVNLEGLVEGSV  457 (713)
Q Consensus       423 ------~---~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~  457 (713)
                            .   ...|.++|||+|.+ +|++||.+.++|..+..+..
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                  1   46899999999998 89999999999999876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.85  E-value=5.2e-10  Score=122.41  Aligned_cols=119  Identities=25%  Similarity=0.451  Sum_probs=99.5

Q ss_pred             CCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe-------------------------------EEEEEeeeC
Q 005132          490 QNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------------------------------KKRTKVIFK  538 (713)
Q Consensus       490 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------------------------------~~kT~v~~~  538 (713)
                      ....++...+.+.+.+|.||.++|.+|.||||+.+.+-..                               -+.|.|.++
T Consensus       107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~  186 (1103)
T KOG1328|consen  107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK  186 (1103)
T ss_pred             cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence            4456888889999999999999999999999999887210                               135889999


Q ss_pred             CCCCeeeeEEEEec---CCCeEEEEEEECCCC---------------------------------C---CCCeeEEEEEE
Q 005132          539 TLNPQWHQTLEFPD---DGSPLTLHVRDHNAL---------------------------------L---ASSSIGDCVVE  579 (713)
Q Consensus       539 t~nP~wne~~~f~v---~~~~l~i~V~D~d~~---------------------------------~---~d~~iG~~~i~  579 (713)
                      |+||.|+|.|.|.+   ....+++.+||||.-                                 +   .|+|+|++.||
T Consensus       187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip  266 (1103)
T KOG1328|consen  187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP  266 (1103)
T ss_pred             cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence            99999999999997   478999999999842                                 1   28999999999


Q ss_pred             ceecCCCCceeeEEEcCC-----CCCcEEEEEEEE
Q 005132          580 YQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  609 (713)
Q Consensus       580 L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~  609 (713)
                      |.++... ..++||.|+.     +..|.+++.+-+
T Consensus       267 l~EiP~~-Gld~WFkLepRS~~S~VqG~~~LklwL  300 (1103)
T KOG1328|consen  267 LAEIPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWL  300 (1103)
T ss_pred             hhcCCcc-hHHHHhccCcccccccccceEEEEEEE
Confidence            9999764 5789999974     346999998866

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.85  E-value=3.2e-09  Score=121.74  Aligned_cols=114  Identities=25%  Similarity=0.386  Sum_probs=102.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|+++++|.                .+.|.|.|..|++|+-...+...||||+.++..     .+.||+++++|+||.
T Consensus      1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred             CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence            47999999986                699999999999998777777899999999965     367999999999999


Q ss_pred             eeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          544 WHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       544 wne~~~f~------v~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |||.+.+.      .....|.++||..+.+..+.++|.+.|+|.+++..+....||+|...
T Consensus      1576 fnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1576 FNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             hhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            99999987      34689999999999999999999999999999888888899999753

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.85  E-value=1.8e-08  Score=113.19  Aligned_cols=112  Identities=15%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             CCceEEEEEEEccCcccc------ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEE
Q 005132          495 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLH  560 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~  560 (713)
                      ....|.|.|+.|++++..      +.....||||+|.+-+     .+++|++..++.||+|||+|.|++.   =..|+|+
T Consensus       467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence            346799999999987421      2233569999999943     3578999999999999999999974   3678999


Q ss_pred             EEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          561 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       561 V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      |+|+|..++|+|+|+..+|+..|..+-   +..+|.+..     .-.|.+.|.+
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            999999899999999999999998873   566775422     2456666654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.83  E-value=2.5e-08  Score=108.80  Aligned_cols=173  Identities=23%  Similarity=0.280  Sum_probs=131.8

Q ss_pred             eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-----CCceeEEEEEeccccccCCeeeeeeecee---c
Q 005132          398 IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLEK---V  467 (713)
Q Consensus       398 ~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~  467 (713)
                      +..+|.++ +..||.|-+.|....... .+.++|.++|-+..     ..+++|++...+..+........-+.++.   .
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~  120 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA  120 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence            35688888 999999999998775554 78899999987654     57899999999999886654433333332   3


Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC--C----eEEEEEeeeCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLN  541 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~n  541 (713)
                      .+|.|.+.++-.              ...........+|++|..+|..+.+|||..++--  .    ..++|.++++|+|
T Consensus       121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~  186 (529)
T KOG1327|consen  121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN  186 (529)
T ss_pred             CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence            578888887543              1222334445569999999999999999988763  2    3579999999999


Q ss_pred             CeeeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEceecC
Q 005132          542 PQWHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP  584 (713)
Q Consensus       542 P~wne~~~f~------v~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~  584 (713)
                      |.|-+...=.      ..+..+.+++||++..+++++||++..++..+.
T Consensus       187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            9998732211      136889999999999999999999998887774

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.83  E-value=1.1e-08  Score=109.33  Aligned_cols=113  Identities=28%  Similarity=0.571  Sum_probs=98.6

Q ss_pred             ceEEEEEEEccCcccccc-CCCCCcEEEEEECCeEEEEEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCCCCC
Q 005132          497 GWIELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNALLA  569 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~D~d~~~~  569 (713)
                      |.|-|.|..||+||.+|. ....|.||.+.+++..+||.|..+++||.|| +-|.|+++     ...|.|.++|||.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            678899999999999985 4577999999999999999999999999999 68899984     6789999999999999


Q ss_pred             CCeeEEEEEEceecC----------CCCceeeEEEcCCC---CCcEEEEEEEE
Q 005132          570 SSSIGDCVVEYQRLP----------PNQMADKWIPLQGV---RKGEIHVLITR  609 (713)
Q Consensus       570 d~~iG~~~i~L~~l~----------~~~~~~~w~~L~~~---~~G~i~~~l~~  609 (713)
                      ++-||.+.|+++.+.          .+.....|+++...   -+|||.+-+..
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            999999999988763          23457899999753   47999988776

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.80  E-value=4e-08  Score=110.19  Aligned_cols=111  Identities=19%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             CceEEEEEEEccCcc----c--cccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 005132          496 NGWIELVIVEARDLV----A--ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV  561 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V  561 (713)
                      ...|+|.|+.|++++    .  .+.....||||+|.+.+     .+++|+++.++.||+|||+|.|.+.   =..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    1  12234579999999953     4679999999999999999999874   35689999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      +|+|..++|+|+|+..+|+..|..|-   +..+|.+..     .-.|.+.+.+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence            99999899999999999999998773   566775422     2455555544

>PLN02223 phosphoinositide phospholipase C

Probab=98.78  E-value=5.1e-08  Score=107.47  Aligned_cols=110  Identities=18%  Similarity=0.268  Sum_probs=85.5

Q ss_pred             cEEEEEEEEeEcCCC-----CCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEE
Q 005132          366 RKINVTVVEGKDLMP-----KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYN  433 (713)
Q Consensus       366 g~L~V~I~~a~~L~~-----~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d  433 (713)
                      ..|.|+|+.|+++..     .+....+||||+|.+.     ...++|.+. ++.||+|||+|+|.+..+ -..|+|+|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            479999999998741     1223568999999993     336778777 899999999999998876 5679999999


Q ss_pred             ecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132          434 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  478 (713)
Q Consensus       434 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~  478 (713)
                      +|.. .++++|+..+|+..+..+-   ++++|.+..     .-.|.+.++|
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            9987 8999999999999998876   556665421     3455555554

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.74  E-value=4.4e-08  Score=84.28  Aligned_cols=88  Identities=16%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             EEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcEEEEeecCCCCCCcccceEEEEEecCCc
Q 005132          175 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETG  254 (713)
Q Consensus       175 L~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~~~tt~i~~~~nP~WnEtf~~~v~~~~~  254 (713)
                      |.|+|+.|+|+...+...                  |.++ +||||.+.++...+.++. .+.||+|||+|.|.| +...
T Consensus         1 L~I~V~~~RdvdH~~~~~------------------~~~~-~etyV~IKved~~kaRTr-~srnd~WnE~F~i~V-dk~n   59 (109)
T cd08689           1 LTITITSARDVDHIASPR------------------FSKR-PETYVSIKVEDVERARTK-PSRNDRWNEDFEIPV-EKNN   59 (109)
T ss_pred             CEEEEEEEecCccccchh------------------hccC-CCcEEEEEECCEEEEecc-CCCCCcccceEEEEe-cCCc
Confidence            579999999997665211                  1111 499999999865332222 248999999999999 4578


Q ss_pred             eEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132          255 TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  285 (713)
Q Consensus       255 ~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~  285 (713)
                      .+.|.|||...  ...--+|...+.+.+|..
T Consensus        60 Eiel~VyDk~~--~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          60 EEEVIVYDKGG--DQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             EEEEEEEeCCC--CeecceeeehhhHHHHHH
Confidence            89999999874  255589999999999885

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=98.73  E-value=1e-07  Score=106.68  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             CceEEEEEEEccCccc---c---ccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCee-eeEEEEecC---CCeEEEE
Q 005132          496 NGWIELVIVEARDLVA---A---DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW-HQTLEFPDD---GSPLTLH  560 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~---~---d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~~~f~v~---~~~l~i~  560 (713)
                      ...|+|.|+.|++|+.   .   +.....||||+|.+.+     .+++|+++.++.||+| ||+|.|++.   =..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998731   1   1223479999999943     3679999999999999 999999974   3568999


Q ss_pred             EEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          561 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       561 V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      |+|+|..+.|+++|++.+|++.|..|   -+.++|.+.     ....|.+.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~  560 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFAL  560 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEE
Confidence            99999989999999999999999877   356677542     23678888877

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.71  E-value=4.8e-08  Score=109.59  Aligned_cols=110  Identities=21%  Similarity=0.317  Sum_probs=85.4

Q ss_pred             ceEEEEEEEccCccccc----cCCCCCcEEEEEECC-----eEEEEE-eeeCCCCCeeeeEEEEecC---CCeEEEEEEE
Q 005132          497 GWIELVIVEARDLVAAD----LRGTSDPYVKVQYGD-----LKKRTK-VIFKTLNPQWHQTLEFPDD---GSPLTLHVRD  563 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d----~~g~~DPyv~v~~~~-----~~~kT~-v~~~t~nP~wne~~~f~v~---~~~l~i~V~D  563 (713)
                      ..|.|.|+.|++++..-    .+..+||||.|.+.+     ...+|+ +..++.||.|+|+|+|++.   =.-|+|.|+|
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d  695 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD  695 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence            37999999999775432    235689999999965     367999 4557899999999999985   3568999999


Q ss_pred             CCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          564 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      +|..++|+|+|+.++|+..|..|-   +-++|.+.     ..-.|.+.+.+
T Consensus       696 ~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~  743 (746)
T KOG0169|consen  696 YDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAI  743 (746)
T ss_pred             cCCCCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEE
Confidence            999999999999999999998774   45566543     12445555544

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=8.3e-08  Score=82.60  Aligned_cols=84  Identities=21%  Similarity=0.324  Sum_probs=71.7

Q ss_pred             EEEEEEEeEcCCCCC---CCCCCCcEEEEEECCe-EEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeE
Q 005132          368 INVTVVEGKDLMPKD---KSGKCDPYVKLQYGKI-VQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMG  443 (713)
Q Consensus       368 L~V~I~~a~~L~~~~---~~g~~dpyv~v~l~~~-~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG  443 (713)
                      |.|+|+.|+|+...+   ..+.++|||.+++++. +.||++  +.||.|||+|.|.+ +....+.+.|||...-....+|
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~   77 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVG   77 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeeccee
Confidence            579999999997766   5788999999999876 888886  58999999999998 5789999999998665566788


Q ss_pred             EEEEecccccc
Q 005132          444 SARVNLEGLVE  454 (713)
Q Consensus       444 ~~~i~l~~l~~  454 (713)
                      -.-+.+.+|.+
T Consensus        78 llW~~~sdi~E   88 (109)
T cd08689          78 LLWLRLSDIAE   88 (109)
T ss_pred             eehhhHHHHHH
Confidence            88888888764

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02952 phosphoinositide phospholipase C

Probab=98.61  E-value=4.6e-07  Score=102.16  Aligned_cols=98  Identities=20%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             cEEEEEEEEeEcCCCC------CCCCCCCcEEEEEE-C----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132          366 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY  432 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~------~~~g~~dpyv~v~l-~----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~  432 (713)
                      ..|.|+|+.|.+++..      +....+||||+|.+ |    ....+|+++ ++.||+||++|+|.+..+ -..++|+|+
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~  549 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR  549 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence            4799999999987421      12234699999998 2    457899999 889999999999998776 568999999


Q ss_pred             EecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      |+|.. .++++|++.+|+..|..+.   +|++|.+
T Consensus       550 D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        550 EYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             ecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99887 7999999999999998876   5888864

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.56  E-value=5.8e-07  Score=101.15  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             cEEEEEEEEeEcCCCC------CCCCCCCcEEEEEE-C----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132          366 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY  432 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~------~~~g~~dpyv~v~l-~----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~  432 (713)
                      .+|.|+|+.+.++...      +....+||||+|.+ |    ....+|++. ++.||.|||+|+|.+..+ -..|+|+|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            4799999999987421      22345799999999 2    346789988 999999999999998776 578999999


Q ss_pred             EecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132          433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  478 (713)
Q Consensus       433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~  478 (713)
                      |+|.. +|+++|+..+|+..|..+-   +.++|.+..     .-.|.+.+.+
T Consensus       549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             ECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            99986 8999999999999998876   345665422     2345555543

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.51  E-value=2.8e-07  Score=102.57  Aligned_cols=110  Identities=19%  Similarity=0.232  Sum_probs=88.2

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECC-----e-EEEEEeeeCCCCCeee-eEEEEecCC---CeEEEEEEECC
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----L-KKRTKVIFKTLNPQWH-QTLEFPDDG---SPLTLHVRDHN  565 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~-~~kT~v~~~t~nP~wn-e~~~f~v~~---~~l~i~V~D~d  565 (713)
                      .-.|.|.|+.||.|+.. ..|...|||.|.+.+     . .++|.|+.+.+||+|| |.|+|.+.+   ..|++.|+|.|
T Consensus      1064 p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            36789999999999954 455678999999954     2 3455667789999999 999999965   45899999999


Q ss_pred             CCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCC-----cEEEEEEEE
Q 005132          566 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK-----GEIHVLITR  609 (713)
Q Consensus       566 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~-----G~i~~~l~~  609 (713)
                      .++...|||+++.|+..+..+   -+-.+|++..+     ..|++.+..
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m 1188 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEM 1188 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEe
Confidence            999999999999999998766   46678876654     555666665

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.50  E-value=1.2e-06  Score=98.44  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             cEEEEEEEEeEcCC----C--CCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEE
Q 005132          366 RKINVTVVEGKDLM----P--KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY  432 (713)
Q Consensus       366 g~L~V~I~~a~~L~----~--~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~  432 (713)
                      ..|.|+|+.+.++.    .  .+....+||||+|.+.     ....+|+++ ++.||.|||+|+|.+..+ -..|+|.|+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~  531 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH  531 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence            47999999998752    1  1223468999999992     347899999 889999999999998776 578999999


Q ss_pred             EecCC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          433 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       433 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      |+|.. .++++|+..+|+..|..+-   +.++|.+
T Consensus       532 d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~  563 (581)
T PLN02222        532 EYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHS  563 (581)
T ss_pred             ECCCCCCCcEEEEEEcchhhhhCcc---ceEEccC
Confidence            99876 7999999999999998775   3456654

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.48  E-value=4.9e-07  Score=97.07  Aligned_cols=113  Identities=19%  Similarity=0.429  Sum_probs=95.2

Q ss_pred             cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEECCeEEeccCC-CCCCCccc-eEEEEEEeCC---CceEEEEEEEecCC-C
Q 005132          366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIGG---GECLMVKCYNEEIF-G  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~~~~~kT~~~-~t~nP~wn-e~f~f~v~~~---~~~l~i~V~d~~~~-~  438 (713)
                      |.|.|+|..||+|+.+|.. ...|.||++++++..+||.+. +++||.|| +.|.|.+.+.   .+.|+|.+.|+|.. .
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            6899999999999988854 578999999999999999999 99999998 6688887663   67999999999998 8


Q ss_pred             CceeEEEEEeccccccC----------Ceeeeeeeceecc---cceEEEEEEE
Q 005132          439 DENMGSARVNLEGLVEG----------SVRDIWVPLEKVN---TGELRLQIEA  478 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~----------~~~~~w~~L~~~~---~G~I~l~l~~  478 (713)
                      ++-||.+.|+++.+...          .....|+++.+.-   +|+|.+-+..
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            99999999999887621          2357899987743   6888776653

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.47  E-value=1.2e-06  Score=95.95  Aligned_cols=180  Identities=21%  Similarity=0.319  Sum_probs=125.3

Q ss_pred             cEEEEeecCCCCCCcccceEEEEEecC-CceEEEEEEEeCCC---CCccceeEEEEEEcccccCCccceeecCCCCcccc
Q 005132          226 ELTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA  301 (713)
Q Consensus       226 ~~~~tt~i~~~~nP~WnEtf~~~v~~~-~~~L~~~v~d~d~~---~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~  301 (713)
                      +..||..+.+.+||.|-++|.+..+-. .|.|++.+||.+..   ....|++|+++..+..+......           .
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----------~  109 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----------T  109 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----------h
Confidence            456888899999999999998876544 79999999998863   13567999999999998854321           0


Q ss_pred             ccccccCCeeeeeeccCCcceeeEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCC
Q 005132          302 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPK  381 (713)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~  381 (713)
                      ..+.++..        ....+|.+.+..  +.     ..+                .       .....-..+|++|..+
T Consensus       110 ~~l~~~~~--------~~~~~g~iti~a--ee-----~~~----------------~-------~~~~~~~~~~~~ld~k  151 (529)
T KOG1327|consen  110 GPLLLKPG--------KNAGSGTITISA--EE-----DES----------------D-------NDVVQFSFRAKNLDPK  151 (529)
T ss_pred             hhhhcccC--------ccCCcccEEEEe--ec-----ccc----------------c-------CceeeeeeeeeecCcc
Confidence            00000000        111235554332  11     000                0       0223334568999999


Q ss_pred             CCCCCCCcEEEEEE--C----CeEEeccCC-CCCCCccceEEE----EEEeCCCceEEEEEEEecCC-CCceeEEEEEec
Q 005132          382 DKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNL  449 (713)
Q Consensus       382 ~~~g~~dpyv~v~l--~----~~~~kT~~~-~t~nP~wne~f~----f~v~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l  449 (713)
                      +..+++|||..++-  +    ...++|.++ ++++|.|.+...    +...+....+.+.|||++.. +++++|.+..++
T Consensus       152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~  231 (529)
T KOG1327|consen  152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL  231 (529)
T ss_pred             cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence            99999999999876  2    237899999 999999976542    22233467899999999988 679999999999


Q ss_pred             ccccc
Q 005132          450 EGLVE  454 (713)
Q Consensus       450 ~~l~~  454 (713)
                      .++..
T Consensus       232 ~~~~~  236 (529)
T KOG1327|consen  232 SELQE  236 (529)
T ss_pred             HHhcc
Confidence            98864

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.44  E-value=8e-07  Score=99.97  Aligned_cols=110  Identities=18%  Similarity=0.340  Sum_probs=86.4

Q ss_pred             EEEEEEEEeEcCCCC-C---CCCCCCcEEEEEEC-----CeEEeccCC--CCCCCccceEEEEEEeCC-CceEEEEEEEe
Q 005132          367 KINVTVVEGKDLMPK-D---KSGKCDPYVKLQYG-----KIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNE  434 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~-~---~~g~~dpyv~v~l~-----~~~~kT~~~--~t~nP~wne~f~f~v~~~-~~~l~i~V~d~  434 (713)
                      +|.|+|+.+.++... +   .....||||.|.+-     ....+|+++  ++-||.|+|+|+|.+..+ -..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            799999999976432 2   23568999999983     347899966  899999999999999887 57899999999


Q ss_pred             cCC-CCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132          435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  479 (713)
Q Consensus       435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~  479 (713)
                      |.. +|+++|+..+|+..|..+-.+   ++|.+.     ....|.+.+.+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence            998 799999999999999887644   555542     134555555543

>PLN02228 Phosphoinositide phospholipase C

Probab=98.43  E-value=2.2e-06  Score=96.20  Aligned_cols=111  Identities=20%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             cEEEEEEEEeEcCCC---C---CCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCcc-ceEEEEEEeCC-CceEEEEE
Q 005132          366 RKINVTVVEGKDLMP---K---DKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVKC  431 (713)
Q Consensus       366 g~L~V~I~~a~~L~~---~---~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~w-ne~f~f~v~~~-~~~l~i~V  431 (713)
                      ..|.|+|+.|++|+.   .   +....+||||+|.+     +...++|+++ ++.||.| |++|+|.+..+ -..|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   1   12345899999998     2346899999 8899999 99999998776 57899999


Q ss_pred             EEecCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEEE
Q 005132          432 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  479 (713)
Q Consensus       432 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~  479 (713)
                      +|++.. .++++|++.+|+..|..+-   +.++|.+..     ...|.+.+.+.
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~  561 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD  561 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence            999876 8999999999999997765   445665422     34566666554

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.42  E-value=1.1e-06  Score=97.93  Aligned_cols=116  Identities=22%  Similarity=0.320  Sum_probs=91.3

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC--CCCCCccc-eEEEEEEeCC-CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWN-QKFELDEIGG-GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~--~t~nP~wn-e~f~f~v~~~-~~~l~i~V~d~~~  436 (713)
                      -.|.|.|+.||.|+.. ..|...|||+|.+     +..+++|.++  ++.||+|| ++|+|.+..+ -..|+|.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            4789999999999854 3567789999998     2346666666  99999999 9999999987 6789999999999


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeeceeccc-----ceEEEEEEEEeecCCC
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNT-----GELRLQIEATRVDDNE  485 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~I~l~l~~~~~~~~~  485 (713)
                      + ...+||++..|+..+..+-   +-++|.+.-+     ..+.+.++..++..++
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCcc
Confidence            9 5569999999999987654   4466665432     4567777777665543

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=98.21  E-value=5.9e-06  Score=70.96  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=55.2

Q ss_pred             hhhHHHHHHHhh-cCCcccceEEEeeeecCCCCCceeeeeeEeCCCCCEEEEEEeEEeccCCceEEEEEe
Q 005132            2 YLHLLLKKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAK   70 (713)
Q Consensus         2 ~~~~~ve~~l~~-~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~l~~~   70 (713)
                      ++++.++..|.. .+|+||++|++++++||+.||.|.++++.....+++..+|++++|.+ +....+..+
T Consensus        20 ~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G-~~~l~l~t~   88 (91)
T PF10296_consen   20 KIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG-GFSLTLETK   88 (91)
T ss_pred             HHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC-CeEEEEEEE
Confidence            456677777876 46999999999999999999999999987656667789999999997 444444444

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.21  E-value=1.6e-06  Score=76.88  Aligned_cols=97  Identities=21%  Similarity=0.383  Sum_probs=75.8

Q ss_pred             EEEEEEEccCcccccc-------------CCCCCcEEEEEE----CCeEEEEEeeeCCCCCeeeeEEEEecC--------
Q 005132          499 IELVIVEARDLVAADL-------------RGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFPDD--------  553 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~v~~~t~nP~wne~~~f~v~--------  553 (713)
                      |.|.|++|.+|.++..             .--.++||++.+    .++..+|+++.++.+|.|+-+++|+++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4678899999874321             112489999996    346789999999999999999999972        


Q ss_pred             ----------CCeEEEEEEECCCC----------CCCCeeEEEEEEceecC-CCCceeeEEEc
Q 005132          554 ----------GSPLTLHVRDHNAL----------LASSSIGDCVVEYQRLP-PNQMADKWIPL  595 (713)
Q Consensus       554 ----------~~~l~i~V~D~d~~----------~~d~~iG~~~i~L~~l~-~~~~~~~w~~L  595 (713)
                                ...+.++||+.+.-          .+|-.||.+.||+.+|. .......||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                      46799999987642          35678999999999985 44568999985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02352 phospholipase D epsilon

Probab=98.20  E-value=1.1e-05  Score=92.85  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=89.8

Q ss_pred             ccEEEEEEEEeEcCCCC----C-CCCCCCcEEEEEECC-eEEeccCCCCCCCccceEEEEEEeCCC-ceEEEEEEEecCC
Q 005132          365 GRKINVTVVEGKDLMPK----D-KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIF  437 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~----~-~~g~~dpyv~v~l~~-~~~kT~~~~t~nP~wne~f~f~v~~~~-~~l~i~V~d~~~~  437 (713)
                      .|.|.++|.+|+-+...    . .....+|||.|.+++ .+.||  .+..||.|+|+|.+.+.... ..|.|.|+|    
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKT----   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence            47999999999854221    0 111239999999965 47788  44459999999999988876 789999998    


Q ss_pred             CCceeEEEEEeccccccCCe-eeeeeeceecc----c-ceEEEEEEEEeecCC
Q 005132          438 GDENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN  484 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~I~l~l~~~~~~~~  484 (713)
                      +..+||.+.+|.+++..+.. .+.|+++-+..    . .+|+++++|.++...
T Consensus        83 ~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence            36799999999999998866 89999997532    3 489999999997543

>PLN02352 phospholipase D epsilon

Probab=98.13  E-value=1.3e-05  Score=92.02  Aligned_cols=111  Identities=17%  Similarity=0.269  Sum_probs=83.5

Q ss_pred             CCceEEEEEEEccCcccc----c-cCCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC--C-CeEEEEEEECC
Q 005132          495 GNGWIELVIVEARDLVAA----D-LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLHVRDHN  565 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~----d-~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~-~~l~i~V~D~d  565 (713)
                      --|.|.++|.+|+-+...    + .....||||.|.+++.+ .||   .+.-||+|||+|..++.  . ..+.|.|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            347888888888733221    1 11223999999998864 578   55669999999999994  2 469999998  


Q ss_pred             CCCCCCeeEEEEEEceecCCCCc-eeeEEEcCCCC----C-cEEEEEEEEEecCC
Q 005132          566 ALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQGVR----K-GEIHVLITRKVPEL  614 (713)
Q Consensus       566 ~~~~d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~i~~~l~~~~p~~  614 (713)
                         +..+||.+.||..++..+.. .+.|+++.+..    . ..|+++++| .|..
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~  133 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWF-RPAE  133 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEE-EEhh
Confidence               25699999999999988765 99999996421    3 489999999 5543

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.12  E-value=3.5e-06  Score=97.57  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEe
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNE  434 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~  434 (713)
                      .|+|.|-|..|++|+-......+||||+.|+-     ..+.||+++ +|.||.|||..++....    ....|++.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            36999999999999777767889999999992     237899999 99999999999988433    257999999999


Q ss_pred             cCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      +.. .+.++|.+.++|.++....+...||+|...
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            888 889999999999999877777799999864

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=98.03  E-value=0.00053  Score=72.80  Aligned_cols=211  Identities=15%  Similarity=0.173  Sum_probs=153.3

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC--------CCceEEEEEEEecCC-
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF-  437 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~--------~~~~l~i~V~d~~~~-  437 (713)
                      +.+.|.+|++.+...   .-.-.+...++++...|..+ ++..|.||....+.+..        ....|+++||.-+.. 
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            678999999998652   34567888999999999999 99999999999888533        356899999998833 


Q ss_pred             -CCceeEEEEEecccc---ccC--Ceeeeeeeceec------ccceEEEEEEEEeecCC-----C-----C-CC------
Q 005132          438 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-----E-----G-SR------  488 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~-----~-----~-~~------  488 (713)
                       ..+.+|.+.++|+..   ..+  .....||+|-+.      .+-+|.+.+....-...     .     . .+      
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~  158 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP  158 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence             788999999999998   544  457899999775      24677777765532210     0     0 00      


Q ss_pred             -------------------------CCCCCCCCceEEEEEEEccCccccc------cCCCCCcEEEEEECCeEEEEEeee
Q 005132          489 -------------------------GQNIGSGNGWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIF  537 (713)
Q Consensus       489 -------------------------~~~~~~~~~~L~v~v~~a~~L~~~d------~~g~~DPyv~v~~~~~~~kT~v~~  537 (713)
                                               ..........|.|++..|.||...-      ..+...-|...++-+....|....
T Consensus       159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~  238 (340)
T PF12416_consen  159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK  238 (340)
T ss_pred             ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence                                     0011234577889999999986541      123456677777877788888888


Q ss_pred             CCCCCeee-eEEE-Eec------------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCC
Q 005132          538 KTLNPQWH-QTLE-FPD------------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN  586 (713)
Q Consensus       538 ~t~nP~wn-e~~~-f~v------------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~  586 (713)
                      ...+|.|. |.-. +.+            ....|.|.++..     +..||.+.|++..+.+.
T Consensus       239 ~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  239 SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence            88899874 3333 554            246788888764     45899999999988543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.87  E-value=1.7e-05  Score=70.56  Aligned_cols=97  Identities=20%  Similarity=0.328  Sum_probs=74.5

Q ss_pred             EEEEEEEeEcCCCCC-------C------CCCCCcEEEEEE----CCeEEeccCC-CCCCCccceEEEEEEe--------
Q 005132          368 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEI--------  421 (713)
Q Consensus       368 L~V~I~~a~~L~~~~-------~------~g~~dpyv~v~l----~~~~~kT~~~-~t~nP~wne~f~f~v~--------  421 (713)
                      |.|.|++|.+|+...       .      .--.|+||++.+    +++..+|+++ ++-.|.|+..++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888888885321       0      113689999986    5778999999 9999999999999965        


Q ss_pred             C--------CCceEEEEEEEecCC-----------CCceeEEEEEeccccccCC-eeeeeeec
Q 005132          422 G--------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVEGS-VRDIWVPL  464 (713)
Q Consensus       422 ~--------~~~~l~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~-~~~~w~~L  464 (713)
                      .        ....+.|+||+....           +|-.||.+.||+.+|.... ....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        135899999986542           5678999999999988544 57889975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=1.3e-05  Score=83.14  Aligned_cols=105  Identities=31%  Similarity=0.380  Sum_probs=89.0

Q ss_pred             CCCCceEEEEEEEccCcccccc-CCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEec--CCCeEEEEEE-E
Q 005132          493 GSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVR-D  563 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~-D  563 (713)
                      -...|.+.|.|++|++|..+.. ...++|||+|++..     .+.+|+...+|++|.|.+.+.|.-  ....|.+.|| |
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD  344 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence            3667999999999999976643 33789999999954     367999999999999999988875  5788999999 7


Q ss_pred             CCCCCCCCeeEEEEEEceecCCCC-ceeeEEEcCC
Q 005132          564 HNALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQG  597 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~  597 (713)
                      +.+...+.|+|.+.+-+.++.... +...||+|-+
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            777778899999999999998766 7899999975

>PLN02964 phosphatidylserine decarboxylase

Probab=97.73  E-value=4.3e-05  Score=87.32  Aligned_cols=85  Identities=15%  Similarity=0.337  Sum_probs=69.4

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCc-EEEEEeC-cEEEEeecCCCCCCcccceEEEEE
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTT-FVEIELE-ELTRRTDARPGSDPRWDSMFNMVL  249 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dp-yv~v~~g-~~~~tt~i~~~~nP~WnEtf~~~v  249 (713)
                      .|++.+++++|+    +++.                         || |+.+.+| +..||...++|.||+|||...|+|
T Consensus        53 ~~~~~~~~~~~~----~~~~-------------------------~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~  103 (644)
T PLN02964         53 SGIALLTLVGAE----MKFK-------------------------DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLL  103 (644)
T ss_pred             cCeEEEEeehhh----hccC-------------------------CcEEEEEEecceeeeeccccccCCcccchhhceEe
Confidence            499999999998    3331                         44 5566677 567888889999999999999999


Q ss_pred             ecC-CceEEEEEEEeCCCCCccceeEEEEEEcccccCC
Q 005132          250 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  286 (713)
Q Consensus       250 ~~~-~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~  286 (713)
                      ... ....+|.|||.++ +.+++++|.|+++|.++...
T Consensus       104 ~~~~~~~~~~~~~~~~~-~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        104 EKNGPHLARISVFETNR-LSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             ccCCcceEEEEEEecCC-CCHHHhhhheeecHhhccHH
Confidence            776 4557999999998 47999999999999887754

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.25  E-value=0.00027  Score=58.48  Aligned_cols=92  Identities=18%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             EEEEEEeEcCCCC-CCCCCCCcEEEEE--ECC-eEEeccCC-CCCCCccceEEEEEEeC---CCceEEEEEEEecCCCCc
Q 005132          369 NVTVVEGKDLMPK-DKSGKCDPYVKLQ--YGK-IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE  440 (713)
Q Consensus       369 ~V~I~~a~~L~~~-~~~g~~dpyv~v~--l~~-~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~~d~  440 (713)
                      .|++.+|+||.-- .-...+.-|++-.  +.+ ..+||... +..||.|.|+|.|.+..   +...|.|.|+. ...+..
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe   80 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR   80 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence            5889999999432 2233455666533  344 47899999 99999999999999755   36788999988 233789


Q ss_pred             eeEEEEEeccccccCCeeeeee
Q 005132          441 NMGSARVNLEGLVEGSVRDIWV  462 (713)
Q Consensus       441 ~lG~~~i~l~~l~~~~~~~~w~  462 (713)
                      .||.+.+.++++-..+ ...|.
T Consensus        81 ~iG~~sL~l~s~geeE-~~HW~  101 (103)
T cd08684          81 TIGECSLSLRTLSTQE-TDHWL  101 (103)
T ss_pred             eeeEEEeecccCCHHH-hhhhh
Confidence            9999999999874332 33454

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02964 phosphatidylserine decarboxylase

Probab=97.19  E-value=0.00048  Score=78.91  Aligned_cols=87  Identities=20%  Similarity=0.293  Sum_probs=72.7

Q ss_pred             CCCceEEEEEEEccCccccccCCCCCcEEE-EEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 005132          494 SGNGWIELVIVEARDLVAADLRGTSDPYVK-VQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA  569 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~-v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~  569 (713)
                      .-.|...+++++|+    ++   ..|||+. +++|.+.+||.+.++|+||+|||...|.+.   ....++.|||.++++.
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  123 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK  123 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence            55688999999997    33   3688765 667889999999999999999998888773   3456999999999999


Q ss_pred             CCeeEEEEEEceecCCCC
Q 005132          570 SSSIGDCVVEYQRLPPNQ  587 (713)
Q Consensus       570 d~~iG~~~i~L~~l~~~~  587 (713)
                      ++.+|.|.++|.++...+
T Consensus       124 n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        124 NTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HHhhhheeecHhhccHHH
Confidence            999999999988776544

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.13  E-value=0.00035  Score=73.35  Aligned_cols=118  Identities=16%  Similarity=0.230  Sum_probs=95.3

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCeeeeEEEEecC--------------CC
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQWHQTLEFPDD--------------GS  555 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~wne~~~f~v~--------------~~  555 (713)
                      ....|.+.|.++++++........|-|+++.+-     .++.+|.+++.|.+|.|+|.|.+.+.              ..
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345677888888888766544566889999882     35679999999999999999999873              35


Q ss_pred             eEEEEEEECCCC-CCCCeeEEEEEEceecCCCCceeeEEEcCC---CCCcEEEEEEEEEec
Q 005132          556 PLTLHVRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLITRKVP  612 (713)
Q Consensus       556 ~l~i~V~D~d~~-~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~---~~~G~i~~~l~~~~p  612 (713)
                      .+.|++|++..| ..|.++|.+.+.|..|.........++|.+   ...|.|.+++.++-|
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence            699999998875 458899999999999987777788899864   346999999998655

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.10  E-value=0.00048  Score=57.08  Aligned_cols=91  Identities=14%  Similarity=0.310  Sum_probs=66.8

Q ss_pred             EEEEEccCcccccc-CCCCCcEEEEEE--CC-eEEEEEeeeCCCCCeeeeEEEEec-----CCCeEEEEEEECCCCCCCC
Q 005132          501 LVIVEARDLVAADL-RGTSDPYVKVQY--GD-LKKRTKVIFKTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALLASS  571 (713)
Q Consensus       501 v~v~~a~~L~~~d~-~g~~DPyv~v~~--~~-~~~kT~v~~~t~nP~wne~~~f~v-----~~~~l~i~V~D~d~~~~d~  571 (713)
                      +++++++||.-... .....-|++--+  .+ ...||.+.+...||+|+|+|.|.+     ..-.|.+.|+.  ..-+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            67889999864332 233445666333  33 467999999999999999999987     46788999988  556788


Q ss_pred             eeEEEEEEceecCCCCceeeEEE
Q 005132          572 SIGDCVVEYQRLPPNQMADKWIP  594 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~~~~~~w~~  594 (713)
                      .||.|.+.|+++-.. ....|..
T Consensus        81 ~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCCHH-Hhhhhhc
Confidence            999999999988543 3445543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.09  E-value=0.0054  Score=65.24  Aligned_cols=108  Identities=20%  Similarity=0.299  Sum_probs=91.5

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec----------CCCeEEEEEEECC-CC
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----------DGSPLTLHVRDHN-AL  567 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----------~~~~l~i~V~D~d-~~  567 (713)
                      +.++|++|++++...   .-.-.+..++++....|..+..+-.|.||..+.+.+          .+..|++++|..| .-
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            678999999998762   345678899999999999999999999999999997          3678999999988 55


Q ss_pred             CCCCeeEEEEEEceec---CCC--CceeeEEEcCCC------CCcEEEEEEEE
Q 005132          568 LASSSIGDCVVEYQRL---PPN--QMADKWIPLQGV------RKGEIHVLITR  609 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~i~~~l~~  609 (713)
                      +..+.||.+.++|...   ..+  .....||+|-+.      .+-||++.+.+
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i  131 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI  131 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence            7778999999999988   544  578899999654      35899999988

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.00081  Score=70.19  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=84.9

Q ss_pred             ccEEEEEEEEeEcCCCCCCC-CCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEE-ecC
Q 005132          365 GRKINVTVVEGKDLMPKDKS-GKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN-EEI  436 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d-~~~  436 (713)
                      .|.+.|.|++|++|..+... ..++|||+||+  ++   .+.+|+.. +|.+|-|-+...|.-..+...|.+.||- +..
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygR  347 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGR  347 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccc
Confidence            47899999999999655432 37899999999  33   26788888 9999999999999877778999999995 444


Q ss_pred             C-CCceeEEEEEeccccccCC-eeeeeeeceec
Q 005132          437 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV  467 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~  467 (713)
                      . .+.++|.+.+-+.++.... ....||+|.+.
T Consensus       348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            4 7889999999999998766 67889999874

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.74  E-value=0.0011  Score=69.89  Aligned_cols=114  Identities=18%  Similarity=0.311  Sum_probs=91.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CC--eEEeccCC-CCCCCccceEEEEEEeCC------------CceE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIGG------------GECL  427 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~--~~~kT~~~-~t~nP~wne~f~f~v~~~------------~~~l  427 (713)
                      ..|.+.|+++++++.-......|.|+++.+   ++  +..+|.++ .+.+|.|+|.|.+.+...            ...+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            368888899998876554456789999987   33  46677778 999999999999997662            2378


Q ss_pred             EEEEEEecCC--CCceeEEEEEeccccccCCeeeeeeeceecc---cceEEEEEEEE
Q 005132          428 MVKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKVN---TGELRLQIEAT  479 (713)
Q Consensus       428 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~---~G~I~l~l~~~  479 (713)
                      +|++|++..+  +|.++|.+.+.|.-|.........++|.+..   .|.|.+.+...
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            9999999888  8999999999999998777777888887632   58888888765

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.34  E-value=0.029  Score=52.60  Aligned_cols=119  Identities=12%  Similarity=0.268  Sum_probs=85.9

Q ss_pred             CCCceEEEEEEEccCccccccC--CCCCc--EEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC----------------
Q 005132          494 SGNGWIELVIVEARDLVAADLR--GTSDP--YVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----------------  553 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d~~--g~~DP--yv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----------------  553 (713)
                      +....|.++|..++-+..-...  +..+.  ++-+.+++++++|+.+..+++|.|+|.|.|+++                
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            5667889999998866432111  33444  444555899999999999999999999999973                


Q ss_pred             CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCce--eeEEEcCC------CCCcEEEEEEEEEecC
Q 005132          554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQG------VRKGEIHVLITRKVPE  613 (713)
Q Consensus       554 ~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~--~~w~~L~~------~~~G~i~~~l~~~~p~  613 (713)
                      ...|.+-|.-.|..+...++|.-.+....+......  ..-..|.|      ...|-|.+++++ +|.
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL-lP~  152 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL-LPN  152 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe-ecC
Confidence            356888888888877778999999988777544333  22233433      246999999998 664

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.44  E-value=0.046  Score=62.96  Aligned_cols=108  Identities=18%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECC-------eEEEEEeee-CCCCCeeee-EEEEec----CCCeEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIF-KTLNPQWHQ-TLEFPD----DGSPLTLHV  561 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~~~f~v----~~~~l~i~V  561 (713)
                      -.+.+.|+|++|+-|..++    ...||.|.+-+       ..++|+++. +++||+|+| .|.|.-    .-..|+|.|
T Consensus       701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            3478999999999887664    34899999943       356888876 579999996 788872    357899999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE--EecC
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR--KVPE  613 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~--~~p~  613 (713)
                      |+..    ..+||+-.+|++.+..+-   +.+.|.+..     --.|.+.+.+  |+|.
T Consensus       777 yeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~kdyvpd  828 (1189)
T KOG1265|consen  777 YEEG----GKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTLPALFVYIVLKDYVPD  828 (1189)
T ss_pred             eccC----CceeeeeccchhcccCcc---eeEEecCCCCCccccceeEEEEEeeccCCc
Confidence            9865    469999999999998763   455564321     2455655555  5665

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.19  E-value=0.032  Score=64.16  Aligned_cols=84  Identities=27%  Similarity=0.434  Sum_probs=68.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C------CeEEeccCC--CCCCCccce-EEEEE--EeCCCceEEEEEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G------KIVQRTRTA--HSPNHVWNQ-KFELD--EIGGGECLMVKCYN  433 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~------~~~~kT~~~--~t~nP~wne-~f~f~--v~~~~~~l~i~V~d  433 (713)
                      +.+.|+|+++.-|..++    ...||+|.+ |      ...++|++.  ++.||+|+| .|.|.  +...-..|+|.||+
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            68999999999997665    348999998 2      247899999  899999985 46666  33346789999999


Q ss_pred             ecCCCCceeEEEEEeccccccCC
Q 005132          434 EEIFGDENMGSARVNLEGLVEGS  456 (713)
Q Consensus       434 ~~~~~d~~lG~~~i~l~~l~~~~  456 (713)
                      ..   ..+||+-.+|+..+..+.
T Consensus       779 Eg---gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  779 EG---GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             cC---CceeeeeccchhcccCcc
Confidence            85   689999999999998765

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.75  E-value=0.15  Score=49.32  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  564 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~  564 (713)
                      ..++|+|+.++++..  .....+-||++.+  |++.    ..|+...-+.++.|||.+.|++.      ...|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            478999999999986  2345677888655  5542    35555444567999999999872      67899999987


Q ss_pred             CCCC----------------CCCeeEEEEEEceec
Q 005132          565 NALL----------------ASSSIGDCVVEYQRL  583 (713)
Q Consensus       565 d~~~----------------~d~~iG~~~i~L~~l  583 (713)
                      ....                .+..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            6422                246788888887654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.74  E-value=0.3  Score=45.96  Aligned_cols=115  Identities=15%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             cEEEEEEEEeEcCCCCCC--CCCCCcEEEEEE--CCeEEeccCC-CCCCCccceEEEEEEeCC--------------Cce
Q 005132          366 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------GEC  426 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l--~~~~~kT~~~-~t~nP~wne~f~f~v~~~--------------~~~  426 (713)
                      ..|+++|..++-....-.  .+..+.-..+.+  +++.++|+.+ -+.+|.|+|.|-|.+...              .+.
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p   88 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP   88 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence            479999999987632111  145555555554  8999999999 999999999999997653              246


Q ss_pred             EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeee--eceec------ccceEEEEEEEEe
Q 005132          427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWV--PLEKV------NTGELRLQIEATR  480 (713)
Q Consensus       427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~--~L~~~------~~G~I~l~l~~~~  480 (713)
                      |.+.|..-+.. ...++|...+..+.+........++  .|.+.      ..|-+.++++..|
T Consensus        89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP  151 (156)
T PF15627_consen   89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP  151 (156)
T ss_pred             eEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence            78888777665 4578899999888877655432233  33332      3466777776653

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.66  E-value=0.17  Score=48.01  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  564 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~  564 (713)
                      ..++|.|+.++++...   ..+|-||++.+  |++.    ..|+.+.- .++.|||.+.|++.      ...|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4688999999998764   35688999866  4432    23443333 57999999999972      67899999987


Q ss_pred             CCCC----CCCeeEEEEEEceec
Q 005132          565 NALL----ASSSIGDCVVEYQRL  583 (713)
Q Consensus       565 d~~~----~d~~iG~~~i~L~~l  583 (713)
                      ..-.    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    124699999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.36  E-value=0.29  Score=47.37  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEec
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE  435 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~  435 (713)
                      .++|+|+.+.++..  .....+-||++.+  |++    ...|+.+ .+.++.|||..+|.+.-   + ...|.|.+|+..
T Consensus         9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            68999999999975  2344667777655  655    3467666 66789999999998643   2 789999999865


Q ss_pred             CC-----------------CCceeEEEEEeccc
Q 005132          436 IF-----------------GDENMGSARVNLEG  451 (713)
Q Consensus       436 ~~-----------------~d~~lG~~~i~l~~  451 (713)
                      ..                 .+..||.+.++|-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEc
Confidence            32                 13578888887766

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.23  E-value=1.1  Score=41.66  Aligned_cols=111  Identities=17%  Similarity=0.236  Sum_probs=77.1

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeE---EEEEee-eCCCCCeeeeEEEEec-----------CCCeEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVI-FKTLNPQWHQTLEFPD-----------DGSPLTL  559 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~v~-~~t~nP~wne~~~f~v-----------~~~~l~i  559 (713)
                      ....+.+.+.+..+++.    ....-||+...++..   ..|... -.+-.-.|||.|.+++           ....+.|
T Consensus         5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            34677888999988876    223445555555543   344433 3455688999999986           2456899


Q ss_pred             EEEECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcCCC--CCcEEEEEEEE
Q 005132          560 HVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGV--RKGEIHVLITR  609 (713)
Q Consensus       560 ~V~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~~~l~~  609 (713)
                      .|+....-++...+|.+.|+|+++...  .+...-++|...  ....|.++|++
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~  134 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISL  134 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEE
Confidence            998875433336999999999999763  566777888754  45888888887

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.13  E-value=1.1  Score=41.65  Aligned_cols=114  Identities=17%  Similarity=0.250  Sum_probs=79.7

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe---EEeccCC--CCCCCccceEEEEEEeC---C------CceEEEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---G------GECLMVKC  431 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~---~~kT~~~--~t~nP~wne~f~f~v~~---~------~~~l~i~V  431 (713)
                      ..+.++|++..+++.    .....||+..-++.   ..+|...  .+..-.||+.|.+.+.-   .      ...+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            368899999999876    22334444444544   3566666  67778999999988532   1      34788899


Q ss_pred             EEecCC-CCceeEEEEEeccccccC--Ceeeeeeeceec--ccceEEEEEEEEeecC
Q 005132          432 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVDD  483 (713)
Q Consensus       432 ~d~~~~-~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~I~l~l~~~~~~~  483 (713)
                      +..... +...+|.+.++|.++...  .....-++|...  ....|.+++.+..+..
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE  139 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence            887433 236999999999999874  456677788765  3567888888776543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.05  E-value=0.18  Score=47.96  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCCCCCeeEEEEEEcee
Q 005132          515 RGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQR  582 (713)
Q Consensus       515 ~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~  582 (713)
                      ...+|-||++.+  ++..    ..|....-+..+.|||.+.|++.      +..|.|+|||.+..++...+|.++++|-+
T Consensus        27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            345788888866  4432    35554444567889999999972      67899999998876667799999999876


Q ss_pred             c
Q 005132          583 L  583 (713)
Q Consensus       583 l  583 (713)
                      -
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.04  E-value=0.23  Score=47.17  Aligned_cols=86  Identities=17%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEE--CCe----EEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  564 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~  564 (713)
                      ..++|.+....++... .....+-||++.+  |++    ...|.......++.|||.+.|++.      ...|.|.||+.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            4567778887777652 1234677777755  443    223433333468999999999972      67899999998


Q ss_pred             CCCC--CCCeeEEEEEEceec
Q 005132          565 NALL--ASSSIGDCVVEYQRL  583 (713)
Q Consensus       565 d~~~--~d~~iG~~~i~L~~l  583 (713)
                      +..+  .+..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7654  467999999998765

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.03  E-value=0.4  Score=45.54  Aligned_cols=83  Identities=14%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCCCCCCCccceEEEEEEeC----CCceEEEEEEEecC
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTAHSPNHVWNQKFELDEIG----GGECLMVKCYNEEI  436 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~  436 (713)
                      .++|+|+++.++...+   ..+-||++.+  |++    ...|+.+...++.|||..+|.+.-    ....|.|.+|+...
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~   85 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG   85 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence            6899999999997542   4578888765  654    335655533689999999998643    27899999999764


Q ss_pred             C-----CCceeEEEEEecccc
Q 005132          437 F-----GDENMGSARVNLEGL  452 (713)
Q Consensus       437 ~-----~d~~lG~~~i~l~~l  452 (713)
                      .     ....+|.+.++|-+.
T Consensus        86 ~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          86 RKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ccCCCCceEEEEEEEEEEECC
Confidence            2     124699999998773

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.99  E-value=0.2  Score=48.35  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeee--C--CCCCeeeeEEEEecC------CCeEEE
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIF--K--TLNPQWHQTLEFPDD------GSPLTL  559 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~--~--t~nP~wne~~~f~v~------~~~l~i  559 (713)
                      ...++|+|..+++++........|-|+.+.+  |++.    ..|+...  +  ...+.|||.+.|++.      ...|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3568899999999998876667889999866  5542    2443321  2  235779999999972      678999


Q ss_pred             EEEECCCCC---------CCCeeEEEEEEceec
Q 005132          560 HVRDHNALL---------ASSSIGDCVVEYQRL  583 (713)
Q Consensus       560 ~V~D~d~~~---------~d~~iG~~~i~L~~l  583 (713)
                      .+|+....+         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999877644         356899999998764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.61  E-value=0.74  Score=43.66  Aligned_cols=85  Identities=19%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEec
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE  435 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~  435 (713)
                      .++|+++...++... .....+-||++.+  |++    ...|... ...++.|||..+|.+.-   + ...|.|.+|+.+
T Consensus         9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            578888888887641 1234566776655  554    3455555 55789999999998543   2 789999999976


Q ss_pred             CC---CCceeEEEEEecccc
Q 005132          436 IF---GDENMGSARVNLEGL  452 (713)
Q Consensus       436 ~~---~d~~lG~~~i~l~~l  452 (713)
                      ..   .+..||.+.++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            54   357999999998874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.07  E-value=1.2  Score=37.66  Aligned_cols=83  Identities=17%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CCcEEEEEECC-eEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEEEEeccccccCCeeeeeeece
Q 005132          387 CDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       387 ~dpyv~v~l~~-~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .+..+.+.+++ .+..|.-..-.+..|++.|.+.. +.+..|.|.||-+|.  ..+-|...+.|++...    ....+|+
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~L-dRsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le   81 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLEL-ERSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME   81 (98)
T ss_pred             cceEEEEEEcCeEEeeccccccccccccceeEEEe-ecccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence            67788899965 68888887557899999999994 568889999998765  4566777788888422    2334444


Q ss_pred             ecccceEEEEEEE
Q 005132          466 KVNTGELRLQIEA  478 (713)
Q Consensus       466 ~~~~G~I~l~l~~  478 (713)
                        ++|.+...+.|
T Consensus        82 --pqg~l~~ev~f   92 (98)
T cd08687          82 --PQLCLVAELTF   92 (98)
T ss_pred             --cccEEEEEEEe
Confidence              46777777766

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=91.65  E-value=1.2  Score=37.65  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=57.0

Q ss_pred             CCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEc
Q 005132          518 SDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  595 (713)
Q Consensus       518 ~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  595 (713)
                      ++-.+.+.+.+. ..+|.- +.-.+..||+.|.+..+ +..|.|.||-+|-   ....|-..+.|.+...    ..-++|
T Consensus         9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~~~----~~~~~l   80 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EVQLDM   80 (98)
T ss_pred             cceEEEEEEcCeEEeeccc-cccccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhhcc----cceecc
Confidence            566777888774 445543 22357899999999986 7899999998775   2356777777777322    233333


Q ss_pred             CCCCCcEEEEEEEE
Q 005132          596 QGVRKGEIHVLITR  609 (713)
Q Consensus       596 ~~~~~G~i~~~l~~  609 (713)
                        .+.|.+...++|
T Consensus        81 --epqg~l~~ev~f   92 (98)
T cd08687          81 --EPQLCLVAELTF   92 (98)
T ss_pred             --ccccEEEEEEEe
Confidence              377899888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.12  E-value=0.91  Score=43.23  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             CCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC---C-CceEEEEEEEecCC-CCceeEEEEEecccc
Q 005132          385 GKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEEIF-GDENMGSARVNLEGL  452 (713)
Q Consensus       385 g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~---~-~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l  452 (713)
                      ..++-||++.+  |++    ...|+.+ -+..+.|||...|.+.-   + ...|.|.||+.... ....+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            44677887766  544    3466666 66789999999999654   2 78999999998755 567899999998774


Q ss_pred             ccCCeeeeeeeceecccceEEEEEEE
Q 005132          453 VEGSVRDIWVPLEKVNTGELRLQIEA  478 (713)
Q Consensus       453 ~~~~~~~~w~~L~~~~~G~I~l~l~~  478 (713)
                       .+.       |   .+|...+.+..
T Consensus       108 -~g~-------L---r~G~~~l~lw~  122 (159)
T cd08397         108 -DGT-------L---RRGRQKLRVWP  122 (159)
T ss_pred             -CCc-------E---ecCCEEEEEEe
Confidence             221       1   24777777753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=90.94  E-value=0.36  Score=49.53  Aligned_cols=115  Identities=14%  Similarity=0.030  Sum_probs=80.1

Q ss_pred             CCCceEEEEEEEccCccccc--cCCCCCcEEEEEECCe-EEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC
Q 005132          494 SGNGWIELVIVEARDLVAAD--LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA  569 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~  569 (713)
                      ...|.|.++++.+|+|....  .+-+-+-||.+....+ +.+|.+......=.|.|+|...+. ...+.+-||.|+.--+
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~R  127 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRR  127 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhh
Confidence            45699999999999996443  4567799999998775 567777776667779999999874 7889999999988666


Q ss_pred             CCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          570 SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       570 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      +++.-...+.+..++.. ...+-+.|+=.++|++-+.+.+
T Consensus       128 HKLC~~g~l~~~~v~rq-spd~~~Al~lePrgq~~~r~~~  166 (442)
T KOG1452|consen  128 HKLCHLGLLEAFVVDRQ-SPDRVVALYLEPRGQPPLRLPL  166 (442)
T ss_pred             ccccccchhhhhhhhhc-CCcceeeeecccCCCCceeccc
Confidence            66544434444433322 2233444544566766666554

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.36  E-value=1.6  Score=42.28  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEE--CCe---EEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECC
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL---KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHN  565 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d  565 (713)
                      ..++|.|..+.+ +..+......-||++.+  |+.   ..+|....-+.+|.|||.+.|++.      ...|.|.||+..
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            356777777763 33322223345666543  443   235555555667999999999972      678999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.88  E-value=2  Score=41.63  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=46.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCeE---EeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~~---~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      .++|+|+++.++. .+......-||++.+  |+..   .+|... -+.++.|||...|.+.-    ....|.|.||+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            5888888887442 222333446666644  6552   356666 67789999999998643    2789999999863

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=89.77  E-value=2.8  Score=40.92  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc-ceeEEEEEEccc
Q 005132          227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY-DYLTSCEVKMKY  282 (713)
Q Consensus       227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d-d~lG~~~i~l~~  282 (713)
                      .+++.+...+.+|.|||++-+.+...   ...|.|..++......++ ..+|.+.++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            45777788889999999999987553   569999998865421122 368988888753

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.30  E-value=1.8  Score=41.77  Aligned_cols=86  Identities=21%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-----CCCCCccceEEEEEEeC---C-CceEEEEE
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-----HSPNHVWNQKFELDEIG---G-GECLMVKC  431 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-----~t~nP~wne~f~f~v~~---~-~~~l~i~V  431 (713)
                      .+.|+|..+.+++........+-|+++.+  |++    ...|+..     -...+.|||..+|.+.-   + ...|.|.+
T Consensus         9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl   88 (171)
T cd04012           9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL   88 (171)
T ss_pred             cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence            68999999999987655456778887755  654    2345432     23357799999998643   2 78999999


Q ss_pred             EEecCC----------CCceeEEEEEecccc
Q 005132          432 YNEEIF----------GDENMGSARVNLEGL  452 (713)
Q Consensus       432 ~d~~~~----------~d~~lG~~~i~l~~l  452 (713)
                      |+....          .+..||.+.++|-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEecCCccccccccccceEEEEEeEeeEcc
Confidence            986543          246889999988773

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.18  E-value=2.7  Score=39.12  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=39.9

Q ss_pred             EEEeeeCC-CCCeeeeEEEEec------CCCeEEEEEEECCCCCCC----CeeEEEEEEceec
Q 005132          532 RTKVIFKT-LNPQWHQTLEFPD------DGSPLTLHVRDHNALLAS----SSIGDCVVEYQRL  583 (713)
Q Consensus       532 kT~v~~~t-~nP~wne~~~f~v------~~~~l~i~V~D~d~~~~d----~~iG~~~i~L~~l  583 (713)
                      .|+...-+ .++.|||.+.|++      ....|.|.||+.+....+    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56656655 7999999999996      367899999988776555    6899999998765

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=88.69  E-value=3.7  Score=40.17  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc---ceeEEEEEEcc
Q 005132          227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMK  281 (713)
Q Consensus       227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d---d~lG~~~i~l~  281 (713)
                      .+++.+...+.+|.|+|++-+.+...   +..|.|.+++......+|   ..+|.+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            46777778889999999999887543   569999998865322233   36888888875

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=86.49  E-value=1.3  Score=45.61  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             ccEEEEEEEEeEcCCC--CCCCCCCCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CC
Q 005132          365 GRKINVTVVEGKDLMP--KDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GD  439 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~--~~~~g~~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d  439 (713)
                      .|+|.++++.+|+|..  ....-..+-||.+..+.+ ..+|.+. ....-.|.|+|+.++.. ...+.+-||.++.- +.
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RH  128 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRH  128 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhc
Confidence            3799999999999943  333456788999998754 5666665 56666788999887543 45667778877654 33


Q ss_pred             ce--eEEEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132          440 EN--MGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       440 ~~--lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      ++  .|  .+.+..+.. ...++.+.|.-.++|.+.+.+.+.
T Consensus       129 KLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  129 KLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA  167 (442)
T ss_pred             cccccc--hhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence            32  33  222222222 222344555555678888888654

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=85.70  E-value=6.3  Score=38.51  Aligned_cols=51  Identities=22%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC--C-CceeEEEEEec
Q 005132          399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--G-DENMGSARVNL  449 (713)
Q Consensus       399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~-d~~lG~~~i~l  449 (713)
                      .++|.+. ++.+|.|+|++.+.++..   ...|.|++++....  + ...+|.+-+||
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            6788888 999999999999998764   77899988875433  1 24567666666

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=85.47  E-value=3.5  Score=36.45  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             EEEEEECC-eEEEEEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCC--
Q 005132          521 YVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ--  587 (713)
Q Consensus       521 yv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~--  587 (713)
                      ||.+.+-. +.+.|.++. ..+|.+|-+-.|.|.          ...+.|+++..- ....+.+|.+.+++..+....  
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~   79 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGE   79 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S-
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCc
Confidence            55555544 566777777 789999998888872          578999998754 233578999999999885332  


Q ss_pred             ceeeEEEcC---CCCCcEEEEEEEEEec
Q 005132          588 MADKWIPLQ---GVRKGEIHVLITRKVP  612 (713)
Q Consensus       588 ~~~~w~~L~---~~~~G~i~~~l~~~~p  612 (713)
                      ....-..|.   +..-|.|.+.++++.|
T Consensus        80 ~i~~~~~l~g~~~~~~g~l~y~~rl~~P  107 (107)
T PF11618_consen   80 RIHGSATLVGVSGEDFGTLEYWIRLRVP  107 (107)
T ss_dssp             -EEEEEEE-BSSS-TSEEEEEEEEEEE-
T ss_pred             eEEEEEEEeccCCCeEEEEEEEEEecCC
Confidence            344444554   3445888888887654

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.02  E-value=4.3  Score=35.32  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=45.2

Q ss_pred             EEEEEEEccCccccccCCCCCcEEEEEE--CCeE----EEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 005132          499 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA  566 (713)
Q Consensus       499 L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~  566 (713)
                      +.+.+...++.........+|-||++.+  |++.    ..|+.+.-...+.|||.+.|++.      ...|.+.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            5566666666655433333688888866  4442    34544443456899999999972      6789999998653

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=83.73  E-value=8.8  Score=37.64  Aligned_cols=52  Identities=12%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC--CC---ceeEEEEEecc
Q 005132          399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--GD---ENMGSARVNLE  450 (713)
Q Consensus       399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~d---~~lG~~~i~l~  450 (713)
                      .++|-+. ++.+|.|+|++.+.++..   ...|.|++++....  +|   ..+|.+-+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            7888888 999999999999998763   77999999875433  22   45676666663

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=83.64  E-value=5.2  Score=37.20  Aligned_cols=53  Identities=15%  Similarity=0.108  Sum_probs=40.2

Q ss_pred             EeccCC-CC-CCCccceEEEEEEeC----CCceEEEEEEEecCC-CC----ceeEEEEEecccc
Q 005132          400 QRTRTA-HS-PNHVWNQKFELDEIG----GGECLMVKCYNEEIF-GD----ENMGSARVNLEGL  452 (713)
Q Consensus       400 ~kT~~~-~t-~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l  452 (713)
                      ..|+.. .+ .++.|||..+|.+.-    ....|.|.||..+.. .+    ..||.+.++|-+.
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            366666 55 799999999999643    378999999998776 33    6899999998875

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=83.40  E-value=3  Score=40.69  Aligned_cols=56  Identities=9%  Similarity=0.085  Sum_probs=34.8

Q ss_pred             EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc--ceeEEEEEEccc
Q 005132          227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY  282 (713)
Q Consensus       227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d--d~lG~~~i~l~~  282 (713)
                      ...+++...+.+|.|+|+|-+.+...   +..|.|.+|+......++  ..+|.+.++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45666677889999999999988654   569999999987542233  599999999987

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=81.55  E-value=8.3  Score=33.52  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe----EEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~----~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      +.+.+..+.+..........+-||++.+  |++    ...|+.+ -...+.|||...|.+.-    ....|.|.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5567777777754433223578888765  654    3356666 56679999999998543    2789999999864

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	713
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-08
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-08
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-07
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-07
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		4e-04
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		9e-07
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-06
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		3e-06
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		3e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		8e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		2e-05
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		6e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		6e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		6e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		6e-05
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		2e-04
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-04
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		3e-04
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-04

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSP 556
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP     
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP----- 67
Query: 557 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 609
               ++D + +L  +       E    PP+ +    IPL  +R G+ +  + +
Sbjct: 68  ----IKDIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSIRDGQPNCYVLK 112

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 36/64 (56%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 558
           I + +V A+ L A D  G+SDPYV VQ G  KKRTK I+  LNP W +   F    S   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 559 LHVR 562
           + VR
Sbjct: 79  IKVR 82

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 421
           V +++  DL  KD +G  DPYVK+       K  Q      + N ++N+ F+    L E+
Sbjct: 24  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 472
              + L    Y+ + F   ++   +V L+ L+E +     R +W  +     EK + GEL
Sbjct: 84  AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 141
Query: 473 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 528
              +                    G + + I++A +L A DL G SDPYVK         
Sbjct: 142 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 187
Query: 529 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 578
           LKKR   I K TLNP +++ L F  D +P       L++ V D++ +  +  IG C V
Sbjct: 188 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 550
           G+  + + I++A DL A D  G SDPYVK+    D KK+  TKV  KTLNP +++T +F
Sbjct: 18  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 421
           V +++  DL  KD +G  DPYVK+       K  Q      + N ++N+ F+    L E+
Sbjct: 25  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 472
              + L    Y+ + F   ++   +V L+ L+E +     R +W  +     EK + GEL
Sbjct: 85  AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 142
Query: 473 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 528
              +                    G + + I++A +L A DL G SDPYVK         
Sbjct: 143 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 188
Query: 529 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 578
           LKKR   I K TLNP +++ L F  D +P       L++ V D++ +  +  IG C V
Sbjct: 189 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 550
           G+  + + I++A DL A D  G SDPYVK+    D KK+  TKV  KTLNP +++T +F
Sbjct: 19  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 77

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPDDGSP--- 556
           I++A++L A D  GTSDP+VK+     KK    TKV  K LNP W++T  F  +G P   
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGFPYEK 89
Query: 557 -----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 592
                L L V D++    +  IG+  +   ++   QM   W
Sbjct: 90  VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 36/148 (24%)
Query: 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-- 526
           TGE++LQI              N   GN  I   I++AR+LV  D  G SDP+VKV    
Sbjct: 6   TGEIQLQI--------------NYDLGNLIIH--ILQARNLVPRDNNGYSDPFVKVYLLP 49
Query: 527 ------------GDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL 568
                        + K+RTK + K+LNP+W+QT+ +            L + V D++   
Sbjct: 50  GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109
Query: 569 ASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
           ++  +G+ +++           +W PL+
Sbjct: 110 SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
             D    L++ + D      N  + S S G  V E  ++P    A  W  L    +GE +
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 131

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
             D    L++ + D      N  + S S G  V E  ++P    A  W  L    +GE +
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 132

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 503 IVEARDLVAADLRGTSDPYVKV-QYGDLKKR--TKVIFKTLNPQWHQTLEFPDD-----G 554
           I++A +L A D+ GTSDPYVKV    D KK+  TKV  KTLNP +++   F        G
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84
Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
             L + V D +       IG+  V    +    + ++W  LQ   K E
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE 132

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 551
           +V+ +A++LV  D  G SDPYVK++       + K++TK I  +LNP+W++T  F     
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 552 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
           D    L++ + D      N  + S S G  + E Q+       D W  L    +GE
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 285

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 16  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 75
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK 600
                 G  L + V D +       IG+  V    +    + ++W  LQ   K
Sbjct: 76  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 128

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 550
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 551 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
             D    L++ + D      N    S S G  V E  + P    A  W  L    +GE +
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFG--VSELXKXP----ASGWYKLLNQEEGEYY 133

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 501 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 551
           +V+ +A++LV  D  G SDPYVK++       + K++TK I  +LNP+W++T  F     
Sbjct: 35  VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 552 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
           D    L++ + D      N  + S S G  + E Q+       D W  L    +GE
Sbjct: 95  DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 144

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 552
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 553 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 35/149 (23%)
Query: 470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--- 526
           G L+L+I A   D+               I + + EAR+L+  D  G SDPYVK++    
Sbjct: 8   GRLQLEIRAPTADE---------------IHVTVGEARNLIPMDPNGLSDPYVKLKLIPD 52
Query: 527 --GDLKKRTKVIFKTLNPQWHQTLEF---PDD-GSPLTLHVRD-----HNALLASSSIGD 575
                K++T+ +  TLNP W++T  F   P D    L++ V D      N  + + S G 
Sbjct: 53  PRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFG- 111
Query: 576 CVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
            V E  + P     D W  L    +GE +
Sbjct: 112 -VSELLKAP----VDGWYKLLNQEEGEYY 135

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 550
           N  ++  I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 551 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598
                +D    TL +   D +    +  IG+     ++L  NQ  +  I L+ V
Sbjct: 88  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 550
           N  ++  I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++
Sbjct: 26  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Query: 551 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 598
                +D    TL +   D +    +  IG+     ++L  NQ  +  I L+ V
Sbjct: 86  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 139

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 458 RDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGT 517
           R  WV   K    E  +  E  + +    +R Q   SG G + + ++EA +L A    G 
Sbjct: 350 RTAWVQKIKA-ASEQYIDTEKKQREKAYQARSQKT-SGIGRLMVHVIEATELKACKPNGK 407
Query: 518 SDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF-----PDDGSPLTLHVRDH 564
           S+PY ++  G     T+ I  TLNP+W+   +F       D   LTL  RD 
Sbjct: 408 SNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLKK-----RTKVIFKTLNPQWHQTLEFP 551
           + + +V   DL   D+ G SDPYVK+     D  +     +TK I KTLNP+W++   F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 552 DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLP 584
            + S   L   V D N L     +G   V    LP
Sbjct: 83  VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLP 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	713
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-37
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-35
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-27
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-31
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-29
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-22
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-28
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-26
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-25
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	9e-26
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	9e-24
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-25
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-20
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	8e-25
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-21
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-24
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-18
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-23
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-19
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-22
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-13
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-19
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	7e-16
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-19
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-17
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-12
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-18
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-12
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-18
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-18
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-11
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-18
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-13
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-17
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	5e-09
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-11
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-16
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	7e-08
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-15
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-10
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-15
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-11
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-15
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	5e-09
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-08
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-14
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-06
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	8e-14
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-08
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-13
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	9e-08
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-13
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	9e-08
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	6e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	9e-13
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-07
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-12
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-07
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-09
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	4e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	7e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-06

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  140 bits (355), Expect = 2e-37
 Identities = 59/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFE 417
                ++ V +++  +L   D  G  DPYVK   L   K    T+    + N V+N++F 
Sbjct: 15  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 473
                    G+ L++  Y+ + F   + +G  +V +  +  G V + W  L+     E  
Sbjct: 75  FKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134

Query: 474 LQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL---- 529
              +         + G+        + +VI+EA++L   D+ G SDPYVK+         
Sbjct: 135 KLGDICFSLRYVPTAGK--------LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 186

Query: 530 -KKRTKVIFKTLNPQWHQTLEF-----PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRL 583
            KK+T +   TLNP ++++  F           + + V D++ +  + +IG   V Y   
Sbjct: 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246

Query: 584 P------------PNQMADKWIPLQGVRKGEIHVLITR 609
                        P +   +W  LQ   + +  + + +
Sbjct: 247 GAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVKK 284

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  128 bits (325), Expect = 4e-35
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 554
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP  D  
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 72

Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD---KWIPLQGVRKGEIHVLIT 608
             L + V D +       +G   +    +   Q      K   L+   KG I++ + 
Sbjct: 73  DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  105 bits (265), Expect = 5e-27
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 355 SGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWN 413
           SGSS  +   G  + V V++  DL+  D SGK DP+  L+ G    +T T + + N  WN
Sbjct: 3   SGSSGDVKDVGI-LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 414 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW---VPLEKVNT 469
           + F        + L V  ++E+     + +G   + L  + +G           LE+   
Sbjct: 62  KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121

Query: 470 GELRLQIE 477
           G + L+++
Sbjct: 122 GVIYLEMD 129

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  123 bits (311), Expect = 1e-31
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 39/242 (16%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 417
                ++ V +++  DL  KD +G  DPYVK+      K   +T+    + N ++N+ F+
Sbjct: 16  LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARV--NLEGLVEGSVRDIWVPL-----EK 466
                       L    Y+ + F   + +G   +   LE   +   R +W  +     EK
Sbjct: 76  FSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135

Query: 467 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 526
            + GEL   +                    G + + I++A +L A DL G SDPYVK   
Sbjct: 136 ADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181

Query: 527 GD-----LKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIGDC 576
                   K++T +   TLNP +++ L F       +   L++ V D++ +  +  IG C
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVC 241

Query: 577 VV 578
            V
Sbjct: 242 RV 243

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  112 bits (283), Expect = 2e-29
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----- 551
           G + +++  A ++      G  DP V V + D KK+TK +   LNP W++ LEF      
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 552 -DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL-------QGVRKGEI 603
            D  S L + V+D   +  +  IG   V  + L  +Q       L              I
Sbjct: 66  LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATI 125

Query: 604 HVLIT 608
            ++I 
Sbjct: 126 DLVIG 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD- 419
           S +   + V V    ++ PK K GK DP V + +    ++T+      N VWN+  E D 
Sbjct: 3   SGSSGMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61

Query: 420 ---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNT------ 469
               +     L +   + E  G ++ +G+A V L+ L     R +   L  +        
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDT 121

Query: 470 -GELRLQIE 477
              + L I 
Sbjct: 122 GATIDLVIG 130

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  109 bits (275), Expect = 2e-28
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 20/133 (15%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDG 554
             I + +V A+ L A D  G+SDPYV VQ G  KKRTK I+  LNP W +   F   +  
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS 76

Query: 555 SPLTLHVRDHNALLASSS-----------IGDCVVEYQRLPPNQMADKWIPLQ-----GV 598
             + + V D +  + S             +G  ++E + L      D W  L        
Sbjct: 77  DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--DVWYNLDKRTDKSA 134

Query: 599 RKGEIHVLITRKV 611
             G I + I+ ++
Sbjct: 135 VSGAIRLHISVEI 147

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 98.7 bits (246), Expect = 2e-24
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 350 SQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SP 408
            Q  L G+S + +    KI++TVV  + L  KDK+G  DPYV +Q GK  +RT+T + + 
Sbjct: 5   KQSVLDGTSKWSA----KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60

Query: 409 NHVWNQKFELDEIGGGECLMVKCYNEEIFG------------DENMGSARVNLEGLVEGS 456
           N VW + F  +     + + V+  +E+               D+ +G   + +  L    
Sbjct: 61  NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120

Query: 457 VRDIWVPLEKVN-----TGELRLQIE 477
             D+W  L+K       +G +RL I 
Sbjct: 121 --DVWYNLDKRTDKSAVSGAIRLHIS 144

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  102 bits (256), Expect = 5e-26
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 503 IVEARDLV---AADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFP---DD 553
           ++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF    + 
Sbjct: 9   VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68

Query: 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
            + L + + D N  +   ++G        +   +  +       V +  + + + 
Sbjct: 69  ENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  101 bits (253), Expect = 1e-25
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 364 TGRKINVTVVEGKDLM---PKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKF 416
           +  K  V V+    +      D     DPYV+L         +RTR  +   N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 417 ELD-EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 475
           E   +      L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 476 IE 477
           +E
Sbjct: 121 LE 122

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  102 bits (255), Expect = 9e-26
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEF--PDD 553
           G +E+V+V A+ L  AD     DPYV++      +++ V       P+W++T  F   + 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRL-PPNQMADKWIPLQ--GVRKGEIHVLIT 608
            + L   + D +      ++G+  +  + +     +      +      KGEI V ++
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 96.3 bits (240), Expect = 9e-24
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 356 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP--NHVWN 413
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 414 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL--EKVNT 469
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      +  ++   
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 470 GELRLQIE 477
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  101 bits (253), Expect = 2e-25
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 496 NGWIELVIVEARDLVAADLR-----------GTSDPYVKVQYGDLK-KRTKVIFKTLNPQ 543
           NG +++ I EA  L                    DPY+ +   D +  +T    KT +P 
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA 64

Query: 544 WHQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQGVRK 600
           WH        +G  + L V     +     + +C ++++ L  N     + WI L+   +
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--E 122

Query: 601 GEIHVLIT 608
           G+++V+I 
Sbjct: 123 GKVYVIID 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 367 KINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKI-VQRTRTAHSPNH-VWN 413
            + + + E   L P   S +            DPY+ L      + +T T    N   W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 414 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVR--DIWVPLEKVNTG 470
            +F  D +  G  + +  +++   G D+ + +  +  E L++   R  + W+ LE    G
Sbjct: 67  DEFVTD-VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EG 123

Query: 471 ELRLQIE 477
           ++ + I+
Sbjct: 124 KVYVIID 130

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  100 bits (251), Expect = 8e-25
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 545
           GS G         +++ ++ A+            PYV+V      K+T+    T +P+W 
Sbjct: 27  GSMGSLTMKSQ--LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWK 84

Query: 546 QTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ---MADKWIPLQ----- 596
           Q L       S L   V  H  L +   +G   ++      +    + +  + LQ     
Sbjct: 85  QPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

Query: 597 --GVRKGEIHVLITRKVPELDKRTSIDSDSS 625
                 G++ + +     +L+     + +++
Sbjct: 145 EPTETIGDLSICLDG--LQLESEVVTNGETT 173

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 90.7 bits (225), Expect = 3e-21
 Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 348 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 407
           SGSQ    GS    S    ++ +TV+  K    K       PYV++      ++T   ++
Sbjct: 22  SGSQLGSMGSLTMKS----QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77

Query: 408 PNH-VWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWV 462
            N   W Q   +  +     L  + ++ +    D  +G+A +++   ++     + ++ V
Sbjct: 78  TNSPKWKQPLTVI-VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 136

Query: 463 PLEK-------VNTGELRLQIEATRVDDNEGSRGQ 490
            L+           G+L + ++  +++    + G+
Sbjct: 137 TLQLGGDKEPTETIGDLSICLDGLQLESEVVTNGE 171

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 97.5 bits (243), Expect = 6e-24
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLE 549
           +  + + ++    L   D+ G SDPYV+V   D         +TK I K+LNP+W++ + 
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 550 F--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD------KWIPLQ----- 596
           F        L   V D N L     +G   V    LP            K   L      
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 597 GVRKGEIHVLIT 608
              KG + + +T
Sbjct: 139 SRVKGYLRLKMT 150

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFE 417
            R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++  
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 418 LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK---------- 466
                    L+ + ++E     D+ +G   V L  L   + R       K          
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 467 -VNTGELRLQI 476
               G LRL++
Sbjct: 139 SRVKGYLRLKM 149

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 97.3 bits (242), Expect = 1e-23
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLE 549
              + + ++    L   D+ G SDPYV+V   D         +TK I K+LNP+W++ + 
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 550 FP--DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM------ADKWIPLQ----- 596
           F        +   V D N L     +G   V    LP            K   L      
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 597 GVRKGEIHV 605
              KG + +
Sbjct: 127 SRVKGYLRL 135

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFEL 418
           R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++   
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 419 DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK----------- 466
             +     ++ + ++E     D+ +G   V L  L   + R       K           
Sbjct: 68  RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127

Query: 467 VNTGELRLQI 476
              G LRL++
Sbjct: 128 RVKGYLRLKM 137

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 95.8 bits (238), Expect = 2e-23
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 496 NGWIELVIVEARDLVAADLRG----------TSDPYVKVQYGDLKK-RTKVIFKTLNPQW 544
           NG++ + I EA  L                   DPY+ V    ++  +T    KT  P +
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTY 87

Query: 545 HQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRL----PPNQMADKWIPLQGVR 599
           ++       DG  L L V     L     + +C +++Q L      +   + W+ L+   
Sbjct: 88  NEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--P 145

Query: 600 KGEIHVLIT 608
           +G++ V+IT
Sbjct: 146 EGKVFVVIT 154

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 84.3 bits (208), Expect = 3e-19
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 339 GSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGK----------CD 388
            SH  ++  SG     S SS  +   G  + V + E   L P   S +           D
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNG-YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLD 61

Query: 389 PYVKLQYG-KIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSA 445
           PY+ +      V +T T   +    +N++F  + +  G  L +  ++E   G D  + + 
Sbjct: 62  PYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCAN-VTDGGHLELAVFHETPLGYDHFVANC 120

Query: 446 RVNLEGLVEGS----VRDIWVPLEKVNTGELRLQIE 477
            +  + L+  +      + WV LE    G++ + I 
Sbjct: 121 TLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVIT 154

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 483 DNEGSRGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTK 534
           D+   RG+           + +V+ +A++LV  D  G SDPYVK+        + K++TK
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73

Query: 535 VIFKTLNPQWHQTLEFP----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD 590
            I  +LNP+W++T  F     D    L++ + D +    +  +G        L    + D
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-D 132

Query: 591 KWIPLQGVRKGEI 603
            W  L    +GE 
Sbjct: 133 GWFKLLSQEEGEY 145

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQ--KF 416
              + V V + K+L+P D +G  DPYVKL        +  Q+T+T   S N  WN+  +F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 417 ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471
           +L E      L V+ ++ ++   ++ MGS    +  L + +  D W  L     GE
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEGE 144

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF----PDD 553
           I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++     +D
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 554 GSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
               TL +   D +    +  IG+     ++L  NQ  +  I L+
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAH-SPNHVWNQK 415
            +    +  T++  K L P D +G  DPYVKL            RT+T   + N VWN+ 
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84

Query: 416 FELDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 467
            +   I   +     L +   +E+ FG +E +G  R +L+ L     ++  + LE+V
Sbjct: 85  LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLKKRTKVIFKTLNPQWHQTLEF 550
           GS    I L ++ A++L   D     DP+ K+          T  +  TL+P+W+Q  + 
Sbjct: 1   GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL 60

Query: 551 P-DDGSPLTLHVRDHN 565
                  +T+ V +H 
Sbjct: 61  YVGKTDSITISVWNHK 76

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP---NHVWNQKFELDEI 421
             KI +TV+  K+L  KD     DP+ K+      Q   T       +  WNQ ++L  +
Sbjct: 4   FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL-YV 62

Query: 422 GGGECLMVKCYNEEIFGDEN----MGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 477
           G  + + +  +N +    +     +G  R+    +               +TG  RL + 
Sbjct: 63  GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLK-----------DTGYQRLDLC 111

Query: 478 ATRVDDNEGSRGQ 490
                D +  RGQ
Sbjct: 112 KLNPSDTDAVRGQ 124

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 20/115 (17%)

Query: 502 VIVEARDLVAADLRGTSDPYVKV--------------QYGDLKKRTKVIFKTLNPQWHQT 547
            I++AR+LV  D  G SDP+VKV                 + K+RTK + K+LNP+W+QT
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 548 LEFP----DDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
           + +     +     TL V   D++   ++  +G+ +++           +W PL+
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 20/120 (16%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKL--------------QYGKIVQRTRTAH-SPNH 410
             + + +++ ++L+P+D +G  DP+VK+                 +  +RT+    S N 
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 411 VWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
            WNQ      I   +     L V  ++ + F  ++ +G   ++L           W PL+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSP 556
           I++A +L A D+ GTSDPYVKV        K  TKV  KTLNP +++   F     +   
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 557 LTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
            TL +   D +       IG+  V    +    + ++W  LQ
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 417
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 90  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 81.3 bits (201), Expect = 3e-18
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 463 PLEKVNTGELRLQIEATRVDDNEGSRGQ-----NIGSGNGWIELVIVEARDLVAADLRGT 517
           P      G +   +        E   G+     +    N  + + I++A +L A D+ GT
Sbjct: 3   PGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGT 62

Query: 518 SDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLH--VRDHNALLA 569
           SDPYVKV        K  TKV  KTLNP +++   F     +    TL   V D +    
Sbjct: 63  SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 122

Query: 570 SSSIGDCVVEYQRLPPNQMADKWIPLQG 597
              IG+  V    +    + ++W  LQ 
Sbjct: 123 HDIIGEFKVPMNTVDFGHVTEEWRDLQS 150

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 417
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 98  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 502 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF----PD 552
            I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +      
Sbjct: 23  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82

Query: 553 DGSPLTLHVR--DHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 596
           +     L +   D   +    S  +G+ ++E +    +     W  LQ
Sbjct: 83  EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQK 415
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73

Query: 416 FELDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 465
           F    +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 74  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 79.7 bits (197), Expect = 7e-18
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF----PDDGS 555
           I++A++L A D  GTSDP+VK+        K  TKV  K LNP W++T  F     +   
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 556 PLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
              L+++  D++    +  IG+  +   ++   QM   W  L+
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNHVWNQKFELD 419
               + V +++ ++L  KD SG  DP+VK+      K    T+    + N  WN+ F  +
Sbjct: 24  QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83

Query: 420 EIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 466
                +     L ++  + + F  ++ +G   + L  +    ++  W  L+ 
Sbjct: 84  GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 496 NGWIELVIVEARDLVAADL-RGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLE 549
            G +E+ ++ AR L      + T  PYVKV          KK+T++  KTL+P + Q+L 
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 550 FPDDGSPLTLHV---RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVL 606
           F +      L V    D+  +     +G   +  + L  + M   W  L          L
Sbjct: 89  FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF-----PPSSL 143

Query: 607 ITRKVPELDKRTSIDSDSSSTR 628
           +   +  L +R S  S  SS+ 
Sbjct: 144 VDPTLAPLTRRASQSSLESSSG 165

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 361 ISRTGRKINVTVVEGKDLMPKDKS-GKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWN 413
           +     ++ V V+  + L  K  S     PYVK+           ++TR A  + + ++ 
Sbjct: 25  MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84

Query: 414 QKFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNLEGLVEGSVRDIWVPL 464
           Q    DE   G+ L V  + +    D    MG A++ LE L   S+   W  L
Sbjct: 85  QSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 502 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF----PD 552
            I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +      
Sbjct: 26  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 85

Query: 553 DGSPLTLHVR--DHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
           +     L +   D   +    S  +G+ ++E +    +     W  LQ    G   
Sbjct: 86  EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGPSS 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQKFE 417
            G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ F 
Sbjct: 19  VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 78

Query: 418 LDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 465
              +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 79  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 132

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 502 VIVEARDLVAADL-RGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF---PD 552
            + E   L  AD  +  S+PYVK      +    K++T +   T+NP + +TL +     
Sbjct: 28  HVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES 87

Query: 553 DGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 604
             +  TL      H     ++ +G+  ++      ++  D  +PL G    E  
Sbjct: 88  LLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 362 SRTGRKINVTVVEGKDLMPKD-KSGKCDPYVKLQ-------YGKIVQRTRTAH-SPNHVW 412
            +  + + V V E   L   D    + +PYVK          GK  ++T     + N ++
Sbjct: 19  EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK--RKTSIKRDTVNPLY 76

Query: 413 NQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 467
           ++          +     L    ++   FG +  +G A + ++        D  +PL   
Sbjct: 77  DETLRYEIPESLL-AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135

Query: 468 NTGE 471
            + E
Sbjct: 136 ISAE 139

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF 550
           +  + L I+E + L++    GT DPYVK+           ++T+ +    +P +H+   F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 551 P----DDGSPLTLHVRDHNALLASSS-IGDCVVEYQRLP-PNQMADKWIPLQGVRKGEIH 604
           P    DD   L + V +  +    S  IG      + L  P++    W  L G   G   
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTK 144

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 343 LNNFHSGSQQSLSGSSNF---ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----Q 394
           + + H      + G+      I    R + + ++EGK L+ K   G CDPYVK+      
Sbjct: 1   MGHHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPED 59

Query: 395 YGKIVQRTRTA-HSPNHVWNQ--KFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNL 449
                Q+T+T     +  +++   F + E    + L+V  +N      ++  +G     +
Sbjct: 60  SRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119

Query: 450 EGLVEGS-VRDIWVPLEKVNTGE 471
           + L+        W  L   + G 
Sbjct: 120 KSLLTPDKEISGWYYLLGEHLGR 142

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 79.2 bits (194), Expect = 2e-15
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 10/164 (6%)

Query: 503 IVEARDL---VAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF---PDD 553
           ++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF   P+ 
Sbjct: 24  VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 83

Query: 554 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPE 613
            + L + + D N  +   ++G        +   +  +       V +  + + +      
Sbjct: 84  ENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCP 142

Query: 614 LDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELST 657
             + +    D   T   +    +++ M K     + + L     
Sbjct: 143 DLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARD 186

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 66.5 bits (161), Expect = 2e-11
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 370 VTVVEGKDLM---PKDKSGKCDPYVKLQYGKIV-QRTRTAHSPNH---VWNQKFELD-EI 421
           V V+    +      D     DPYV+L        R RT H  N    VWN+ FE   + 
Sbjct: 22  VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81

Query: 422 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVP 463
                L +   +     DE +G+A   +  +  G  +++   
Sbjct: 82  NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 123

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 503 IVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFPD----- 552
           ++  +DLV  D     +PYVK       +   K++TK+  KT NP +++ L +       
Sbjct: 26  VMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET 84

Query: 553 -DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 597
                L L V    +L  +  +G   +  +    ++   KW  L  
Sbjct: 85  LRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQKFE 417
             + + V+  KDL+ +D     +PYVK        +  K  ++T+ +  + N  +N+   
Sbjct: 20  GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSK--RKTKISRKTRNPTFNEMLV 76

Query: 418 LDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
                        L +   + E    +  +G   + L+          W  L 
Sbjct: 77  YSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQTLEFP-- 551
            I++AR+L A D+ GTSDPYVKV    L        KK+T    + LNP ++++  F   
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVW---LMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77

Query: 552 ---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQ 596
                 + + + V D + L  +  IG   + ++  P            P Q   +W  L+
Sbjct: 78  TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 416
           +   I V +++ ++L   D  G  DPYVK   +   K V++ +T     + N ++N+ F 
Sbjct: 14  SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFA 73

Query: 417 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 449
                 +L E      +++   +++    ++ +G   ++ 
Sbjct: 74  FDIPTEKLRET----TIIITVMDKDKLSRNDVIGKIYLSW 109

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 502 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF---PDD 553
           V+   R+L+A    G SDPYV++     +    +++T V  KTLNP + Q+ +F     +
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 554 GSPLTLH--VRDHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 596
               TL   V++    L+     +G  +V        +   +W  L 
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQK 415
              K+ V V   ++L+   + G  DPYV++       + G+  ++T  +  + N V++Q 
Sbjct: 22  QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGR--RKTHVSKKTLNPVFDQS 78

Query: 416 FE----LDEIGGGECLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLEK 466
           F+    L E+     L V   N   F   +   +G   V L           W  L +
Sbjct: 79  FDFSVSLPEV-QRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 68.6 bits (168), Expect = 8e-14
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 22/126 (17%)

Query: 502 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP----- 551
           VI+EA++L   D+ G SDPYVK+          KK+T +   TLNP ++++  F      
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 552 DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQGVR 599
                + + V D++ +  + +IG   V Y                P +   +W  LQ   
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 149

Query: 600 KGEIHV 605
           + +  +
Sbjct: 150 EVDAML 155

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 18/100 (18%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 416
           T  K+ V ++E K+L   D  G  DPYVK   +Q GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 417 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 449
                 ++ ++     ++V   + +  G ++ +G   V  
Sbjct: 83  FEVPFEQIQKV----QVVVTVLDYDKIGKNDAIGKVFVGY 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ----YGDLKKRTKVIFKTLNPQWHQTLEFP---DDGS 555
            +EA      +  G  D YV+       G ++ +T +  + L+  W + L  P   ++  
Sbjct: 32  RLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP 88

Query: 556 PLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
             TL   +R  +     S  G+  +          A +W  L+
Sbjct: 89  TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTAH-SPNHVWNQKFE--- 417
            ++ VT +E       +  G CD YV+       G +  +T       +  W +      
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 418 -LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTG 470
             +E+     L +     + F      G  R+ L+G         W  L+     
Sbjct: 83  AEEEL-PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEFP----- 551
           V+++AR L  +D+ G SDPYVKV          KK+T V   T N  +++   F      
Sbjct: 35  VVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 94

Query: 552 DDGSPLTLHVRDHNALLASSSIGDCVV 578
            +   +   V D      +  IG  V+
Sbjct: 95  LEEISVEFLVLDSERGSRNEVIGRLVL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 20/112 (17%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 416
           T   + V V++ + L   D SG  DPYVK       K + + +T     +PN V+N+ F 
Sbjct: 28  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87

Query: 417 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 461
                  L+EI     +     + E    +E +G  R+ L    EGS    W
Sbjct: 88  FDIPCESLEEI----SVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHW 133

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 503 IVEARDLVAA-------DLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF-- 550
           ++EARDL               S+PYVK+         K+T V  KT  P + +   F  
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 551 -PDDGSPLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
              +    TL   V D +       IG   V    +   +    W  L 
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 362 SRTGRKINVTVVEGKDLMP-------KDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNH 410
                 + V V+E +DL P       +      +PYVK+      K  ++T     +   
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKP 81

Query: 411 VWNQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
           V+ +++       E      L++   + + F     +G   V L  +        W  L 
Sbjct: 82  VFEERYTFEIPFLEA-QRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF---PDD 553
            I+    L A D  G SDP+VK+          K +T++  KTLNP++++   +     D
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 554 --GSPLTLHVRDHNALLASSSIGDCVV 578
                L + V D++   ++  IG C +
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 416
               + V ++    L   D +G  DP+VK           + +T     + N  +N++F 
Sbjct: 35  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 94

Query: 417 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 464
                 +L +      L +  ++ +I   ++ +G  ++ +    E      W   
Sbjct: 95  YDIKHSDLAKK----SLDISVWDYDIGKSNDYIGGCQLGISAKGER--LKHWYEC 143

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 70.3 bits (171), Expect = 9e-13
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--- 551
           G   + +    A  L        +D Y+KV +G  + RT V++   NP+W   ++F    
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450

Query: 552 -DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 605
              G PL + V D +       +G C             +    L     G +  
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSG----FHEVTCELN---HGRVKF 498

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD--EI 421
              + V+    + L     +   D Y+K+ +G    RT    + N+  W  K + +   +
Sbjct: 393 LAHLVVSNFRAEHLWGDY-TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451

Query: 422 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 479
             G  L V+ ++ +    D+ +GS   +      G   ++   L   N G ++    A 
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSCDRSPH---SGFH-EVTCEL---NHGRVKFSYHAK 503

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 503 IVEARDLVAADLRG-TSDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF----PDDG 554
           I EAR L A D +  TSDPY+K+        K +T+V+ KTL+P + +T  F        
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 555 SPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQ 587
             L LH      +       IG+ ++    +  ++
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGK-CDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFEL 418
             +   V + E + L   D+     DPY+K+      K   +TR    + +  +++ F  
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 419 DEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 452
             I   +     L     + + F  D+ +G   + L G+
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQ------YGDLKKRTKVIFKTLNPQWHQTLEFP---DD 553
           I++  +L A   +      ++V             RT+ +  +    +++          
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 554 GSPLTLHV 561
               TL V
Sbjct: 109 LHQKTLRV 116

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTA---HSPNHVWNQKF 416
             ++  + +++  +L    +       +++             RT     S   V+N+ F
Sbjct: 41  KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100

Query: 417 E----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPL 464
                   +     L V     +    +E +G A+++L  +   G     W  L
Sbjct: 101 WVSMSYPALHQKT-LRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 369 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLM 428
            V V + K    ++K    + YV L+   +   T         W Q F  +       L 
Sbjct: 8   CVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLT 64

Query: 429 VKCYNEEIFGDENMGSARVNLEGLVEGSVR--DIWVPLEK 466
           V+ +N+ +  D  +G+  + L  + + +      W+ L+ 
Sbjct: 65  VEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 560
           + +A+       +   + YV ++  ++K  T  + +   P W Q   F        LT+ 
Sbjct: 11  VKKAKFD---GAQEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 66

Query: 561 VRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQG---VRKGEI 603
           V +   L+  + +G   +  + +     +   +W+ L     +   EI
Sbjct: 67  VWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEI 113

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 511 AADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP-QWHQTLEF-----PDDGSPLTLHVRDH 564
            ++LRG +D   KV +      ++V+    +   + +T  +      D    L + + ++
Sbjct: 30  VSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY 89

Query: 565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
           + + ++  IG   +  Q++      +    L       I   ++
Sbjct: 90  SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLS 133

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHV-WNQKFELD-- 419
           +   + V +    +L      G+ D   K+ +      +R   +  +   +++ F     
Sbjct: 19  SHMALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVA 73

Query: 420 -EIGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 477
             I   E L ++ +N   +F ++ +G+ R+ L+ +VE +  ++   L   N   ++  + 
Sbjct: 74  SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 86/586 (14%), Positives = 173/586 (29%), Gaps = 159/586 (27%)

Query: 192 GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNM 247
            S            +L    +++ +  FVE  L      L           P   SM   
Sbjct: 56  MSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQP---SM-MT 109

Query: 248 VLHEETGTVRFNLYECI-PGHV----KYDYLTSCEVKMKYVADDSTTFWAIGPDSGII-- 300
            ++ E     +N  +     +V     Y  L    ++++             P   ++  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-------------PAKNVLID 156

Query: 301 -----AKH---AEFCGDE-VEMTVPFEG--VNSGEL-TVRLVLKEWQFSDGSHSLNNFHS 348
                 K     + C    V+  + F+   +N     +   VL+          L     
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---------LQKLLY 207

Query: 349 GSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVK-LQYGKIVQRTRTAHS 407
               + +  S+  S    +I+    E + L+ K K     PY   L    +V        
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSK-----PYENCL----LVLL------ 251

Query: 408 PNHVWNQK----FELDEIGGGEC-LMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 462
             +V N K    F L       C +++    +++  D    +   ++      S+    +
Sbjct: 252 --NVQNAKAWNAFNL------SCKILLTTRFKQVT-DFLSAATTTHI------SLDHHSM 296

Query: 463 PLEKVNTGELRLQIEATRVDD--NEGSRGQNIGSGNGWIELVIVEARDLVAADLR---GT 517
            L       L L+    R  D   E                 +     ++A  +R    T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT---------NPRRL----SIIAESIRDGLAT 343

Query: 518 SDPYVKVQYGDLKKRTKVIFKTLNP----QWHQTLE-FPDDGSPLTLHVRDHNALLASSS 572
            D +  V    L    +     L P    +    L  FP   + +   +    +L+    
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILL---SLIWFDV 399

Query: 573 IGDCVVEY-QRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSI----------- 620
           I   V+    +L    + +K      +    I  +      +L+   ++           
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 621 ---DSDSSSTRA-----------HKISGQMKQMMVKFQSLIDDDN-----LEELSTAL-- 659
              DSD                 H  + +  + M  F+ +  D       +   STA   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 660 --SELETLEDSQ--EEYMVQLET--EQML--LLNKIKELGQEIINS 697
             S L TL+  +  + Y+   +   E+++  +L+ + ++ + +I S
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 44/267 (16%), Positives = 74/267 (27%), Gaps = 77/267 (28%)

Query: 12  KHRKPRLIEKIELQEFSLGSTSPC--LGLHGTRWSSSG----------DQRVMQLGFD-- 57
           K+   RL   ++L++ +L    P   + + G     SG            +V Q   D  
Sbjct: 128 KYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKV-QCKMDFK 183

Query: 58  --WDANDISI-------LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFV 108
             W    +++        +L  L K LL        S       + + I   +A L   +
Sbjct: 184 IFW----LNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 109 SIP----------DV---RIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPR 155
                        +V   +   AF     + L  T    V++    L   T     ++  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTD---FLSAATTTHISLDHH 294

Query: 156 RRCYSLP-AVDLRKKAVGGIVYVRVISASKLSRSSLRGSP-------------SRRQQNY 201
               +      L  K +             L R  L  +P                  N+
Sbjct: 295 SMTLTPDEVKSLLLKYLD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 202 SADSSLEEHYEDKDLTTFVEIELEELT 228
                  +H     LTT +E  L  L 
Sbjct: 348 -------KHVNCDKLTTIIESSLNVLE 367

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 425
             + V V + K    ++K    + YV L+   +   T         W Q F  +      
Sbjct: 14  SLLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDL 70

Query: 426 CLMVKCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEK 466
            L V+ +N+ +  D  +G+  + L  +          W+ L+ 
Sbjct: 71  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 113

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 560
           + +A+   A +     + YV ++  +++  T  + +   P W Q   F        LT+ 
Sbjct: 20  VKKAKFDGAQEK---FNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 75

Query: 561 VRDHNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITRKVPELDKRT 618
           V +   L+  + +G   +  + +     +   +W+ L                 +     
Sbjct: 76  VWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD---------------SQAIMAD 119

Query: 619 SIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDS 668
           S    +     H+I   +     +    I ++     +  L +L    +S
Sbjct: 120 SEICGTKDPTFHRI---LLDAHFELPLDIPEEEARYWAKKLEQLNAKLNS 166

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 363 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAHSPNHVWNQKFE 417
           R    + + ++E ++L PK        Y +L      Y +   + R+A      W + FE
Sbjct: 8   RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFE 62

Query: 418 LDEIGGGECLMVKCYNEEIFG-----DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 472
            + +     L +  Y +            +G   V +  L      + W P+        
Sbjct: 63  FNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGG 122

Query: 473 RLQIEATRVDDNEGSRGQNIGSGNG 497
              + +     + G  G     G  
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCP 147

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 25/221 (11%), Positives = 59/221 (26%), Gaps = 23/221 (10%)

Query: 498 WIELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTL---NPQWHQTLEFPDD 553
            ++L I+EAR+L           Y ++     L  RT    ++       W +  EF + 
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 554 GSPLTL------HVRDHNALLASSSIGDCVVEYQRLPPNQMADKWI----PLQGVRKGEI 603
            +   L                +  +G   V    L      ++W     P      G +
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGM 126

Query: 604 HVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLID--DDNLEELSTALSE 661
                                +     +        M  ++   +   ++   L   L  
Sbjct: 127 GSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAVLEP 186

Query: 662 LETLEDSQE--EYMVQLETEQMLLLNKIKELGQEIINSSPS 700
              ++  +E    +V +        + + ++    ++    
Sbjct: 187 ALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFME 227

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP- 551
            SG G + + ++EA +L A    G S+PY ++  G     T+ I  TLNP+W+   +F  
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442

Query: 552 --DDGSPLTLHVRDHNALLASSSIGDCVVEYQRL----PPNQMADKWIPLQGVRKGEIHV 605
                  L L + D +       +G   +   ++           + + L  V  GE+ V
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWV 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	713
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.95
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.83
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.82
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.82
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.82
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.82
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.82
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.81
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.81
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.81
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.81
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.8
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.8
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.8
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.8
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.8
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.79
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.79
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.79
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.78
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.78
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.78
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.78
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.78
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.76
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.75
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.74
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.74
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.74
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.74
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.74
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.74
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.73
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.71
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.69
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.67
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.67
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.66
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.66
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.65
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.65
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.65
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.65
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.64
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.64
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.63
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.63
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.62
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.62
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.62
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.62
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.62
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.61
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.59
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.59
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.59
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.59
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.58
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.58
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.56
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.55
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.55
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.53
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.52
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.48
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.48
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.47
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.46
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.46
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.44
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.36
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.29
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.26
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.26
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.22
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.09
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.07
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.99
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.98
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.91
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.87
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.79
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.78
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.77
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.76
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.65
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	92.43
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	85.27
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	84.25
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	84.13

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=2.9e-33  Score=293.02  Aligned_cols=219  Identities=26%  Similarity=0.453  Sum_probs=195.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|++|+.++..|.+||||+++++   ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~   98 (284)
T 2r83_A           19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS   98 (284)
T ss_dssp             TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC
Confidence            5899999999999999989999999999994   458899999 999999999999997653   57999999999988 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceec------ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccc
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA  511 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~  511 (713)
                      +|++||++.++|.++..+.....|++|...      ..|+|.+++.|.              +..+.|.|.|++|++|++
T Consensus        99 ~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~--------------p~~~~l~v~v~~a~~L~~  164 (284)
T 2r83_A           99 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV--------------PTAGKLTVVILEAKNLKK  164 (284)
T ss_dssp             CCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCC
T ss_pred             CCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec--------------CcCCceEEEEEEeECCCC
Confidence            799999999999999888888899999753      369999999998              567899999999999999


Q ss_pred             cccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEce
Q 005132          512 ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ  581 (713)
Q Consensus       512 ~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~  581 (713)
                      .+..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.+++.
T Consensus       165 ~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~  244 (284)
T 2r83_A          165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN  244 (284)
T ss_dssp             CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETT
T ss_pred             cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCC
Confidence            99999999999999942     4679999999999999999999984     3469999999999999999999999997


Q ss_pred             ec------------CCCCceeeEEEcCCC
Q 005132          582 RL------------PPNQMADKWIPLQGV  598 (713)
Q Consensus       582 ~l------------~~~~~~~~w~~L~~~  598 (713)
                      .+            .++.+..+||+|.+.
T Consensus       245 ~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          245 STGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            52            355678899999853

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.7e-32  Score=288.96  Aligned_cols=219  Identities=27%  Similarity=0.432  Sum_probs=190.4

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|++|+.++..|.+||||++++   +++.++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~   99 (296)
T 1dqv_A           20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   99 (296)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCC
Confidence            589999999999999999999999999999   5678999999 999999999999997643   45899999999988 


Q ss_pred             CCceeEEEEEe-cccccc-CCeeeeeeeceec-----ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcc
Q 005132          438 GDENMGSARVN-LEGLVE-GSVRDIWVPLEKV-----NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLV  510 (713)
Q Consensus       438 ~d~~lG~~~i~-l~~l~~-~~~~~~w~~L~~~-----~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~  510 (713)
                      +|++||++.++ +.++.. ......|++|...     ..|+|.+++.|.              +..+.|+|.|++|++|+
T Consensus       100 ~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~--------------~~~~~l~v~v~~a~~L~  165 (296)
T 1dqv_A          100 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYL--------------PTAGLLTVTIIKASNLK  165 (296)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCC
T ss_pred             CCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEec--------------cccceeEEEEEEeecCC
Confidence            89999999996 555543 3345679999652     369999999998              56799999999999999


Q ss_pred             ccccCCCCCcEEEEEEC--C---eEEEEEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEc
Q 005132          511 AADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEY  580 (713)
Q Consensus       511 ~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L  580 (713)
                      ++|..|.+||||++++.  +   .+++|+++++|+||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.|++
T Consensus       166 ~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l  245 (296)
T 1dqv_A          166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP  245 (296)
T ss_dssp             CCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSS
T ss_pred             ccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECC
Confidence            99999999999999996  2   4789999999999999999999985     347999999999999999999999998


Q ss_pred             eecC-------------CCCceeeEEEcCCC
Q 005132          581 QRLP-------------PNQMADKWIPLQGV  598 (713)
Q Consensus       581 ~~l~-------------~~~~~~~w~~L~~~  598 (713)
                      ..+.             ++.+..+|++|.+.
T Consensus       246 ~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          246 EAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             ccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            8653             45678889999753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=5e-29  Score=260.82  Aligned_cols=228  Identities=19%  Similarity=0.270  Sum_probs=179.4

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeC----cEEEEeecCCCCCCcccceEEE
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM  247 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g----~~~~tt~i~~~~nP~WnEtf~~  247 (713)
                      .|.|.|+|++|++|+..|..|.+                      ||||+|.++    ...+|++++++.||+|||+|.|
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~----------------------dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f   75 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF   75 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSC----------------------CEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCC----------------------CeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEE
Confidence            49999999999999988876654                      999999994    3556777889999999999999


Q ss_pred             EEecC---CceEEEEEEEeCCCCCccceeEEEEEEcccccCCccceeecCCCCccccccccccCCeeeeeeccCCcceee
Q 005132          248 VLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGE  324 (713)
Q Consensus       248 ~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  324 (713)
                      .+...   ...|.|+|||+|. ..++++||++.++|.++.....           ...|+.+......     .....|+
T Consensus        76 ~v~~~~~~~~~l~~~V~d~d~-~~~~~~lG~~~i~l~~l~~~~~-----------~~~w~~L~~~~~~-----~~~~~G~  138 (284)
T 2r83_A           76 KVPYSELAGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQSAEKE-----EQEKLGD  138 (284)
T ss_dssp             CCCGGGCTTCEEEEEEEECCS-SSCCCEEEEEEEEGGGCCCSSC-----------EEEEEECBCCSSC-----CCCCCCE
T ss_pred             EechHHhCcCEEEEEEEECCC-CCCCceeEEEEEcchhcccCCc-----------ceeEEEeeccccc-----ccccccc
Confidence            98653   5799999999997 3688999999999999875321           2344433221100     1123588


Q ss_pred             EEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eE
Q 005132          325 LTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IV  399 (713)
Q Consensus       325 l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~  399 (713)
                      +.+.+.+.                         |     ..+.|.|.|++|++|+..+..|.+||||++++.  +   .+
T Consensus       139 i~l~l~~~-------------------------p-----~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~  188 (284)
T 2r83_A          139 ICFSLRYV-------------------------P-----TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK  188 (284)
T ss_dssp             EEEEEEEE-------------------------T-----TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEec-------------------------C-----cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeee
Confidence            87665432                         0     125899999999999999999999999999983  2   47


Q ss_pred             EeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCceeEEEEEeccccc------------cCCeeeeee
Q 005132          400 QRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLV------------EGSVRDIWV  462 (713)
Q Consensus       400 ~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~------------~~~~~~~w~  462 (713)
                      ++|+++ ++.||.|||+|.|.+..+   ...|.|+|||++.+ ++++||++.+++..+.            .+.....|+
T Consensus       189 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~  268 (284)
T 2r83_A          189 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWH  268 (284)
T ss_dssp             EECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEE
T ss_pred             eccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheee
Confidence            899999 999999999999998664   45899999999988 8999999999997632            234567899


Q ss_pred             eceecc
Q 005132          463 PLEKVN  468 (713)
Q Consensus       463 ~L~~~~  468 (713)
                      +|....
T Consensus       269 ~L~~~~  274 (284)
T 2r83_A          269 TLQVEE  274 (284)
T ss_dssp             ECBCHH
T ss_pred             ecCCcc
Confidence            998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.95  E-value=4e-28  Score=255.47  Aligned_cols=226  Identities=19%  Similarity=0.270  Sum_probs=174.3

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEe---C-cEEEEeecCCCCCCcccceEEE
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---E-ELTRRTDARPGSDPRWDSMFNM  247 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~---g-~~~~tt~i~~~~nP~WnEtf~~  247 (713)
                      .|.|.|+|++|++|+..|..|.+                      ||||+|.+   + ...+|+++++++||+|||+|.|
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~----------------------dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f   76 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFS----------------------DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF   76 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCC----------------------CEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCCc----------------------CeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEE
Confidence            49999999999999998876654                      99999999   3 4567777889999999999999


Q ss_pred             EEecC---CceEEEEEEEeCCCCCccceeEEEEEE-cccccCCccceeecCCCCccccccccccCCeeeeeeccCCccee
Q 005132          248 VLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVK-MKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSG  323 (713)
Q Consensus       248 ~v~~~---~~~L~~~v~d~d~~~~~dd~lG~~~i~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  323 (713)
                      .+...   ...|.|+|||+|. ..++|+||++.++ +.++.+...          ....|+.+....      -.....|
T Consensus        77 ~v~~~~l~~~~L~~~V~d~d~-~~~~~~iG~~~i~~l~~~~~~~~----------~~~~w~~L~~~~------~~~~~~G  139 (296)
T 1dqv_A           77 SVPLAELAQRKLHFSVYDFDR-FSRHDLIGQVVLDNLLELAEQPP----------DRPLWRDILEGG------SEKADLG  139 (296)
T ss_dssp             ECCGGGGSSCCCEEEEEECCS-SSCCCEEEEEECCCTTGGGSSCS----------SCCCCEECBCCS------SCCSCCC
T ss_pred             EecHHHhcCCEEEEEEEEcCC-CCCCceEEEEEeccccccccCCc----------cceeeecccccc------ccccccc
Confidence            98643   4599999999997 4689999999995 544443110          122343332210      0122458


Q ss_pred             eEEEEEEEeeeccCCCCCCCCCCcCCCCcccccCCCcCcCCccEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---e
Q 005132          324 ELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---I  398 (713)
Q Consensus       324 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~  398 (713)
                      ++.+.+.+..                              ..|.|.|+|++|++|+.++..|.+||||++++.  +   .
T Consensus       140 ~i~vsl~y~~------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~  189 (296)
T 1dqv_A          140 ELNFSLCYLP------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK  189 (296)
T ss_dssp             EEEEEEEEET------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS
T ss_pred             eEEEEEEecc------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCcc
Confidence            8887664321                              125899999999999999999999999999994  2   5


Q ss_pred             EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-CCceeEEEEEecccccc-------------CCeeee
Q 005132          399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLVE-------------GSVRDI  460 (713)
Q Consensus       399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~-------------~~~~~~  460 (713)
                      +++|+++ ++.||.|||+|.|.+..+   ...|.|+|||++.+ ++++||.+.+++..+..             +.....
T Consensus       190 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~  269 (296)
T 1dqv_A          190 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEH  269 (296)
T ss_dssp             CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCS
T ss_pred             ceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeE
Confidence            7899999 999999999999997664   35799999999988 89999999999987642             224456


Q ss_pred             eeecee
Q 005132          461 WVPLEK  466 (713)
Q Consensus       461 w~~L~~  466 (713)
                      |++|..
T Consensus       270 w~~L~~  275 (296)
T 1dqv_A          270 WHQLVE  275 (296)
T ss_dssp             CCCCBB
T ss_pred             eeeccC
Confidence            777765

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=7.3e-20  Score=170.14  Aligned_cols=119  Identities=27%  Similarity=0.413  Sum_probs=107.5

Q ss_pred             CCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCC
Q 005132          494 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNAL  567 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~D~d~~  567 (713)
                      ...+.|+|+|++|++|+..+. |.+||||++++++++++|+++++|+||+|||+|.|.+.      ...|.|+|||+|.+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            456899999999999999998 99999999999999999999999999999999999983      57899999999999


Q ss_pred             CCCCeeEEEEEEceecCCCCceeeEEE---cCCC----CCcEEEEEEEEEecCC
Q 005132          568 LASSSIGDCVVEYQRLPPNQMADKWIP---LQGV----RKGEIHVLITRKVPEL  614 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~~~~~~~~w~~---L~~~----~~G~i~~~l~~~~p~~  614 (713)
                      ++|++||++.|+|.++..+.....|++   |.+.    ..|+|+++++| .|.+
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~-~p~~  135 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGY-DPPS  135 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEE-CCCB
T ss_pred             CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEE-ECCC
Confidence            999999999999999988888899988   6443    24999999999 6644

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=3.5e-20  Score=175.25  Aligned_cols=115  Identities=10%  Similarity=0.151  Sum_probs=105.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLN  541 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~n  541 (713)
                      ..|+|++++.|.              +..+.|+|.|++|+||+++|..|.+||||++++.+      .++||+++++|+|
T Consensus        28 ~~G~l~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tln   93 (155)
T 2z0u_A           28 GATRIQIALKYD--------------EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDT   93 (155)
T ss_dssp             CCEEEEEEEEEE--------------TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSS
T ss_pred             CcEEEEEEEEEc--------------CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCC
Confidence            469999999998              67899999999999999999999999999999965      2789999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecC-CCCceeeEEEcC
Q 005132          542 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP-PNQMADKWIPLQ  596 (713)
Q Consensus       542 P~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~-~~~~~~~w~~L~  596 (713)
                      |+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++. .+....+||+|.
T Consensus        94 P~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A           94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            999999999985     4789999999999999999999999999996 467789999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=176.11  Aligned_cols=115  Identities=24%  Similarity=0.390  Sum_probs=103.0

Q ss_pred             CCCCceEEEEEEEccCcccccc----------CCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC-CCeEEEE
Q 005132          493 GSGNGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLH  560 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~  560 (713)
                      ....|.|+|+|++|++|+++|.          .|.+||||++.+++++ .+|+++++|+||+|||+|.|.+. ...|.|+
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~  104 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELA  104 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCCCEEEEE
Confidence            3567999999999999998873          3689999999999875 69999999999999999999984 5789999


Q ss_pred             EEECCCCCCCCeeEEEEEEceecCCC----CceeeEEEcCCCCCcEEEEEEEE
Q 005132          561 VRDHNALLASSSIGDCVVEYQRLPPN----QMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       561 V~D~d~~~~d~~iG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      |||+|.+++|++||++.|+|.++..+    .....||+|.  +.|.|++.++|
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--~~G~i~l~l~~  155 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--PEGKVFVVITL  155 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--SSCEEEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC--CCcEEEEEEEE
Confidence            99999999999999999999988643    6789999997  48999999987

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=9.5e-20  Score=169.64  Aligned_cols=118  Identities=30%  Similarity=0.455  Sum_probs=107.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCee
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQW  544 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~w  544 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++.   ..+++|+++++|+||+|
T Consensus        11 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w   76 (141)
T 2d8k_A           11 NLGRIQFSVGYN--------------FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW   76 (141)
T ss_dssp             CCCEEEEEEEEC--------------SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCC
T ss_pred             eeeEEEEEEEEe--------------CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCcc
Confidence            369999999998              6779999999999999999999999999999994   35889999999999999


Q ss_pred             eeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC
Q 005132          545 HQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  599 (713)
Q Consensus       545 ne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  599 (713)
                      ||+|.|.+      ....|.|+|||+|.+++|++||++.++|.++..+.....||+|.+..
T Consensus        77 ne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A           77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             CEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             ccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            99999985      25789999999999999999999999999998888899999997544

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=1.6e-19  Score=170.46  Aligned_cols=118  Identities=31%  Similarity=0.445  Sum_probs=108.4

Q ss_pred             cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCe
Q 005132          467 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       467 ~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~  543 (713)
                      ...|+|++++.|.              +..+.|+|+|++|++|+..+..+.+||||++++.   ..+++|+++++|+||+
T Consensus        26 ~~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~   91 (152)
T 1rsy_A           26 EKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV   91 (152)
T ss_dssp             CCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCE
T ss_pred             CCceEEEEEEEEe--------------CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCc
Confidence            3469999999998              6779999999999999999999999999999994   4578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+....+||+|.+.
T Consensus        92 wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           92 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             EEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            9999999984     578999999999999999999999999999888889999999753

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=5e-20  Score=169.74  Aligned_cols=119  Identities=24%  Similarity=0.433  Sum_probs=108.3

Q ss_pred             CCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCC
Q 005132          489 GQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA  566 (713)
Q Consensus       489 ~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~  566 (713)
                      ...+....+.|+|+|++|++|++.+..|.+||||++++++++++|+++++|+||+|||+|.|.+.  ...|.|+|||+|.
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~   84 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDG   84 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEET
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCC
Confidence            34567889999999999999999999999999999999999999999999999999999999984  5789999999999


Q ss_pred             CCCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEE
Q 005132          567 LLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  609 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~  609 (713)
                      +++|++||++.++|.++..+.  .+|++|..     ...|+|+++++|
T Consensus        85 ~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~  130 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL  130 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             CCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEE
Confidence            999999999999999997654  58999963     356999999998

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=1e-19  Score=166.67  Aligned_cols=113  Identities=26%  Similarity=0.466  Sum_probs=98.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++     +..+++|+++++|+||+
T Consensus         4 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~   69 (129)
T 2bwq_A            4 SGQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK   69 (129)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCE
T ss_pred             eEEEEEEEEEc--------------cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCc
Confidence            59999999998              677999999999999999999999999999999     34689999999999999


Q ss_pred             eeeEEEEec-C-----CCeEEEEEEECCCCCC--CCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          544 WHQTLEFPD-D-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v-~-----~~~l~i~V~D~d~~~~--d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+ .     ...|.|+|||+|.+++  |++||++.++|.++.... ..+||+|+
T Consensus        70 wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           70 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            999999995 2     4789999999999987  999999999999987654 88999985

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.82  E-value=1.8e-19  Score=168.19  Aligned_cols=116  Identities=32%  Similarity=0.468  Sum_probs=107.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE---CCeEEEEEeeeCCCCCee
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQW  544 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~v~~~t~nP~w  544 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|+..+..+.+||||++++   +..+++|+++++|+||+|
T Consensus        19 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~w   84 (143)
T 3f04_A           19 KLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF   84 (143)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEE
T ss_pred             CeEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcC
Confidence            469999999998              778999999999999999999999999999999   445889999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          545 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       545 ne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      ||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+.....|++|+.
T Consensus        85 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             cCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999984     47899999999999999999999999999998888999999974

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.81  E-value=4.6e-20  Score=170.64  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=108.8

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLA  569 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~  569 (713)
                      ....+.|+|+|++|++|++.+..|.+||||++++++++++|++++ +++||+|||+|.|.+.  ...|.|+|||+|.+++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            457799999999999999999999999999999999999999998 8999999999999984  6789999999999999


Q ss_pred             CCeeEEEEEEceec-CCCCceeeEEEcC--CCCCcEEEEEEEEEecCC
Q 005132          570 SSSIGDCVVEYQRL-PPNQMADKWIPLQ--GVRKGEIHVLITRKVPEL  614 (713)
Q Consensus       570 d~~iG~~~i~L~~l-~~~~~~~~w~~L~--~~~~G~i~~~l~~~~p~~  614 (713)
                      |++||++.|+|.++ ..+....+||+|.  +...|+|+++++| .|..
T Consensus        86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~-~p~~  132 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSF-KPSG  132 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEE-EECC
T ss_pred             CceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEE-EeCC
Confidence            99999999999998 4455678999996  3456999999999 6654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.81  E-value=1.5e-19  Score=170.81  Aligned_cols=120  Identities=28%  Similarity=0.399  Sum_probs=99.2

Q ss_pred             CCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEE
Q 005132          492 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRD  563 (713)
Q Consensus       492 ~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D  563 (713)
                      .....+.|+|+|++|++|++.+..|.+||||++++++      .+++|+++++|+||+|||+|.|.+.  ...|.|+|||
T Consensus        15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            3567899999999999999999889999999999974      5789999999999999999999984  5689999999


Q ss_pred             CCCCCCCCeeEEEEEEceecCCCCc------eeeEEEcCC-----CCCcEEEEEEEEEec
Q 005132          564 HNALLASSSIGDCVVEYQRLPPNQM------ADKWIPLQG-----VRKGEIHVLITRKVP  612 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~~~~------~~~w~~L~~-----~~~G~i~~~l~~~~p  612 (713)
                      +|.+++|++||++.|+|.++..+..      ..+||+|..     ...|+|+++++| +|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~-~P  153 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY-LP  153 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE-CC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE-eC
Confidence            9999999999999999999975543      259999964     346999999998 54

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.81  E-value=3.4e-19  Score=167.30  Aligned_cols=114  Identities=32%  Similarity=0.534  Sum_probs=103.6

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-----  567 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~-----  567 (713)
                      ..+.|+|+|++|++|++.+..|.+||||++++++++++|+++++|+||.|||+|.|.+.  ...|.|+|||+|..     
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~   94 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRV   94 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccc
Confidence            46999999999999999999999999999999999999999999999999999999983  57899999999986     


Q ss_pred             ------CCCCeeEEEEEEceecCCCCceeeEEEcCC-----CCCcEEEEEEEEE
Q 005132          568 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRK  610 (713)
Q Consensus       568 ------~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~~~l~~~  610 (713)
                            ++|++||++.++|.++  .....+|++|..     ...|+|+++++|.
T Consensus        95 ~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           95 KQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  8899999999999999  345789999973     3569999999983

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=1.2e-19  Score=165.54  Aligned_cols=113  Identities=20%  Similarity=0.362  Sum_probs=101.6

Q ss_pred             CceEEEEEEEccCccc---cccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 005132          496 NGWIELVIVEARDLVA---ADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA  566 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~---~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~  566 (713)
                      .+.|+|+|++|++|++   .+..|.+||||++++++   .+++|+++++|+||+|||+|.|.+.   ...|.|+|||+|.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5789999999999998   46778999999999985   6889999999999999999999983   5789999999998


Q ss_pred             CCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          567 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ++ |++||++.++|.++..+.....|++|.+...|+|+++++-
T Consensus        82 ~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           82 VM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             SC-CEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CC-CceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence            74 8999999999999998889999999998777777777764

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.80  E-value=7.6e-20  Score=171.82  Aligned_cols=118  Identities=22%  Similarity=0.348  Sum_probs=105.9

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEECC-----eEEEEEeeeCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLN  541 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~n  541 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+ ..|.+||||++++.+     .+++|+++++|+|
T Consensus         8 ~~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~n   73 (148)
T 3fdw_A            8 VTGRIAFSLKYE--------------QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVN   73 (148)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSS
T ss_pred             cceEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCC
Confidence            369999999998              67899999999999999988 688999999999963     4789999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC
Q 005132          542 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  599 (713)
Q Consensus       542 P~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  599 (713)
                      |+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+....+||+|.++.
T Consensus        74 P~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           74 PLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             CEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            999999999984     3469999999999999999999999999998777788999998643

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.80  E-value=4.2e-19  Score=163.79  Aligned_cols=106  Identities=24%  Similarity=0.359  Sum_probs=93.9

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCCeeeeEEEEe-cC-----CCeEEEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFP-DD-----GSPLTLHVRD  563 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~-v~-----~~~l~i~V~D  563 (713)
                      ..+.|+|+|++|++|+. +..|.+||||++++     ...+++|+++++|+||+|||+|.|. +.     ...|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            36999999999999997 77899999999999     3467899999999999999999999 64     5799999999


Q ss_pred             CCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCc
Q 005132          564 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKG  601 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  601 (713)
                      +|.+++|++||++.++|.++..+....+||+|.+...|
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            99999999999999999999888889999999875543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.80  E-value=2.4e-19  Score=169.33  Aligned_cols=120  Identities=23%  Similarity=0.361  Sum_probs=105.1

Q ss_pred             cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCC
Q 005132          467 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLN  541 (713)
Q Consensus       467 ~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~n  541 (713)
                      ...|++.+++.|.              +..+.|+|+|++|++|++.+ .|.+||||++++.     ..+++|+++++|+|
T Consensus        11 ~~~G~~~lsL~y~--------------~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~n   75 (153)
T 3fbk_A           11 KVQGAGQLRLSID--------------AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRD   75 (153)
T ss_dssp             --CCCCEEEEEEE--------------ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSS
T ss_pred             CCCCEEEEEEEEE--------------CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCC
Confidence            3479999999998              67799999999999999998 6899999999993     35789999999999


Q ss_pred             CeeeeEEEEecC----CCeEEEEEEECCCCCC-CCeeEEEEEEceecCC-CCceeeEEEcCCCCCc
Q 005132          542 PQWHQTLEFPDD----GSPLTLHVRDHNALLA-SSSIGDCVVEYQRLPP-NQMADKWIPLQGVRKG  601 (713)
Q Consensus       542 P~wne~~~f~v~----~~~l~i~V~D~d~~~~-d~~iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G  601 (713)
                      |+|||+|.|.+.    ...|.|+|||+|.+++ |++||++.++|.++.. +.....||+|.+...|
T Consensus        76 P~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A           76 PAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             CEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            999999999982    4579999999999887 9999999999999974 7788999999876544

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=1.3e-19  Score=168.61  Aligned_cols=119  Identities=25%  Similarity=0.447  Sum_probs=106.3

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++     ...+++|+++++|+||
T Consensus         6 ~~G~i~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP   71 (141)
T 1v27_A            6 SGGQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP   71 (141)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSC
T ss_pred             cccEEEEEEEEe--------------CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCC
Confidence            469999999998              667999999999999999999999999999999     3468899999999999


Q ss_pred             eeeeEEEEec-C-----CCeEEEEEEECCCCCC--CCeeEEEEEEceecCCCCceeeEEEcCCCCCc
Q 005132          543 QWHQTLEFPD-D-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKG  601 (713)
Q Consensus       543 ~wne~~~f~v-~-----~~~l~i~V~D~d~~~~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  601 (713)
                      +|||+|.|.+ .     ...|.|+|||+|.+++  |++||++.|+|.++.... ..+||+|.+...|
T Consensus        72 ~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A           72 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             CCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             ccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            9999999994 2     4789999999999987  999999999999987654 8899999865544

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=3.8e-19  Score=164.93  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=102.8

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---C-eEEEEEeeeCCCCCe
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---D-LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~-~~~kT~v~~~t~nP~  543 (713)
                      ..|+|++++.|.              ...+.|+|+|++|+   ++|..|.+||||++++.   + .+++|+++++|+||+
T Consensus        11 ~~G~l~~sl~y~--------------~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~   73 (138)
T 1wfm_A           11 QAPKLHYCLDYD--------------CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT   73 (138)
T ss_dssp             SCCEEEEEEEEE--------------TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE
T ss_pred             cceEEEEEEEEe--------------CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCc
Confidence            359999999998              67799999999999   46788999999999994   2 368999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  599 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  599 (713)
                      |||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+....+|++|.+..
T Consensus        74 wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            9999999984     4689999999999999999999999999998777889999998644

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.79  E-value=6.6e-19  Score=170.44  Aligned_cols=120  Identities=28%  Similarity=0.395  Sum_probs=97.8

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEEC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDH  564 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~  564 (713)
                      ....+.|+|+|++|++|++.+..|.+||||++++++      .+++|+++++++||+|||+|.|.+.  ...|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            456799999999999999999999999999999975      5789999999999999999999984  56899999999


Q ss_pred             CCCCCCCeeEEEEEEceecCCCCce------eeEEEcCC-----CCCcEEEEEEEEEecC
Q 005132          565 NALLASSSIGDCVVEYQRLPPNQMA------DKWIPLQG-----VRKGEIHVLITRKVPE  613 (713)
Q Consensus       565 d~~~~d~~iG~~~i~L~~l~~~~~~------~~w~~L~~-----~~~G~i~~~l~~~~p~  613 (713)
                      |.+++|++||++.|+|..+..+...      .+||+|..     ...|+|+++++| +|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~-~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTY-LPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEE-CC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEE-EeC
Confidence            9999999999999999999765432      28999974     246999999999 775

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.79  E-value=6.7e-19  Score=164.07  Aligned_cols=116  Identities=28%  Similarity=0.404  Sum_probs=107.0

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++.+     .+++|+++++|+||
T Consensus        14 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   79 (142)
T 2chd_A           14 TLGALEFSLLYD--------------QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP   79 (142)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSC
T ss_pred             ccceEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCC
Confidence            469999999998              66799999999999999999999999999999975     68899999999999


Q ss_pred             eeeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          543 QWHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       543 ~wne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      +|||+|.|. +.     ...|.|+|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus        80 ~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             cCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999998 53     37899999999999999999999999999998888999999875

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=5.9e-19  Score=164.44  Aligned_cols=116  Identities=26%  Similarity=0.417  Sum_probs=104.3

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..| +||||++++.+     .+++|+++++|+||
T Consensus         9 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   73 (142)
T 2dmg_A            9 PLGQIQLTIRHS--------------SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP   73 (142)
T ss_dssp             SSCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSC
T ss_pred             CcceEEEEEEEe--------------CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCC
Confidence            369999999998              67799999999999999999888 99999999943     57899999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCC--CCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      +|||+|.|.+.     ...|.|+|||+|.++.  |++||++.|+|..+..+....+||+|.+.
T Consensus        74 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           74 VFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             EEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            99999999984     3689999999998864  57999999999999877788999999754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=1.3e-19  Score=168.84  Aligned_cols=116  Identities=33%  Similarity=0.514  Sum_probs=104.7

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCe--------------EEEE
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL--------------KKRT  533 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~--------------~~kT  533 (713)
                      ..|+|.+++.|.                .+.|+|+|++|++|++.+..|.+||||++++++.              +++|
T Consensus         5 ~~G~i~~~l~y~----------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT   68 (142)
T 1rh8_A            5 ITGEIQLQINYD----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEc----------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeec
Confidence            369999999986                4899999999999999999999999999999763              4789


Q ss_pred             EeeeCCCCCeeeeEEEEe-c-----CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC
Q 005132          534 KVIFKTLNPQWHQTLEFP-D-----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  599 (713)
Q Consensus       534 ~v~~~t~nP~wne~~~f~-v-----~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  599 (713)
                      +++++|+||+|||+|.|. +     ....|.|+|||+|.+++|++||++.|+|.++..+....+||+|.+..
T Consensus        69 ~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             cccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            999999999999999997 5     36799999999999999999999999999997777788999998654

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=4.8e-19  Score=163.86  Aligned_cols=113  Identities=25%  Similarity=0.434  Sum_probs=100.3

Q ss_pred             CCceEEEEEEEccCccccccCCC-----------CCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC-CCeEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGT-----------SDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHV  561 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~-----------~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V  561 (713)
                      ..+.|+|+|++|++|++.|..+.           +||||++++++.. .+|+++++|+||+|||+|.|.+. ...|.|+|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~~V   83 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCCCEEEEEE
Confidence            35899999999999998875443           9999999998865 69999999999999999999984 58899999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcCCCCCcEEEEEEEE
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ||+|.+++|++||++.|+|.++..+  .....|++|.  +.|+|+++++|
T Consensus        84 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~i~l~l~~  131 (136)
T 1gmi_A           84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDL  131 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEE
T ss_pred             EeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--CCeEEEEEEEE
Confidence            9999999999999999999999764  3458999997  48999999998

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=2.4e-19  Score=168.54  Aligned_cols=119  Identities=28%  Similarity=0.472  Sum_probs=105.4

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.                .+.|+|+|++|++|++.+..+.+||||++++.     ..+++|+++++|+||
T Consensus        18 ~~G~l~~~l~~~----------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   81 (149)
T 1a25_A           18 RRGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP   81 (149)
T ss_dssp             TTCEEEEEEEES----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred             cceEEEEEEEec----------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCC
Confidence            369999999873                37899999999999999999999999999996     357899999999999


Q ss_pred             eeeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEE
Q 005132          543 QWHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI  603 (713)
Q Consensus       543 ~wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  603 (713)
                      +|||+|.|.+.    ...|.|+|||+|.+++|++||++.|+|.++..+ ....||+|.+...|++
T Consensus        82 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A           82 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             EEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             cCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            99999999985    368999999999999999999999999999766 5889999987555543

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.78  E-value=9.5e-19  Score=161.99  Aligned_cols=114  Identities=32%  Similarity=0.460  Sum_probs=101.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||++++.+     .+++|+++++|+||+
T Consensus         2 ~G~l~~sl~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~   67 (138)
T 3n5a_A            2 RGELLLSLCYN--------------PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI   67 (138)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCE
T ss_pred             CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCc
Confidence            59999999998              67899999999999999999999999999999964     478999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++            .++.+..+|++|.
T Consensus        68 wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~  137 (138)
T 3n5a_A           68 FNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK  137 (138)
T ss_dssp             EEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecC
Confidence            9999999984     257999999999999999999999999864            2556778888875

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.78  E-value=1.9e-18  Score=164.23  Aligned_cols=118  Identities=28%  Similarity=0.476  Sum_probs=104.9

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|+||++.+..|.+||||++++.+     .+++|+++++|+||
T Consensus        10 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   75 (159)
T 1tjx_A           10 KLGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP   75 (159)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSC
T ss_pred             cCCeEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCC
Confidence            469999999998              67899999999999999999999999999999953     47899999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcCCCC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQGVR  599 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~~~~  599 (713)
                      +|||+|.|.+.     ...|.|+|||+|.+++|++||++.|++..+            .++.+..+||+|.+..
T Consensus        76 ~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A           76 YYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             EEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             cccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            99999999984     467999999999999999999999999853            3556788999998643

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=8e-19  Score=164.57  Aligned_cols=117  Identities=24%  Similarity=0.275  Sum_probs=104.4

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccc-cc------CCCCCcEEEEEECC---eEEEEEeee
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAA-DL------RGTSDPYVKVQYGD---LKKRTKVIF  537 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~-d~------~g~~DPyv~v~~~~---~~~kT~v~~  537 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++. +.      .+.+||||++++.+   .+++|++++
T Consensus        11 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~   76 (147)
T 2enp_A           11 QLGMLHFSTQYD--------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR   76 (147)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCC
T ss_pred             cceEEEEEEEEc--------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeeccc
Confidence            469999999998              7789999999999999984 43      35899999999963   578999999


Q ss_pred             CCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          538 KTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       538 ~t~nP~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      +|+||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++........|++|.+.
T Consensus        77 ~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             SCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             CCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999985     368999999999999999999999999999877777899999854

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.78  E-value=2.9e-18  Score=164.29  Aligned_cols=116  Identities=24%  Similarity=0.409  Sum_probs=103.3

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++.+     .+++|+++++|+||
T Consensus        22 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP   87 (166)
T 2cm5_A           22 ERGKILVSLMYS--------------TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP   87 (166)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSC
T ss_pred             ccceEEEEEEEE--------------CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCC
Confidence            469999999998              67899999999999999999999999999999975     58899999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcCC
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQG  597 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~~  597 (713)
                      +|||+|.|.+.     ...|.|+|||+|.+++|++||++.|+|..+            .++....+|+.|.+
T Consensus        88 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A           88 EFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             EEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             cccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            99999999984     468999999999999999999999999874            24556677777764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=2.3e-18  Score=159.65  Aligned_cols=117  Identities=24%  Similarity=0.272  Sum_probs=103.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccC-CCCCcEEEEEECC---eEEEEEeeeCCCCCe
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~  543 (713)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+.. +.+||||++++.+   .+++|+++++|+||+
T Consensus         7 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~   72 (138)
T 1ugk_A            7 GLGTLFFSLEYN--------------FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA   72 (138)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE
T ss_pred             ccEEEEEEEEEE--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCc
Confidence            369999999998              6679999999999999999985 8999999999963   689999999999999


Q ss_pred             eeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCC-ceeeEEEcCCC
Q 005132          544 WHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQGV  598 (713)
Q Consensus       544 wne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~  598 (713)
                      |||+|.|. +.     ...|.|+|||+|.+++|++||++.++|.++..+. ....|++|...
T Consensus        73 wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             EeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            99999995 53     3689999999999999999999999999997654 44677999754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.77  E-value=1.4e-18  Score=167.31  Aligned_cols=117  Identities=27%  Similarity=0.426  Sum_probs=103.2

Q ss_pred             ecccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCcccccc-CCCCCcEEEEEECC-----eEEEEEeeeCC
Q 005132          466 KVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKT  539 (713)
Q Consensus       466 ~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t  539 (713)
                      ....|+|.+++.|.                .+.|.|+|++|++|++.|. .|.+||||++++.+     .+++|+++++|
T Consensus        15 ~~~~G~l~~~l~y~----------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t   78 (171)
T 2q3x_A           15 TPAMGDIQIGMEDK----------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT   78 (171)
T ss_dssp             --CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             CCCccEEEEEEEEC----------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC
Confidence            34469999999984                4899999999999999985 79999999999964     37899999999


Q ss_pred             CCCeeeeEEEEecC--CCeEEEEEE-ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          540 LNPQWHQTLEFPDD--GSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       540 ~nP~wne~~~f~v~--~~~l~i~V~-D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      +||+|||+|.|.+.  ...|.|+|| |+|.+++|++||++.++|.++..+....+||+|.+.
T Consensus        79 ~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           79 LDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             SSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            99999999999984  578999999 999999999999999999999888889999999854

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=1.6e-18  Score=159.38  Aligned_cols=115  Identities=19%  Similarity=0.298  Sum_probs=99.8

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECC--eEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--  569 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~--  569 (713)
                      ....|+|+|++|++|++.|..|.+||||++++++  .+++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++  
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQ   82 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCCEEEEEEEGGGTTSST
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCEEEEEEEECCCCCCCC
Confidence            4578999999999999999999999999999975  7899999999999999999999983 5569999999999876  


Q ss_pred             -CCeeEEEEEEceec-CCCCceeeEEEcCCC-------CCcEEEEEEEE
Q 005132          570 -SSSIGDCVVEYQRL-PPNQMADKWIPLQGV-------RKGEIHVLITR  609 (713)
Q Consensus       570 -d~~iG~~~i~L~~l-~~~~~~~~w~~L~~~-------~~G~i~~~l~~  609 (713)
                       |++||++.+++..+ .......+|++|...       ..|+|++++++
T Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence             89999999999888 333344689999643       36999999876

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.76  E-value=5.7e-18  Score=159.87  Aligned_cols=115  Identities=29%  Similarity=0.332  Sum_probs=94.2

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC--Ce---EEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--DL---KKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~~---~~kT~v~~~t~nP  542 (713)
                      ..|+|.+++.|.              +..+.|.|+|++|++|++.+..|.+||||++++.  +.   +++|+++++|+||
T Consensus        15 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   80 (153)
T 1w15_A           15 GRGELLVSLCYQ--------------STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA   80 (153)
T ss_dssp             -CCEEEEEEEEE--------------TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSE
T ss_pred             cccEEEEEEEEc--------------CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCC
Confidence            469999999998              6779999999999999999989999999999993  33   6799999999999


Q ss_pred             eeeeEEEEecCC-----CeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132          543 QWHQTLEFPDDG-----SPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  596 (713)
Q Consensus       543 ~wne~~~f~v~~-----~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~  596 (713)
                      +|||+|.|.+..     ..|.|+|||+|.+++|++||++.+++...            .++.+..+|++|.
T Consensus        81 ~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~  151 (153)
T 1w15_A           81 VFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC  151 (153)
T ss_dssp             EEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             eecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeeccccc
Confidence            999999999842     57999999999999999999999999872            1345566777765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.75  E-value=6.3e-18  Score=159.26  Aligned_cols=112  Identities=21%  Similarity=0.337  Sum_probs=99.1

Q ss_pred             ccEEEEEEEEeEcCCCCCC----------CCCCCcEEEEEECCeE-EeccCC-CCCCCccceEEEEEEeCCCceEEEEEE
Q 005132          365 GRKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY  432 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~----------~g~~dpyv~v~l~~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~  432 (713)
                      .|.|.|+|++|++|+++|.          .|.+||||+++++++. ++|+++ +|.||.|||+|+|.+.. ...|.|+||
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~  106 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVF  106 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEE
Confidence            4799999999999998772          3679999999998764 799999 99999999999999764 568999999


Q ss_pred             EecCC-CCceeEEEEEeccccccC----CeeeeeeeceecccceEEEEEEEE
Q 005132          433 NEEIF-GDENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       433 d~~~~-~d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      |++.+ +|++||.+.|+++++..+    ...+.|++|+.  .|+|+++++|.
T Consensus       107 D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          107 HETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             ECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             ECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99988 799999999999999865    56889999985  79999999874

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=7e-18  Score=153.65  Aligned_cols=114  Identities=24%  Similarity=0.355  Sum_probs=101.9

Q ss_pred             cEEEEEEEEeEcCCCC---CCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPK---DKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~---~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~  437 (713)
                      |.|.|+|++|++|+..   +..|.+||||++++++   ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus         3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~   82 (126)
T 1rlw_A            3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence            6899999999999874   5568999999999964   78999999 99999999999999854 478999999999988


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      +|++||.+.+++.++..+.....|++|.+.+.|.|+++++..
T Consensus        83 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~  124 (126)
T 1rlw_A           83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeC
Confidence            899999999999999988888999999987778888887643

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=3.3e-18  Score=164.70  Aligned_cols=117  Identities=18%  Similarity=0.234  Sum_probs=99.8

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~d~  571 (713)
                      ....+.|+|+|++|++|++.+..+.+||||+|++++++++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++|+
T Consensus        32 ~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           32 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCE
T ss_pred             cCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCCCCEEEEEEEECCCCCCCc
Confidence            3567889999999999994444445999999999999999999999999999999999985 678999999999999999


Q ss_pred             eeEEEEEEceecCCC-----CceeeEEEcCCC-----CCcEEEEEEEE
Q 005132          572 SIGDCVVEYQRLPPN-----QMADKWIPLQGV-----RKGEIHVLITR  609 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~-----~~~~~w~~L~~~-----~~G~i~~~l~~  609 (713)
                      +||++.++|.++..+     .....|++|...     ..|+|.++|++
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~  159 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  159 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEee
Confidence            999999999988432     123679999653     36999999998

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=153.08  Aligned_cols=116  Identities=22%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEecCC-C
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF-G  438 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~-~  438 (713)
                      .|.|.|+|++|++|+..+. |.+||||+++++++.++|+++ ++.||+|||+|.|.+..    ....|.|+|||++.. +
T Consensus         6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~   84 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ   84 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence            4699999999999999888 999999999999999999999 99999999999999864    368999999999988 8


Q ss_pred             CceeEEEEEeccccccCCeeeeeee---ceec----ccceEEEEEEEEee
Q 005132          439 DENMGSARVNLEGLVEGSVRDIWVP---LEKV----NTGELRLQIEATRV  481 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~~~~~~w~~---L~~~----~~G~I~l~l~~~~~  481 (713)
                      |++||++.+++.++..+.....|++   |.+.    ..|+|++++.|.+.
T Consensus        85 ~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           85 NKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             CCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             CceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            8999999999999988888888988   6442    35999999999853

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.74  E-value=2.2e-17  Score=152.55  Aligned_cols=119  Identities=24%  Similarity=0.358  Sum_probs=106.4

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC--CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCce
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~--~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~  441 (713)
                      .+.|.|+|++|++|+..+..|.+||||+++++++.++|+++  ++.||.|||+|.|.+......|.|+|||++.+ +|++
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~   88 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDA   88 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCC
T ss_pred             cEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCce
Confidence            47999999999999999988999999999999888999998  69999999999999988788999999999988 7999


Q ss_pred             eEEEEEeccccc-cCCeeeeeeecee--cccceEEEEEEEEeecC
Q 005132          442 MGSARVNLEGLV-EGSVRDIWVPLEK--VNTGELRLQIEATRVDD  483 (713)
Q Consensus       442 lG~~~i~l~~l~-~~~~~~~w~~L~~--~~~G~I~l~l~~~~~~~  483 (713)
                      ||.+.+++.++. .+.....||+|..  ...|+|++++.|.|...
T Consensus        89 lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           89 VGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             EEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence            999999999994 4555778999963  34799999999997654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.74  E-value=5e-17  Score=152.44  Aligned_cols=113  Identities=33%  Similarity=0.580  Sum_probs=102.6

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC------
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------  437 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~------  437 (713)
                      .|.|.|+|++|++|+..+..|.+||||+++++++.++|+++ ++.||.|||+|.|.+..+...|.|+|||++..      
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~   95 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK   95 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHH
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCcccccc
Confidence            47999999999999999999999999999999999999999 99999999999999988888999999999973      


Q ss_pred             ------CCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132          438 ------GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  479 (713)
Q Consensus       438 ------~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~  479 (713)
                            +|++||++.+++.++  ......|++|...     ..|+|++++.|.
T Consensus        96 ~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           96 QRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             TTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  799999999999998  3456799999853     369999999885

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=1.9e-17  Score=152.31  Aligned_cols=113  Identities=24%  Similarity=0.348  Sum_probs=103.0

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l  442 (713)
                      .+.|.|+|++|++|+..+..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.+....|.|+|||++.. +|++|
T Consensus        12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~l   91 (133)
T 2ep6_A           12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFL   91 (133)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEEC
T ss_pred             ceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            36999999999999999989999999999999999999999 99999999999999987788999999999998 79999


Q ss_pred             EEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEEE
Q 005132          443 GSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  479 (713)
Q Consensus       443 G~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~  479 (713)
                      |++.+++.++..+.  ..|++|...     ..|+|+++++|.
T Consensus        92 G~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           92 GKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             CBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEE
Confidence            99999999997654  489999753     469999999886

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.73  E-value=4.1e-17  Score=153.95  Aligned_cols=117  Identities=26%  Similarity=0.338  Sum_probs=96.9

Q ss_pred             CccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC------eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecC
Q 005132          364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI  436 (713)
Q Consensus       364 ~~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~------~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~  436 (713)
                      ..+.|.|+|++|++|+..+..|.+||||+++++.      ..++|+++ ++.||.|||+|.|.+......|.|+|||++.
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~   97 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR   97 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCS
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCC
Confidence            3479999999999999999889999999999952      58999999 9999999999999988778899999999998


Q ss_pred             C-CCceeEEEEEeccccccCCee------eeeeeceec-----ccceEEEEEEEEe
Q 005132          437 F-GDENMGSARVNLEGLVEGSVR------DIWVPLEKV-----NTGELRLQIEATR  480 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~------~~w~~L~~~-----~~G~I~l~l~~~~  480 (713)
                      . +|++||++.+++.++..+...      ..|++|...     ..|+|++++.|.|
T Consensus        98 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           98 LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            8 899999999999999865532      589999753     3699999999974

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.71  E-value=5.8e-17  Score=149.75  Aligned_cols=113  Identities=19%  Similarity=0.409  Sum_probs=98.5

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCC-----------CCcEEEEEECCe-EEeccCC-CCCCCccceEEEEEEeCCCceEEEEE
Q 005132          365 GRKINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKC  431 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~-----------~dpyv~v~l~~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V  431 (713)
                      .|.|.|+|++|++|++.+..+.           +||||++++++. ..+|+++ ++.||.|||+|+|.+... ..|.|+|
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V   83 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence            3699999999999998774433           999999999766 4799999 999999999999998765 8999999


Q ss_pred             EEecCC-CCceeEEEEEeccccccCC--eeeeeeeceecccceEEEEEEEEe
Q 005132          432 YNEEIF-GDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGELRLQIEATR  480 (713)
Q Consensus       432 ~d~~~~-~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~I~l~l~~~~  480 (713)
                      ||++.. +|++||.+.+++.++..+.  ..+.|++|+.  .|+|+++++|..
T Consensus        84 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~  133 (136)
T 1gmi_A           84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             EeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEe
Confidence            999987 7999999999999998653  4588999985  799999999974

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.69  E-value=1.6e-16  Score=153.59  Aligned_cols=117  Identities=26%  Similarity=0.361  Sum_probs=96.8

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC------eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF  437 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~------~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~  437 (713)
                      .|.|.|+|++|++|+..+..|.+||||++++++      ..++|+++ ++.||.|||+|.|.+......|.|+|||++.+
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~   86 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL   86 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC--
T ss_pred             cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCC
Confidence            379999999999999999899999999999954      67999999 99999999999999887778999999999988


Q ss_pred             -CCceeEEEEEeccccccCCee-e-----eeeeceec-----ccceEEEEEEEEee
Q 005132          438 -GDENMGSARVNLEGLVEGSVR-D-----IWVPLEKV-----NTGELRLQIEATRV  481 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~-----~~G~I~l~l~~~~~  481 (713)
                       +|++||.+.++|.++...... .     .||+|...     ..|+|++++.|.|.
T Consensus        87 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           87 TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             --CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence             899999999999999876543 2     79999853     36999999999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=141.76  Aligned_cols=103  Identities=21%  Similarity=0.419  Sum_probs=92.6

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+..|.+||||++++   +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||++.+
T Consensus        26 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~  105 (141)
T 2d8k_A           26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF  105 (141)
T ss_dssp             CCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSS
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCC
Confidence            489999999999999998999999999999   3468999999 99999999999998533    257899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                       ++++||++.+++.++..+.....|++|....
T Consensus       106 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          106 SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence             8999999999999998888888999998754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.67  E-value=5e-16  Score=143.05  Aligned_cols=104  Identities=16%  Similarity=0.213  Sum_probs=90.6

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEE-EeC---CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+. +..|.+||||++++     +...++|+++ ++.||+|||+|.|. +..   ....|.|+|||++
T Consensus        20 ~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d   98 (134)
T 2b3r_A           20 GTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE   98 (134)
T ss_dssp             TEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred             CEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence            589999999999997 77889999999999     3568999999 99999999999999 654   3579999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeeceecccc
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTG  470 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  470 (713)
                      .. ++++||++.+++.++..+.....||+|.+.+.|
T Consensus        99 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           99 SLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             CCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            88 789999999999999888888899999876543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.66  E-value=7e-16  Score=141.65  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=96.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--CeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-C---
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G---  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~---  438 (713)
                      ..|.|+|++|++|+..+..|.+||||+++++  .+.++|+++ ++.||.|||+|.|.+.... .|.|+|||++.. +   
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~   83 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQG   83 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCC
Confidence            4799999999999999999999999999996  478999999 9999999999999987654 499999999987 3   


Q ss_pred             CceeEEEEEeccccc-cCCeeeeeeeceec-------ccceEEEEEEE
Q 005132          439 DENMGSARVNLEGLV-EGSVRDIWVPLEKV-------NTGELRLQIEA  478 (713)
Q Consensus       439 d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~-------~~G~I~l~l~~  478 (713)
                      |++||.+.+++.++. .......|++|...       ..|+|++++.+
T Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           84 AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            899999999999984 33344578888754       26899998865

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.66  E-value=4.5e-16  Score=149.70  Aligned_cols=118  Identities=14%  Similarity=0.244  Sum_probs=99.9

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCcee
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  442 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~l  442 (713)
                      .+.|.|+|++|++|+..+..+.+||||+|+++++.++|+++ ++.||+|||+|.|.+. +...|.|+|||++.+ +|++|
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~l  113 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLL  113 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceE
Confidence            36899999999999844444559999999999899999999 9999999999999874 588999999999988 89999


Q ss_pred             EEEEEeccccccCC-----eeeeeeeceec-----ccceEEEEEEEEeecC
Q 005132          443 GSARVNLEGLVEGS-----VRDIWVPLEKV-----NTGELRLQIEATRVDD  483 (713)
Q Consensus       443 G~~~i~l~~l~~~~-----~~~~w~~L~~~-----~~G~I~l~l~~~~~~~  483 (713)
                      |.+.+++.++..+.     ....|++|...     ..|+|.+++.|.+++.
T Consensus       114 G~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~  164 (173)
T 2nq3_A          114 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLES  164 (173)
T ss_dssp             EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC-
T ss_pred             EEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecch
Confidence            99999999987532     13679999874     3699999999987743

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.65  E-value=1.2e-15  Score=143.78  Aligned_cols=102  Identities=25%  Similarity=0.434  Sum_probs=92.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|++|+..+..+.+||||++++   ++..++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        42 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~  121 (152)
T 1rsy_A           42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  121 (152)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC
Confidence            589999999999999998999999999999   4568999999 999999999999987642   67999999999988 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      ++++||++.+++.++..+.....|++|...
T Consensus       122 ~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          122 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            899999999999999888888999999763

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=7.9e-16  Score=142.84  Aligned_cols=105  Identities=24%  Similarity=0.443  Sum_probs=91.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+..+.+||||++++     +...++|+++ ++.||+|||+|.|.+..    ....|.|+|||++
T Consensus        21 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  100 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA  100 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBC
T ss_pred             CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECC
Confidence            589999999999999999999999999999     3568999999 99999999999999432    2579999999999


Q ss_pred             CC-C--CceeEEEEEeccccccCCeeeeeeeceecccce
Q 005132          436 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  471 (713)
Q Consensus       436 ~~-~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  471 (713)
                      .. +  +++||.+.+++.++.... ...||+|.....|.
T Consensus       101 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g~  138 (141)
T 1v27_A          101 RVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGP  138 (141)
T ss_dssp             SSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSCC
T ss_pred             CCcCCCCceEEEEEEEccccCCCC-CCceEECcccccCC
Confidence            88 4  899999999999987654 78999998765543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.65  E-value=1e-15  Score=144.29  Aligned_cols=104  Identities=24%  Similarity=0.411  Sum_probs=90.3

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeC--CCceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+ .|.+||||++++     ....++|+++ ++.||.|||+|.|.+..  ....|.|+|||++..
T Consensus        27 ~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  105 (153)
T 3fbk_A           27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ  105 (153)
T ss_dssp             SEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCC
Confidence            58999999999999988 699999999999     3458999999 99999999999999843  345699999999987


Q ss_pred             -C-CceeEEEEEecccccc-CCeeeeeeeceecccc
Q 005132          438 -G-DENMGSARVNLEGLVE-GSVRDIWVPLEKVNTG  470 (713)
Q Consensus       438 -~-d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~G  470 (713)
                       + |++||++.+++.++.. +.....|++|.....|
T Consensus       106 ~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          106 SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence             5 8999999999999984 6677899999876544

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.65  E-value=4.2e-16  Score=176.26  Aligned_cols=118  Identities=25%  Similarity=0.419  Sum_probs=106.4

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA  569 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~~~~  569 (713)
                      ....+.|+|+|++|++|++.|..|.+||||++++++.+++|+++++|+||+|||+|.|.+.   ...|.|+|||+|.+++
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999984   4679999999999999


Q ss_pred             CCeeEEEEEEceecCCCC----ceeeEEEcCCCCCcEEEEEEEEE
Q 005132          570 SSSIGDCVVEYQRLPPNQ----MADKWIPLQGVRKGEIHVLITRK  610 (713)
Q Consensus       570 d~~iG~~~i~L~~l~~~~----~~~~w~~L~~~~~G~i~~~l~~~  610 (713)
                      |++||++.++|.++..+.    +...|++|.+...|+|.++++++
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            999999999999886543    37899999999999999999884

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.64  E-value=1.1e-15  Score=142.24  Aligned_cols=101  Identities=25%  Similarity=0.438  Sum_probs=92.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|++|+..+..+.+||||++++   +...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        34 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~  113 (143)
T 3f04_A           34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC
Confidence            589999999999999888899999999999   5568999999 999999999999997643   47999999999998 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      +|++||++.++|.++..+.....|++|+.
T Consensus       114 ~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            89999999999999988888899999974

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.64  E-value=1.5e-15  Score=138.66  Aligned_cols=99  Identities=24%  Similarity=0.443  Sum_probs=85.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeC----CCceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+..|.+||||++++     +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        18 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d   97 (129)
T 2bwq_A           18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   97 (129)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECC
Confidence            589999999999999998999999999999     3568999999 99999999999999532    2579999999999


Q ss_pred             CC-C--CceeEEEEEeccccccCCeeeeeeece
Q 005132          436 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~--d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      .. +  +++||.+.+++.++.... ...||+|+
T Consensus        98 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           98 RVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             ------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            88 4  999999999999987654 77899985

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.63  E-value=6.1e-16  Score=145.23  Aligned_cols=106  Identities=30%  Similarity=0.454  Sum_probs=94.6

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+..+..+.+||||+++++     ...++|+++ ++.||.|||+|.|.+...  ...|.|+|||++..
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            4899999999999999989999999999995     468999999 999999999999998763  46899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecccceE
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  472 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I  472 (713)
                       +|++||++.+++.++..+ ..+.||+|.....|++
T Consensus       111 ~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence             899999999999999876 4678999998766764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.63  E-value=7.5e-16  Score=143.27  Aligned_cols=103  Identities=22%  Similarity=0.411  Sum_probs=91.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC--------------eEEeccCC-CCCCCccceEEEEE-EeC---CCce
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--------------IVQRTRTA-HSPNHVWNQKFELD-EIG---GGEC  426 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~--------------~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~  426 (713)
                      +.|.|+|++|++|+.++..|.+||||+++++.              ..++|+++ ++.||.|||+|.|. +..   ....
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~   97 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCE
Confidence            48999999999999999999999999999954              25899999 99999999999997 433   3679


Q ss_pred             EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                      |.|+|||++.. ++++||.+.+++.++........||+|....
T Consensus        98 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            99999999998 7999999999999998777778999998753

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.62  E-value=1.6e-15  Score=137.25  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=98.4

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeee-CCCCCeeeeEEEEec-----CCCeEEEEEEECCCCC
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALL  568 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v-----~~~~l~i~V~D~d~~~  568 (713)
                      ..-.|+|.|.+|++|+     |.+|||+++.+.+.+++|++++ ++.||+|||.|.|++     .+..|.+.|+|+++++
T Consensus        19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           19 SHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             CcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            3467999999999998     5899999999999999999998 699999999999997     3789999999999999


Q ss_pred             CCCeeEEEEEEceecCCCCceeeEEEcCCCC----CcEEEEEEEEEe
Q 005132          569 ASSSIGDCVVEYQRLPPNQMADKWIPLQGVR----KGEIHVLITRKV  611 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~~~l~~~~  611 (713)
                      ++++||++.++|.++........+-+|.+..    .++|.++++|+-
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999997766666777775432    399999999943

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=142.48  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=91.0

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+ ..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        23 ~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d  102 (148)
T 3fdw_A           23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHG  102 (148)
T ss_dssp             TEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECC
Confidence            58999999999999887 57899999999994     348999999 999999999999997664   457999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      .. ++++||.+.++|.++..+.....|++|.+.
T Consensus       103 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A          103 RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             GGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             CCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            88 799999999999999877777899999874

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.62  E-value=2.2e-15  Score=144.91  Aligned_cols=103  Identities=25%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             cEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEE-EecCC
Q 005132          366 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~-~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~  437 (713)
                      +.|.|+|++|++|+.++. .|.+||||++++.  +   ..++|+++ ++.||+|||+|.|.+......|.|+|| |++.+
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~  109 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRM  109 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTT
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCC
Confidence            589999999999999885 6999999999984  2   38899999 999999999999998767889999999 99888


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                       +|++||.+.++|.++..+.....||+|....
T Consensus       110 ~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          110 DHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             CSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence             7899999999999998777888999998753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=143.01  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC------eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~------~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+.++..|.+||||++++..      .++||+++ +|.||+|||+|.|.+...   ...|.|+|||++
T Consensus        43 ~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d  122 (155)
T 2z0u_A           43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD  122 (155)
T ss_dssp             TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECC
Confidence            58999999999999999999999999999943      27999999 999999999999997653   568999999999


Q ss_pred             CC-CCceeEEEEEecccccc-CCeeeeeeece
Q 005132          436 IF-GDENMGSARVNLEGLVE-GSVRDIWVPLE  465 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~-~~~~~~w~~L~  465 (713)
                      .+ ++++||++.++|.++.. +.....||+|.
T Consensus       123 ~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          123 RSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             TTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            88 89999999999999963 56678999985

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.62  E-value=2.2e-15  Score=138.02  Aligned_cols=95  Identities=17%  Similarity=0.296  Sum_probs=76.4

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~  571 (713)
                      ..+.|.|+|++|++++.   .|.+||||+++  .+..+|++++ +|+||+|||+|.|.+.  ...|.|+|||+| +++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            45899999999998853   57899999999  3344565554 7999999999999984  567999999999 89999


Q ss_pred             eeEEEEEEceecCCCC--ceeeEEEc
Q 005132          572 SIGDCVVEYQRLPPNQ--MADKWIPL  595 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~~--~~~~w~~L  595 (713)
                      +||++.|+|.++....  ....|.++
T Consensus        77 ~iG~~~i~l~~l~~~~~~~~~~~~~~  102 (131)
T 2cjt_A           77 MVGTVWIPLRTIRQSNEEGPGEWLTL  102 (131)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEEC
T ss_pred             eEEEEEEEHHHhhhcCCCCccccEEc
Confidence            9999999999985432  22356555

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.61  E-value=4.3e-15  Score=138.13  Aligned_cols=101  Identities=29%  Similarity=0.489  Sum_probs=90.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEE-EeCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELD-EIGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~-v~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|++|+..+..|.+||||+++++.     ..++|+++ ++.||.|||+|.|. +...   ...|.|+|||++
T Consensus        29 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  108 (142)
T 2chd_A           29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED  108 (142)
T ss_dssp             TEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECC
Confidence            58999999999999999899999999999953     68999999 99999999999998 4432   368999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      .. +|++||++.+++.++..+.....|++|+.
T Consensus       109 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          109 KFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             TTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            88 78999999999999998888888998875

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=1.1e-14  Score=134.85  Aligned_cols=100  Identities=19%  Similarity=0.275  Sum_probs=87.3

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---C-eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K-IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~---~-~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++   ++..|.+||||++++.   + ..++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.+
T Consensus        26 ~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~  102 (138)
T 1wfm_A           26 AELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence            589999999994   5778999999999992   2 36899999 999999999999997653   56899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecc
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  468 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  468 (713)
                       +|++||.+.++|.++..+.....|++|....
T Consensus       103 ~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence             8999999999999997666778999998743

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=1.7e-14  Score=133.34  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=88.6

Q ss_pred             cEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEE-EeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~-g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~-v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+.. +.+||||++++.   ...++|+++ ++.||+|||+|.|. +...   ...|.|+|||++.
T Consensus        22 ~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~  101 (138)
T 1ugk_A           22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC
Confidence            5899999999999999885 899999999994   479999999 99999999999996 5442   4699999999998


Q ss_pred             C-CCceeEEEEEeccccccCCe-eeeeeeceec
Q 005132          437 F-GDENMGSARVNLEGLVEGSV-RDIWVPLEKV  467 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~  467 (713)
                      + +|++||++.++|.++..+.. ...|++|...
T Consensus       102 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A          102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            8 88999999999999987654 4567888764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=7.9e-15  Score=136.34  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=88.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..| +||||++++.     ...++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.
T Consensus        24 ~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            58999999999999999888 9999999992     268999999 999999999999997542   4599999999997


Q ss_pred             C-C--CceeEEEEEeccccccCCeeeeeeeceec
Q 005132          437 F-G--DENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       437 ~-~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      + .  +++||.+.+++.++..+.....|++|...
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             ccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            6 3  47999999999999877777899999874

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=6.1e-15  Score=138.00  Aligned_cols=102  Identities=20%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             cEEEEEEEEeEcCCCC-CC------CCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEE
Q 005132          366 RKINVTVVEGKDLMPK-DK------SGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKC  431 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~-~~------~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V  431 (713)
                      +.|.|+|++|++|+.. +.      .+.+||||++++.   ...++|+++ ++.||+|||+|.|.+...   ...|.|+|
T Consensus        26 ~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V  105 (147)
T 2enp_A           26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTV  105 (147)
T ss_dssp             TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEE
T ss_pred             CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEE
Confidence            5899999999999874 33      3589999999994   468999999 999999999999997652   46899999


Q ss_pred             EEecCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          432 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       432 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      ||++.+ ++++||.+.++|.++........|++|...
T Consensus       106 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          106 VDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             ECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            999988 789999999999999877767789999864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.58  E-value=1.9e-14  Score=132.89  Aligned_cols=88  Identities=19%  Similarity=0.347  Sum_probs=79.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCCC---ceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGGG---ECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~~---~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||+++++.     ..++|+++ ++.||.|||+|.|.+....   ..|.|+|||++.
T Consensus        16 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~   95 (138)
T 3n5a_A           16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK   95 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS
T ss_pred             CeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC
Confidence            58999999999999999899999999999942     48899999 9999999999999976643   689999999998


Q ss_pred             C-CCceeEEEEEeccccc
Q 005132          437 F-GDENMGSARVNLEGLV  453 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~  453 (713)
                      . +|++||.+.+++.++.
T Consensus        96 ~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           96 LSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             SSCCEEEEEEEESSSSCH
T ss_pred             CCCCcEEEEEEEccccCC
Confidence            8 8999999999999753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.58  E-value=1.9e-14  Score=136.53  Aligned_cols=105  Identities=20%  Similarity=0.301  Sum_probs=89.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||+++++  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        25 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~  104 (159)
T 1tjx_A           25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (159)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC
Confidence            5899999999999999989999999999994  2   47899999 999999999999997654   4689999999998


Q ss_pred             C-CCceeEEEEEecccc----------c--cCCeeeeeeeceecccc
Q 005132          437 F-GDENMGSARVNLEGL----------V--EGSVRDIWVPLEKVNTG  470 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l----------~--~~~~~~~w~~L~~~~~G  470 (713)
                      + +|++||.+.+++..+          .  .+.....|++|.....|
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~~~  151 (159)
T 1tjx_A          105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEV  151 (159)
T ss_dssp             SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHHH
T ss_pred             CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcccc
Confidence            8 799999999999853          2  23456789999875433

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.56  E-value=1.3e-14  Score=162.66  Aligned_cols=110  Identities=24%  Similarity=0.437  Sum_probs=98.1

Q ss_pred             CCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCCC
Q 005132          493 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNALL  568 (713)
Q Consensus       493 ~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~D~d~~~  568 (713)
                      ....+.|+|+|++|++|++ |..|.+||||+|++++++++|+++++|+||+|||+|.|.+    ....|.|+|||+|.++
T Consensus       390 ~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          390 QRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW  468 (540)
T ss_dssp             STTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSS
T ss_pred             cCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            3456899999999999998 9999999999999999999999999999999999999984    4678999999999999


Q ss_pred             CCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEEE
Q 005132          569 ASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRK  610 (713)
Q Consensus       569 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~~  610 (713)
                      +|++||++.++|.   .+ ....|++|.   .|+|+++++..
T Consensus       469 ~dD~LG~~~~~L~---~g-~~~~~~~l~---~G~l~~~~~~~  503 (540)
T 3nsj_A          469 DDDLLGSCDRSPH---SG-FHEVTCELN---HGRVKFSYHAK  503 (540)
T ss_dssp             CCEEEEEEEECCC---SE-EEEEEEECS---SSEEEEEEEEE
T ss_pred             CCCEEEEEEEEee---CC-cEEEEEEcC---CeEEEEEEEEE
Confidence            9999999999987   23 467899875   59999998874

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.55  E-value=1.8e-14  Score=137.49  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~  571 (713)
                      ..+.|+|+|++|++++   ..|.+||||+++  .+..+|++++ +|+||+|||+|.|.+.  ...|.|+|||+| +++|+
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            3679999999999884   367899999999  3445676665 6999999999999985  568999999999 89999


Q ss_pred             eeEEEEEEceecCC
Q 005132          572 SIGDCVVEYQRLPP  585 (713)
Q Consensus       572 ~iG~~~i~L~~l~~  585 (713)
                      +||++.|+|.++..
T Consensus        86 ~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEEEGGGSCB
T ss_pred             eEEEEEEEHHHhcc
Confidence            99999999999854

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.55  E-value=7.2e-14  Score=133.51  Aligned_cols=105  Identities=19%  Similarity=0.295  Sum_probs=87.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||+++++.     ..++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.
T Consensus        37 ~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  116 (166)
T 2cm5_A           37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI  116 (166)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC
Confidence            58999999999999999899999999999953     68999999 999999999999998653   5699999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeeceecccceE
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  472 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I  472 (713)
                      + ++++||.+.+++.++..  ....|++|.......+
T Consensus       117 ~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~~~  151 (166)
T 2cm5_A          117 GKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKI  151 (166)
T ss_dssp             SSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTCCE
T ss_pred             CCCCcEEEeEEEecccCCc--hhHHHHHHHhCCCCcc
Confidence            8 78999999999998632  3345666655433333

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.53  E-value=3e-14  Score=134.16  Aligned_cols=99  Identities=26%  Similarity=0.371  Sum_probs=79.1

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe---EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI---VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~~---~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|++|+..+..|.+||||++++  ++.   .++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.
T Consensus        30 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~  109 (153)
T 1w15_A           30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER  109 (153)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC
Confidence            589999999999999998899999999999  443   7899999 999999999999997664   3789999999998


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      + ++++||.+.+++.+  .+.....|++|..
T Consensus       110 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A          110 GSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             TSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            8 89999999999988  2333445666654

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=2.4e-14  Score=131.07  Aligned_cols=85  Identities=13%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             cEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcEEEEeecC-CCCCCcccceEEEEEec
Q 005132          173 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDAR-PGSDPRWDSMFNMVLHE  251 (713)
Q Consensus       173 GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~~~tt~i~-~~~nP~WnEtf~~~v~~  251 (713)
                      |.|.|+|++|++|..   .|.                      +||||+|. +...+|++++ ++.||+|||+|.|.+.+
T Consensus         5 ~~L~V~V~~A~~l~~---~g~----------------------~DPYv~v~-~~~~kt~~~~~~t~nP~WnE~f~f~v~~   58 (131)
T 2cjt_A            5 SLLCVGVKKAKFDGA---QEK----------------------FNTYVTLK-VQNVKSTTIAVRGSQPSWEQDFMFEINR   58 (131)
T ss_dssp             EEEEEEEEEEECSSC---GGG----------------------CEEEEEEE-ETTEEEECCCEESSSCEEEEEEEEEECC
T ss_pred             eEEEEEEEEeECCCC---CCC----------------------cCeEEEEE-ecCEEEeEecCCCCCceECCEEEEEEeC
Confidence            899999999998852   333                      29999999 5445666665 79999999999999988


Q ss_pred             CCceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132          252 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  285 (713)
Q Consensus       252 ~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~  285 (713)
                      ....|.|+|||+|  ..+||+||++.|+|.++..
T Consensus        59 ~~~~L~~~V~D~d--~~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           59 LDLGLTVEVWNKG--LIWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             CSSEEEEEEEECC--SSCEEEEEEEEEEGGGSCB
T ss_pred             CCCeEEEEEEECC--CCCCCeEEEEEEEHHHhhh
Confidence            7788999999999  3689999999999999874

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.48  E-value=1.3e-13  Score=155.71  Aligned_cols=115  Identities=21%  Similarity=0.346  Sum_probs=104.7

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC-CCce
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  441 (713)
                      .+.|.|+|++|++|+.++..|.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.+ +|++
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~  465 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDF  465 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCE
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCc
Confidence            46999999999999999999999999999999999999999 999999999999998765 57899999999998 7999


Q ss_pred             eEEEEEeccccccCCe----eeeeeeceecccceEEEEEEEE
Q 005132          442 MGSARVNLEGLVEGSV----RDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       442 lG~~~i~l~~l~~~~~----~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      ||.+.+++.++..+..    ...|++|.+...|+|.+++.+.
T Consensus       466 lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          466 LGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             eEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            9999999999986543    6789999998899999998764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.48  E-value=5e-14  Score=162.53  Aligned_cols=104  Identities=22%  Similarity=0.385  Sum_probs=96.1

Q ss_pred             CCCceEEEEEEEccCccc---cccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEEC
Q 005132          494 SGNGWIELVIVEARDLVA---ADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDH  564 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~---~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~  564 (713)
                      .+.+.|+|+|++|++|++   .|..|.+||||+|++++   .+++|+++++|+||+|||+|.|.+.   ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            567999999999999998   88889999999999984   6889999999999999999999984   47899999999


Q ss_pred             CCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |.++ |++||++.|+|.++..+.....|++|.+.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            9999 99999999999999888888999999854

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.47  E-value=2.2e-13  Score=156.09  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=97.5

Q ss_pred             CCCceEEEEEEEccCcccccc--CCCCCcEEEEEECC-----eEEEEEeeeCC-CCCeeeeEEEEecC---CCeEEEEEE
Q 005132          494 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKT-LNPQWHQTLEFPDD---GSPLTLHVR  562 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t-~nP~wne~~~f~v~---~~~l~i~V~  562 (713)
                      ...+.|+|+|++|++|+..+.  .+.+||||+|.+.+     .++||++++++ +||+|||+|.|.+.   ...|.|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            366899999999999998874  78999999999944     58899999998 99999999999985   367999999


Q ss_pred             ECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          563 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       563 D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      |+|.+++|++||++.+||..+..+   .+|++|.+..     .|.|++.+++
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  622 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEE
Confidence            999999999999999999999765   3699996432     3777787776

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.46  E-value=1e-13  Score=132.28  Aligned_cols=86  Identities=13%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             ccEEEEEEEeeCCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEeCcEEEEeecC-CCCCCcccceEEEEEe
Q 005132          172 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDAR-PGSDPRWDSMFNMVLH  250 (713)
Q Consensus       172 ~GvL~V~v~~A~~L~~~~~~~~~~~~~~~~~~dp~~~~~~~~k~~dpyv~v~~g~~~~tt~i~-~~~nP~WnEtf~~~v~  250 (713)
                      .|+|+|+|++|+++..   .|+                      +||||+|. +...+|++++ ++.||+|||+|.|.+.
T Consensus        13 ~~~L~V~V~~A~~l~~---~g~----------------------~DPYV~v~-~~~~kt~~~~~~t~nP~WnE~f~f~v~   66 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---QEK----------------------FNTYVTLK-VQNVESTTIAVRGSQPSWEQDFMFEIN   66 (167)
T ss_dssp             CCEEEEEEEEEECSSC---GGG----------------------CEEEEEEE-ETTEEEECCCEESSSCEEEEEEEEECC
T ss_pred             eEEEEEEEEEEECCCC---CCC----------------------CCeEEEEE-ecceEEEEecCCCCCCCCCCEEEEEee
Confidence            3899999999998842   233                      29999999 5445666665 6999999999999998


Q ss_pred             cCCceEEEEEEEeCCCCCccceeEEEEEEcccccC
Q 005132          251 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  285 (713)
Q Consensus       251 ~~~~~L~~~v~d~d~~~~~dd~lG~~~i~l~~l~~  285 (713)
                      +....|.|+|||+|  ..+||+||++.|+|.++..
T Consensus        67 ~~~~~L~~~V~D~d--~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           67 RLDLGLTVEVWNKG--LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CTTSEEEEEEEECC--SSCCEEEEEEEEEGGGSCB
T ss_pred             CCCCEEEEEEEECC--CCCCceEEEEEEEHHHhcc
Confidence            88788999999999  3689999999999999874

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.46  E-value=4.6e-13  Score=121.19  Aligned_cols=113  Identities=17%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-C-CCCCccceEEEEEEeCC---CceEEEEEEEecCC-C
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-G  438 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~-t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~  438 (713)
                      ...|+|.|.+|.+|+     |.+|||+++.+.+.+++|+++ + +.||+|||.|+|.+..+   ++.|.|.|+|++.+ +
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSC
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccC
Confidence            458999999999997     578999999999999999999 4 99999999999997653   78999999999998 9


Q ss_pred             CceeEEEEEeccccccCCeeeeeeeceecc----cceEEEEEEEEeec
Q 005132          439 DENMGSARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATRVD  482 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~I~l~l~~~~~~  482 (713)
                      +.+||++.++|+++........+.+|.+..    .++|.+++.|.|.+
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred             CCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence            999999999999999877666666776532    48999999998643

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.44  E-value=7.6e-13  Score=148.29  Aligned_cols=107  Identities=20%  Similarity=0.349  Sum_probs=94.8

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeC--CCceEEEEEEEecCC-CCc
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF-GDE  440 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~V~d~~~~-~d~  440 (713)
                      .+.|.|+|++|++|+. |..|.+||||+|+++++.+||+++ ++.||+|||+|.|.+..  ....|.|+|||+|.. .|+
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            3699999999999998 889999999999999899999999 99999999999998643  578899999999998 789


Q ss_pred             eeEEEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132          441 NMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       441 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      +||.+.++|..    .....|++|+.   |.|+++++..
T Consensus       472 ~LG~~~~~L~~----g~~~~~~~l~~---G~l~~~~~~~  503 (540)
T 3nsj_A          472 LLGSCDRSPHS----GFHEVTCELNH---GRVKFSYHAK  503 (540)
T ss_dssp             EEEEEEECCCS----EEEEEEEECSS---SEEEEEEEEE
T ss_pred             EEEEEEEEeeC----CcEEEEEEcCC---eEEEEEEEEE
Confidence            99999999882    34678998764   9999988755

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.36  E-value=5.9e-14  Score=156.72  Aligned_cols=96  Identities=22%  Similarity=0.368  Sum_probs=14.4

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECCe-EEEEEeeeCC---CCCeeeeEEEEecC--CCeEEEEEEEC-C---
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKT---LNPQWHQTLEFPDD--GSPLTLHVRDH-N---  565 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t---~nP~wne~~~f~v~--~~~l~i~V~D~-d---  565 (713)
                      .+.|+|+|++|++|+++|     ||||++++++. ..||+++++|   +||+|||+|.|.+.  ...|.++|||+ |   
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            478999999999999886     99999999876 6799999999   99999999999862  57899999994 4   


Q ss_pred             CCCCCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          566 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       566 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      ..++|++||++.|++.++..+.....||+|.
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ----------------------CCEECC---
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            3788999999999999998888899999994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.29  E-value=4.1e-12  Score=148.17  Aligned_cols=112  Identities=28%  Similarity=0.502  Sum_probs=98.5

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~  543 (713)
                      .|+|.+++.+.                .+.|.|.+.+|++|+++|..|.+||||++.+     ...+++|+++++|+||+
T Consensus       160 ~g~i~~~~~~~----------------~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~  223 (674)
T 3pfq_A          160 RGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPE  223 (674)
T ss_dssp             SCEEEEEEEEC----------------SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCE
T ss_pred             cccccccceec----------------cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCC
Confidence            58888877653                4789999999999999999999999999999     34578999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          544 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       544 wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      |||+|.|.+.    ...|.++|||+|.+++|++||++.+++.++.... ...|+.|.+
T Consensus       224 wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls  280 (674)
T 3pfq_A          224 WNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLS  280 (674)
T ss_dssp             EEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred             ccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecc
Confidence            9999999974    4569999999999999999999999999986553 589999864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.26  E-value=3.1e-11  Score=138.19  Aligned_cols=112  Identities=19%  Similarity=0.274  Sum_probs=94.2

Q ss_pred             ccEEEEEEEEeEcCCCCCC--CCCCCcEEEEEE-C----CeEEeccCC-CC-CCCccceEEEEEEeCC-CceEEEEEEEe
Q 005132          365 GRKINVTVVEGKDLMPKDK--SGKCDPYVKLQY-G----KIVQRTRTA-HS-PNHVWNQKFELDEIGG-GECLMVKCYNE  434 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~--~g~~dpyv~v~l-~----~~~~kT~~~-~t-~nP~wne~f~f~v~~~-~~~l~i~V~d~  434 (713)
                      .+.|.|+|++|++|+..+.  .+.+||||+|.+ +    ...+||+++ ++ .||+|||+|+|.+..+ ...|+|+|||+
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~  575 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY  575 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEc
Confidence            4689999999999998773  689999999999 3    268999999 76 9999999999998765 47899999999


Q ss_pred             cCC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEEE
Q 005132          435 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  479 (713)
Q Consensus       435 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~  479 (713)
                      +.+ +|++||++.+++..+..+   .+|++|.+..     .|.|.+.+.+.
T Consensus       576 D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          576 DSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            988 899999999999999764   3689987632     36677777654

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.26  E-value=6.8e-12  Score=144.79  Aligned_cols=103  Identities=24%  Similarity=0.364  Sum_probs=93.5

Q ss_pred             ccEEEEEEEEeEcCCC---CCCCCCCCcEEEEEEC---CeEEeccCC-CCCCCccceEEEEEEeC-CCceEEEEEEEecC
Q 005132          365 GRKINVTVVEGKDLMP---KDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI  436 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~---~~~~g~~dpyv~v~l~---~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~  436 (713)
                      .+.|.|+|++|++|+.   ++..|.+||||+|+++   ..++||+++ ++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~   96 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   96 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCS
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCC
Confidence            4699999999999998   7778899999999996   468999999 99999999999999887 46799999999998


Q ss_pred             CCCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          437 FGDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       437 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      +.|++||++.+++.++..+.....|++|...
T Consensus        97 ~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           97 VMDETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             SSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            7799999999999999888878899999864

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.22  E-value=9.1e-13  Score=147.12  Aligned_cols=97  Identities=20%  Similarity=0.410  Sum_probs=14.2

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-EEeccCC-CC---CCCccceEEEEEEeCCCceEEEEEEEe-cC--
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HS---PNHVWNQKFELDEIGGGECLMVKCYNE-EI--  436 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~-~~kT~~~-~t---~nP~wne~f~f~v~~~~~~l~i~V~d~-~~--  436 (713)
                      .+.|.|+|++|++|++++     ||||++++++. ..||+++ ++   .||.|||+|+|.+......|.|+|||+ +.  
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            468999999999998876     99999999765 6799999 88   999999999998765578999999994 42  


Q ss_pred             -C-CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          437 -F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       437 -~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                       . +|++||.+.|++.++..+...+.||+|.+
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ----------------------CCEECC----
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence             3 89999999999999988777889999953

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.09  E-value=2.9e-10  Score=133.30  Aligned_cols=103  Identities=15%  Similarity=0.258  Sum_probs=85.0

Q ss_pred             CceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEeeeC-CCCCeeee-EEEEe-cC---CCeEEEEEEE
Q 005132          496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFK-TLNPQWHQ-TLEFP-DD---GSPLTLHVRD  563 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~-t~nP~wne-~~~f~-v~---~~~l~i~V~D  563 (713)
                      ...|+|+|++|++|+..    .+||||+|.+.+      .+++|+++++ ++||+||| +|.|. +.   -..|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45799999999999853    689999999964      2579999986 59999999 69998 53   4679999999


Q ss_pred             CCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          564 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       564 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      +|    |++||++.+||..|..+   .++++|.+..     .|.|.+.+++
T Consensus       800 ~d----ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~  843 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEA  843 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEE
Confidence            87    78999999999999876   4677886532     3788888887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.07  E-value=6.5e-10  Score=129.64  Aligned_cols=104  Identities=23%  Similarity=0.328  Sum_probs=85.9

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECC-------eEEEEEeeeC-CCCCeeeeE-EEEe-cC---CCeEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIFK-TLNPQWHQT-LEFP-DD---GSPLTLHV  561 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~~-t~nP~wne~-~~f~-v~---~~~l~i~V  561 (713)
                      ..+.|+|+|++|++|+..    .+||||+|.+.+       .+++|+++++ ++||+|||+ |.|. +.   -..|+|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            347899999999999753    689999999964       5779999886 599999998 9998 63   36799999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      ||++    +++||++.+||+.+..+   .++++|.+..     .+.|.+.+++
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~  769 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVA  769 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EecC----CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEE
Confidence            9985    78999999999999876   4678886533     2777777777

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.99  E-value=8.3e-10  Score=129.45  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=83.5

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEE-eeeC-CCCCeeee-EEEE-ecC---CCeEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTK-VIFK-TLNPQWHQ-TLEF-PDD---GSPLTLHV  561 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~-v~~~-t~nP~wne-~~~f-~v~---~~~l~i~V  561 (713)
                      ..+.|.|.|++|++|+.    +.+||||+|.+.+      .++||+ ++++ ++||+||| +|.| .+.   -..|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46789999999999985    4689999999943      367999 8764 69999999 7999 663   35799999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      ||+|    +++||++.+||+.+..+   .+|++|.+..     .+.|.+.+++
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEE
Confidence            9997    78999999999999765   4678886533     2666666665

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.98  E-value=9.5e-10  Score=128.15  Aligned_cols=105  Identities=30%  Similarity=0.489  Sum_probs=91.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  437 (713)
                      +.|.|++.+|++|..++..|.+||||++++     +..+++|+++ ++.||.|||+|.|.+...  ...|.|+|||++..
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence            589999999999999999999999999999     3468999999 999999999999997653  56799999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecccce
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  471 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  471 (713)
                       +|++||.+.+++.++.... ...|+.|.....|+
T Consensus       252 ~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g~  285 (674)
T 3pfq_A          252 SRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE  285 (674)
T ss_dssp             SCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGGG
T ss_pred             cccccccccccchhhhccCC-cccceeecccccce
Confidence             8999999999999998765 47899987654443

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.91  E-value=1.4e-08  Score=89.11  Aligned_cols=107  Identities=16%  Similarity=0.277  Sum_probs=84.6

Q ss_pred             CceEEEEEEEcc--CccccccCCCCCcEEEEEECCeE----EEE-EeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCC
Q 005132          496 NGWIELVIVEAR--DLVAADLRGTSDPYVKVQYGDLK----KRT-KVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNAL  567 (713)
Q Consensus       496 ~~~L~v~v~~a~--~L~~~d~~g~~DPyv~v~~~~~~----~kT-~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~  567 (713)
                      ...|||.+.++.  .|++  .....||||.|.+....    .+| ...++|.+|+|||+|.-.+. +..|.|.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~--~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQA--EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCC--SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCC--ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCEEEEEEEEcCCC-
Confidence            456777775554  3332  33468999999997643    254 67778999999999999985 8999999996443 


Q ss_pred             CCCCeeEEEEEEceecC-----CCCceeeEEEcCCCCCcEEEEEEEEE
Q 005132          568 LASSSIGDCVVEYQRLP-----PNQMADKWIPLQGVRKGEIHVLITRK  610 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~-----~~~~~~~w~~L~~~~~G~i~~~l~~~  610 (713)
                         +|+..|+|++.+|.     .+...+-|++|+  +.|.|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEe
Confidence               79999999999885     456789999999  689999999983

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.87  E-value=2.5e-08  Score=88.69  Aligned_cols=110  Identities=16%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             CCCceEEEEEEEccCccccc-cCCCCCcEEEEEECCe-E---EEE-EeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCC
Q 005132          494 SGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-K---KRT-KVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNA  566 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~---~kT-~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~  566 (713)
                      .....|||.+.+..--+-.. .....||||.|.+... .   .+| ...++|.+|+|||.|.-.+. +..|.|.|++...
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNV   86 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEEECSSC
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCeEEEEEEEcCCC
Confidence            34567888886665333221 2336899999999764 2   567 66778999999999999985 8999999995433


Q ss_pred             CCCCCeeEEEEEEceecC-----CCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          567 LLASSSIGDCVVEYQRLP-----PNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~-----~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                          +|+..|+|++.+|.     .+...+-|++|+  +.|.|++.++|
T Consensus        87 ----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--P~Gkl~v~i~~  128 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRKNNGKTEIWLELK--PQGRMLMNARY  128 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHHTTTCEEEEEECB--SSCEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEE
Confidence                79999999999986     456789999999  68999999999

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.79  E-value=1.3e-07  Score=82.91  Aligned_cols=108  Identities=10%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeE----Eec-cCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV----QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGD  439 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~----~kT-~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d  439 (713)
                      ..|+|.+.++.--.-.......||||.|.++...    .+| .++ +|..|.||+.|.-.+. ....|.|.|++...   
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---
Confidence            4788888777642222233568999999996432    254 666 9999999999998854 57789999996643   


Q ss_pred             ceeEEEEEecccccc-----CCeeeeeeeceecccceEEEEEEEE
Q 005132          440 ENMGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       440 ~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      ++++.|++++++|..     +...+.|++|+.  .|+|++.++|.
T Consensus        82 ~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence            899999999999983     345688999996  69999999886

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.78  E-value=2.6e-08  Score=116.87  Aligned_cols=104  Identities=22%  Similarity=0.329  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C---C--eEEecc-CC--CCCCCccce-EEEE-EEeCC-CceEEEEEE
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G---K--IVQRTR-TA--HSPNHVWNQ-KFEL-DEIGG-GECLMVKCY  432 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~---~--~~~kT~-~~--~t~nP~wne-~f~f-~v~~~-~~~l~i~V~  432 (713)
                      .+.|.|+|++|++|+.    +.+||||+|.+ |   +  .++||+ ++  ++.||+||| +|.| .+..+ -..|+|+||
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            4689999999999975    46899999999 4   1  368999 77  569999999 7999 77554 458999999


Q ss_pred             EecCCCCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEE
Q 005132          433 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  478 (713)
Q Consensus       433 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~  478 (713)
                      |++   +++||++.+++..+..+   .+|++|.+..     .+.|.+.+.+
T Consensus       753 D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          753 EEG---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEM  797 (799)
T ss_dssp             ETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             EeC---CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEE
Confidence            986   79999999999999764   4678886532     2455555544

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.77  E-value=2.3e-08  Score=117.28  Aligned_cols=105  Identities=24%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC------eEEeccCC-C-CCCCccce-EEEEE-EeCC-CceEEEEEEEe
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-H-SPNHVWNQ-KFELD-EIGG-GECLMVKCYNE  434 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~------~~~kT~~~-~-t~nP~wne-~f~f~-v~~~-~~~l~i~V~d~  434 (713)
                      ..|.|+|++|++|+..    .+||||+|.+.+      .+++|+++ + +.||+||| +|.|. +..+ ...|+|+|||+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            4799999999999753    589999999942      35799999 5 59999999 69998 6544 56899999998


Q ss_pred             cCCCCceeEEEEEeccccccCCeeeeeeeceec-----ccceEEEEEEEEe
Q 005132          435 EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEATR  480 (713)
Q Consensus       435 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~~  480 (713)
                      +   +++||++.+||..|..+.   ++++|.+.     ..|.|.+.+.+..
T Consensus       801 d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          801 G---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             T---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             C---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEEe
Confidence            6   899999999999997653   56777653     2477888887764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.76  E-value=3.6e-08  Score=115.02  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-------eEEeccCC-C-CCCCccceE-EEEE-EeCC-CceEEEEEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-------IVQRTRTA-H-SPNHVWNQK-FELD-EIGG-GECLMVKCYN  433 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-------~~~kT~~~-~-t~nP~wne~-f~f~-v~~~-~~~l~i~V~d  433 (713)
                      +.|.|+|++|++|+..    .+||||+|.+.+       .++||+++ + +.||+|||+ |.|. +..+ -..|+|+|||
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            5899999999999753    589999999942       57899998 4 699999998 9998 6554 5689999999


Q ss_pred             ecCCCCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEEE
Q 005132          434 EEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  479 (713)
Q Consensus       434 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~  479 (713)
                      ++   +++||++.++|..|..+.   ++++|.+..     .+.|.+.+.+.
T Consensus       726 ~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          726 EN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             TT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence            85   789999999999997753   567776632     35666766665

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.65  E-value=1.9e-07  Score=82.97  Aligned_cols=108  Identities=12%  Similarity=0.213  Sum_probs=84.5

Q ss_pred             cEEEEEEEEeEcCCCCC-CCCCCCcEEEEEECCe-E---Eec-cCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCC
Q 005132          366 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-V---QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG  438 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~-~~g~~dpyv~v~l~~~-~---~kT-~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~  438 (713)
                      +.|+|.+.++.--+-.. .....||||.|.++.. .   .+| .++ +|..|.||+.|.-.+. ....|.|.|++..   
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a---   85 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKN---   85 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSS---
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCC---
Confidence            47899988877543222 2346899999999643 2   566 556 8999999999998754 5778999999554   


Q ss_pred             CceeEEEEEecccccc-----CCeeeeeeeceecccceEEEEEEEE
Q 005132          439 DENMGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       439 d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      .++++.++|++++|..     +...+.|++|+.  .|+|++.++|.
T Consensus        86 ~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~  129 (138)
T 2enj_A           86 VDLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF  129 (138)
T ss_dssp             CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred             CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence            3899999999999983     345688999996  69999999996

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=92.43  E-value=0.81  Score=41.81  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             CCCCCCceEEEEEEEccCccccc-cCCCCCcEEEEEE--CC-eEEEEEeeeCCCCCeeeeEEEEecC----------CCe
Q 005132          491 NIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQY--GD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSP  556 (713)
Q Consensus       491 ~~~~~~~~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~--~~-~~~kT~v~~~t~nP~wne~~~f~v~----------~~~  556 (713)
                      ...+..+.+.++|.++.--+..- ..+..+|+.-+.+  -. +.+.|.++. ..+|.+|-+-.|.+.          ...
T Consensus        12 ~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~   90 (156)
T 2yrb_A           12 HLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNT   90 (156)
T ss_dssp             SCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred             hccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence            34577899999999987433321 2345577666665  33 566777766 789999998888873          468


Q ss_pred             EEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEcCC-----CCCcEEEEEEEEEecC
Q 005132          557 LTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG-----VRKGEIHVLITRKVPE  613 (713)
Q Consensus       557 l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~-----~~~G~i~~~l~~~~p~  613 (713)
                      +.+++..... +.-+.||.+.|+|..+... .....-.+|.+     ..-|.|.+.++++.|-
T Consensus        91 l~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi  152 (156)
T 2yrb_A           91 ITLEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVSG  152 (156)
T ss_dssp             EEEEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEECC
T ss_pred             EEEEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEeccc
Confidence            8898877542 3446899999999988533 23444456653     2459999999987764

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=85.27  E-value=8.3  Score=37.22  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             EEEEeecCCCCCCcccceEEEEEecC---CceEEEEEEEeCCCCCcc---ceeEEEEEEccc
Q 005132          227 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMKY  282 (713)
Q Consensus       227 ~~~tt~i~~~~nP~WnEtf~~~v~~~---~~~L~~~v~d~d~~~~~d---d~lG~~~i~l~~  282 (713)
                      .+++.+...+.+|.|+|++-+.+...   ...|.|.+++......+|   ..+|.+.++|-.
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            45667777889999999999988654   569999999876421122   368988888754

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=84.25  E-value=3.1  Score=49.25  Aligned_cols=86  Identities=16%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEE--CCe----EEEEEeeeCCCCCeeeeEEEEec------CCCeEEEEEE
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPD------DGSPLTLHVR  562 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~~~f~v------~~~~l~i~V~  562 (713)
                      -...++|+|..+.++...   ..++-||.+.+  |++    ...|..+.-..+|.|||.+.|++      ....|.|+||
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            346899999999998754   35678888766  543    34555555567899999999986      3788999999


Q ss_pred             ECCCC--C----------CCCeeEEEEEEceec
Q 005132          563 DHNAL--L----------ASSSIGDCVVEYQRL  583 (713)
Q Consensus       563 D~d~~--~----------~d~~iG~~~i~L~~l  583 (713)
                      +...-  +          .+..+|.+.++|-+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECC
Confidence            86431  1          245899999998754

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=84.13  E-value=11  Score=36.37  Aligned_cols=52  Identities=10%  Similarity=0.004  Sum_probs=38.8

Q ss_pred             EEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-----CCceeEEEEEecc
Q 005132          399 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-----GDENMGSARVNLE  450 (713)
Q Consensus       399 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-----~d~~lG~~~i~l~  450 (713)
                      .++|.+. ++.+|.|+|++.+.++..   ...|.|++++....     .+..+|.+-+||-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            6788888 999999999999998774   67999999875432     1235566666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	713
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-20
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-18
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-15
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-17
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-16
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-16
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-15
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-15
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-13
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	7e-15
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	8e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	9e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	5e-14
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	9e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	8e-09
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-08
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-09
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-07
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	0.003

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 364 TGRKINVTVVEGKDLMP---KDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQKF 416
           +  K  V V+    +      D     DPYV+L         +         N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 417 ELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 475
           E          L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 476 IE 477
           +E
Sbjct: 121 LE 122

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 499 IELVIVEARDL---VAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF-- 550
             +V++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 551 -PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
            P+  + L + + D N  +   ++G        +   +  +       V +  + + + 
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.0 bits (194), Expect = 4e-18
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-----RTKVIFKTLNPQWHQTLEF--- 550
           + +V+ +A++LV  D  G SDPYVK++     K     +TK I  +LNP+W++T  F   
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 551 -PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 602
             D    L++ + D +    +  +G        L    + D W  L    +GE
Sbjct: 77  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.5 bits (172), Expect = 3e-15
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 361 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQ 414
                  + V V + K+L+P D +G  DPYVKL+       +  Q+T+T   S N  WN+
Sbjct: 10  AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 69

Query: 415 KFELD--EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 471
            F     E      L V+ ++ ++   ++ MGS    +  L +  V D W  L     GE
Sbjct: 70  TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 356 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH--VWN 413
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 414 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPLEK--VNT 469
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      + K     
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 470 GELRLQIE 477
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.5 bits (177), Expect = 9e-16
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 486 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVI-FKTLNPQW 544
           GS G +    +G +E+V+V A+ L  AD     DPYV++      +++ V       P+W
Sbjct: 1   GSSGSS--GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58

Query: 545 HQTLEF--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQ--GVR 599
           ++T  F   +  + L   + D +      ++G+  +  + +     +      +      
Sbjct: 59  NETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY 118

Query: 600 KGEIHVLIT 608
           KGEI V ++
Sbjct: 119 KGEIWVALS 127

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 3e-16
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 554
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP  D  
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 65

Query: 555 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ-----GVRKGEIHVLIT 608
             L + V D +       +G   +    +   Q       L+        KG I++ + 
Sbjct: 66  DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMD 122

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPN-HVWNQKFELDEIGGGE 425
            + V V++  DL+  D SGK DP+  L+ G    +T T +      WN+ F        +
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 426 CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDI---WVPLEKVNTGELRLQIE 477
            L V  ++E+     + +G   + L  + +G           LE+   G + L+++
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.7 bits (175), Expect = 2e-15
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 463 PLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYV 522
           P E+   G+L+  ++                  N  + + I++A +L A D+ GTSDPYV
Sbjct: 14  PKEEEKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYV 59

Query: 523 KVQ---YGDLKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIG 574
           KV        K  TKV  KTLNP +++   F        G  L + V D +       IG
Sbjct: 60  KVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 119

Query: 575 DCVVEYQRLPPNQMADKWIPLQ 596
           +  V    +    + ++W  LQ
Sbjct: 120 EFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH---SPNHVWNQKFELD 419
            ++ V +++  +L   D  G  DPYVK   L   K    T+      +P       F++ 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 420 EIG-GGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 465
               GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 18/128 (14%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 425
           ++ +TV+  K    K       PYV++      ++T    ++ +  W Q   +  +    
Sbjct: 7   QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI-VTPVS 65

Query: 426 CLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWVPLE-------KVNTGELRL 474
            L  + ++ +    D  +G+A +++   ++     + ++ V L+           G+L +
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125

Query: 475 QIEATRVD 482
            ++  +++
Sbjct: 126 CLDGLQLE 133

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 494 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP-D 552
           +    +++ ++ A+            PYV+V      K+T+    T +P+W Q L     
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 553 DGSPLTLHVRDHNALLASSSIGDCVVEYQRL---PPNQMADKWIPLQ-------GVRKGE 602
             S L   V  H  L +   +G   ++          ++ +  + LQ           G+
Sbjct: 63  PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122

Query: 603 IHVLI 607
           + + +
Sbjct: 123 LSICL 127

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.4 bits (169), Expect = 7e-15
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 370 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMV 429
           V V + K    ++K    + YV L+   +   T         W Q F  +       L V
Sbjct: 6   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTV 62

Query: 430 KCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGS 487
           + +N+ +  D  +G+  + L  +          W+ L+                     +
Sbjct: 63  EVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS----------------QAIMA 106

Query: 488 RGQNIGSGNGWIELVIVEAR 507
             +  G+ +     ++++A 
Sbjct: 107 DSEICGTKDPTFHRILLDAH 126

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 560
           + +A+   A   +   + YV ++  ++K  T  + +   P W Q   F        LT+ 
Sbjct: 8   VKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 63

Query: 561 VRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQ---GVRKGEI 603
           V +    +  + +G   +  + +     +   +W+ L     +   EI
Sbjct: 64  VWNKGL-IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEI 110

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 8e-15
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 499 IELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP-- 551
           + + I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +   
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 552 ----DDGSPLTLHVRDHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 596
                    L + + D   +    S  +G+ ++E +    +     W  LQ
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 9e-14
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 362 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQK 415
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69

Query: 416 FELDEIGGGE----CLMVKCYNEEIFG---DENMGSARVNLEGLVEGSVRDIWVPLE 465
           F    +   E     L +  +++        E +G   + LE  +       W  L+
Sbjct: 70  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 496 NGWIELVIVEARDLVAADL-----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQ 543
           NG +++ I EA  L                    DPY+ +   D +  +T    KT +P 
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA 64

Query: 544 WHQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQGVRK 600
           WH        +G  + L V     +     + +C ++++ L    ++  + WI L+   +
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--E 122

Query: 601 GEIHVLIT 608
           G+++V+I 
Sbjct: 123 GKVYVIID 130

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.5 bits (143), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 367 KINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKI-VQRTRTAH-SPNHVWN 413
            + + + E   L P             ++   DPY+ L      + +T T   + +  W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 414 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGE 471
            +F  D   G +  +   ++  I  D+ + +  +  E L++      + W+ LE    G+
Sbjct: 67  DEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGK 124

Query: 472 LRLQIEAT 479
           + + I+ +
Sbjct: 125 VYVIIDLS 132

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (164), Expect = 5e-14
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 36/148 (24%)

Query: 469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQ--- 525
           TGE++LQI                    G + + I++AR+LV  D  G SDP+VKV    
Sbjct: 6   TGEIQLQINYDL----------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49

Query: 526 -----------YGDLKKRTKVIFKTLNPQWHQTLEFPD------DGSPLTLHVRDHNALL 568
                        + K+RTK + K+LNP+W+QT+ +            L + V D++   
Sbjct: 50  GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109

Query: 569 ASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
           ++  +G+ +++           +W PL+
Sbjct: 110 SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 4e-13
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 350 SQQSLSGSSNF-ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-------------- 394
           +   ++G     I+     + + +++ ++L+P+D +G  DP+VK+               
Sbjct: 1   ASHPITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60

Query: 395 YGKIVQRTRTAH-SPNHVWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVN 448
             +  +RT+    S N  WNQ      I   +     L V  ++ + F  ++ +G   ++
Sbjct: 61  SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120

Query: 449 LEGLVEGSVRDIWVPLEK 466
           L           W PL++
Sbjct: 121 LSSTSHLDNTPRWYPLKE 138

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.2 bits (153), Expect = 9e-13
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 502 VIVEARDL-VAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQWHQTLEFPDDGS 555
           +   + +L         S P+  V+  +       K       T+ P+W  T +      
Sbjct: 7   ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG 66

Query: 556 P-LTLHVRDHNALLAS-SSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 608
             + + +        S  ++G  V+  +    N  A+ W+ LQ   + ++ + + 
Sbjct: 67  RVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQ 119

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 11/118 (9%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSPNHV-WNQKFELD- 419
           +I+    E   L  + +     P+  ++          +         +  W   F+   
Sbjct: 6   RISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 420 EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 477
             G    +++    E+   +  +G + +           + W+ L+     ++ + ++
Sbjct: 64  YEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMCVQ 119

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 22/123 (17%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEF 550
              + +V+++AR L  +D+ G SDPYVKV          KK+T V   T N  +++   F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 551 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWI 593
                  +   +   V D      +  IG  V+                  P +   KW 
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWH 133

Query: 594 PLQ 596
            L 
Sbjct: 134 MLC 136

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA---HSPNHVWNQKFE 417
           T   + V V++ + L   D SG  DPYVK+      K + + +T     +PN V+N+ F 
Sbjct: 13  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 455
            D   E      +     + E    +E +G   +       G
Sbjct: 73  FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 366 RKINVTVVEGKDL--MPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP--NHVWNQKF 416
            ++ V ++ G+ L  + K+K+   DP V ++          ++T    +   N  W+ +F
Sbjct: 4   ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63

Query: 417 ELD-EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRL 474
           E +  +     +     + +    ++ +G + +    L +G      V L   N  +   
Sbjct: 64  EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPS 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 499 IELVIVEARDL--VAADLRGTSDPYVKVQYGDL-----KKRTKVIFKT-LNPQWHQTLEF 550
           + + I+  + L  V  +     DP V V+   +      ++T VI     NP+W    EF
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 551 P---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 607
                D + +   V D+++   +  IG   +        +   + + L   + G+ H   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTI---PWNSLKQGYRHVHLLS-KNGDQHPSA 121

Query: 608 T 608
           T
Sbjct: 122 T 122

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 22/129 (17%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-----KRTKVIFKTLNPQWHQTLEF 550
            G + +VI+EA++L   D+ G SDPYVK+           K+T +   TLNP ++++  F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 551 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWI 593
                      + + V D++ +  + +IG   V Y                P +   +W 
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWH 143

Query: 594 PLQGVRKGE 602
            LQ   + +
Sbjct: 144 TLQVEEEVD 152

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRT---AHSPNHVWNQKFE 417
           T  K+ V ++E K+L   D  G  DPYVK+     GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 418 L---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 455
                E      ++V   + +  G ++ +G   V        
Sbjct: 83  FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 15/124 (12%)

Query: 496 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEF 550
            G + + I+    L A D  G SDP+VK+          K +T++  KTLNP++++   +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 551 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI-- 603
                      L + V D++   ++  IG C +        +    W      +  +I  
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKKIER 131

Query: 604 -HVL 606
            H L
Sbjct: 132 WHQL 135

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTA-HSPNHVWNQKFE 417
               + V ++    L   D +G  DP+VKL        K   +T+    + N  +N++F 
Sbjct: 13  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 466
            D        + L +  ++ +I   ++ +G  ++ +     G     W    K
Sbjct: 73  YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLK 123

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 502 VIVEARDLVAADLRGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFP-----D 552
             +EA      +  G  D YV+       G ++ +T +  + L+  W + L  P      
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 553 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 596
             + LTL +R  +     S  G+  +          A +W  L+
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 348 SGSQQSLSGS-----SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY----GKI 398
           SGS  S + +              ++ VT +E       +  G CD YV+       G +
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSV 59

Query: 399 VQRTRTAHSPNH-VWNQKFELD---EIGGGECLMVKCYNEEIFGDEN-MGSARVNLEGLV 453
             +T       H  W +   L    E      L +     + F   +  G  R+ L+G  
Sbjct: 60  EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119

Query: 454 EGSVRDIWVPLEK 466
                  W  L+ 
Sbjct: 120 VPLGAAQWGELKT 132

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 465 EKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKV 524
           EK + GEL   +                    G + + I++A +L A DL G SDPYVK 
Sbjct: 2   EKADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKA 47

Query: 525 QYGD-----LKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIG 574
                     K++T +   TLNP +++ L F       +   L++ V D++ +  +  IG
Sbjct: 48  SLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 107

Query: 575 DCVVEYQRLPPNQMADKWIPLQGVRKGEI---HVLITRK 610
            C V  +   P+   + W  +    +  +   H L+  K
Sbjct: 108 VCRVGPEAADPHGR-EHWAEMLANPRKPVEHWHQLVEEK 145

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 364 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH------SPNHVWNQKFE 417
           T   + VT+++  +L   D +G  DPYVK       +R +         + N  +N+   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 418 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 464
            D   E      L +   + +  G +E +G  RV  E   +   R+ W  +
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE-AADPHGREHWAEM 127

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 366 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFELD-- 419
            ++ V +++  DL  KD +G  DPYVK   L   K   +T+    + N ++N+ F+    
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 420 -EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV--EGSVRDIWVPLEK 466
                   L    Y+ + F   + +G   ++    +  +   R +W  + +
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 499 IELVIVEARDLVAADLRG-TSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD-- 552
             + I EAR L A D +  TSDPY+K+     KK    T+V+ KTL+P + +T  F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 553 ----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 587
                   L   +   +       IG+ ++    +  ++
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 366 RKINVTVVEGKDLMPKDKSGK-CDPYVKLQY---GKIVQRTRTAHSP-NHVWNQKFELDE 420
           +   V + E + L   D+     DPY+K+      K   +TR      +  +++ F    
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 421 IGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 452
           I   +     L     + + F  D+ +G   + L G+
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 33/127 (25%)

Query: 503 IVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQ-TLEFPDD 553
           ++  + L       +   YV+V+   L        + +      ++NP W +    F   
Sbjct: 7   VISGQFLS----ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62

Query: 554 GSP----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE------- 602
             P    L + V +      +  +G  ++    L         + L              
Sbjct: 63  LMPELASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLCLHS-ESNMPLTMPAL 114

Query: 603 -IHVLIT 608
            I + + 
Sbjct: 115 FIFLEMK 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	713
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.83
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.82
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.81
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.8
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.79
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.79
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.78
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.77
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.77
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.76
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.76
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.76
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.74
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.73
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.73
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.71
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.7
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.7
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.7
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.66
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.66
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.64
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.64
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.64
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.6
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.58
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.58
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.54
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.53
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.51
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.51
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.5
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.42
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.4
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.29
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.13
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.78
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.67

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-21  Score=173.65  Aligned_cols=114  Identities=25%  Similarity=0.466  Sum_probs=103.5

Q ss_pred             CCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 005132          494 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       494 ~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~  571 (713)
                      .+.|.|+|+|++|++|++++..|.+||||++++++++++|+++++|.||.|||+|.|.+.  ...|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            467999999999999999999999999999999999999999999999999999999984  578999999999999999


Q ss_pred             eeEEEEEEceecCCCCceeeEEEcC-----CCCCcEEEEEEEE
Q 005132          572 SIGDCVVEYQRLPPNQMADKWIPLQ-----GVRKGEIHVLITR  609 (713)
Q Consensus       572 ~iG~~~i~L~~l~~~~~~~~w~~L~-----~~~~G~i~~~l~~  609 (713)
                      +||++.|+|+++..+.  .+|+.|.     +..+|+|++++++
T Consensus        83 ~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  123 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL  123 (126)
T ss_dssp             ECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEE
Confidence            9999999999997664  4788775     3456999999998

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.4e-20  Score=170.91  Aligned_cols=117  Identities=32%  Similarity=0.458  Sum_probs=107.2

Q ss_pred             cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE---CCeEEEEEeeeCCCCCe
Q 005132          467 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       467 ~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~v~~~t~nP~  543 (713)
                      ...|+|++++.|.              +..+.|+|+|++|+||++.+..|.+||||++++   +..+++|+++++|.||+
T Consensus        18 ~~~G~l~~sl~y~--------------~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~   83 (143)
T d1rsya_          18 EKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV   83 (143)
T ss_dssp             CCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCE
T ss_pred             hcceEEEEEEEEe--------------CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcc
Confidence            3469999999998              677999999999999999999999999999999   34578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  597 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  597 (713)
                      |||+|.|.+.     ...|.|+|||++.++++++||++.|+|.++..+....+||+|+.
T Consensus        84 wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          84 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            9999999873     57899999999999999999999999999998888999999975

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.4e-20  Score=171.04  Aligned_cols=118  Identities=28%  Similarity=0.491  Sum_probs=103.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE-----CCeEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP  542 (713)
                      .+|+|++++.+.                .+.|.|+|++|+||++++..|.+||||++++     +..+++|+++++|.||
T Consensus         2 ~rG~i~l~~~~~----------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP   65 (132)
T d1a25a_           2 RRGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP   65 (132)
T ss_dssp             TTCEEEEEEEES----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred             cccEEEEEEEec----------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCC
Confidence            369999998764                4789999999999999999999999999999     3457899999999999


Q ss_pred             eeeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcE
Q 005132          543 QWHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE  602 (713)
Q Consensus       543 ~wne~~~f~v~----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  602 (713)
                      +|||+|.|.+.    ...|.|+|||+|.+++|++||++.|+|.++..+ ....||+|.+...|+
T Consensus        66 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~ge  128 (132)
T d1a25a_          66 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE  128 (132)
T ss_dssp             EEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred             ccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCCc
Confidence            99999999974    457999999999999999999999999998755 468999998655443

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=3.2e-20  Score=169.60  Aligned_cols=122  Identities=21%  Similarity=0.365  Sum_probs=106.4

Q ss_pred             CCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCC
Q 005132          491 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL  567 (713)
Q Consensus       491 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~  567 (713)
                      ....+.|.|+|+|++|++|+..+..|.+||||++++++.+++|++++ +++||+|||+|.|.+.  ...|.|+|||+|.+
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            34567799999999999999999999999999999999999999987 5899999999999974  56799999999999


Q ss_pred             CCCCeeEEEEEEceecC-CCCceeeEEEcC--CCCCcEEEEEEEEEecC
Q 005132          568 LASSSIGDCVVEYQRLP-PNQMADKWIPLQ--GVRKGEIHVLITRKVPE  613 (713)
Q Consensus       568 ~~d~~iG~~~i~L~~l~-~~~~~~~w~~L~--~~~~G~i~~~l~~~~p~  613 (713)
                      ++|++||++.|+|.++. .+.....|++|.  +..+|+|+++++| .|.
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~-~p~  131 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSF-KPS  131 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEE-EEC
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEE-EeC
Confidence            99999999999999874 344567899985  3446999999999 554

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.7e-20  Score=165.08  Aligned_cols=115  Identities=20%  Similarity=0.347  Sum_probs=102.7

Q ss_pred             CceEEEEEEEccCcccc---ccCCCCCcEEEEEECC---eEEEEEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 005132          496 NGWIELVIVEARDLVAA---DLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA  566 (713)
Q Consensus       496 ~~~L~v~v~~a~~L~~~---d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~D~d~  566 (713)
                      .+.|+|+|++|+||+..   |..|.+||||++.+++   ++++|+++.++.||.|||+|.|.+.   ...|.|+|||+|.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999999864   4568999999999975   5789999999999999999999974   4679999999987


Q ss_pred             CCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEEEEEEec
Q 005132          567 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVP  612 (713)
Q Consensus       567 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~l~~~~p  612 (713)
                      . +|++||++.++|+++..+.....||+|.+..+|+|++++++ +|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~-~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV-AS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC-CC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEE-Ee
Confidence            5 58899999999999998889999999998888999999987 54

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.9e-20  Score=171.21  Aligned_cols=115  Identities=33%  Similarity=0.544  Sum_probs=102.7

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC--------------eEEEE
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD--------------LKKRT  533 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--------------~~~kT  533 (713)
                      ..|+|++++.|.                .+.|.|.|++|+||++.+..|.+||||++++.+              .+++|
T Consensus         5 ~~G~l~lsl~y~----------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT   68 (142)
T d1rh8a_           5 ITGEIQLQINYD----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEe----------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeec
Confidence            369999999985                378999999999999999999999999999942              23579


Q ss_pred             EeeeCCCCCeeeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          534 KVIFKTLNPQWHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       534 ~v~~~t~nP~wne~~~f~v------~~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      +++++|+||.|||+|.|..      ....|.|+|||+|.+++|++||++.|+|.++..+....+||+|...
T Consensus        69 ~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             cCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            9999999999999999984      3668999999999999999999999999999888888999999864

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2e-19  Score=162.83  Aligned_cols=117  Identities=28%  Similarity=0.361  Sum_probs=100.7

Q ss_pred             cccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC---CeEEEEEeeeCCCCCe
Q 005132          467 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       467 ~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~  543 (713)
                      .+.|+|.++++|.              +..+.|+|.|++|+||++.+..|.+||||++++.   ..+++|+++++|.||+
T Consensus         2 ~p~G~l~~sl~y~--------------~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~   67 (130)
T d1dqva1           2 APCGRISFALRYL--------------YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI   67 (130)
T ss_dssp             CSSCEEEEEEECC--------------SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCE
T ss_pred             CCcEEEEEEEEEE--------------CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCee
Confidence            3569999999987              6789999999999999999999999999999994   3578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec--CCCCceeeEEEcCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL--PPNQMADKWIPLQG  597 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l--~~~~~~~~w~~L~~  597 (713)
                      |||+|.|.+.     ...|.|+|||++.+++|++||++.|++...  ........|++|..
T Consensus        68 wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          68 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             EEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             eeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999973     567999999999999999999999986432  22234567999974

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.6e-19  Score=158.47  Aligned_cols=112  Identities=24%  Similarity=0.366  Sum_probs=101.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      |.|.|+|++|++|+.++..|.+||||+++++++.++|+++ ++.||.|||+|.|.+......|.|+|||++.+ +|++||
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG   85 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLG   85 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECC
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEE
Confidence            7999999999999999999999999999999999999999 99999999999999988788999999999988 789999


Q ss_pred             EEEEeccccccCCeeeeeeecee-----cccceEEEEEEEE
Q 005132          444 SARVNLEGLVEGSVRDIWVPLEK-----VNTGELRLQIEAT  479 (713)
Q Consensus       444 ~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~I~l~l~~~  479 (713)
                      ++.+++.++..+.  ..|+.|..     ..+|+|++++++.
T Consensus        86 ~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          86 KVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             BCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            9999999997654  36777754     3469999999876

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=9.1e-19  Score=159.61  Aligned_cols=113  Identities=25%  Similarity=0.426  Sum_probs=100.0

Q ss_pred             CCceEEEEEEEccCccccc-----------cCCCCCcEEEEEECCeE-EEEEeeeCCCCCeeeeEEEEecC-CCeEEEEE
Q 005132          495 GNGWIELVIVEARDLVAAD-----------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHV  561 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d-----------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V  561 (713)
                      ..|.|+|+|++|++|++.+           ..+.+||||++++++.. .+|+++.++.||.|||+|.|++. ...|.|+|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V   83 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecCCceEEEE
Confidence            3589999999999998754           46788999999999865 58999999999999999999984 67899999


Q ss_pred             EECCCCCCCCeeEEEEEEceecCCC--CceeeEEEcCCCCCcEEEEEEEE
Q 005132          562 RDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       562 ~D~d~~~~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ||++.+++|++||++.|+|+++..+  .....|++|+  +.|+|++.+++
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~  131 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDL  131 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEE
Confidence            9999999999999999999998544  3577999998  57999999998

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=156.06  Aligned_cols=112  Identities=26%  Similarity=0.446  Sum_probs=94.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCee
Q 005132          470 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQW  544 (713)
Q Consensus       470 G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~w  544 (713)
                      |+|++++.|.              +..+.|+|+|++|+||++.+..+.+||||++++.     ..+++|+++++|.||.|
T Consensus         1 G~l~l~l~y~--------------~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~w   66 (125)
T d2bwqa1           1 GQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW   66 (125)
T ss_dssp             CEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEE
T ss_pred             CEEEEEEEEE--------------CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEE
Confidence            8999999998              7779999999999999999999999999999992     24689999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCC--CCCeeEEEEEEceecCCCCceeeEEEcC
Q 005132          545 HQTLEFP-DD-----GSPLTLHVRDHNALL--ASSSIGDCVVEYQRLPPNQMADKWIPLQ  596 (713)
Q Consensus       545 ne~~~f~-v~-----~~~l~i~V~D~d~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~  596 (713)
                      ||+|.|. +.     ...|.|+|||++.++  ++++||++.|+|+++..+. ..+||+|+
T Consensus        67 ne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            9999996 42     467999999999864  4569999999999987554 46899985

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.3e-18  Score=156.18  Aligned_cols=114  Identities=25%  Similarity=0.415  Sum_probs=100.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEEC-----CeEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  543 (713)
                      +|+|.++++|.              +..+.|+|.|++|+||+..+..+.+||||++++.     ..+++|+++++|.||.
T Consensus         1 rG~l~l~l~Y~--------------~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (137)
T d2cm5a1           1 RGKILVSLMYS--------------TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE   66 (137)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCE
T ss_pred             CcEEEEEEEEE--------------CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCc
Confidence            49999999998              7789999999999999999989999999999983     2467999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~  596 (713)
                      |||+|.|++.     ...|.|.|||++.++++++||++.+++..+            .++.+..+|++|+
T Consensus        67 wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             cceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceecc
Confidence            9999999984     468999999999999999999999999753            2445667777775

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.4e-18  Score=157.25  Aligned_cols=114  Identities=29%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEE--CC---eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GD---LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~---~~~kT~v~~~t~nP~  543 (713)
                      +|+|.++++|.              +..+.|.|.|++|+||++.+..+.+||||++++  ++   .+++|++++++.||.
T Consensus         1 rG~l~~sl~Y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~   66 (138)
T d1w15a_           1 RGELLVSLCYQ--------------STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV   66 (138)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEE
T ss_pred             CcEEEEEEEEc--------------CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCe
Confidence            49999999999              677999999999999999999999999999998  22   356899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  596 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~  596 (713)
                      |||+|.|.+.     ...|.|+|||+|.++++++||++.|++...            .++.+..+||+|.
T Consensus        67 wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~  136 (138)
T d1w15a_          67 FNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC  136 (138)
T ss_dssp             EEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             ECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence            9999999973     346999999999999999999999998753            2456677888885

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=4.1e-18  Score=155.37  Aligned_cols=118  Identities=23%  Similarity=0.324  Sum_probs=104.4

Q ss_pred             ccEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC--CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCce
Q 005132          365 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  441 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~--~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~  441 (713)
                      .|.|.|+|++|++|+..+..|.+||||++++++..++|+++  ++.||.|||+|.|.+.+....|.|+|||++.+ +|++
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~   88 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDA   88 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCE
Confidence            47999999999999999989999999999999988899988  58899999999999988778899999999988 8899


Q ss_pred             eEEEEEeccccccC-Ceeeeeeeceec--ccceEEEEEEEEeec
Q 005132          442 MGSARVNLEGLVEG-SVRDIWVPLEKV--NTGELRLQIEATRVD  482 (713)
Q Consensus       442 lG~~~i~l~~l~~~-~~~~~w~~L~~~--~~G~I~l~l~~~~~~  482 (713)
                      ||.+.|+|.++... .....|+++...  ..|+|++++.|.|..
T Consensus        89 iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          89 VGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            99999999998654 446779988643  369999999999754

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=155.68  Aligned_cols=114  Identities=24%  Similarity=0.359  Sum_probs=102.4

Q ss_pred             cEEEEEEEEeEcCCCC---CCCCCCCcEEEEEECC---eEEeccCC-CCCCCccceEEEEEEeCC-CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPK---DKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~---~~~g~~dpyv~v~l~~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|+||+..   +..|.+||||+++++.   +.++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++..
T Consensus         3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~   82 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence            5899999999999864   3457899999999964   67899999 999999999999998775 56899999999888


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeeceecccceEEEEEEEE
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  479 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~  479 (713)
                      +|++||.+.++|.++..+.....||+|.+.+.|+|++++++.
T Consensus        83 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            999999999999999888888999999998899999999875

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=7.6e-18  Score=157.44  Aligned_cols=115  Identities=29%  Similarity=0.490  Sum_probs=102.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCCe
Q 005132          469 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       469 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  543 (713)
                      .|+|.++++|.              +..+.|.|.|++|+||+..+..+.+||||++++..     .+++|++++++.||+
T Consensus        11 ~G~l~~sl~Y~--------------~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~   76 (157)
T d1uowa_          11 LGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY   76 (157)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCE
T ss_pred             eeEEEEEEEEc--------------CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcc
Confidence            69999999998              67799999999999999999999999999999943     346899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec------------CCCCceeeEEEcCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQG  597 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l------------~~~~~~~~w~~L~~  597 (713)
                      |||+|.|++.     ...|.|+|||++.++++++||++.|++...            .++.+..+||+|+.
T Consensus        77 wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_          77 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999984     468999999999999999999999999653            34567789999975

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-18  Score=154.47  Aligned_cols=115  Identities=18%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             CCceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCee
Q 005132          495 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSI  573 (713)
Q Consensus       495 ~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~d~~i  573 (713)
                      ..++|.|+|++|++++..+..+.+||||++.+++++++|+++++|.||.|||.|.|++. ...|.|+|||+|.+++|++|
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEE
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEecceeEEEEEEccCCCCCceE
Confidence            34889999999999999888889999999999999999999999999999999999984 67899999999999999999


Q ss_pred             EEEEEEceecC---CCC--ceeeEEEcCC-----CCCcEEEEEEEE
Q 005132          574 GDCVVEYQRLP---PNQ--MADKWIPLQG-----VRKGEIHVLITR  609 (713)
Q Consensus       574 G~~~i~L~~l~---~~~--~~~~w~~L~~-----~~~G~i~~~l~~  609 (713)
                      |++.++|.++.   .+.  ....|+.|.+     ...|+|.+.+++
T Consensus        84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            99999998873   222  2344555532     234999988876

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=152.95  Aligned_cols=120  Identities=25%  Similarity=0.320  Sum_probs=100.3

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCC-CCCcEEEEEE---CCeEEEEEeeeCCCCCe
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRG-TSDPYVKVQY---GDLKKRTKVIFKTLNPQ  543 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g-~~DPyv~v~~---~~~~~kT~v~~~t~nP~  543 (713)
                      +-|+|.+++.|.              +....|+|+|++|+||+..+..+ .+||||++++   ...+++|++++++.||.
T Consensus         7 ~~G~l~~sl~Y~--------------~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~   72 (138)
T d1ugka_           7 GLGTLFFSLEYN--------------FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA   72 (138)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE
T ss_pred             CCEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCc
Confidence            359999999998              66789999999999999887655 5799999999   44678999999999999


Q ss_pred             eeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCC-CceeeEEEcC-CCCCc
Q 005132          544 WHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQ-GVRKG  601 (713)
Q Consensus       544 wne~~~f~-v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~-~~~~~w~~L~-~~~~G  601 (713)
                      |||+|.|. +.     ...|+|+|||+|.+++|++||++.|+|+++... .....|..+. ++.+|
T Consensus        73 wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~pssG  138 (138)
T d1ugka_          73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSSG  138 (138)
T ss_dssp             EEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSSCC
T ss_pred             eeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCCCCCC
Confidence            99999996 32     457999999999999999999999999998643 3455666654 33344

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=152.86  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=101.1

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC----eEEEEEeeeCCCCCe
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQ  543 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~  543 (713)
                      ..++|++++.|.              ...+.|.|+|++|++|+   ..|.+||||++++.+    ..++|++++++.||+
T Consensus        11 ~~~~l~~sl~y~--------------~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~   73 (138)
T d1wfma_          11 QAPKLHYCLDYD--------------CQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT   73 (138)
T ss_dssp             SCCEEEEEEEEE--------------TTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE
T ss_pred             cCCEEEEEEEEC--------------CCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCce
Confidence            358999999998              67799999999999995   356899999999943    357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceecCCCCceeeEEEcCCC
Q 005132          544 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  598 (713)
Q Consensus       544 wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  598 (713)
                      |||+|.|++.     ...|.|+|||++.++++++||++.|+|.++........|++|...
T Consensus        74 wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             EeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            9999999973     467999999999999999999999999999888888999999753

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.1e-17  Score=148.60  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=92.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC--CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|+||+.++..|.+||||++++     +...++|+++ ++.||.|||.|.|.+...  ...|.|+|||++..
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~   94 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT   94 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence            489999999999999999999999999998     4568999999 999999999999998664  45899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceecccce
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  471 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  471 (713)
                       +|++||.+.+++.++..+ ..+.||+|...+.|+
T Consensus        95 ~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~ge  128 (132)
T d1a25a_          95 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE  128 (132)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred             CCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCCc
Confidence             789999999999998654 457899998766664

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.70  E-value=7.7e-17  Score=146.64  Aligned_cols=113  Identities=19%  Similarity=0.390  Sum_probs=97.7

Q ss_pred             ccEEEEEEEEeEcCCCCC-----------CCCCCCcEEEEEECCeE-EeccCC-CCCCCccceEEEEEEeCCCceEEEEE
Q 005132          365 GRKINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKC  431 (713)
Q Consensus       365 ~g~L~V~I~~a~~L~~~~-----------~~g~~dpyv~v~l~~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V  431 (713)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++++. .+|+++ ++.||.|||+|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            379999999999998643           45789999999998864 689988 99999999999999864 56899999


Q ss_pred             EEecCC-CCceeEEEEEeccccccCC--eeeeeeeceecccceEEEEEEEEe
Q 005132          432 YNEEIF-GDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGELRLQIEATR  480 (713)
Q Consensus       432 ~d~~~~-~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~I~l~l~~~~  480 (713)
                      ||++.+ +|++||.+.++|+++..+.  ..+.|++|+.  .|+|++.+.+.+
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~  133 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEe
Confidence            999988 7899999999999997654  4678999985  699999998874

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.3e-18  Score=157.79  Aligned_cols=102  Identities=31%  Similarity=0.467  Sum_probs=92.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEEEccCccccccCCCCCcEEEEEECC-----eEEEEEeeeCCCCC
Q 005132          468 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  542 (713)
Q Consensus       468 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  542 (713)
                      ..|+|.++++|.              +..+.|.|+|++|+||+..+..+.+||||+|++.+     .+++|+++++|.||
T Consensus         5 ~~G~l~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P   70 (145)
T d1dqva2           5 DLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNP   70 (145)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSC
T ss_pred             cceEEEEEEEEc--------------CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCc
Confidence            469999999999              77899999999999999999999999999999954     25789999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEceec
Q 005132          543 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  583 (713)
Q Consensus       543 ~wne~~~f~v~-----~~~l~i~V~D~d~~~~d~~iG~~~i~L~~l  583 (713)
                      .|||+|.|++.     ...|.|+|||++.+++|++||++.|+++.+
T Consensus        71 ~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2          71 TYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             EEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred             eecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence            99999999874     467999999999999999999999999765

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.3e-17  Score=145.83  Aligned_cols=110  Identities=20%  Similarity=0.319  Sum_probs=87.9

Q ss_pred             ceEEEEEEEccCccc--cccCCCCCcEEEEEEC-----CeEEEEEeeeCC-CCCeeeeEEEEecC---CCeEEEEEEECC
Q 005132          497 GWIELVIVEARDLVA--ADLRGTSDPYVKVQYG-----DLKKRTKVIFKT-LNPQWHQTLEFPDD---GSPLTLHVRDHN  565 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~--~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t-~nP~wne~~~f~v~---~~~l~i~V~D~d  565 (713)
                      ..|+|+|++|++|+.  .+.++.+||||++++.     ..+++|++++++ +||.|||+|.|.+.   ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999975  4567889999999993     468899987654 79999999999873   467999999999


Q ss_pred             CCCCCCeeEEEEEEceecCCCCceeeEEEcCCCC-----CcEEEEEEEE
Q 005132          566 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  609 (713)
Q Consensus       566 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~~~l~~  609 (713)
                      .+++|++||++.|+|..+..+   .+|++|.+..     .+.|.+.|++
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            999999999999999999765   4689986433     3566777665

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.1e-16  Score=143.95  Aligned_cols=101  Identities=25%  Similarity=0.438  Sum_probs=91.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|+||+.++..|.+||||++++   ++..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            489999999999999999999999999998   4567999999 999999999999987543   57899999999888 


Q ss_pred             CCceeEEEEEeccccccCCeeeeeeecee
Q 005132          438 GDENMGSARVNLEGLVEGSVRDIWVPLEK  466 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  466 (713)
                      ++++||.+.++|.++..+.....||+|+.
T Consensus       114 ~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            78899999999999988887889999974

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4.8e-16  Score=139.11  Aligned_cols=96  Identities=17%  Similarity=0.315  Sum_probs=83.8

Q ss_pred             ceEEEEEEEccCccccccCCCCCcEEEEEECCeEEEEEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 005132          497 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  574 (713)
Q Consensus       497 ~~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~D~d~~~~d~~iG  574 (713)
                      +.|.|+|.+|++|.+.+   ..||||++++++.+.+|++++ +.||.|||+|.|++.  ...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            57999999999999876   579999999999999999886 459999999999984  56899999999876 589999


Q ss_pred             EEEEEceecCC--CCceeeEEEcCC
Q 005132          575 DCVVEYQRLPP--NQMADKWIPLQG  597 (713)
Q Consensus       575 ~~~i~L~~l~~--~~~~~~w~~L~~  597 (713)
                      ++.|+|+++..  .....+||+|..
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEEEehhhccCCCCCCCeeEECCc
Confidence            99999999853  345678999963

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.1e-16  Score=141.11  Aligned_cols=114  Identities=15%  Similarity=0.239  Sum_probs=94.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCC-CCceeE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  443 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~lG  443 (713)
                      +.|.|+|++|++++.++..+.+||||++.++++.++|+++ ++.||.|||.|+|.+. +...|.|+|||++.+ +|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-ecceeEEEEEEccCCCCCceEE
Confidence            5899999999999988888899999999999999999999 9999999999999975 457899999999998 889999


Q ss_pred             EEEEeccccccC---C--eeeeeeeceec-----ccceEEEEEEEEe
Q 005132          444 SARVNLEGLVEG---S--VRDIWVPLEKV-----NTGELRLQIEATR  480 (713)
Q Consensus       444 ~~~i~l~~l~~~---~--~~~~w~~L~~~-----~~G~I~l~l~~~~  480 (713)
                      ++.++|.++...   .  ....|+.+.+.     ..|+|.+.+.+..
T Consensus        85 ~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          85 TAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             EEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            999999998642   1  23344555442     3588888887654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.1e-16  Score=138.02  Aligned_cols=98  Identities=19%  Similarity=0.298  Sum_probs=86.3

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeEEeccCCCCCCCccceEEEEEEeCCCceEEEEEEEecCCCCceeEEE
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA  445 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~lG~~  445 (713)
                      +.|.|+|++|++|.+++   ..||||++.+++.+.+|+++++.||.|||.|.|.+..+...|.|+|||++..+|++||++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~   78 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV   78 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecCCCCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEE
Confidence            47999999999998765   579999999999999998875559999999999998888899999999988899999999


Q ss_pred             EEeccccccCC--eeeeeeecee
Q 005132          446 RVNLEGLVEGS--VRDIWVPLEK  466 (713)
Q Consensus       446 ~i~l~~l~~~~--~~~~w~~L~~  466 (713)
                      .|+|+++....  ....||+|..
T Consensus        79 ~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          79 WIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEehhhccCCCCCCCeeEECCc
Confidence            99999997543  3568999964

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.6e-16  Score=139.26  Aligned_cols=102  Identities=23%  Similarity=0.337  Sum_probs=86.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC-
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  437 (713)
                      +.|.|+|++|+||+.++..|.+||||++++   +.+.++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        18 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~   97 (130)
T d1dqva1          18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   97 (130)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCC
Confidence            489999999999999999999999999999   3567999999 999999999999997653   56799999999987 


Q ss_pred             CCceeEEEEEecccc-ccCC-eeeeeeeceec
Q 005132          438 GDENMGSARVNLEGL-VEGS-VRDIWVPLEKV  467 (713)
Q Consensus       438 ~d~~lG~~~i~l~~l-~~~~-~~~~w~~L~~~  467 (713)
                      +|++||++.|++... .... ....|++|.+.
T Consensus        98 ~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          98 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            899999999986543 3332 35579999863

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.6e-16  Score=145.74  Aligned_cols=102  Identities=24%  Similarity=0.460  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--------------CeEEeccCC-CCCCCccceEEEEEEeC----CCce
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--------------KIVQRTRTA-HSPNHVWNQKFELDEIG----GGEC  426 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~--------------~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~  426 (713)
                      |.|.|+|++|+||+.++..|.+||||++++.              +..++|+++ ++.||.|||.|.|....    ....
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   97 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCE
Confidence            4899999999999999999999999999982              123689999 99999999999998443    2568


Q ss_pred             EEEEEEEecCC-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          427 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       427 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      |.|+|||++.+ +|++||++.|+|.++..+.....||+|+..
T Consensus        98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            99999999988 789999999999999888778899999864

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.3e-15  Score=133.61  Aligned_cols=99  Identities=24%  Similarity=0.419  Sum_probs=81.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEE-eCC---CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDE-IGG---GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v-~~~---~~~l~i~V~d~~  435 (713)
                      +.|.|+|++|+||+..+..+.+||||++++     +...++|+++ ++.||.|||+|.|.. ...   ...|.|+|||++
T Consensus        14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~   93 (125)
T d2bwqa1          14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   93 (125)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence            489999999999999888999999999998     2347899999 999999999999973 332   457999999988


Q ss_pred             CC---CCceeEEEEEeccccccCCeeeeeeece
Q 005132          436 IF---GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       436 ~~---~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      ..   ++++||++.++|+++..... ..||+|+
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          94 RVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             ------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            75   45699999999999876554 5799985

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.4e-15  Score=132.82  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECCe-----EEEEEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASS  571 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~D~d~~~~d~  571 (713)
                      .+.+.++++..+  ...++.+||||+|++.+.     .++|+++++|+||+|||+|.|.+. ...|.|.|||+|    |+
T Consensus         6 ~~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~~~l~i~V~d~d----d~   79 (123)
T d1bdya_           6 RISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTTCEEEEEEEEET----TE
T ss_pred             EEEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccccEEEEEEEEcc----cc
Confidence            344444544444  445789999999999552     467999999999999999999985 678999999986    67


Q ss_pred             eeEEEEEEceec-----CCCCceeeEEEcCCCCCcEEEEEEEE
Q 005132          572 SIGDCVVEYQRL-----PPNQMADKWIPLQGVRKGEIHVLITR  609 (713)
Q Consensus       572 ~iG~~~i~L~~l-----~~~~~~~~w~~L~~~~~G~i~~~l~~  609 (713)
                      ++|.+.+++..+     ..+...+.|++|+  ++|+|+++++|
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~  120 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQY  120 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEE
Confidence            999999999877     3466788999997  78999999998

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.2e-14  Score=131.08  Aligned_cols=111  Identities=19%  Similarity=0.275  Sum_probs=86.7

Q ss_pred             cEEEEEEEEeEcCCC--CCCCCCCCcEEEEEE-----CCeEEeccCC--CCCCCccceEEEEEEeCC-CceEEEEEEEec
Q 005132          366 RKINVTVVEGKDLMP--KDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNEE  435 (713)
Q Consensus       366 g~L~V~I~~a~~L~~--~~~~g~~dpyv~v~l-----~~~~~kT~~~--~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~  435 (713)
                      ..|.|+|++|++|+.  .+..+.+||||++++     +...++|+++  ++.||.|||+|+|.+..+ ...|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            379999999999964  446788999999998     3568999988  457999999999987664 568999999999


Q ss_pred             CC-CCceeEEEEEeccccccCCeeeeeeeceecc-----cceEEEEEEEE
Q 005132          436 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  479 (713)
Q Consensus       436 ~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~  479 (713)
                      .. +|++||++.++|..+..+   .+|++|.+..     .+.|.+.+.+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            88 789999999999998654   4688886532     34566666553

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3e-14  Score=129.62  Aligned_cols=87  Identities=25%  Similarity=0.342  Sum_probs=71.0

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+.++..+.+||||++++  ++   ..++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~   94 (138)
T d1w15a_          15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER   94 (138)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence            489999999999999998899999999998  32   35789999 999999999999987553   4579999999998


Q ss_pred             C-CCceeEEEEEecccc
Q 005132          437 F-GDENMGSARVNLEGL  452 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l  452 (713)
                      + ++++||++.+++...
T Consensus        95 ~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          95 GSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TSCCEEEEEEEESTTCC
T ss_pred             CCCCCEEEEEEEcchhC
Confidence            8 899999999998764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6e-14  Score=127.32  Aligned_cols=100  Identities=21%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-----CCeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-----~~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+..+.+||||++++     ....+||+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~   94 (137)
T d2cm5a1          15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI   94 (137)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC
Confidence            589999999999999888899999999998     2347899999 999999999999997653   5689999999988


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                      . ++++||++.+++.++..  ....|++|...
T Consensus        95 ~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~  124 (137)
T d2cm5a1          95 GKSNDYIGGCQLGISAKGE--RLKHWYECLKN  124 (137)
T ss_dssp             SSCCEEEEEEEEETTCCHH--HHHHHHHHHHC
T ss_pred             CCCCCEEEEEEeCccccCc--chhhhhhHhhC
Confidence            7 88999999999987532  22356665543

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-13  Score=125.68  Aligned_cols=99  Identities=19%  Similarity=0.284  Sum_probs=81.5

Q ss_pred             cEEEEEEEEeEcCCCCCCCC-CCCcEEEEEE---CCeEEeccCC-CCCCCccceEEEEEEeCC----CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSG-KCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g-~~dpyv~v~l---~~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+.++..+ .+||||++++   +...++|+++ ++.||.|||+|.|.....    ...|+|+|||++.
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence            37999999999999887665 4799999999   4568999999 999999999999974332    4589999999998


Q ss_pred             C-CCceeEEEEEeccccccCC-eeeeeeec
Q 005132          437 F-GDENMGSARVNLEGLVEGS-VRDIWVPL  464 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~-~~~~w~~L  464 (713)
                      + ++++||++.++|.++.... ....|..+
T Consensus       102 ~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_         102 FSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             CCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            8 8999999999999986433 34445444

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.9e-14  Score=127.59  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=85.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC----CeEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecCC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  437 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  437 (713)
                      +.|.|+|++|++|+.   .|.+||||++++.    ...++|+++ ++.||.|||.|.|.+...   ...|.|+|||++.+
T Consensus        26 ~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          26 AELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeeccc
Confidence            489999999999953   5678999999992    236889999 999999999999997653   57899999999988


Q ss_pred             -CCceeEEEEEeccccccCCeeeeeeeceec
Q 005132          438 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV  467 (713)
Q Consensus       438 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  467 (713)
                       ++++||++.|+|.++......+.|++|...
T Consensus       103 ~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             ccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence             789999999999999777777899999864

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.7e-13  Score=127.28  Aligned_cols=102  Identities=21%  Similarity=0.331  Sum_probs=85.9

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CC---eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l--~~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      +.|.|+|++|+||+..+..+.+||||++++  ++   ..++|+++ ++.||+|||+|.|.+..+   ...|.|+|||++.
T Consensus        25 ~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~  104 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC
Confidence            489999999999999898999999999998  22   25689999 999999999999997664   4589999999998


Q ss_pred             C-CCceeEEEEEecccc----------c--cCCeeeeeeeceec
Q 005132          437 F-GDENMGSARVNLEGL----------V--EGSVRDIWVPLEKV  467 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l----------~--~~~~~~~w~~L~~~  467 (713)
                      + ++++||++.|++...          .  ......+|++|+..
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            8 899999999999763          2  22345789998764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6e-13  Score=118.01  Aligned_cols=107  Identities=9%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCCCceEEEEEEEecCCCCce
Q 005132          368 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDEN  441 (713)
Q Consensus       368 L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~  441 (713)
                      ++|.+....--+.....+.+||||+|++++     ..++|+++ +|.||+|||+|+|.+.+ ...+.|.|||++   +++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~   80 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDP   80 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TEE
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---ccc
Confidence            444444432223355678999999999943     24678888 99999999999999754 578999999986   789


Q ss_pred             eEEEEEecccccc-----CCeeeeeeeceecccceEEEEEEEEe
Q 005132          442 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEATR  480 (713)
Q Consensus       442 lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~~~  480 (713)
                      +|.+.+++.++..     +...+.|++|+  +.|+|+++++|..
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            9999999998863     45678999997  4799999999863

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.4e-13  Score=126.20  Aligned_cols=99  Identities=22%  Similarity=0.324  Sum_probs=81.2

Q ss_pred             cEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eEEeccCC-CCCCCccceEEEEEEeCC---CceEEEEEEEecC
Q 005132          366 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  436 (713)
Q Consensus       366 g~L~V~I~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  436 (713)
                      |.|.|+|++|+||+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        20 ~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~   99 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC   99 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred             CEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC
Confidence            58999999999999888889999999999832     25789999 999999999999987542   5689999999988


Q ss_pred             C-CCceeEEEEEeccccccCCeeeeeeece
Q 005132          437 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  465 (713)
Q Consensus       437 ~-~d~~lG~~~i~l~~l~~~~~~~~w~~L~  465 (713)
                      . ++++||.+.|++..+... ....|++|.
T Consensus       100 ~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2         100 IGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             SSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             CCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence            8 789999999999876322 123455543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.2e-12  Score=111.11  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             eEEEEEEEccCccccccCCCCCcEEEEEECC------eEEEEEe--eeCCCCCeeeeE-EEEe-cC---CCeEEEEEEEC
Q 005132          498 WIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKV--IFKTLNPQWHQT-LEFP-DD---GSPLTLHVRDH  564 (713)
Q Consensus       498 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v--~~~t~nP~wne~-~~f~-v~---~~~l~i~V~D~  564 (713)
                      .|+|+|++|++|+..    ..||||+|++-+      .+.+|++  ..+++||.|||. |.|. +.   -..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999765    479999999932      3444544  467899999975 5553 32   45799999998


Q ss_pred             CCCCCCCeeEEEEEEceecCCCCceeeEEEcCCCCCcEEEEE
Q 005132          565 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVL  606 (713)
Q Consensus       565 d~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~~~  606 (713)
                      |    |++||++.+||+.+..+   .+|++|.+.....+..+
T Consensus        78 d----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~  112 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMP  112 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEE
T ss_pred             C----CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCc
Confidence            6    78999999999999776   58888876554444333

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.9e-10  Score=100.10  Aligned_cols=99  Identities=23%  Similarity=0.367  Sum_probs=73.4

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C-----CeEEeccCC---CCCCCccceE-EEEE-EeCC-CceEEEEEEEe
Q 005132          367 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G-----KIVQRTRTA---HSPNHVWNQK-FELD-EIGG-GECLMVKCYNE  434 (713)
Q Consensus       367 ~L~V~I~~a~~L~~~~~~g~~dpyv~v~l-~-----~~~~kT~~~---~t~nP~wne~-f~f~-v~~~-~~~l~i~V~d~  434 (713)
                      +|.|+|++|++|+..    ..||||+|++ |     ...++|++.   ++.||.|||. |.|. +..+ ...|+|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999764    4799999998 2     234555543   7899999976 4443 3333 45899999998


Q ss_pred             cCCCCceeEEEEEeccccccCCeeeeeeeceecccceEEEE
Q 005132          435 EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ  475 (713)
Q Consensus       435 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~I~l~  475 (713)
                      +   |++||++.+|++.+..+   .++++|.+.....+..+
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~  112 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMP  112 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEE
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCc
Confidence            5   79999999999998665   47788877543334433