Citrus Sinensis ID: 005134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--
Protein Sequence
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVNVEGTTQP
Secondary Structure (PSIPRED)
cccccEEccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHcccHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcEEEEEEEEcccccEEEEEEEEccccEEEEEEEcEEEEcccccHHHHcccccccccccccccEEEEEEEccccccccccccccEEEEEEccccEEEEEEEEccccEEEEEEEccccccccccccHHHHHHHHHHHHccccccccEEEEccccccEEEEcccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHcccccccccccHHHHccccccHHHHHHHccccccEEEEccccEEEEEccccccccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHcccHHHHHHHHcccHHHcccEEEEEccccHHHcccccccccccHccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHccccEEEEcEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEEccccccHHHHHHccccccccccccEEEEEEEcHHHHHHHccccccEEEEEEcccccEEEEEEccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEcccHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHHHHHHHcccccccccccEcccEEccccEEcccccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccEEEEccccEEEEEccccccccHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MRIAAFTRglncfsriktfpypygytqcralsdsktivsneAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKnkafsthpqahfiNNRYALVFRKLDGLAEeiersqppvdlwRKFIyctsvtgpilgsvdhmqpqdfekvvspvsvahFSQYKLNKLLLKQLEKLNFKIctsegteglhNHLLQGReilmghecvsvsatDQCINVIASFLkegkcterniqcniligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKdlgdyllnerpgmlffIFNTEAIGVLVAhdlkegefilqvpfyppqqnledfspEICEKLIFKLVgwelsdidvidikpwVMHAEVAEKFLCCYNQIIlagdachrfppaggfgmntgvqdaHNLAWKIASVLKdiapasilntyeterkpiaefNTALSVQNFRAAmevpsalgldptiaNSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSEsllnesnplgssRLAKLRHIFEEGkslqlqfpaedlgfrylkgalvpdsncevgapeaptghrrdfvpsanpgsrlphmnvRVLSTEIIStldlvsgdkvEFLLIIAPVEESYHLARAALKVaedfkvptkvcvlwpagttnevefrsaaelapwknyidveevkrssdsLSWWRICKmtdmgailvrpddhiawrsksgvsgnpkLEMEMAFSAVLgikpvnvegttqp
Flexible Loop (DISEMBL)
mriaaftrglncfsriKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAfsthpqahfinnRYALVFRKLDGLAEEiersqppvdlWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFlkegkcteRNIQCNIligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSesllnesnplgSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGApeaptghrrdfvpsanpgsrlphMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALkvaedfkvPTKVCVLwpagttnevefrsaaelapwknyidveevkrssdslsWWRICKMTDMGAILVRPDDHIAWrsksgvsgnpKLEMEMAFSAvlgikpvnvegttqp
Low Complexity Region (SEG)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYklnklllkqleklnfkICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQlsesllnesnplgssRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVNVEGTTQP
Disordered region (IsUnstruct)
**IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQL****************AKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNC**************************HMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRS*************MAFSAVLGIK**********
Disordered Region (DISOPRED)
*********LNC*S*****************************VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVL*************
Disordered Region (DISEMBL)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVNVEGTTQP
Disordered Region (DISPRO)
*RIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDS*TIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGI***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVNVEGTTQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	712	2.2.26 [Sep-21-2011]
P42534	627	Putative polyketide hydro	yes	no	0.501	0.569	0.303	5e-43
Q05355	555	Putative polyketide hydro	N/A	no	0.483	0.619	0.312	2e-40
Q8KN28	586	2,4-dichlorophenol 6-mono	yes	no	0.804	0.977	0.248	9e-40
P39888	572	Tetracenomycin polyketide	N/A	no	0.507	0.631	0.289	2e-32
P27138	598	2,4-dichlorophenol 6-mono	no	no	0.762	0.908	0.249	3e-32
P31020	607	Phenol 2-monooxygenase OS	N/A	no	0.764	0.896	0.248	2e-31
Q9S158	589	3-(3-hydroxy-phenyl)propi	yes	no	0.463	0.560	0.272	3e-26
Q476N1	618	3-(3-hydroxy-phenyl)propi	no	no	0.463	0.533	0.262	2e-23
Q13QI0	622	3-(3-hydroxy-phenyl)propi	no	no	0.460	0.527	0.260	8e-23
A4T8B6	569	3-(3-hydroxy-phenyl)propi	yes	no	0.528	0.660	0.237	8e-22

>sp|P42534|HYDL_STRCO Putative polyketide hydroxylase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=SCO5321 PE=3 SV=2

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 191/385 (49%), Gaps = 28/385 (7%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++ +++E++   S HP+    N R   +FR + G   
Sbjct: 21  VPVLVVGGSLVGLSTSVFLGRLGVRHTLVERHAGTSIHPRGRGNNVRTMEIFR-VAGTEP 79

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSV-DHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +I R+   +      +   ++ G     +   + P       SP S    SQ  L   LL
Sbjct: 80  DIRRAAATLADNHGILQAPTLAGDAGEWLFKQIDPGGGLARFSPSSWCLCSQNDLEPELL 139

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
                L                   G ++  G E +S  A  + +  I    + G+ T  
Sbjct: 140 THATNL-------------------GGDLRFGTELLSFEADTEGVTAIVKSRETGEHT-- 178

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            I+ + L+  DG  S VR+ +GI   G  DL   VS+ F S+ L D ++ +R  ++ ++ 
Sbjct: 179 TIRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSITFRSRRLAD-VVGDRRFIVCYLT 237

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
           +  A G L+  D +E  ++   P++P Q + +EDF+ E C   I + +G    D+++   
Sbjct: 238 DENADGALLPVDNRE-NWVFHAPWHPEQGETVEDFTDERCAAHIRRAIGDPDLDVEITGK 296

Query: 342 KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA 401
            PW     VA  +     +++LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL+  A
Sbjct: 297 APWHAAQRVARSYRS--GRVLLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLEGWA 354

Query: 402 PASILNTYETERKPIAEFNTALSVQ 426
             ++L+TY+TER+P+AE  +A +  
Sbjct: 355 GEALLDTYDTERRPVAEATSARAAH 379

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptococcus coelicolor.
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|Q05355|HYDL_STRHA Putative polyketide hydroxylase OS=Streptomyces halstedii GN=schC PE=3 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 182/378 (48%), Gaps = 34/378 (8%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++  ++E++   S HP+    N R   V+R   G+ +
Sbjct: 15  VPVLVVGGSLVGLSTSVFLGRLGVRHMLVERHAGTSVHPRGRGNNVRTMEVYRAA-GVEQ 73

Query: 104 EIERSQPPVDLWRKFIYCTSVTGP----ILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
            I R+   +      +   S+ G     +L  +D   P       SP S    SQ  L  
Sbjct: 74  GIRRAAATLAGNHGILQTPSLVGDEGEWLLRDID---PGGGLARFSPSSWCLCSQNDLEP 130

Query: 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC 219
           +LL    +L                   G EI    E  S       +  +    + G+ 
Sbjct: 131 VLLDHAVEL-------------------GGEIRFSTELQSFEQDPAGVTAVIKSRRSGEH 171

Query: 220 TERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279
           T   ++ + L+  DG  S VR+ +GI   G  DL   VSV F S+ L +++  +R  ++ 
Sbjct: 172 T--TVRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSVTFRSRRLAEFV-GDRHFIVC 228

Query: 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYP-PQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
           ++ N EA G L+  D +E  ++   P+YP   + LEDF+ E C   I + VG    D+++
Sbjct: 229 YLTNPEADGALLPVDNRE-NWVFHAPWYPRAARPLEDFTDERCADHIRRAVGVPDLDVEI 287

Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
               PW     VA ++     ++ LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL 
Sbjct: 288 TGKAPWHAAQRVARQYRA--GRVFLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLG 345

Query: 399 DIAPASILNTYETERKPI 416
             A   +L+TY+ ER+P+
Sbjct: 346 GWAGDGLLDTYDAERRPV 363

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces halstedii.

Streptomyces halstedii (taxid: 1944)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8KN28|TFDB_DELAC 2,4-dichlorophenol 6-monooxygenase OS=Delftia acidovorans GN=tfdB PE=1 SV=3

 Score =  165 bits (418), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 170/683 (24%), Positives = 274/683 (40%), Gaps = 110/683 (16%)

Query: 31  LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           +++  T++  +    VL+VG+GP G   ++LL   G+K   + K    S  P++H  N R
Sbjct: 1   MNEKATVIETD----VLVVGSGPAGAASTLLLATYGVKTLCVSKYATTSRTPRSHITNQR 56

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV----DHMQPQDFEKVVSP 146
              V R L GL  E E    P +L  + +YCTS+ G  LG V     H Q +   ++ SP
Sbjct: 57  TMEVMRDL-GLELECEAMASPAELMGENVYCTSLVGDELGRVLTWGTHPQRRADYELASP 115

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +    Q  L  +++    +                   +G ++    E VS+   +  
Sbjct: 116 THMCDLPQNLLEPIMINHAAR-------------------RGADVRFHTEFVSLKQDE-- 154

Query: 207 INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDL 266
             V A+        + +I+   LIG DGA S V   VG+ + G+  +   ++V F   DL
Sbjct: 155 TGVTATVRDHLLDRQYDIRAKYLIGADGANSQVVDQVGLPMEGKMGVSGSINVVF-EADL 213

Query: 267 GDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE 322
             Y+   RP +L+++     +   +G+ V   ++     L +  Y       D +     
Sbjct: 214 TKYV-GHRPSVLYWVIQPGSSVGGLGIGVIRMVRPWNKWLCIWGYDIAGGPPDLNEAHAR 272

Query: 323 KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382
           +++  L+G     + +     W ++   A +     N++   GDA HR PP  G G NT 
Sbjct: 273 QIVHSLLGDSTIPVKIESTSTWTVNDMYATRLFD--NRVFCMGDAVHRHPPTNGLGSNTS 330

Query: 383 VQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDP 442
           +QDA NL WK++ VL+  A   +L TY  ER P+A                         
Sbjct: 331 IQDAFNLCWKLSHVLQGKAGPELLATYNEERAPVAR------------------------ 366

Query: 443 TIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHI 502
                V Q  N+  G   P +L    L       + Q + + L E +P    + A LR  
Sbjct: 367 ----QVVQRANKSLGD-FPPILAALGLFDTKDPEQMQRNIARLKEQSPEAQEQRAALRAA 421

Query: 503 FEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRD----FVPSANPGSRL 558
             +G          ++  RY   A+VPD     G P+   G RRD       S  PG+ +
Sbjct: 422 I-DGTQYVYNAHGVEMNQRYQSAAIVPD-----GTPDP--GFRRDSELYHAHSGRPGAPV 473

Query: 559 PHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLW 618
           PH+ V       +STLDL    +   L  IA          AA+  AE   +   V ++ 
Sbjct: 474 PHVWV-TRHGRRVSTLDLCGKGRFSLLSGIA----GSPWVEAAVHAAESLGIDLDVHIIG 528

Query: 619 PAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR 678
           P     ++          + ++  V E++ S               GA+LVRPD+ I WR
Sbjct: 529 PGQELEDL----------YGDFARVREIEES---------------GALLVRPDNFICWR 563

Query: 679 SKSGVSGNPKLEMEMAFSAVLGI 701
           +     G+   E+  A   VL +
Sbjct: 564 AMRWQEGSGD-ELRAALKRVLSV 585

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Delftia acidovorans (taxid: 80866)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|P39888|TCMG_STRGA Tetracenomycin polyketide synthesis hydroxylase TcmG OS=Streptomyces glaucescens GN=tcmG PE=3 SV=1

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 178/394 (45%), Gaps = 33/394 (8%)

Query: 37  IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR 96
           I+S E V PVLIVG G  GL  ++ L++ G+ C ++EK++  +   +A  I++R   + R
Sbjct: 11  ILSTEEV-PVLIVGGGLTGLSAALFLSQHGVSCRLVEKHRGTTVLTRASGISSRTMELLR 69

Query: 97  KLDGLAEEIERSQPPVD--LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVS----PVSVA 150
            +      IER    V+   WR+          ++   + +   D E  V+     + V 
Sbjct: 70  GVGLERTVIERGPKLVEGARWRELGQPADQIPWVVIRANGLH--DLENAVTVEEPSLDVG 127

Query: 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVI 210
           H S  +       +LE +        G     N  ++             + T     V 
Sbjct: 128 HLSPTRPYWCGQDRLEPILRDEAVRRGARIDFNTRME-------------AFTADESGVT 174

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270
           A+ + +    +  ++   LI  DG  S VR+ +GI   G   +   +SV F   DL D +
Sbjct: 175 ATIVDQATGEQSTVRARYLIAADGVRSPVRETLGITRTGHGTIGNAMSVLF-KADLRDTV 233

Query: 271 LNERPGMLFFIFNTEAIGVL-------VAHDLKEGEFILQVPFYPPQQNLEDFSPEICEK 323
              R  ++ ++ N +  GVL       V     E  +I    F P + + E F+ E C +
Sbjct: 234 KGRR-FVICYLPNPDEPGVLQLPEVPAVLQLFDEDRWIFGFFFDPRETSPEQFTDERCAQ 292

Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
           +I    G     ++V   +PW M    A  +     ++ LAGDA H  PPAG FG N G+
Sbjct: 293 IIRTATGLPGLPVEVQMARPWEMSHNSARSYRS--GRVFLAGDAAHVHPPAGAFGANGGI 350

Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
           QDAHNLAWK+A+VLK  A  ++L+TYE ER PI 
Sbjct: 351 QDAHNLAWKLAAVLKGTAGDALLDTYEQERLPIG 384

Hydroxylates tetracenomycin A2 at positions C-4, C-4A, and C12A to give tetracenomycin C (TCM C). Hydroxylates as well 9-carboxymethyl-TCM B3 to yield 8-demethyl-TMC C, a side reaction.

Streptomyces glaucescens (taxid: 1907)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P27138|TFDB_CUPPJ 2,4-dichlorophenol 6-monooxygenase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdB PE=3 SV=1

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 162/649 (24%), Positives = 259/649 (39%), Gaps = 106/649 (16%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VL+VG GP G     LL + G++  ++ K    +  P+AH  N R   + R L GL  E 
Sbjct: 9   VLVVGTGPAGASAGALLARYGVRTMLINKYNWTAPTPRAHITNQRTMEILRDL-GLEAEA 67

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSV-----DHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                P DL  +   C S+ G   G +     D  +  D+++  SP S+    Q  L  +
Sbjct: 68  RLYAAPNDLMGENTICASLAGEEFGRIRTWGTDVRRRADYDEC-SPTSMCDLPQNYLEPI 126

Query: 161 LLKQ--LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG- 217
           L+K   L+    +  T                  +GHE        Q  + ++S L++  
Sbjct: 127 LVKSAALDGCKVRFDTE----------------YLGHE--------QDADGVSSRLRDRL 162

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              E  ++   LIG DGA S  R +  +DL  E  + K  S++ L +   D  +  RP +
Sbjct: 163 NGEEFTVRSKYLIGADGANS--RVVSDLDLPLEGTMGKSGSINLLFEADLDRYVAHRPSV 220

Query: 278 LFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           L+++     +   +G+ V   ++     L +  Y  +Q   + S     +++  L+G + 
Sbjct: 221 LYWVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDS 280

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKI
Sbjct: 281 VPLKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKI 338

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLIN 453
           A VL   A  S+L+TY  ER PIA+     + ++      +  ALGL    A S  ++ +
Sbjct: 339 AMVLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGLPQ--AKSADEMKS 396

Query: 454 RVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQF 513
            +A                              E  P   ++  +LR     G +     
Sbjct: 397 NMA---------------------------RRKEPGPEAQAQRTRLREAI-AGTNYVYNA 428

Query: 514 PAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLST-EIIS 572
              ++  RY   A+V D++ +    +    H+     S  PG+ +PH+ V        IS
Sbjct: 429 HGVEMNQRYDSPAIVADNSPDEVFRDVELYHQ----ASTRPGAPMPHVWVYASGDGHRIS 484

Query: 573 TLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAA 632
           T DL           I           AA  V+    V   V ++ P G   E  +   A
Sbjct: 485 TKDLCGKGNFTLFTGIG----GAAWQDAAAAVSRQLGVAVTVRIIGP-GQAYEDHYGDFA 539

Query: 633 ELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKS 681
                                   RI ++ D GAILVRPD H+A+R+ S
Sbjct: 540 ------------------------RISEIIDTGAILVRPDFHVAYRATS 564

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|P31020|PHEA_PSEUE Phenol 2-monooxygenase OS=Pseudomonas sp. (strain EST1001) GN=pheA PE=3 SV=1

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 166/669 (24%), Positives = 270/669 (40%), Gaps = 125/669 (18%)

Query: 34  SKTIVSNEAVV---PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           S T   NE  V    VLIVG+GP G   ++ L+  GI   ++ K +  +  P+AH  N R
Sbjct: 23  SATDTPNETNVVETEVLIVGSGPAGSSAAMFLSTQGISNIMITKYRWTANTPRAHITNQR 82

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTG------PILGSVDHMQPQDFEKVV 144
              + R   G+ +++     P +L    +YC S+ G      P  G+    +  D+E + 
Sbjct: 83  TMEILRDA-GIEDQVLAEAVPHELMGDTVYCESMAGEEIGRRPTWGTRPDRR-ADYE-LA 139

Query: 145 SPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD 204
           SP       Q  L  ++LK                   N  ++G +     E +S +  D
Sbjct: 140 SPAMPCDIPQTLLEPIMLK-------------------NATMRGTQTQFSTEYLSHTQDD 180

Query: 205 QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK 264
           + ++V    L      E  I+   LIG DGA    R  V  D+ G  ++     +     
Sbjct: 181 KGVSV--QVLNRLTGQEYTIRAKYLIGADGA----RSKVAADIGGSMNITFKADLSHWRP 234

Query: 265 DLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPF----YPPQQNLEDFSPEI 320
              D +L   P  + + +       +V       E+++   F     PP+ N ++     
Sbjct: 235 SALDPVLG-LPPRIEYRWPRRWFDRMVR---PWNEWLVVWGFDINQEPPKLNDDE----- 285

Query: 321 CEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF----LCCYNQIILAGDACHRFPPAGG 376
             +++  LVG E  D++++    W  + + A       +CC      AGDA H+ PP+ G
Sbjct: 286 AIQIVRNLVGIEDLDVEILGYSLWGNNDQYATHLQKGRVCC------AGDAIHKHPPSHG 339

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
            G NT +QD++NL WK+A VLK  A   +L TY TER PIA+     +  +      +  
Sbjct: 340 LGSNTSIQDSYNLCWKLACVLKGQAGPELLETYSTERAPIAKQIVTRANGSSSEYKPIFD 399

Query: 437 ALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRL 496
           ALG+  T A +  + + ++A                           L  E++P G+   
Sbjct: 400 ALGV--TDATTNDEFVEKLA---------------------------LRKENSPEGAR-R 429

Query: 497 AKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGS 556
                   + K  +      ++G  Y   A++ D        E P  H +    S  PG 
Sbjct: 430 RAALRAALDNKDYEFNAQGTEIGQFYDSSAVITDGQKRPAMTEDPMLHHQK---STFPGL 486

Query: 557 RLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCV 616
           RLPH  +   + E  ST D+  G +  F +      +++  A AA++VAE   +  K  V
Sbjct: 487 RLPHAWLGD-AKEKYSTHDIAEGTR--FTIFTGITGQAW--ADAAVRVAERLGIDLKAVV 541

Query: 617 LWPAGTTNEVEFRSAAELAPWKN-YIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHI 675
           +               E  P ++ Y D            W R  ++ + G ILVRPD HI
Sbjct: 542 I--------------GEGQPVQDLYGD------------WLRQREVDEDGVILVRPDKHI 575

Query: 676 AWRSKSGVS 684
            WR++S V+
Sbjct: 576 GWRAQSMVA 584

Pseudomonas sp. (strain EST1001) (taxid: 69012)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|Q9S158|MHPA_COMTE 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Comamonas testosteroni GN=mhpA PE=3 SV=1

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 183/385 (47%), Gaps = 55/385 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+GAGPVGL L+  L   G++  V EK      +P+A  I++  +L   +  GL++++
Sbjct: 16  VLIIGAGPVGLTLANTLGMAGVRVIVAEKLPRIIDYPRAIGIDDE-SLRTLQAAGLSDQV 74

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
           +    P   W +F    + +G    S+   +P+  E   S  +   F Q +++ +L + L
Sbjct: 75  QAHITP-HHWMRFY---TASGQCFASI---EPRTDEYGWSRRNA--FIQPQVDDILYRGL 125

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           ++ +                    ++L+GHE  S S  D  I      LK+    ER ++
Sbjct: 126 QRFDQV------------------QVLLGHELHSFSQDDAGITAT---LKDADGVERTLR 164

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-----ERPGMLFF 280
              L+ +DG  S VR+++ +   G     + + V   +  LG   ++     +RP     
Sbjct: 165 AKYLVASDGGNSLVRRMLNVAFEGRTKPNQWIVVDVRNDPLGTPHIDMHCDPQRP----- 219

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E  S PE   +L+ K+V  +   +D I
Sbjct: 220 -----YVSAALPHGIRRFEFMVM-----PGETEEQLSRPENLAQLMRKVVA-DPDKVDYI 268

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A +F    ++I+LAGDA H  P   G G N+G++DA NLAWK+A V+K 
Sbjct: 269 RKRVYTHNARLAAQFRV--DRILLAGDAAHIMPVWQGQGYNSGMRDASNLAWKLAMVVKG 326

Query: 400 IAPASILNTYETERKPIAEFNTALS 424
            A + +L++YE ER+  A     LS
Sbjct: 327 EARSDLLDSYEQERRDHARSMIHLS 351

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|Q476N1|MHPA_CUPPJ 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=mhpA PE=3 SV=1

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 177/385 (45%), Gaps = 55/385 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++ +L   G++ +V+EK      +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANILGLQGVRVTVVEKLDQLIDYPRAIGLDDEALRVFQAI-GLADTL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   +  G    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---TKDGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           +++ F        EGL     +  ++L GH    V A  Q  + ++  +       R I+
Sbjct: 123 DRVLF--------EGLQR--FEHVQVLFGH---GVEAFTQDGHGVSVEVTTSAGRRRTIR 169

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGMLFF 280
              ++G DG  S VR+ + +   G     + + V   +  +G      +  +ERP     
Sbjct: 170 AAYMVGADGGNSIVRRALQVPFEGRTKPNQWIVVDVRNDPVGSPHIYMHCDHERP----- 224

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D I
Sbjct: 225 -----YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPDKVDYI 273

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA+NL WK+A V K 
Sbjct: 274 RKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDANNLGWKLAMVAKG 331

Query: 400 IAPASILNTYETERKPIAEFNTALS 424
           +A   +L+TY  ER+  A     LS
Sbjct: 332 LADGRLLDTYTAERRAHARSMIHLS 356

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|Q13QI0|MHPA_BURXL 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Burkholderia xenovorans (strain LB400) GN=mhpA PE=3 SV=1

 Score =  109 bits (272), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 59/387 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++  L   G++  VLEK +    +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANYLGLQGVRVVVLEKLEQIIDYPRAIGLDDEALRVFQSV-GLADVL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   + TG    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---THTGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHN--HLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +++ +        EGL    H+    ++L G      +     + + A   K G+   R 
Sbjct: 123 DRVLY--------EGLRRFPHV----QVLFGTSVSGFTQDPAGVTIEADDEKGGR---RT 167

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGML 278
           ++ + ++G DG  S VR+L+ +   G     + + V   +  +G      +   +RP   
Sbjct: 168 VRASYMVGADGGNSFVRRLLDVPFEGRTKPNQWIVVDVRNDPIGSPHIYMHCDPQRP--- 224

Query: 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDID 337
                   +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D
Sbjct: 225 -------YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPQKVD 271

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            I  + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA NL WK+A V+
Sbjct: 272 YIRKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDASNLGWKLAMVV 329

Query: 398 KDIAPASILNTYETERKPIAEFNTALS 424
           K +A  ++L+TY  ER+  A     LS
Sbjct: 330 KQLAGDALLDTYTAERRAHARSMIHLS 356

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|A4T8B6|MHPA_MYCGI 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Mycobacterium gilvum (strain PYR-GCK) GN=mhpA PE=3 SV=1

 Score =  105 bits (263), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 195/443 (44%), Gaps = 67/443 (15%)

Query: 38  VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRK 97
           ++ +  V V+IVGAGP GL L+ +L   G++  V+++      +P+   +++     F+ 
Sbjct: 1   MTEQTDVDVVIVGAGPAGLTLANILGLEGVRVLVVDERDKLIDYPRGVGLDDESLRTFQA 60

Query: 98  LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKL 157
           + GL + +     P  + R F    ++       +  M P D          A F   K 
Sbjct: 61  I-GLVDRVLPHTVPNQILRFFDAKRNL-------LAEMAPPD----------ARFGWPKR 102

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
           N  +   ++   F         GL        E+  GH         QC         E 
Sbjct: 103 NGFVQPMVDAELFG--------GLQR--FDNVEVRFGHRM------HQCTQTTDRVEVEF 146

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLG--DYLLNERP 275
              + ++    ++G DG  S  R+L+G+   G     + + V   +  LG  +  +   P
Sbjct: 147 DGGQASVSARYVVGCDGGRSVTRRLMGVSFDGTTSSTRWLVVDIANDPLGHPNSEVGADP 206

Query: 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
              +       + + +AH ++  EF++    +P + + E   P    +++ +L+ +    
Sbjct: 207 RRPY-------VSIAIAHGIRRFEFMI----HPDETDEEADDPAFVRRMLGQLIPYP-ER 254

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           +D+I  + +  H+ +A  F     +++LAGDA H  P   G G N+G++DA NL WK+A+
Sbjct: 255 VDMIRHRVYTHHSRIAGSFR--EGRLMLAGDAAHLMPVWQGQGYNSGIRDAANLGWKLAA 312

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALG--LDPTIANSVHQLIN 453
           V+   A   +L+TY+ ER+           ++ RA +++ + +G  + PT    V  L +
Sbjct: 313 VVTGRAGEELLDTYDVERR-----------KHARAMIDLSTMVGRVISPT-NRKVAALRD 360

Query: 454 RV--AGSVLPSVLQKALLEGIFK 474
           RV  A S +PS L++ +LE  FK
Sbjct: 361 RVIHAASAVPS-LKRYVLEMRFK 382

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Mycobacterium gilvum (strain PYR-GCK) (taxid: 350054)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	712
225425869	708	PREDICTED: 2,4-dichlorophenol 6-monooxyg	0.950	0.956	0.735	0.0
224100055	707	predicted protein [Populus trichocarpa]	0.973	0.980	0.729	0.0
449449080	709	PREDICTED: putative polyketide hydroxyla	0.946	0.950	0.698	0.0
255547866	685	conserved hypothetical protein [Ricinus	0.942	0.979	0.699	0.0
356538099	714	PREDICTED: putative polyketide hydroxyla	0.973	0.970	0.672	0.0
79351534	709	FAD/NAD(P)-binding oxidoreductase family	0.960	0.964	0.662	0.0
297808795	709	predicted protein [Arabidopsis lyrata su	0.977	0.981	0.651	0.0
297851148	709	EMB2421 [Arabidopsis lyrata subsp. lyrat	0.960	0.964	0.653	0.0
357463063	983	CCP [Medicago truncatula] gi|355490861|g	0.956	0.692	0.630	0.0
357126361	712	PREDICTED: putative polyketide hydroxyla	0.919	0.919	0.605	0.0

>gi|225425869|ref|XP_002266262.1| PREDICTED: 2,4-dichlorophenol 6-monooxygenase [Vitis vinifera] gi|297738359|emb|CBI27560.3| unnamed protein product [Vitis vinifera]

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/688 (73%), Positives = 584/688 (84%), Gaps = 11/688 (1%)

Query: 22  PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
           PY YTQ R  S+    VS   V PVLIVGAGPVGL LSILLTKLG+KC+VLEK+K FS H
Sbjct: 14  PYQYTQKRGFSE----VSRNGVFPVLIVGAGPVGLALSILLTKLGVKCAVLEKSKTFSKH 69

Query: 82  PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFE 141
           PQAHFINNR   VFRKLDGLA+EI++SQPPVDLWRKFIYCTS+ G +LGSVDHMQP+DF+
Sbjct: 70  PQAHFINNRSMEVFRKLDGLADEIQKSQPPVDLWRKFIYCTSLYGSVLGSVDHMQPEDFK 129

Query: 142 KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201
           +VVSP+SVAHFSQYKL  LLLKQLE L+F++   EG EGL++  ++ ++ILMGHECVS+ 
Sbjct: 130 QVVSPISVAHFSQYKLTALLLKQLENLSFRVHNWEGWEGLNHGHVREKQILMGHECVSMD 189

Query: 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF 261
           ATD  INV ASFLKEGKC +RNIQC+IL+G DGAGSTVRKL GI + GE+DLQKLVS+HF
Sbjct: 190 ATDDWINVTASFLKEGKCMKRNIQCSILVGADGAGSTVRKLAGITMKGEEDLQKLVSIHF 249

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
           LSK+LG YLLNERPGMLFFIFNTEAIGVLVAHDLK+GEF+LQ PFYPPQQ+L DFSPE+C
Sbjct: 250 LSKELGQYLLNERPGMLFFIFNTEAIGVLVAHDLKQGEFVLQTPFYPPQQSLHDFSPEVC 309

Query: 322 EKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNT 381
           EKLIFKLVG EL DIDVIDIKPWVMHAEVAEKF+ C N+I+LAGDA HRFPPAGGFGMNT
Sbjct: 310 EKLIFKLVGQELVDIDVIDIKPWVMHAEVAEKFVSCDNRILLAGDAAHRFPPAGGFGMNT 369

Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
           G+QDAHNLAWK+AS++K IAP+SIL+TY+TER+PIA FNT LS+QNFRAAM VP+ LGL+
Sbjct: 370 GIQDAHNLAWKLASLVKGIAPSSILHTYDTERRPIAIFNTELSIQNFRAAMAVPATLGLN 429

Query: 442 PTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRH 501
           PT+ANSVHQ+I    GS+LPS LQ+A+L+GIF +GRAQ+SESLLNE NP+GS RLAKLR 
Sbjct: 430 PTVANSVHQVITNGIGSILPSGLQRAVLDGIFTIGRAQVSESLLNEKNPIGSFRLAKLRR 489

Query: 502 IFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHM 561
           IFEEGKSLQLQFPAEDLGFRYLKGALVPDS+    A EAPTG RRD++P+  PGSRLPHM
Sbjct: 490 IFEEGKSLQLQFPAEDLGFRYLKGALVPDSDSAQDALEAPTGRRRDYIPTGAPGSRLPHM 549

Query: 562 NVRVLST----EIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVL 617
           NVR+LS     EI STLDLVSGD+VEFLLIIAPV+ESY LA AALKVAE+FKV  KVCV+
Sbjct: 550 NVRLLSNLTSEEICSTLDLVSGDEVEFLLIIAPVKESYQLAHAALKVAEEFKVSAKVCVM 609

Query: 618 WPAGTTNEVEFRSAAELAPWKNYIDV--EEVKRSSD-SLSWWRICKMTDMGAILVRPDDH 674
           WP+ T    E  SA  L PW++Y+DV   EVKRSS   LSWW +C+MTD GAILVRPD+H
Sbjct: 610 WPSNTDTGDEISSAGALMPWESYVDVVEVEVKRSSTVKLSWWDMCQMTDKGAILVRPDEH 669

Query: 675 IAWRSKSGVSGNPKLEMEMAFSAVLGIK 702
           IAWR K+G+ G+P LEM   FSA+L +K
Sbjct: 670 IAWRVKTGIVGDPILEMHRVFSAILCVK 697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100055|ref|XP_002311726.1| predicted protein [Populus trichocarpa] gi|222851546|gb|EEE89093.1| predicted protein [Populus trichocarpa]

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/707 (72%), Positives = 591/707 (83%), Gaps = 14/707 (1%)

Query: 3   IAAFTRGLNCFSRIKTFP----YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVL 58
           I  F+       RI+  P    Y Y + QCR  S  K    +++V+PVLIVGAGPVGLVL
Sbjct: 7   IKGFSSVYRAKPRIRVHPSFCQYGYCHIQCRTFSHFKD--HDDSVLPVLIVGAGPVGLVL 64

Query: 59  SILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118
           SILLTKLG+KCSVLEK+K+FS HPQAHFINNR   VFRKLDGLAEEI+RSQPPVDLWRKF
Sbjct: 65  SILLTKLGVKCSVLEKSKSFSHHPQAHFINNRSMEVFRKLDGLAEEIQRSQPPVDLWRKF 124

Query: 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178
           +YCTS+TGP+LGSVDHMQPQDFEKVVSPVSVAHFSQYKL +LLLK+LE LNF IC  EG 
Sbjct: 125 VYCTSLTGPVLGSVDHMQPQDFEKVVSPVSVAHFSQYKLIRLLLKKLEDLNFHICKPEG- 183

Query: 179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238
             L++   +G E+LMGHECV ++AT Q +NV AS LKEGK TERNI CNIL+GTDGAGST
Sbjct: 184 --LNDEPFRGGELLMGHECVKINATGQSVNVTASHLKEGKYTERNISCNILVGTDGAGST 241

Query: 239 VRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG 298
            RKL GI+L GEKDLQKLVSVHFLS+DLG YLLNERPGMLFFIFNTEAIGVLVAHDL +G
Sbjct: 242 TRKLAGIELRGEKDLQKLVSVHFLSRDLGQYLLNERPGMLFFIFNTEAIGVLVAHDLMQG 301

Query: 299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358
           EF+LQ+PFYPPQQ+L+DFSPE C+ LI KLVG ELSDIDVIDIKPWVMHAEVAEKF+ C 
Sbjct: 302 EFVLQMPFYPPQQSLDDFSPETCKHLILKLVGQELSDIDVIDIKPWVMHAEVAEKFVSCD 361

Query: 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           N+IILAGDA HRFPPAGGFGMNTG+QDAHNLAWKIA+++K IAP+SIL+TYETER+PIA 
Sbjct: 362 NRIILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIAALVKGIAPSSILHTYETERRPIAI 421

Query: 419 FNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRA 478
           FNTALSVQNFRAAM VP+ LGLDPT+ANSVHQ I    GS+LPS LQ+A+L+GIF +GRA
Sbjct: 422 FNTALSVQNFRAAMAVPATLGLDPTVANSVHQTITDGVGSILPSGLQRAILDGIFTIGRA 481

Query: 479 QLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAP 538
           QLSE LLNE N LGSSRLAKLR +FEEGKSLQLQFPAEDLGFRYL+GAL+PDS+  VGA 
Sbjct: 482 QLSEFLLNEKNLLGSSRLAKLRRLFEEGKSLQLQFPAEDLGFRYLEGALIPDSD-SVGAQ 540

Query: 539 EAPTGHRRDFVPSANPGSRLPHMNVRVLSTE----IISTLDLVSGDKVEFLLIIAPVEES 594
           E PTG RRD++PS++PGSRLPHMNVR+LS       ISTLDL+  DKVEFLL IAP+E+S
Sbjct: 541 EPPTGRRRDYIPSSDPGSRLPHMNVRMLSNSSSEACISTLDLLPLDKVEFLLFIAPLEKS 600

Query: 595 YHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLS 654
           YHLA AALKVAE+FKV  KVC+LWP  T    E RS   +APW+NYIDV E K SS+S S
Sbjct: 601 YHLAVAALKVAEEFKVSVKVCILWPTETVKGAEARSKTAMAPWENYIDVAEAKESSNSSS 660

Query: 655 WWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGI 701
           WW +C+MT+ GAILVRPD+HIAWR+KSG+  +P LEM+  FSA+L +
Sbjct: 661 WWSMCQMTEKGAILVRPDEHIAWRAKSGLDDDPILEMKSVFSAILKV 707

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449080|ref|XP_004142293.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus] gi|449513114|ref|XP_004164234.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus]

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/681 (69%), Positives = 573/681 (84%), Gaps = 7/681 (1%)

Query: 22  PYGYTQCRALSDSKTIVS-NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           P    QCR  S+SK     +E +VPVLIVGAGPVGLVL+ILLTKLG+KC+++EKNK+FS 
Sbjct: 32  PLRNIQCRGSSNSKIFHGGDETMVPVLIVGAGPVGLVLAILLTKLGVKCAIVEKNKSFSK 91

Query: 81  HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
           HPQAHFINNR   VFRKLDGLAE+I+  QPPV+ WRKFIYCTS+ G ILGSVDHMQPQDF
Sbjct: 92  HPQAHFINNRTMEVFRKLDGLAEKIQLYQPPVESWRKFIYCTSLNGTILGSVDHMQPQDF 151

Query: 141 EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200
           E ++SPVSVAHFSQYKLN LLLKQL+ L F++C+ +  EG    +++ ++IL+GHECVS+
Sbjct: 152 EHIISPVSVAHFSQYKLNGLLLKQLQNLGFQVCSPDSLEG--PCVVREKKILLGHECVSI 209

Query: 201 SATDQCINVIASFLKEGKCTER-NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259
            ATD+ +N+ AS+LKEGK  ER NI CNIL+G DGAGSTVR+LVGI++ GE DLQKLVS+
Sbjct: 210 DATDESVNMTASYLKEGKHVERRNISCNILVGADGAGSTVRRLVGIEMKGENDLQKLVSI 269

Query: 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
           HF S++LG+YLL +RPGML+FIFNTEAIGVLVAHDLK+GEFILQVPFYPPQQN+EDF P+
Sbjct: 270 HFFSRELGEYLLKDRPGMLYFIFNTEAIGVLVAHDLKQGEFILQVPFYPPQQNIEDFFPQ 329

Query: 320 ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
           +CE+LIFKLVG  L DIDV D+KPW+MHAEVAEKF+C  N ++LAGDA HRFPPAGGFGM
Sbjct: 330 MCEELIFKLVGRNLCDIDVRDVKPWIMHAEVAEKFICRQNHVLLAGDAAHRFPPAGGFGM 389

Query: 380 NTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALG 439
           NTG+QD HNLAWK+A+VL+DIA  SILNTYE ER+PIA FNTALSV+NF+AAMEVP+ALG
Sbjct: 390 NTGIQDVHNLAWKLAAVLQDIASPSILNTYEMERRPIALFNTALSVKNFKAAMEVPAALG 449

Query: 440 LDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKL 499
           LDP IANSVH+++N   GS+L S LQ A+L+GIFK+GR QLS++ LN  NP+GSSRLAKL
Sbjct: 450 LDPKIANSVHRVVNHGLGSILSSSLQSAVLDGIFKIGRLQLSDTFLNVENPIGSSRLAKL 509

Query: 500 RHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLP 559
           RHIF+EGKSLQLQFPAEDLGFRY +GA++ D+N  +G  E PTG RR ++PSA+PGSRLP
Sbjct: 510 RHIFDEGKSLQLQFPAEDLGFRYSEGAIIRDNNL-LGGREEPTGRRRQYLPSADPGSRLP 568

Query: 560 HMNVRVL-STEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLW 618
           HMNVRVL S EIISTLDLVSGDK+EFLLIIAP  ESY LA AALKVAE+FK   KVC+LW
Sbjct: 569 HMNVRVLASEEIISTLDLVSGDKIEFLLIIAPRSESYRLAHAALKVAEEFKTSVKVCILW 628

Query: 619 PAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR 678
            A TT ++E  S  +L PW+NYI+V+E+++S  S SWW +CKMTD GAILVRPD+HIAWR
Sbjct: 629 SANTT-KIESSSKDQLTPWENYIEVQEIRQSITSPSWWDVCKMTDKGAILVRPDEHIAWR 687

Query: 679 SKSGVSGNPKLEMEMAFSAVL 699
            KSG+SG+P  E+   F+ +L
Sbjct: 688 VKSGISGDPNTELIGVFTTLL 708

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547866|ref|XP_002514990.1| conserved hypothetical protein [Ricinus communis] gi|223546041|gb|EEF47544.1| conserved hypothetical protein [Ricinus communis]

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/692 (69%), Positives = 575/692 (83%), Gaps = 21/692 (3%)

Query: 15  RIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           R K   Y Y Y+Q R LS S+++ S+++++PVLIVGAGPVGL LSILLTKLG+KCS+LEK
Sbjct: 11  RNKLCSYGY-YSQSRGLSHSQSLNSDDSILPVLIVGAGPVGLTLSILLTKLGVKCSILEK 69

Query: 75  NKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDH 134
           +KAFS HPQAHFINNR   +F KL+GLAEEI+RSQPPV+LWRKFIYCTS+TGPILGSVDH
Sbjct: 70  SKAFSNHPQAHFINNRSMEIFHKLEGLAEEIQRSQPPVELWRKFIYCTSLTGPILGSVDH 129

Query: 135 MQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194
           MQPQDFEKVVSPVSVAHFSQYKL++LLL++LE LNF IC  E   GL +  L+GREILMG
Sbjct: 130 MQPQDFEKVVSPVSVAHFSQYKLSRLLLRKLEDLNFHICRPESVRGLGDGPLKGREILMG 189

Query: 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
           HEC+S++ATD  + V AS + EGK  E++I C+IL+GTDGAGST+RKL GI+L GEKDLQ
Sbjct: 190 HECISMNATDYSVTVTASHIVEGKYMEKDISCSILVGTDGAGSTIRKLAGIELRGEKDLQ 249

Query: 255 KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLE 314
           KL+S+HF S+DLG YLL ERPGMLFFIFNTEAIGVLVAHDLK+GEFILQ           
Sbjct: 250 KLISIHFFSRDLGHYLLAERPGMLFFIFNTEAIGVLVAHDLKQGEFILQ----------- 298

Query: 315 DFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPA 374
                IC KLI KLVG ELSDIDV ++KPWVMHAEVAEKF+ C +++ILAGDA HRFPPA
Sbjct: 299 -----ICRKLILKLVGQELSDIDVTEVKPWVMHAEVAEKFVSCNSRVILAGDAAHRFPPA 353

Query: 375 GGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEV 434
           GGFGMNTG+QD HNLAWK+AS +  IAP+SI++TYE ER+PIA FNTALSVQNFRAAM V
Sbjct: 354 GGFGMNTGIQDVHNLAWKLASFMMGIAPSSIIHTYEMERRPIALFNTALSVQNFRAAMAV 413

Query: 435 PSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSS 494
           P+ALGLDP++ANSVH+++N   GS+LPS LQ+A+L+GIF +GRAQLSESLLNE NPLGSS
Sbjct: 414 PAALGLDPSVANSVHEVMNDGVGSILPSGLQRAILDGIFMIGRAQLSESLLNERNPLGSS 473

Query: 495 RLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANP 554
           RL K+R IFEEGKSLQLQFPAEDLGFRYLKGALVPD++ + G  E PTG RRD++PSA+P
Sbjct: 474 RLDKVRRIFEEGKSLQLQFPAEDLGFRYLKGALVPDNDSKKGVLEPPTGRRRDYIPSADP 533

Query: 555 GSRLPHMNVRV---LSTEI-ISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKV 610
           GSR+PHM+VRV   LS+E+ ISTLDL+SGDK+EFLLI+AP+E+SY LARAALKVAE  KV
Sbjct: 534 GSRMPHMDVRVLSNLSSEVTISTLDLLSGDKIEFLLIVAPLEKSYQLARAALKVAEVLKV 593

Query: 611 PTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVR 670
             KVCV+WP+   +  E  S   LAPWKNYIDV EVK+S +  SWW +C+MTD GAILVR
Sbjct: 594 SAKVCVMWPSDYADISEASSKKALAPWKNYIDVLEVKKSPNLPSWWSMCQMTDKGAILVR 653

Query: 671 PDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIK 702
           PD+HIAWR KSG+  +P  EM   FSA++G+K
Sbjct: 654 PDEHIAWRVKSGLDNDPVSEMTRVFSAIMGVK 685

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538099|ref|XP_003537542.1| PREDICTED: putative polyketide hydroxylase-like [Glycine max]

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/712 (67%), Positives = 562/712 (78%), Gaps = 19/712 (2%)

Query: 9   GLNCFSRIKTFP---------YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLS 59
           G   F R  +FP         Y   + Q R  S    +  N+ V PVLI+GAGPVGLVLS
Sbjct: 2   GFLRFIRRYSFPFKDKTRNRAYALQHMQSRGFSKDGVLNGNDVVHPVLIIGAGPVGLVLS 61

Query: 60  ILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119
           ILLTKLGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKFI
Sbjct: 62  ILLTKLGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFI 121

Query: 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE 179
           YCTS++G ILGSVDH+QPQD E  VSPVSVAHFSQYKL  LLLK+LE L F+IC  E  E
Sbjct: 122 YCTSLSGSILGSVDHIQPQDLEHFVSPVSVAHFSQYKLTMLLLKRLENLGFQICAPESLE 181

Query: 180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
           G  N     ++I+MGHECVS+ A++  + V AS + +GK  E+NI CNILIGTDGAGSTV
Sbjct: 182 G--NEQSCEKKIMMGHECVSIDASNDFVTVTASSIIKGKRVEQNIHCNILIGTDGAGSTV 239

Query: 240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE 299
           RKLVGI++ GEKDLQKLVSVHF SKDLG +LL E PGMLFFIFN EAIGVLVAHDL++GE
Sbjct: 240 RKLVGIEMRGEKDLQKLVSVHFFSKDLGQFLLKENPGMLFFIFNAEAIGVLVAHDLRQGE 299

Query: 300 FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
           F+LQ+PFYPPQQ +EDF+P+ CEKLI KLVG E  D+DVIDIKPWVMHAEVAE+F+C  N
Sbjct: 300 FVLQIPFYPPQQTIEDFNPKACEKLISKLVGREFGDVDVIDIKPWVMHAEVAERFICSGN 359

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419
           +I+LAGDA HRFPPAGGFGMNTG+QDAHNLAWKIASV+K IAP S+LNTYE ERKPIA F
Sbjct: 360 RILLAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIASVIKGIAPTSMLNTYEIERKPIALF 419

Query: 420 NTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQ 479
           NT LS++N++AAM VP+ALGLDPT+AN VHQ I    GS+LPS LQK  L+GIF +GRAQ
Sbjct: 420 NTRLSLENYKAAMSVPAALGLDPTVANIVHQFIVDGIGSILPSGLQKVALDGIFGIGRAQ 479

Query: 480 LSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPE 539
           +SE +LNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYL+GAL+P+S      PE
Sbjct: 480 VSEFVLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLQGALMPESKDVESPPE 539

Query: 540 APTGHRRDFVPSANPGSRLPHMNVR------VLSTEIISTLDLVSGDKVEFLLIIAPVEE 593
             TG RRD+ PSA PGSRLPH+ VR      V   E +STLDLVSGDKVEF+LIIAPVEE
Sbjct: 540 VLTGRRRDYTPSAQPGSRLPHIFVRVNPLSEVCDAETVSTLDLVSGDKVEFILIIAPVEE 599

Query: 594 SYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSL 653
           SYHLAR A KVAE+ ++  KVC+ W   +   +E  S A L+PWKNY+DV EV  S+   
Sbjct: 600 SYHLAREAFKVAEEQEIFLKVCIFWSTDSVEGLEKGSKAALSPWKNYLDVVEVWSSTS-- 657

Query: 654 SWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVN 705
           +WW +C MT+ GAILVRPD+HIAWR+ SG++G+P++EM+  FSA+LG+   N
Sbjct: 658 NWWDMCNMTNRGAILVRPDEHIAWRTSSGLAGDPRVEMQRVFSAILGVHGSN 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79351534|ref|NP_173844.2| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|26450238|dbj|BAC42236.1| unknown protein [Arabidopsis thaliana] gi|332192397|gb|AEE30518.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/693 (66%), Positives = 564/693 (81%), Gaps = 9/693 (1%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++GL    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct: 196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct: 316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query: 433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLG 492
            VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQLSESLLNESNPLG
Sbjct: 436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESLLNESNPLG 495

Query: 493 SSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSA 552
           + RL++L+ IFE GKSLQLQFPAEDLGFRYL+GA+VPD+  E G PE P+G RRD+VP A
Sbjct: 496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFRYLEGAIVPDNESEAGDPEVPSGRRRDYVPCA 555

Query: 553 NPGSRLPHMNVRVLSTE----IISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDF 608
            PGSRLPHM V++LS      I+STLDLVS +KVEFLLII+P++ESY LA A  KVA++F
Sbjct: 556 EPGSRLPHMYVKILSDSTREVIVSTLDLVSTEKVEFLLIISPLQESYELAHATFKVAKEF 615

Query: 609 KVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSS-DSLSWWRICKMTDMGAI 667
               KVCV+WP+ + + +E +S + LAPW+NY+DV EVK+ + +  SWW ICKM++ G+I
Sbjct: 616 MASVKVCVVWPS-SDDGLERKSNSALAPWENYVDVMEVKKQNGEGTSWWSICKMSERGSI 674

Query: 668 LVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLG 700
           LVRPD HIAWR+KSG++ +P L M   F+ +LG
Sbjct: 675 LVRPDQHIAWRAKSGITLDPTLHMRDVFTIILG 707

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808795|ref|XP_002872281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318118|gb|EFH48540.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/705 (65%), Positives = 564/705 (80%), Gaps = 9/705 (1%)

Query: 2   RIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSI 60
           RI   TR     SR++  P  Y   Q + LS++ +    +A  +PVLIVGAGPVGLVLSI
Sbjct: 6   RITGVTRISRNNSRVRVCPVRY--FQSKDLSNTNSFNGEDAAKLPVLIVGAGPVGLVLSI 63

Query: 61  LLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120
           LLTKLG+KC+V++K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWRKFIY
Sbjct: 64  LLTKLGVKCAVVDKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRKFIY 123

Query: 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEG 180
           CTS++G  LG+VDHMQPQDFEKVVSP SVAHFSQYKL  LLLK+L  L F +  S+ ++G
Sbjct: 124 CTSLSGSTLGTVDHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLGDLGFHVRGSKESDG 183

Query: 181 LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240
           L    +  R+ILMGHECV++ A    I    S+LK GK  +RNIQC+IL+G DGAGS VR
Sbjct: 184 LEVDAVVARQILMGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSILVGADGAGSAVR 243

Query: 241 KLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEF 300
           KL  I++ GE+DLQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF
Sbjct: 244 KLTAIEMRGERDLQKLVSVHFMSRELGEYLISRRPGMLFFIFNTDGIGVLVAHDLLQGEF 303

Query: 301 ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
           +LQ+P+YPPQQ+L DFSPE+C  LI+ LVG ELSD+DV DIKPWVMHAEVAEKF+CC N+
Sbjct: 304 VLQIPYYPPQQSLSDFSPEMCRMLIYNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENR 363

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN 420
           +ILAGDA HRFPPAGGFGMNTG+QDAHNL WKIA++++  A +SIL TYETER+PIA  N
Sbjct: 364 VILAGDAAHRFPPAGGFGMNTGIQDAHNLTWKIAALVQGSAKSSILKTYETERRPIALSN 423

Query: 421 TALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQL 480
           T+LSVQNFRAAM VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQL
Sbjct: 424 TSLSVQNFRAAMSVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQL 483

Query: 481 SESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEA 540
           SESLLNESNPLG+ RL +++ IFE GKSLQLQFPAEDLGFRYL+GA+VPD+  E G PE 
Sbjct: 484 SESLLNESNPLGNQRLRRVKSIFERGKSLQLQFPAEDLGFRYLEGAIVPDNESEAGDPEL 543

Query: 541 PTGHRRDFVPSANPGSRLPHMNVRVLSTE----IISTLDLVSGDKVEFLLIIAPVEESYH 596
           P+G RRD+VP A PGSRLPHM V++LS      I+STLDLVS +KVEFLLII+P++ESY 
Sbjct: 544 PSGRRRDYVPCAEPGSRLPHMYVKILSDSTREVIVSTLDLVSTEKVEFLLIISPLQESYE 603

Query: 597 LARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEV-KRSSDSLSW 655
           LARA  KVA++F    KVCV+WP+ +   +E  S + LAPW+NY+DV EV +++ +   W
Sbjct: 604 LARATFKVAKEFMANVKVCVVWPS-SDEGLERESNSALAPWENYVDVMEVIRQNGEGTCW 662

Query: 656 WRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLG 700
           W ICKM++ G+ILVRPD HIAWR+KSG++ +P L M  AFS +LG
Sbjct: 663 WSICKMSERGSILVRPDQHIAWRAKSGITLDPTLHMREAFSIILG 707

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851148|ref|XP_002893455.1| EMB2421 [Arabidopsis lyrata subsp. lyrata] gi|297339297|gb|EFH69714.1| EMB2421 [Arabidopsis lyrata subsp. lyrata]

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/693 (65%), Positives = 560/693 (80%), Gaps = 9/693 (1%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  + Q + LS + +    +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRHFQSKDLSSTNSFNGQDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWR FIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRNFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++G+    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKDSDGIELDSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV++ A    I    S+LK GK  +RNIQC++L+G DGAGS VRKL  I++ GEKD
Sbjct: 196 MGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSLLVGADGAGSAVRKLTEIEMRGEKD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISSRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFS E+C+ LIF LVG +LSD+DV DIKPWVMHAEVAEKF+C  N++ILAGDA HRFP
Sbjct: 316 LSDFSLEMCKMLIFNLVGHQLSDLDVADIKPWVMHAEVAEKFMCFENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SILNTYETER+PIA  NT+LSVQNF+AAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSAKSSILNTYETERRPIALSNTSLSVQNFKAAM 435

Query: 433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLG 492
            VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQLSES+LNESNPLG
Sbjct: 436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESILNESNPLG 495

Query: 493 SSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSA 552
           + RL++L+ IFE GKSLQLQFPAEDLGFRYL+GA+VPDS  E G PE P+G RRD+VP A
Sbjct: 496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFRYLEGAIVPDSKSEAGDPEVPSGRRRDYVPCA 555

Query: 553 NPGSRLPHMNVRVLSTE----IISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDF 608
            PGSRLPHM +++LS      I+STLDLVS +KVEFLLII+P++ESY LARA  KV ++ 
Sbjct: 556 EPGSRLPHMYMKILSDSKRDVIVSTLDLVSTEKVEFLLIISPLQESYELARATFKVGKEL 615

Query: 609 KVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSS-DSLSWWRICKMTDMGAI 667
               KVCV+WP+ +   +E  S + +APW+NY+DV EVKR + +  SWW ICKM+D G+I
Sbjct: 616 MANVKVCVVWPS-SDEGLERESNSAVAPWENYVDVMEVKRQNGEGTSWWSICKMSDRGSI 674

Query: 668 LVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLG 700
           LVRPD HIAWR+KSG++ +P L M   FS +LG
Sbjct: 675 LVRPDQHIAWRAKSGITLDPTLHMRDVFSIILG 707

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463063|ref|XP_003601813.1| CCP [Medicago truncatula] gi|355490861|gb|AES72064.1| CCP [Medicago truncatula]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/744 (63%), Positives = 559/744 (75%), Gaps = 63/744 (8%)

Query: 16  IKTFPYPYG-----------YTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK 64
           I+ + YP+            + Q R  S +K I  N+AV+PVLI+GAGPVGLVLSILLTK
Sbjct: 242 IRRYNYPFKDKTRNRALLIQHMQSRGFSKAKVINGNDAVLPVLIIGAGPVGLVLSILLTK 301

Query: 65  LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124
           LGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKF+YCTS+
Sbjct: 302 LGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFVYCTSL 361

Query: 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNH 184
           +G ILGSVDH+QPQD E VVSP+SVAHFSQYKL  LLLKQLE L F+ C SE +EG  N 
Sbjct: 362 SGSILGSVDHIQPQDLEHVVSPISVAHFSQYKLTMLLLKQLENLGFQTCASESSEG--NK 419

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
                 ILMGHECVS+   +  + V AS +  GK  E++I C+ILIG DGAGSTVRKLVG
Sbjct: 420 QPCENIILMGHECVSIDTNNDLVTVTASSVNNGKRVEKDIHCSILIGADGAGSTVRKLVG 479

Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQV 304
           ID+ GEKDLQKLVSVHFLSK LG +LL E PGMLFFIFN+EAIGVLVAHDL++GEF+LQ+
Sbjct: 480 IDMRGEKDLQKLVSVHFLSKRLGKFLLKENPGMLFFIFNSEAIGVLVAHDLRQGEFVLQI 539

Query: 305 PFYPPQQNLEDFSP------------------EICEKLIFKLVGWELSDIDVIDIKPWVM 346
           PFYPPQQ +EDFSP                  + CEKLI KLVG E  D+DVIDIKPW+M
Sbjct: 540 PFYPPQQTIEDFSPKACEKLISKFVGQEFGDVDACEKLISKLVGQEFGDVDVIDIKPWIM 599

Query: 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASIL 406
           HAEVAE+F+CC N+I+LAGDA HRFPPAGGFGMNTG+QDAHNL WKIASV+K IAP S+L
Sbjct: 600 HAEVAERFICCGNRILLAGDAAHRFPPAGGFGMNTGIQDAHNLVWKIASVIKGIAPNSML 659

Query: 407 NTYETERKP----------------------------IAEFNTALSVQNFRAAMEVPSAL 438
           NTY+ ER+P                            I+ FNT LS++N+RAAM VP+ L
Sbjct: 660 NTYDMERRPVMLLSSIALFKFIFIFKYDKPIDVYCCQISVFNTRLSLENYRAAMSVPATL 719

Query: 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAK 498
           GLDPT+AN+VH++I    GS+LPS LQ+  L+ IF +GR QLSES+LNESNPLGSSRLAK
Sbjct: 720 GLDPTVANTVHKVIINGVGSILPSGLQRLALDSIFAIGRVQLSESVLNESNPLGSSRLAK 779

Query: 499 LRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRL 558
           LRHIFEEGKSLQLQFPAEDLGFRYL+GA+VP+S+     P+ PTG RRD++PSA PG RL
Sbjct: 780 LRHIFEEGKSLQLQFPAEDLGFRYLQGAIVPESSDVESPPQVPTGRRRDYIPSAQPGCRL 839

Query: 559 PHMNVRV--LSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCV 616
           PHM VR+  LS E +ST DLVSGDK+EF+LIIAPV+ESYHLAR A KVAE+ +V  KVCV
Sbjct: 840 PHMFVRINALSEETVSTHDLVSGDKIEFVLIIAPVKESYHLAREAFKVAEERQVSLKVCV 899

Query: 617 LWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIA 676
            W   +   ++  S   L+PWKNY DV EV   S + +WW +C MT+ GAILVRPD+HIA
Sbjct: 900 FWSTDSVEGLDNGSKDALSPWKNYADVVEV--CSTTSNWWDMCNMTNKGAILVRPDEHIA 957

Query: 677 WRSKSGVSGNPKLEMEMAFSAVLG 700
           WR+ S ++G+P+ EME  FSA+LG
Sbjct: 958 WRAISRLAGDPRAEMEKVFSAILG 981

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126361|ref|XP_003564856.1| PREDICTED: putative polyketide hydroxylase-like [Brachypodium distachyon]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/664 (60%), Positives = 508/664 (76%), Gaps = 9/664 (1%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +PV+IVGAGPVGLVLS LLTK GIKC+V+EK+  F+ HP+AHFINNR   +FRK DGLA 
Sbjct: 43  LPVVIVGAGPVGLVLSFLLTKFGIKCTVIEKSMEFTRHPRAHFINNRTMEIFRKFDGLAG 102

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
           +IE++QPPVDLWRKF+YCTS++G +LGSVDHM+ +DF+KV+SP+SVAHFSQYKL  LLL 
Sbjct: 103 DIEKAQPPVDLWRKFVYCTSLSGSVLGSVDHMKQEDFDKVISPISVAHFSQYKLVDLLLN 162

Query: 164 QLEKLNFKICTSEGTEG-LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +LE + F  C  +   G L   L+   +ILMGHEC S+  TD+ I + ASF   G   ER
Sbjct: 163 KLEGIGFHTCFPDDIGGRLTRDLVLENKILMGHECSSIQLTDEGILLGASFNNGGTMQER 222

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            + C +L+  DGA STVR+L GI + G +DLQKLVSVHFLS++LG YL +ERPGMLFFIF
Sbjct: 223 KLHCGLLLAADGAKSTVRELAGISMEGARDLQKLVSVHFLSRNLGKYLSSERPGMLFFIF 282

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK 342
           N +AIGVLVAHDL+ GEF+LQ+PFYPPQQ  +DFS ++CE++I KLVGWE +D+ V+DIK
Sbjct: 283 NPDAIGVLVAHDLEHGEFVLQIPFYPPQQMFDDFSIKVCEQIIVKLVGWEPADVQVLDIK 342

Query: 343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP 402
           PWVMHAEVAEK+  C N++IL GDA HRFPPAGGFGMNTGVQDAHNLAWK+  +L  +A 
Sbjct: 343 PWVMHAEVAEKYTGCNNRVILVGDAAHRFPPAGGFGMNTGVQDAHNLAWKLGLLLNGVAG 402

Query: 403 ASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPS 462
            SIL TYE+ERKP+A  NT LSVQNF+AAM VP+ LGLDPT+ANSVHQ+IN   GSV+P 
Sbjct: 403 PSILQTYESERKPVAISNTKLSVQNFKAAMSVPATLGLDPTVANSVHQVINSSLGSVIPR 462

Query: 463 VLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRY 522
            LQK +LEG+F +GRAQ+S+ +LNE NP+GS RLA+LR I +EGKSLQLQFPAEDLGFRY
Sbjct: 463 NLQKTVLEGLFSIGRAQVSDYILNEKNPIGSLRLARLRSILDEGKSLQLQFPAEDLGFRY 522

Query: 523 LKGALVPDSNCEVGAPEAPTGH----RRDFVPSANPGSRLPHMNVRVLSTE---IISTLD 575
            KGALV +   E         H      +++PSA  GSRLPHM V+ LS+    ++ST+D
Sbjct: 523 EKGALVAEDCAETAQQAEKLKHINRSSGEYIPSAKVGSRLPHMLVKTLSSSSEGVLSTMD 582

Query: 576 LVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELA 635
           LVSGDKV+F+LI+AP+++SY LA A LK+AE+  +  KVCV+WP G+ +     S +ELA
Sbjct: 583 LVSGDKVQFVLIVAPLKKSYELACAMLKIAEELTLSAKVCVMWPQGSVDAKVRGSRSELA 642

Query: 636 PWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAF 695
           PW NY+DVEE+ R+SD+ SWW  C+++    ILVRPD+HIAW  +S +  +   E+   F
Sbjct: 643 PWTNYVDVEEIPRASDN-SWWETCQVSKNKVILVRPDEHIAWIKESDMVRDADSEVRRVF 701

Query: 696 SAVL 699
           S +L
Sbjct: 702 SQIL 705

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	712
TAIR|locus:2032482	709	EMB2421 "AT1G24340" [Arabidops	0.960	0.964	0.629	3.3e-237
TIGR_CMR|BA_3564	539	BA_3564 "FAD-binding monooxyge	0.525	0.693	0.293	1.8e-48
UNIPROTKB|P27138	598	tfdB "2,4-dichlorophenol 6-mon	0.321	0.382	0.302	1.6e-31
ASPGD|ASPL0000033058	624	apdD [Emericella nidulans (tax	0.353	0.403	0.290	1.1e-29
ASPGD|ASPL0000047100	579	AN9029 [Emericella nidulans (t	0.334	0.411	0.308	2.8e-29
ASPGD|ASPL0000070587	619	AN5044 [Emericella nidulans (t	0.301	0.347	0.328	3e-28
UNIPROTKB|G4NAW2	614	MGG_03126 "2,4-dichlorophenol	0.345	0.400	0.279	1.8e-22
UNIPROTKB|G4NIA7	588	MGG_10709 "Phenol 2-monooxygen	0.199	0.241	0.348	3.3e-19
ASPGD|ASPL0000073547	566	AN10582 [Emericella nidulans (	0.328	0.413	0.295	2.7e-17
DICTYBASE|DDB_G0287695	678	DDB_G0287695 "FAD-binding mono	0.330	0.346	0.259	3e-16

TAIR|locus:2032482 EMB2421 "AT1G24340" [Arabidopsis thaliana (taxid:3702)]

 Score = 2287 (810.1 bits), Expect = 3.3e-237, P = 3.3e-237
 Identities = 436/693 (62%), Positives = 539/693 (77%)

Query:    14 SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
             SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct:    18 SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query:    73 EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
             +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct:    76 DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query:   133 DHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREIL 192
             DHMQPQDFEKVVSP SVAHFSQY                +  S+ ++GL    +  R+IL
Sbjct:   136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query:   193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
             MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct:   196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query:   253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
             LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct:   256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query:   313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
             L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct:   316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query:   373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
             PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct:   376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query:   433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQXXXXXXXXXXXXX 492
              VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQ             
Sbjct:   436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESLLNESNPLG 495

Query:   493 XXRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSA 552
               RL++L+ IFE GKSLQLQFPAEDLGFRYL+GA+VPD+  E G PE P+G RRD+VP A
Sbjct:   496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFRYLEGAIVPDNESEAGDPEVPSGRRRDYVPCA 555

Query:   553 NPGSRLPHMNVRVLSTE----IISTLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDF 608
              PGSRLPHM V++LS      I+STLDLVS +KVEFLLII+P++ESY LA A  KVA++F
Sbjct:   556 EPGSRLPHMYVKILSDSTREVIVSTLDLVSTEKVEFLLIISPLQESYELAHATFKVAKEF 615

Query:   609 KVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSS-DSLSWWRICKMTDMGAI 667
                 KVCV+WP+ + + +E +S + LAPW+NY+DV EVK+ + +  SWW ICKM++ G+I
Sbjct:   616 MASVKVCVVWPS-SDDGLERKSNSALAPWENYVDVMEVKKQNGEGTSWWSICKMSERGSI 674

Query:   668 LVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLG 700
             LVRPD HIAWR+KSG++ +P L M   F+ +LG
Sbjct:   675 LVRPDQHIAWRAKSGITLDPTLHMRDVFTIILG 707

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_3564 BA_3564 "FAD-binding monooxygenase, PheA/TfdB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 397 (144.8 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
 Identities = 116/395 (29%), Positives = 186/395 (47%)

Query:    39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
             SN+  VPVLIVG G  GL  ++ L K  I+  ++E++ + + HP+A  I  R   +FR+L
Sbjct:     3 SND--VPVLIVGGGLSGLASALFLAKHNIEYLLIERHPSTAIHPKAGGITFRTMELFREL 60

Query:    99 DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXX 158
              GL + I  +   ++  R  I   ++       +  M+   +E   +   +    +    
Sbjct:    61 -GLEQRIRSAGKTLENCRGRIAVHTIAEANQEELAQMRANQYE---NDEKLLQKIEEISP 116

Query:   159 XXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
                          I   E         + G E+   HE VS    +Q   VIA+      
Sbjct:   117 SKQTACYQITLEEIMLQEAR-------ILGGELSFYHELVSYEQNEQ--GVIATIRNRET 167

Query:   219 CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278
               E  I C+ +I  DGA S +R+ +GI   G   +       +   D+ +++  +  G  
Sbjct:   168 EKESVIHCDYVIAADGAKSKIREQLGISAEGRGTIGGYYMNIYFEADVSEFMQGDAFGFS 227

Query:   279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDID 337
               + + E +G L+  D     +I  V + P + +  EDF+ E C+++I   +G    + +
Sbjct:   228 M-VLHPEVLGALIPVD-NARRWIYHVSYDPLKGERPEDFTIERCKQIIQTAIGSTNVEPE 285

Query:   338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
             ++ + PW      A KF    N+I L GD+ H  PP GGFG NTG+QDAHNLAWK+A+V+
Sbjct:   286 IVSVLPWKAAESTATKFQD--NRIFLVGDSAHIMPPTGGFGSNTGIQDAHNLAWKLAAVI 343

Query:   398 KDIAPASILNTYETERKPIAEFNTALSVQN-FRAA 431
             K  A   +L TY  ER P+A+  T  ++   FRAA
Sbjct:   344 KGKAKPKLLETYHEERYPVAKLTTDYAISLLFRAA 378

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|P27138 tfdB "2,4-dichlorophenol 6-monooxygenase" [Ralstonia eutropha JMP134 (taxid:264198)]

 Score = 259 (96.2 bits), Expect = 1.6e-31, Sum P(4) = 1.6e-31
 Identities = 73/241 (30%), Positives = 120/241 (49%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  ++   LIG DGA S V  +  +DL  E  + K  S++ L + DL  Y+ + RP +L+
Sbjct:   166 EFTVRSKYLIGADGANSRV--VSDLDLPLEGTMGKSGSINLLFEADLDRYVAH-RPSVLY 222

Query:   280 FIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
             ++    +    +G+ V   ++     L +  Y  +Q   + S     +++  L+G +   
Sbjct:   223 WVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDSVP 282

Query:   336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKIA 
Sbjct:   283 LKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKIAM 340

Query:   396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRV 455
             VL   A  S+L+TY  ER PIA+     + ++      +  ALGL P  A S  ++ + +
Sbjct:   341 VLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGL-PQ-AKSADEMKSNM 398

Query:   456 A 456
             A
Sbjct:   399 A 399

GO:0018666 "2,4-dichlorophenol 6-monooxygenase activity" evidence=NAS

GO:0046300 "2,4-dichlorophenoxyacetic acid catabolic process" evidence=NAS

ASPGD|ASPL0000033058 apdD [Emericella nidulans (taxid:162425)]

 Score = 251 (93.4 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
 Identities = 79/272 (29%), Positives = 131/272 (48%)

Query:   180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
             G+ N L+  R    G +       D  + V A     G+  +  +  + +IG DGA S +
Sbjct:   173 GMENPLIDFRA---GWKVKGARELDHGVEVEAIHSDTGEVWK--VSADFVIGCDGAHSAI 227

Query:   240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAI-------GVLVA 292
             RK + I L G       V VHF S+DL      ++ G  + +F   A        G ++A
Sbjct:   228 RKSLEIPLDGGPIHGYAVLVHFKSRDLSRI---QKQGQFWHLFFPNAASDGGSIKGAVIA 284

Query:   293 HDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-DIDVIDIKP-WVMHAEV 350
              D +   + +     P   + +  S EI   L+  + G      ID + ++  W     +
Sbjct:   285 QD-EVDTWTVHRFMRPDVDHTQLSSEEIVYDLLGGMGGQPFPIRIDEVLVRSTWTPSVAL 343

Query:   351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTY 409
             A  +    ++I +AGDACH+  P GG+GMNTG+ D +++ WK+A+V++  A PA++L+ Y
Sbjct:   344 ARSYAGPKHRIFIAGDACHQTVPTGGYGMNTGIADGYDIGWKLAAVIQGWAGPATLLS-Y 402

Query:   410 ETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
             E ER+P+ E     S  +    M++ + LGLD
Sbjct:   403 EKERRPVGELALQWSKVHMGNLMKMSAELGLD 434

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000047100 AN9029 [Emericella nidulans (taxid:162425)]

 Score = 271 (100.5 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
 Identities = 78/253 (30%), Positives = 129/253 (50%)

Query:   196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK 255
             E VSV+  +  ++ I    +E + T   ++ N L+G DGA S V   +GI + G + +  
Sbjct:   139 EFVSVTQDESGVSTILRD-RESEKTYM-VRSNYLLGCDGARSAVVSALGIPITG-RQINT 195

Query:   256 LVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKE----GEFILQVPFYPPQQ 311
               +VH +  DL  Y+ + RPG L +I N EA       + +      E++  V  +P  +
Sbjct:   196 AFNVH-IQADLTKYIAH-RPGSLNWILNPEAPDWSAVGNFRMVRPWHEWV--VSMHPASK 251

Query:   312 NLEDFSPEICE--KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACH 369
             N + F+P   +  K + +++G     I V+    W ++ +VA+ +    ++I+  GDA H
Sbjct:   252 NGKRFTPTEADIIKRLHQMIGDTSIPIKVLSTFEWTINDQVADYWQ--RDRILCIGDAVH 309

Query:   370 RFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
             R PP  G G NT + DA N+AWK+A V+K IA  ++L T   ERKP+ +     +     
Sbjct:   310 RHPPINGLGSNTCLSDAFNIAWKLAYVIKGIAKPALLETLSVERKPVGDGIVRRANTGME 369

Query:   430 AAMEVPSALGLDP 442
             A   + S +GL P
Sbjct:   370 AHRNLWSIIGLTP 382

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000070587 AN5044 [Emericella nidulans (taxid:162425)]

 Score = 241 (89.9 bits), Expect = 3.0e-28, Sum P(4) = 3.0e-28
 Identities = 75/228 (32%), Positives = 118/228 (51%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  I+   L G DGA S + K +G+ L   K  Q L +++ L K DL  +L+  R G L 
Sbjct:   214 EYQIRTRYLFGADGARSQIVKQLGLPLT-VKPGQGL-AINVLVKADLS-HLVAHRKGNLH 270

Query:   280 FIFNTE----AIG-VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL--IFKLVGWE 332
             ++   +    + G + +   +K  +  + + F     +    SP   E L  + +L+G E
Sbjct:   271 WVMQPDRDHPSFGWMAIIRMVKPWDEWMFILFPTRGYDPASVSPSKEEYLHRVRELIGDE 330

Query:   333 LSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWK 392
              +  ++++I  W ++  VAE +    N +   GDA HR PP  G G NT +QDA NLAWK
Sbjct:   331 -TPAEILNISKWYINEIVAETY-SDGNNVFCLGDAVHRHPPLNGLGSNTCIQDAFNLAWK 388

Query:   393 IASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             IA V + IA A +L+TY  ER+P+       + Q FR   ++ +ALG+
Sbjct:   389 IAYVHRGIAGAPLLSTYSAERQPVGHGIVTRANQAFRDHHQIWAALGM 436

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

UNIPROTKB|G4NAW2 MGG_03126 "2,4-dichlorophenol 6-monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 203 (76.5 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
 Identities = 76/272 (27%), Positives = 124/272 (45%)

Query:   186 LQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN--IQCNILIGTDGAGSTVRKLV 243
             L G +I    E  S    D  I V        K T  N  I+   L G DGA S +   +
Sbjct:   148 LNGFQIRWDTEYQSFEERDDGITVTVL----DKVTGLNYAIEAKYLFGADGARSRIVSQL 203

Query:   244 GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGV-----LVAHDLK-- 296
              + L         ++V  +  DL  +L+  R G L ++   +   +      V   +K  
Sbjct:   204 ELPLTRTPGGGLAINVQ-IKADLS-HLMKYRTGNLHWVMQPDREHIDFCFFAVVRMVKPW 261

Query:   297 -EGEFILQVPFYPPQQNLEDFSP--EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEK 353
              E  FIL    +P +    D  P  E  +K + +L+G + +  +++ +  W ++  VA+ 
Sbjct:   262 TEWMFIL----FPVKGYTMDPRPTTEQYQKAVRQLIGDD-TPFEIMRVNTWTVNETVADD 316

Query:   354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETER 413
             +     +++  GDA HR PP  G G NT +QDA NLAWK+A V++  A   +L TY  ER
Sbjct:   317 YQ--RGRVMCLGDAVHRHPPFNGLGSNTCIQDAFNLAWKVAYVMQGKAGPELLKTYTPER 374

Query:   414 KPIAEFNTALSVQNFRAAMEVPSALG-LDPTI 444
             +P+ +     +   FR    + +A+G + PT+
Sbjct:   375 QPVGKGIVKRANDGFRDHNHIFNAIGHILPTL 406

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4NIA7 MGG_10709 "Phenol 2-monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 215 (80.7 bits), Expect = 3.3e-19, Sum P(4) = 3.3e-19
 Identities = 55/158 (34%), Positives = 80/158 (50%)

Query:   309 PQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ-------- 360
             P Q L   SP + E L    +G    DI+V+ + PW++   VA  F C   +        
Sbjct:   241 PFQGLTPTSPRLLEFLRLS-IGDPDVDIEVLKVDPWMIRESVALSFGCGSKKQDDDGDEG 299

Query:   361 ------IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERK 414
                   I + GDA HR PP+ G G NTG+QDA+NL WK A V + +A AS+LN+Y  ER+
Sbjct:   300 KDDGHDIFILGDAAHRHPPSYGMGSNTGIQDAYNLGWKAAFVARGLAGASLLNSYSAERQ 359

Query:   415 PIAEFNTALSVQNFRAAMEVPSALGL-DPTIANSVHQL 451
             P+      +S +   +   V   LG+  PT  + + Q+
Sbjct:   360 PVGADLVRISNEGMVSHFAVWEQLGMMAPTAEDGLRQV 397

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000073547 AN10582 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
 Identities = 77/261 (29%), Positives = 112/261 (42%)

Query:   181 LHNHLLQ-GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
             L N L   G  +  G E +  +  D  I             E   +   ++G DG  STV
Sbjct:   169 LENRLASFGVHVERGLEFIGFTENDSSITARLKSTDHENDIE-TCEAAFIVGCDGPHSTV 227

Query:   240 RKLVGIDLVGEKDLQK--LVSVHFLSKDL-GD--YLLNERPGMLFFIFNTE-AIGVLVAH 293
             R   GID  G        +  +        G+     NE   ML F ++ +    +  A 
Sbjct:   228 RHAAGIDYDGATYSHTFFVADIEGAGPTFNGEAHVSFNESEFMLLFPYDDDHRARISGAI 287

Query:   294 DLKEGEFI-LQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVA 351
             D +  E     + F       ED +P+I  K  FK+       ID ++    +  H  VA
Sbjct:   288 DDETAERKGTDISF-------EDIAPQI--KRSFKM------QIDKMNWFSTYRSHHRVA 332

Query:   352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET 411
               F     ++ L GDA H   P GG GMNTG+ DA NLAWK+++V+K  A  S+L +YET
Sbjct:   333 ASF--AKGRVFLVGDAAHIHSPVGGQGMNTGIGDAINLAWKLSAVVKKQAGLSLLQSYET 390

Query:   412 ERKPIAEFNTALSVQNFRAAM 432
             ER+  A    + + + F AA+
Sbjct:   391 ERRAFALQLVSTTDKGFNAAI 411

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

DICTYBASE|DDB_G0287695 DDB_G0287695 "FAD-binding monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 68/262 (25%), Positives = 123/262 (46%)

Query:   223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFI 281
             N++  I+IG DG  S +RK +   + G    Q+ + V   + KD         P    FI
Sbjct:   194 NLKSKIIIGADGGNSFIRKSIASKMEGSSSKQRWLVVDAKIDKDHPPL-----PHYFQFI 248

Query:   282 FNTE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI 339
              N    A+ + +  +    EF++       +++ E   PEI   L+ +  G ++S +++I
Sbjct:   249 CNPSRPALTLPIPPNHYRWEFLIN----ENEKSEEMEKPEILNPLL-QSHGADISKLEII 303

Query:   340 DIKPWVMHAEVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
                 +V    +A+ +   YN    +L GDACH  PP  G G+++G +D  N+AWKI   L
Sbjct:   304 RKACYVFQNRIADNW---YNGDTTLLIGDACHLVPPFLGMGISSGFRDVQNIAWKIELFL 360

Query:   398 KDIAP--ASILNTYETERKPIAEFNTALSVQNFRAAM---EVPSALG--LDPTIAN--SV 448
             K +     ++ ++Y+ ER+P  E  T  +       M      + L   L  T+ +  S+
Sbjct:   361 KGVISNHQTLFSSYQIERQPNIENITEKATHAGEMIMITNRYKAFLRNLLLSTLLSFPSI 420

Query:   449 HQLINRVAGSVLPSVLQKALLE 470
              +L +  AG   P++++  L++
Sbjct:   421 EKLFHNKAGMKPPNIIKHGLID 442

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13.n3	LOW CONFIDENCE prediction!
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	712
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	1e-72
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	5e-71
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	7e-35
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-31
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-30
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	4e-28
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	2e-17
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	9e-17
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	5e-16
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	5e-15
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	1e-07
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	9e-07
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	8e-06
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	4e-05
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	9e-05
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	1e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	1e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	2e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	2e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	5e-04
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	6e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.001
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	0.002
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.002
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	0.002
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.003
TIGR02360	390	TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-mon	0.003

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score =  245 bits (627), Expect = 1e-72
 Identities = 173/636 (27%), Positives = 254/636 (39%), Gaps = 117/636 (18%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           PVLIVG GPVGL L++ L + G+   ++E+    + +P+A+  + R    FR+L G+A+E
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADE 67

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           +  +  PVD      Y T +TG  L        ++    V     +  S    +++  K 
Sbjct: 68  VRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKY 127

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
           LE +  +   ++    L            GH           +      L  G      I
Sbjct: 128 LEPILLEHAAAQPGVTLRY----------GHRLTDFEQDADGVTATVEDLDGG--ESLTI 175

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNT 284
           + + L+G DGA S VR+ +GI   G   LQ+ +S++  +  L   L+   P  ++++FN 
Sbjct: 176 RADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAA-LVGHDPAWMYWLFNP 234

Query: 285 EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPW 344
           +  GVLVA D ++     Q+     +  ++D         + + VG ++ D +V+ + PW
Sbjct: 235 DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARA---FVRRGVGEDI-DYEVLSVVPW 290

Query: 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPAS 404
                VA+ +     ++ LAGDA H F P GG+GMNTG+ DA NLAWK+A+VL   A  +
Sbjct: 291 TGRRLVADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPA 348

Query: 405 ILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVL 464
           +L++YE ER+PIA        +N   A     ALG  P          +  AG       
Sbjct: 349 LLDSYEAERRPIA-------ARNTDYARRNADALGSFPVPPEI---EDDGPAGDAARR-- 396

Query: 465 QKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLK 524
                    KVG A LSE    E N  G +                       LG+RY  
Sbjct: 397 ---------KVGDA-LSEHARQEFNSPGIT-----------------------LGYRYDG 423

Query: 525 GAL-VPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVE 583
             + VPD     G P  P      +VPSA PG R PH       ++  S  DL       
Sbjct: 424 SPIIVPD-----GTPPPPDD-PGVYVPSACPGGRAPH----AWLSDGRSLYDLFGPGFT- 472

Query: 584 FLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDV 643
            LL                  A    VP  V  L             AA L     Y   
Sbjct: 473 -LLRFGDAAV---DVAPLEAAAAALGVPLAVVDLPG---------PEAAAL-----Y--- 511

Query: 644 EEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRS 679
            E                     +LVRPD H+AWR 
Sbjct: 512 -EAD------------------LVLVRPDQHVAWRG 528

Length = 545

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score =  234 bits (600), Expect = 5e-71
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 41/379 (10%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             VLIVG GP GL+L++LL + G++  ++E++   S  P+A  +N R   + R+  GL +
Sbjct: 2   TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQA-GLED 60

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
            I     P +      Y TS               DF    SP  V  + Q +L  +L +
Sbjct: 61  RILAEGAPHEGMGLAFYNTS---------RRRADLDFL--TSPPRVTVYPQTELEPILRE 109

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
             E                     G ++  G E +S+      +  +    ++G   E  
Sbjct: 110 HAEAR-------------------GAQVRFGTEVLSLEQDGDGVTAVVRDRRDG--EEYT 148

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
           ++   L+G DG  S VRK +GI+  G E      + V F + DL D +  ER  + + I 
Sbjct: 149 VRAKYLVGCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPV--ERAFVHYLIG 206

Query: 283 NTEAIGVLV--AHDLKEGEFILQVPFYPPQQN-LEDFSPEICEKLIFKLVGWELSDIDVI 339
              + G +V          + +QVP+ P  +   E+F+ E  ++ +   VG +L+D++++
Sbjct: 207 APHSRGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEIL 266

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
               W + + VA ++     ++ LAGDA H  PP GG G+NTG+QDA NLAWK+A+VL+ 
Sbjct: 267 WKSIWGVRSRVATRYR--KGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLRG 324

Query: 400 IAPASILNTYETERKPIAE 418
            A  ++L+TYE ER+P+A 
Sbjct: 325 TAGEALLDTYEAERRPVAW 343

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score =  138 bits (351), Expect = 7e-35
 Identities = 119/406 (29%), Positives = 176/406 (43%), Gaps = 75/406 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGL 101
           VLIVGAGP GL L+I L + G+   ++EK    +  P        I  R   VF  L G+
Sbjct: 6   VLIVGAGPTGLTLAIELARRGVSFRLIEK----APEPFPGSRGKGIQPRTQEVFDDL-GV 60

Query: 102 AEEI---ERSQPPVDLWRKFIYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYK 156
            + +       PP+ ++R         G +  S    H++P   E    P+ V    Q++
Sbjct: 61  LDRVVAAGGLYPPMRIYRD-------DGSVAESDMFAHLEPTPDEPYPLPLMVP---QWR 110

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
             ++L ++L +L                   G  +  G E V          V A     
Sbjct: 111 TERILRERLAEL-------------------GHRVEFGCELVGFEQDAD--GVTARVAGP 149

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD-----LQKLVSVHFLSKDLGDYLL 271
               E  ++   L+G DG  S VRK +GI   GE       L   VS+  L +D      
Sbjct: 150 A--GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWP 207

Query: 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW 331
           +   GM+       A+  L   DL    F +Q P   P     D S +    L+ +  G 
Sbjct: 208 DGDMGMI-------ALCPLPGTDL----FQIQAPL--PPGGEPDLSADGLTALLAERTG- 253

Query: 332 ELSDIDVIDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAH 387
             +DI +  +  W     M+A +A+++     ++ LAGDA H  PPAGG G+NT VQDA+
Sbjct: 254 -RTDIRLHSV-TWASAFRMNARLADRYRV--GRVFLAGDAAHVHPPAGGQGLNTSVQDAY 309

Query: 388 NLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433
           NL WK+A+VL   AP ++L+TYE ER+P+A     LS +   A   
Sbjct: 310 NLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR 354

Length = 502

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  124 bits (314), Expect = 8e-31
 Identities = 83/406 (20%), Positives = 141/406 (34%), Gaps = 88/406 (21%)

Query: 43  VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVF-----RK 97
           ++ V IVGAGP GL L++ L + G+  ++LE+            +     +       R 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAGLDVTLLERAPR-------ELLERGRGIALSPNALRA 54

Query: 98  LD--GLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH--- 151
           L+  GL + +E    PP+                   V  +       ++   +      
Sbjct: 55  LERLGLWDRLEALGVPPLH------------------VMVVDDGGRRLLIFDAAELGRGA 96

Query: 152 ----FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCI 207
                 +  L   LL+    L                      +  G E  +V      +
Sbjct: 97  LGYVVPRSDLLNALLEAARALP------------------NVTLRFGAEVEAVEQDGDGV 138

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV------HF 261
            V  SF          +  ++L+G DGA S VR+  GI     +D  +   V        
Sbjct: 139 TVTLSF------DGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEP 192

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
                G+   +  P  L  + +  +  V              +P  P +  L+  S E  
Sbjct: 193 HEGRAGERFTHAGPFALLPLPDNRSSVVWS------------LPPGPAED-LQGLSDEEF 239

Query: 322 EKLIFKLVGWELSDIDVIDIKP---WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG 378
            + + + +G       V  +     + +   VAE++     +++L GDA H   P  G G
Sbjct: 240 LRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERY--RRGRVVLIGDAAHAMHPLAGQG 297

Query: 379 MNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
            N  ++DA  LA  +A+  +  A A+ L  YE  R+P AE    LS
Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLS 343

Length = 387

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score =  125 bits (315), Expect = 3e-30
 Identities = 104/409 (25%), Positives = 170/409 (41%), Gaps = 92/409 (22%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V+IVGAGPVGL L+ LL + G++  VLE+       P+A  I++    V + + GLA+
Sbjct: 11  TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLAD 69

Query: 104 EIER-SQPPVDLWRKFIYCTSVTGPILGSVDH--MQPQDFEKVVSPVSVAHFSQYKLNKL 160
           E+   + P   + R   +  +  G  L  +         + +  +      F Q  L  +
Sbjct: 70  EVLPHTTPNHGM-R---FLDA-KGRCLAEIARPSTGEFGWPRRNA------FHQPLLEAV 118

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           L   L +                       +  GHE  +++  D  + V  +   +G+  
Sbjct: 119 LRAGLARF------------------PHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQ-- 157

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-------E 273
              ++   ++G DGA S VR+ +G+        ++ + V  L  +      +        
Sbjct: 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPA 217

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWE 332
           RP             V + H  +  EF+L      P +  E   SPE           W 
Sbjct: 218 RPYTS----------VRLPHGRRRWEFML-----LPGETEEQLASPE---------NVWR 253

Query: 333 LSDIDVIDIKPWVM---------------HAEVAEKFLCCYNQIILAGDACHRFPPAGGF 377
           L       + PW                 HA VA+++     +++LAGDA H  PP  G 
Sbjct: 254 L-------LAPWGPTPDDAELIRHAVYTFHARVADRWRS--GRVLLAGDAAHLMPPFAGQ 304

Query: 378 GMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426
           GMN+G++DA NLAWK+A+VL+  A  ++L+TYE ER+P A     L+V+
Sbjct: 305 GMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVR 353

Length = 500

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score =  118 bits (297), Expect = 4e-28
 Identities = 105/387 (27%), Positives = 159/387 (41%), Gaps = 74/387 (19%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-------NKAFSTHPQAHFINNRYALVFRKL 98
           V+I+G GPVGL+L+  L   G+K  V+E+       +KA + HP+         L    +
Sbjct: 5   VIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRT--------LEILDM 56

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            GL E                                    F +    +   HF+     
Sbjct: 57  RGLLER-----------------------------------FLEKGRKLPSGHFAGLD-T 80

Query: 159 KLLLKQLE-KLNFK--ICTSEGTEGLHNHLLQ-GREILMGHECVSVSATDQCINVIASFL 214
           +L    L+   N+   +  +E  + L  H    G EI  G E ++V      + V+    
Sbjct: 81  RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVR-- 138

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G    R +  + ++G DGAGS VRK  GI   G  D          +  LGD +L + 
Sbjct: 139 --GPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPG-TDAT-------FTAMLGDVVLKDP 188

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEF-ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           P        T   GV++   L  G + +L +    PQ   ++  P   E+L   L+    
Sbjct: 189 PPSSVLSLCTREGGVMIV-PLSGGIYRVLIIDPERPQVPKDE--PVTLEELKTSLIRICG 245

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCY--NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAW 391
           +D  + D   W+     A +    Y   +I LAGDA H   PAGG G+N G+QDA NL W
Sbjct: 246 TDFGLNDPV-WMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGW 304

Query: 392 KIASVLKDIAPASILNTYETERKPIAE 418
           K+A+ +K  AP  +L++Y  ER P+  
Sbjct: 305 KLAAAIKGWAPDWLLDSYHAERHPVGT 331

Length = 493

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 85.8 bits (213), Expect = 2e-17
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ++LAGDA H   P GG G+NTGVQDA NL WK+A V+K  +P S+L+TY  ER P+A 
Sbjct: 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAA 324

Length = 488

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 9e-17
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY 409
           VAE F    ++I LAGDACH     GG G+NTG+ DA NL WK+  V+   A   +L +Y
Sbjct: 267 VAEHF-FIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSY 325

Query: 410 ETERKPIA 417
           E ERKP+A
Sbjct: 326 EAERKPVA 333

Length = 487

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 81.5 bits (202), Expect = 5e-16
 Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET 411
           ++F   + +++ AGDA H+  P G  G N+G+QDA NLAWK+A VL+  AP S+L++Y +
Sbjct: 294 DRFR--HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYAS 351

Query: 412 ER 413
           ER
Sbjct: 352 ER 353

Length = 547

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 78.5 bits (194), Expect = 5e-15
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA--- 417
           + +AGDACH      G GMN  +QD  NL WK+A+VL   +P  +L+TY  ER+ IA   
Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQEL 401

Query: 418 -----EFNTALSVQNFRAAMEVPSAL 438
                E++T ++          P+ L
Sbjct: 402 IDFDREWSTMMAAPPKEGGGVDPAEL 427

Length = 634

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 79/381 (20%), Positives = 133/381 (34%), Gaps = 63/381 (16%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           V+IVG G VGL L++ L++LG IK +++E N        A    +  +L      G  + 
Sbjct: 2   VIIVGGGLVGLSLALALSRLGKIKIALIEANSP----SAAQPGFDARSLALS--YGSKQI 55

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKV---VSPVSVAHFSQY----KL 157
           +E+    + LW K         PIL  +       F       S   +           L
Sbjct: 56  LEK----LGLWPKL---APFATPIL-DIHVSDQGHFGATHLRASEFGLPALGYVVELADL 107

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
            + LL +L  L   I                 ++        +      + V        
Sbjct: 108 GQALLSRLALLT-NI-----------------QLYCPARYKEIIRNQDYVRVTLD----- 144

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               + ++  +LI  DGA S VR+L+ I        Q  +  +   +        ER   
Sbjct: 145 --NGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFER--- 199

Query: 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIF--KLVGWELS 334
            F      A+  L   D      +  +P    Q   + +      E L    +  GW L 
Sbjct: 200 -FTPHGPLAL--LPLKDNYRSSLVWCLP--SKQADTIANLPDA--EFLAELQQAFGWRLG 252

Query: 335 DI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
            I  V + K + +   +AE  +  + +++L G+A     P  G G N G++D   LA  +
Sbjct: 253 KITQVGERKTYPLKLRIAETHV--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVL 310

Query: 394 ASVLKDIAPASILNTYETERK 414
                D+   ++L  Y   R+
Sbjct: 311 IDARIDLGTYALLQEYLRRRQ 331

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 51.8 bits (125), Expect = 9e-07
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 22 PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           + Y                A  PV++VGAGPVGL L+I L + G+   +L+ +   ST
Sbjct: 7  KFPYRPHADQDADDP-----ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST 60

Length = 547

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETER 413
              ++ L GDA HR  P  G G+N G  D  +L   +A   SV  DI   S L  YE ER
Sbjct: 331 VTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERER 390

Query: 414 KP 415
             
Sbjct: 391 YA 392

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETERKP 415
           + L GDA H   P  G G+N G++D   LA  +       +DI    +L  YE  R+ 
Sbjct: 280 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRF 337

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 44.9 bits (107), Expect = 9e-05
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +  +VA +F     +  L G+A H FPP G  G+N G++D   L   +    +D   A
Sbjct: 267 WPLSGQVAHRF--AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSA 324

Query: 404 SILNTYETERKP 415
           ++L  Y+  R+P
Sbjct: 325 AVLAAYDRARRP 336

Length = 388

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
            IVG GP G++L +LL + G+  +VLEK+  F
Sbjct: 9  CCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF 41

Length = 407

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKP 415
           L GDA H   P GG G+N G++DA  LA  + +     +DI   ++L  YE  RK 
Sbjct: 298 LVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKR 353

Length = 415

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
            V I+GAGP GL+L  LL   GI   VLE+
Sbjct: 3  TQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

Length = 392

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 43/210 (20%), Positives = 64/210 (30%), Gaps = 47/210 (22%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD-GLAEE 104
           V+IVGAGP G   +  L K G+   VLEK       P              +L     EE
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGL--SPRALEELIPDFDEE 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           IER      +    IY       I   V          +V           K +K L ++
Sbjct: 64  IER-----KVTGARIYFPGEKVAIEVPV------GEGYIVDRA--------KFDKWLAER 104

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
            E+                    G E+  G     V   D    V+             +
Sbjct: 105 AEE-------------------AGAELYPGTRVTGVIRED--DGVVVGVRAGDD----EV 139

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
           +  ++I  DG  S + + +G+     +D  
Sbjct: 140 RAKVVIDADGVNSALARKLGLKDRKPEDYA 169

Length = 396

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-IAPASILNTYETERKPIAE- 418
           ++L GDA H   P  G GMN  ++DA  L   +   L   IA A  L  +E  R+P+ E 
Sbjct: 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEA 346

Query: 419 ---FNTALS---------VQNFRAAMEV----PSALG 439
              +  AL+         V NFR+ ++      + LG
Sbjct: 347 VISYGHALATTYHDRAALVANFRSQLQTSGRDAAWLG 383

Length = 388

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS--VLKDIAPASILNTYETERK 414
           + L GDA H   P  G GMN G++D   LA  +A     +D+    +L  YE  R+
Sbjct: 282 VALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARR 337

Length = 388

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 54/227 (23%), Positives = 80/227 (35%), Gaps = 64/227 (28%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNR-YALVFRKLDGLAE 103
           ++IVG GPVGL L++ L + G +K +++E        P     +NR  AL          
Sbjct: 2   IVIVGGGPVGLALALALARSGGLKVALIEATPL--PAPADPGFDNRVSAL---------- 49

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
               S   + L  K           LG  D ++P        P+   H S          
Sbjct: 50  ----SAASIRLLEK-----------LGVWDKIEPAR----AQPIRDIHVSDGG------- 83

Query: 164 QLEKLNFKICTSEGTEGL----HNHLLQGR------------EILMGHECVSVSATDQCI 207
               L+F      G E L     N +LQ               IL     V +      +
Sbjct: 84  SFGALHFD-ADEIGLEALGYVVENRVLQQALWERLQELPNRVTILCPARVVELPRHSDHV 142

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
            +    L +G    + ++  +L+G DGA S VR+L GI   G    Q
Sbjct: 143 ELT---LDDG----QQLRARLLVGADGANSKVRQLAGIPTTGWDYGQ 182

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 60/215 (27%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           +++VGAGP GL  +  L   G+K +++E+       P A   +  +       DG   EI
Sbjct: 6   IVVVGAGPAGLSFARSLAGSGLKVTLIER------QPLAALADPAF-------DG--REI 50

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
             +    ++ ++           LG+ D + P+D    +SP+  A     +         
Sbjct: 51  ALTHASREILQR-----------LGAWDRI-PED---EISPLRDAKVLNGRSPFA----- 90

Query: 166 EKLNFKICTSEGTEGL----HNHLL-----------QGREILMGHECVSVSATDQCINVI 210
             L F      G + L     NHL+            G E+L G    +V   D    V 
Sbjct: 91  --LTFDA-RGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVT 147

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI 245
              L  G    R +   +L+  D   S  R+ +GI
Sbjct: 148 ---LANG----RRLTARLLVAADSRFSATRRQLGI 175

Length = 392

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 302 LQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDIDVID--IKPWVMHAEVAEKFL 355
           LQ P       +ED+S E   ++L  +L       L     I+  I P  + + VAE   
Sbjct: 223 LQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAP--LRSFVAEPMQ 277

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             Y ++ LAGDA H  PP G  G+N    D   LA  +    ++
Sbjct: 278 --YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE 319

Length = 392

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V V IVGAGP GL  +  L K G+K +V E+  +F
Sbjct: 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60

Length = 257

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++GAG  GL  + LL + G+K +VLEKN
Sbjct: 6  VVVIGAGLNGLAAAALLARAGLKVTVLEKN 35

Length = 487

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 48 IVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          IVGAG  GLV + LL K G    VLEK 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKR 28

Length = 66

>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
           Y ++ LAGDA H  PP G  G+N    D H L
Sbjct: 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYL 309

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway [Energy metabolism, Other]. Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	712
PRK06126	545	hypothetical protein; Provisional	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PLN02985	514	squalene monooxygenase	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.96
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.96
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.96
PRK11445	351	putative oxidoreductase; Provisional	99.95
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.95
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.92
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.92
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.91
PRK10015	429	oxidoreductase; Provisional	99.9
PRK10157	428	putative oxidoreductase FixC; Provisional	99.89
PLN02697	529	lycopene epsilon cyclase	99.87
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.85
PLN02463	447	lycopene beta cyclase	99.84
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.83
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.8
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.76
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.36
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.29
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.29
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.17
COG2081	408	Predicted flavoproteins [General function predicti	99.11
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.09
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.08
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.05
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.03
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.02
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.0
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.99
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.99
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.98
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.97
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.95
COG0579	429	Predicted dehydrogenase [General function predicti	98.95
PRK05257	494	malate:quinone oxidoreductase; Validated	98.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.9
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.89
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.88
PRK07233	434	hypothetical protein; Provisional	98.86
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.86
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.85
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.83
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.83
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.82
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.81
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.81
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.8
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.79
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.77
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.76
PLN02612	567	phytoene desaturase	98.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.71
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.71
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.7
PLN02661	357	Putative thiazole synthesis	98.7
PRK08274	466	tricarballylate dehydrogenase; Validated	98.69
PRK07121	492	hypothetical protein; Validated	98.65
PRK07804	541	L-aspartate oxidase; Provisional	98.63
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.62
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.62
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.6
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.6
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.59
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.58
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.58
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.58
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.58
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.57
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.56
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.56
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.55
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.54
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.54
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.53
PLN02268	435	probable polyamine oxidase	98.52
PLN02576	496	protoporphyrinogen oxidase	98.51
PRK06175	433	L-aspartate oxidase; Provisional	98.49
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.49
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.49
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.46
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.45
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.45
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.45
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.44
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.44
PRK08275	554	putative oxidoreductase; Provisional	98.42
PLN02676	487	polyamine oxidase	98.42
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.42
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.4
KOG2853	509	consensus Possible oxidoreductase [General functio	98.39
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.36
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.36
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
PRK08401	466	L-aspartate oxidase; Provisional	98.33
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.31
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.3
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.29
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.29
PRK09077	536	L-aspartate oxidase; Provisional	98.28
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.27
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.27
PRK08071	510	L-aspartate oxidase; Provisional	98.27
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.27
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.26
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.25
PRK09897	534	hypothetical protein; Provisional	98.24
PLN02815	594	L-aspartate oxidase	98.23
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.22
PRK10262	321	thioredoxin reductase; Provisional	98.22
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.21
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.21
PLN02568	539	polyamine oxidase	98.2
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.2
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.2
PRK06116	450	glutathione reductase; Validated	98.18
PRK06370	463	mercuric reductase; Validated	98.15
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.13
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.13
PRK07395	553	L-aspartate oxidase; Provisional	98.12
PRK14694	468	putative mercuric reductase; Provisional	98.11
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.1
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.09
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.09
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.09
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.07
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.06
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.05
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.05
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.03
PRK12839	572	hypothetical protein; Provisional	98.03
PLN03000	881	amine oxidase	98.02
PTZ00058	561	glutathione reductase; Provisional	98.02
PLN02507	499	glutathione reductase	98.01
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.01
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.01
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.01
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.0
PRK07512	513	L-aspartate oxidase; Provisional	98.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.99
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.97
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.95
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.95
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.94
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.92
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.91
PRK13748	561	putative mercuric reductase; Provisional	97.89
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.85
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.84
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.84
PRK14727	479	putative mercuric reductase; Provisional	97.83
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.83
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.83
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.81
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.79
PTZ00052	499	thioredoxin reductase; Provisional	97.78
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.78
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.76
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.75
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.71
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.68
PRK07208	479	hypothetical protein; Provisional	97.67
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.66
PLN02852	491	ferredoxin-NADP+ reductase	97.65
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.64
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.62
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.62
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.61
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.6
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.58
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.58
PLN02487	569	zeta-carotene desaturase	97.58
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.58
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.57
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.56
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.56
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.54
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.53
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.53
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.53
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.52
TIGR02053	463	MerA mercuric reductase. This model represents the	97.52
PRK06370	463	mercuric reductase; Validated	97.51
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.47
COG3349	485	Uncharacterized conserved protein [Function unknow	97.44
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.44
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.42
PTZ00188	506	adrenodoxin reductase; Provisional	97.42
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.42
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.42
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.4
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.39
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.38
KOG2852	380	consensus Possible oxidoreductase [General functio	97.37
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.36
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.34
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.32
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.32
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.32
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.3
TIGR02053	463	MerA mercuric reductase. This model represents the	97.29
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.29
PRK12831	464	putative oxidoreductase; Provisional	97.27
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.27
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.24
cd02979	167	PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami	97.23
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.23
PRK07846	451	mycothione reductase; Reviewed	97.21
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.21
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.2
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.19
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.19
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.18
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.17
PLN02507	499	glutathione reductase	97.17
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.15
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.13
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.11
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.09
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.08
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.07
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.07
PLN02546	558	glutathione reductase	97.06
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.04
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.04
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.03
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.03
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.02
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.01
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.98
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.98
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.96
PLN02785	587	Protein HOTHEAD	96.95
COG3573	552	Predicted oxidoreductase [General function predict	96.94
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.93
PRK14694	468	putative mercuric reductase; Provisional	96.92
PRK02106	560	choline dehydrogenase; Validated	96.91
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.9
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.89
PLN02529	738	lysine-specific histone demethylase 1	96.89
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.88
PRK07846	451	mycothione reductase; Reviewed	96.86
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.86
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.86
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.85
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.85
PTZ00058	561	glutathione reductase; Provisional	96.85
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.83
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.82
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.81
PTZ00052	499	thioredoxin reductase; Provisional	96.79
PRK14727	479	putative mercuric reductase; Provisional	96.79
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.77
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.73
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.73
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.72
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.68
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.67
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.66
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.66
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.61
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.61
PRK13748	561	putative mercuric reductase; Provisional	96.6
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.56
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.5
PRK10262	321	thioredoxin reductase; Provisional	96.48
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.29
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.27
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.26
PLN02546	558	glutathione reductase	96.24
PRK13984	604	putative oxidoreductase; Provisional	96.18
PLN02976	1713	amine oxidase	96.15
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.14
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.01
COG2907	447	Predicted NAD/FAD-binding protein [General functio	95.96
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.93
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.92
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.9
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.87
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	95.85
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	95.83
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.78
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.73
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.31
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.23
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.22
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.12
PRK12831	464	putative oxidoreductase; Provisional	94.99
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	94.98
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.85
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.25
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.08
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.07
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.06
KOG2960	328	consensus Protein involved in thiamine biosynthesi	94.05
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.05
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	93.99
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.83
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.72
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.68
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.61
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.51
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	93.5
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.39
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	93.36
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	92.88
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	92.86
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.63
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.54
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	92.36
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.12
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.01
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	91.84
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.38
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.37
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.02
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.94
PRK06719	157	precorrin-2 dehydrogenase; Validated	90.86
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	90.82
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	90.82
PRK06116	450	glutathione reductase; Validated	90.8
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.75
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	90.68
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	90.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	90.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.56
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.42
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	90.28
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.27
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.03
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.95
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	89.91
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.84
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.79
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	89.79
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	89.76
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.76
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.74
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.68
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	89.64
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	89.49
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	89.39
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.3
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.22
PRK12779	944	putative bifunctional glutamate synthase subunit b	89.14
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.07
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.87
PLN02712	667	arogenate dehydrogenase	88.8
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	88.66
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	88.6
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	88.6
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.38
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.32
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.25
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.17
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.1
PTZ00082	321	L-lactate dehydrogenase; Provisional	87.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.71
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	87.66
PRK04148	134	hypothetical protein; Provisional	87.59
PRK06223	307	malate dehydrogenase; Reviewed	87.56
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	87.5
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	87.49
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.33
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.29
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	87.18
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.82
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.67
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.66
PRK07417	279	arogenate dehydrogenase; Reviewed	86.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	86.57
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	86.56
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.52
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	86.41
PRK09496	453	trkA potassium transporter peripheral membrane com	86.22
PLN02602	350	lactate dehydrogenase	86.12
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.11
PLN02353	473	probable UDP-glucose 6-dehydrogenase	86.06
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	86.01
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	85.87
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	85.84
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.66
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	85.62
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	85.47
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	85.45
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	85.3
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.28
PRK10669	558	putative cation:proton antiport protein; Provision	85.23
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	85.18
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.13
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.94
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	84.86
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	84.64
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.59
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	84.5
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	84.13
PRK08328	231	hypothetical protein; Provisional	84.09
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	84.07
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	83.88
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	83.81
PRK05866	293	short chain dehydrogenase; Provisional	83.79
PTZ00117	319	malate dehydrogenase; Provisional	83.57
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	83.49
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	83.47
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	83.41
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	83.32
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	83.27
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	83.22
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	83.11
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	82.99
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	82.71
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	82.71
PRK13984	604	putative oxidoreductase; Provisional	82.51
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	82.41
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	82.4
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.11
PRK08223	287	hypothetical protein; Validated	82.06
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	81.99
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.96
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	81.95
PLN02494	477	adenosylhomocysteinase	81.57
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.42
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.39
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.2
PRK09496	453	trkA potassium transporter peripheral membrane com	81.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.82
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.81
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	80.78
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	80.72
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	80.56
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	80.51
PLN02695	370	GDP-D-mannose-3',5'-epimerase	80.29
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	80.28
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	80.03
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.01

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-81  Score=719.72  Aligned_cols=534  Identities=29%  Similarity=0.458  Sum_probs=413.1

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~  118 (712)
                      |++.++||+||||||+||++|++|+++|++|+||||++.+...+++..+++++|++|+++ ||.+++.+.+.+.......
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~   81 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDI   81 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCc
Confidence            446679999999999999999999999999999999999999999999999999999999 9999999988766444455


Q ss_pred             EeeecCCCCeeeeecCCCccc-cc-------cccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccce
Q 005134          119 IYCTSVTGPILGSVDHMQPQD-FE-------KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~-~~-------~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (712)
                      .++....|+.+.++....... ..       ...+|+....++|..|+++|++.+.+.+.                  ++
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~------------------v~  143 (545)
T PRK06126         82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPG------------------VT  143 (545)
T ss_pred             eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCC------------------ce
Confidence            566666777776654322111 00       11244556789999999999999887532                  49


Q ss_pred             EEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (712)
Q Consensus       191 v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  270 (712)
                      |+++++|+++++++++|++++.+..+|+  .+++++||||+|||++|.||+++|+.+.|....+..+.+.+..+++....
T Consensus       144 i~~~~~v~~i~~~~~~v~v~~~~~~~g~--~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  221 (545)
T PRK06126        144 LRYGHRLTDFEQDADGVTATVEDLDGGE--SLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALV  221 (545)
T ss_pred             EEeccEEEEEEECCCeEEEEEEECCCCc--EEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHh
Confidence            9999999999999999988887544553  46899999999999999999999999999888887788878766554432


Q ss_pred             ccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhh
Q 005134          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV  350 (712)
Q Consensus       271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~v  350 (712)
                       ...+...+++++|+..+++...+. ...|.+. .+.+. .....++++.+.+.+++.++. ...+++.....|.+...+
T Consensus       222 -~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~w~~~~~~  296 (545)
T PRK06126        222 -GHDPAWMYWLFNPDRRGVLVAIDG-RDEWLFH-QLRGG-EDEFTIDDVDARAFVRRGVGE-DIDYEVLSVVPWTGRRLV  296 (545)
T ss_pred             -cCCCceEEEEECCCccEEEEEECC-CCeEEEE-EecCC-CCCCCCCHHHHHHHHHHhcCC-CCCeEEEeecccchhhee
Confidence             234455677778876666666553 3567665 22222 222356778889999999984 456778888899999999


Q ss_pred             hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (712)
Q Consensus       351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~  430 (712)
                      +++|+  +|||||+|||||.|+|++|||||+||+||+||+|||++++++++.+++|++|++||+|+++.+++.+..+...
T Consensus       297 a~~~~--~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~  374 (545)
T PRK06126        297 ADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADA  374 (545)
T ss_pred             hhhhc--cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Confidence            99998  4999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             hcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccc
Q 005134          431 AMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQ  510 (712)
Q Consensus       431 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (712)
                      +.....    .+                                         ...+.++.+...|+++.+++.......
T Consensus       375 ~~~~~~----~~-----------------------------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~  409 (545)
T PRK06126        375 LGSFPV----PP-----------------------------------------EIEDDGPAGDAARRKVGDALSEHARQE  409 (545)
T ss_pred             hccccc----ch-----------------------------------------hhccCChhHHHHHHHHHHHHhhccccc
Confidence            421100    00                                         001223344444555555443333333


Q ss_pred             ccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcC
Q 005134          511 LQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAP  590 (712)
Q Consensus       511 ~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~  590 (712)
                      +...++++||+|.+++++.+++.+     +|.++...|.|+++||+|+||+||.    +++||+||+|.   +||||++.
T Consensus       410 ~~~~~~~~g~~Y~~~~~~~~~~~~-----~~~~~~~~~~~~~~pG~r~ph~~l~----~~~s~~dl~g~---~f~Ll~~~  477 (545)
T PRK06126        410 FNSPGITLGYRYDGSPIIVPDGTP-----PPPDDPGVYVPSACPGGRAPHAWLS----DGRSLYDLFGP---GFTLLRFG  477 (545)
T ss_pred             cccceeeecceecCCceecCCCCC-----CCCCcccccccCCCCCcCCCCeeec----CCcchHHhcCC---ceEEEecC
Confidence            444568899999999988755332     1223345689999999999999996    35899999985   49999987


Q ss_pred             CccchHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEc
Q 005134          591 VEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVR  670 (712)
Q Consensus       591 ~~~~~~~~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVR  670 (712)
                      ++  ..|.+++.++++.+|+||+++.++.                                 .+|.   ++++.||||||
T Consensus       478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~---~~~~~~avLvR  519 (545)
T PRK06126        478 DA--AVDVAPLEAAAAALGVPLAVVDLPG---------------------------------PEAA---ALYEADLVLVR  519 (545)
T ss_pred             CC--cHHHHHHHHHHHHhCCceEEEEeCc---------------------------------HHhH---hhccCCEEEEC
Confidence            54  3699999999999999999999931                                 1333   34578999999


Q ss_pred             CCceEEEeeCCCCCCChHHHHHHHHH
Q 005134          671 PDDHIAWRSKSGVSGNPKLEMEMAFS  696 (712)
Q Consensus       671 PDg~VaWr~~~~~~~~~~~~l~~~~~  696 (712)
                      ||||||||+++. ++|+.+.|+++|.
T Consensus       520 PD~~vawr~~~~-~~~~~~~l~~~~~  544 (545)
T PRK06126        520 PDQHVAWRGDAA-PDDAAALLDQVLG  544 (545)
T ss_pred             CCCceeeccCCC-CCCHHHHHHHHhc
Confidence            999999999865 7888887777654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=2.8e-65  Score=584.58  Aligned_cols=522  Identities=23%  Similarity=0.344  Sum_probs=360.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .++||+||||||+||++|+.|+++|++|+||||++.+...+++..+++++|++|+++ |+.+++.+.+.+.....  .+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~--~~~   98 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGK--VFL   98 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeecee--EEe
Confidence            568999999999999999999999999999999998888999999999999999999 99999988775432211  111


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                      .   +..+..++......    ........++|..|+++|.+++.+.+.                  +++++++++++++
T Consensus        99 ~---~~~~~~~~~~~~~~----~~~~~~~~~~q~~le~~L~~~~~~~~~------------------v~v~~~~~v~~i~  153 (547)
T PRK08132         99 R---DEEVYRFDLLPEPG----HRRPAFINLQQYYVEGYLVERAQALPN------------------IDLRWKNKVTGLE  153 (547)
T ss_pred             C---CCeEEEecCCCCCC----CCCCceEecCHHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEE
Confidence            1   12222222111000    001124568999999999999987642                  4999999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEE
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (712)
                      ++++++++++... ++   .+++++||||+|||++|.||+.+|+++.|......++.+......  .+    .....+++
T Consensus       154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~--~~----~~~~~~~~  223 (547)
T PRK08132        154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA--DF----PTERWFWF  223 (547)
T ss_pred             EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC--CC----CCeeeEEE
Confidence            9999988887632 23   247999999999999999999999999887665555544332210  00    01112222


Q ss_pred             e---ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccC
Q 005134          282 F---NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (712)
Q Consensus       282 ~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~  358 (712)
                      .   +++. .+++. ....+.|.+..............+.+.+.+.++++++.. .++++.....|.++.+++++|+  +
T Consensus       224 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~--~  298 (547)
T PRK08132        224 DPPFHPGQ-SVLLH-RQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFR--H  298 (547)
T ss_pred             eccCCCCc-EEEEE-eCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccc--c
Confidence            1   2222 22222 223355654432221111112345677888899988743 4556666677888999999998  4


Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhccccccc
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL  438 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~  438 (712)
                      |||||+|||||.|+|++|||||+||+||+||+|||+.+++|++.+++|++|++||+|+++.+++.+..+...+...    
T Consensus       299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~----  374 (547)
T PRK08132        299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK----  374 (547)
T ss_pred             ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999998876554432110    


Q ss_pred             CCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005134          439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL  518 (712)
Q Consensus       439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  518 (712)
                        .+ ...                .++...+..            + .        +...++..+..        ....+
T Consensus       375 --~~-~~~----------------~~r~~~~~~------------~-~--------~~~~~~~~~~~--------~~~~~  406 (547)
T PRK08132        375 --SP-VSR----------------LFRDAVLRL------------A-R--------DHPFARRLVNS--------GRLSV  406 (547)
T ss_pred             --CH-HHH----------------HHHHHHHhh------------h-c--------ccHHHHHHHhc--------ccccc
Confidence              00 000                000000000            0 0        00111222211        11247


Q ss_pred             CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHH
Q 005134          519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLA  598 (712)
Q Consensus       519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~  598 (712)
                      +++|.+++++.++.             ..|.++.+||.|+||+||.. +++++||+||+|.   +|+||++.++  ..| 
T Consensus       407 ~~~y~~~~~~~~~~-------------~~~~~~~~pG~r~p~~~~~~-~~~~~~l~dl~g~---~f~ll~~~~~--~~~-  466 (547)
T PRK08132        407 PAVYADSPLNTPDG-------------DAFAGGPVPGAPAPDAPVRA-DGEPGWLLDLLGG---GFTLLLFGDD--AAA-  466 (547)
T ss_pred             CcccCCCCCCCCcc-------------cccCCCCCCCCCCCCCcccC-CCCceEHHHhcCC---CEEEEEecCC--chh-
Confidence            89999998874321             12557789999999999975 5667899999974   5999997653  346 


Q ss_pred             HHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEe
Q 005134          599 RAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR  678 (712)
Q Consensus       599 ~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr  678 (712)
                      .++.+++...+++++++.+++++..        + ... .++.|.        ++.|.+.+++.+.++||||||||||||
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~-~~~~d~--------~~~~~~~~~~~~~~~~LvRPDg~va~~  528 (547)
T PRK08132        467 AALLQALAAAALPVRVVAVVPAGAA--------Q-AAA-GVLEDA--------DGLAAERYDARPGTVYLIRPDQHVAAR  528 (547)
T ss_pred             hhhhhhhhccCCceEEEEEecCccc--------c-cCc-ccccCc--------ccHHHHHhCCCCCeEEEECCCceEEEE
Confidence            3555566778999999998543210        0 001 134453        268999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHhhC
Q 005134          679 SKSGVSGNPKLEMEMAFSAVLG  700 (712)
Q Consensus       679 ~~~~~~~~~~~~l~~~~~~~~~  700 (712)
                      ...    +....|...|+++++
T Consensus       529 ~~~----~~~~~~~~~l~~~~~  546 (547)
T PRK08132        529 WRT----PDAAAVRAALARALG  546 (547)
T ss_pred             ecC----CCHHHHHHHHHHHhc
Confidence            652    233557777777655

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-63  Score=564.49  Aligned_cols=489  Identities=24%  Similarity=0.323  Sum_probs=343.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .++||+||||||+||++|+.|+++|++|+||||++.+...+++..|++++||+|+++ |+.+++.+.+.+......  +.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~--~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRI--YR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeE--Ee
Confidence            458999999999999999999999999999999999988999999999999999999 999999987765432211  11


Q ss_pred             ecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                         .+..+.......... .....++ ....++|..|+++|.+.+.+.|+                   +|+++++++++
T Consensus        79 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i  135 (502)
T PRK06184         79 ---DDGSVAESDMFAHLE-PTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGF  135 (502)
T ss_pred             ---CCceEEEeecccccc-CCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEE
Confidence               112122111111000 0001121 23578999999999999988876                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccc-cEEEEEeecCccccccccCCCceEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      ++++++|++++...+++    ++++|||||+|||++|.||+++|+++.|..... .++...+....   .    .....+
T Consensus       136 ~~~~~~v~v~~~~~~~~----~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~---~----~~~~~~  204 (502)
T PRK06184        136 EQDADGVTARVAGPAGE----ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG---L----DRDAWH  204 (502)
T ss_pred             EEcCCcEEEEEEeCCCe----EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec---C----CCcceE
Confidence            99999998887633222    479999999999999999999999999877654 44443332211   1    111222


Q ss_pred             EEeecC-CeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcce-EEEeecceechhhhcccccc
Q 005134          280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       280 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~-i~~~~~w~~~~~va~~~~~~  357 (712)
                      ++..+. ...++++.+. ...|.+.+....  ......+++.+.++++...+.....++ +.....|.+..+++++|+  
T Consensus       205 ~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--  279 (502)
T PRK06184        205 QWPDGDMGMIALCPLPG-TDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR--  279 (502)
T ss_pred             EccCCCCcEEEEEEccC-CCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc--
Confidence            222332 2233334332 235655554322  222456788889999988875543332 334566888888999998  


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccc
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA  437 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~  437 (712)
                      +|||||+|||||.|+|++|||||+||+||+||+|||+++++| +.+.+|++|++||+|+++.+++.+...++....    
T Consensus       280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~----  354 (502)
T PRK06184        280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR----  354 (502)
T ss_pred             CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence            499999999999999999999999999999999999999999 889999999999999999998877654432210    


Q ss_pred             cCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccc
Q 005134          438 LGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAED  517 (712)
Q Consensus       438 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (712)
                                              ..                              .++.               .....
T Consensus       355 ------------------------~~------------------------------~~~~---------------~~~~~  365 (502)
T PRK06184        355 ------------------------GD------------------------------MRRG---------------RDVQQ  365 (502)
T ss_pred             ------------------------HH------------------------------hhcc---------------cchhc
Confidence                                    00                              0000               00113


Q ss_pred             cCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH
Q 005134          518 LGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL  597 (712)
Q Consensus       518 lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~  597 (712)
                      ++.+|..++++..++.              ..++.+||.|+||+||...+++.+||+|+++.+  +|+||++.+.   .|
T Consensus       366 ~~~~y~~~~~~~~~~~--------------~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~--~~~ll~~~~~---~~  426 (502)
T PRK06184        366 LDLGYRGSSLAVDGPE--------------RTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGP--HWTLLAFGAG---AA  426 (502)
T ss_pred             ceeecCCCcccCCCcc--------------cCCCCCCcCCCCCchhccCCCceeeHHHhhCCC--cEEEEEecCC---ch
Confidence            5667777777543211              024578999999999975345678999999753  5999986532   23


Q ss_pred             HHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEE
Q 005134          598 ARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAW  677 (712)
Q Consensus       598 ~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaW  677 (712)
                      ..     ....  ++.++.+++...              ..++.|.        .+.|.+.+++...++|||||||||||
T Consensus       427 ~~-----~~~~--~~~~~~~~~~~~--------------~~~~~d~--------~g~~~~~~~~~~~~~~lvRPDg~v~~  477 (502)
T PRK06184        427 AI-----LARR--GLRIHRVGDAAE--------------GGDLVDD--------AGHFRDAYGLTGGTLVLVRPDGYVGL  477 (502)
T ss_pred             hh-----hhhc--CceEEEecccCC--------------CCceeCC--------CccHHHHhcCCCCcEEEECCCcceEE
Confidence            21     1233  467777753210              1135553        26899999999999999999999999


Q ss_pred             eeCCCCCCChHHHHHHHHHHh
Q 005134          678 RSKSGVSGNPKLEMEMAFSAV  698 (712)
Q Consensus       678 r~~~~~~~~~~~~l~~~~~~~  698 (712)
                      |...    +....|.+.|+++
T Consensus       478 ~~~~----~~~~~~~~~l~~~  494 (502)
T PRK06184        478 IAAG----DDAAALEAYLARV  494 (502)
T ss_pred             EecC----CCHHHHHHHHHHh
Confidence            9652    2344577777665

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=8.3e-61  Score=541.50  Aligned_cols=488  Identities=25%  Similarity=0.364  Sum_probs=326.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++|+|+++ |+.+++.+.+.+.....   +. 
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~-   76 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA-   76 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence            48999999999999999999999999999999999988999999999999999999 99999988775543211   11 


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                      ...+.    ++..   ...  ......+.++|..++++|.+.+++.|+                   +++++++++++++
T Consensus        77 ~~~~~----~~~~---~~~--~~~~~~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~  128 (493)
T PRK08244         77 GLDTR----LDFS---ALD--TSSNYTLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ  128 (493)
T ss_pred             ccccc----CCcc---cCC--CCCCcEEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence            11110    1110   000  111123568999999999999988876                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (712)
                      +++++++++... +|   .+++++||||+|||++|.||+++|+++.|.......+...+....       ..+...+..+
T Consensus       129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~  197 (493)
T PRK08244        129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD-------PPPSSVLSLC  197 (493)
T ss_pred             cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC-------CCCcceeEEE
Confidence            999988887632 23   247999999999999999999999998877654443333332211       1112233345


Q ss_pred             ecCCeEEEEEecCCCCeEEEEEecC--CCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCc
Q 005134          283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (712)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gR  360 (712)
                      +++...++++.+  ++.+.+.+...  .+.......+.+.+.+.+++.++......+......|....+++++|+  +||
T Consensus       198 ~~~g~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~gR  273 (493)
T PRK08244        198 TREGGVMIVPLS--GGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR--SGR  273 (493)
T ss_pred             eCCceEEEEECC--CCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc--cCc
Confidence            666555555554  34444433211  111122345677788888888775432222333445677778999998  599


Q ss_pred             EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccccCC
Q 005134          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL  440 (712)
Q Consensus       361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~g~  440 (712)
                      |||+|||||.++|++|||||+||+||+||+|||+++++|++.+.+|++|++||+|+++.++..+......+..       
T Consensus       274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~-------  346 (493)
T PRK08244        274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF-------  346 (493)
T ss_pred             EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC-------
Confidence            9999999999999999999999999999999999999999999999999999999999888765432222100       


Q ss_pred             CcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccccCc
Q 005134          441 DPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGF  520 (712)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgy  520 (712)
                      ++ ...                .++. .+..+           + .  .+       .+++.+..        ....+++
T Consensus       347 ~~-~~~----------------~~R~-~~~~~-----------~-~--~~-------~~~~~~~~--------~~~~~~~  379 (493)
T PRK08244        347 TR-PGL----------------ALRS-MLSDL-----------L-G--FP-------EVNRYLAG--------QISALDV  379 (493)
T ss_pred             Cc-hhH----------------HHHH-HHHHH-----------h-c--ch-------HHHHHHHH--------HHhcCCc
Confidence            00 000                0000 00000           0 0  00       00111100        0134788


Q ss_pred             cccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHHH
Q 005134          521 RYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARA  600 (712)
Q Consensus       521 ~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~a  600 (712)
                      +|..++..            +        +...||.|+||+||...++.+++++|+++.+  +|+||++.+.. ..|.  
T Consensus       380 ~Y~~~~~~------------~--------~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~--~~~ll~~~~~~-~~~~--  434 (493)
T PRK08244        380 HYEPDAEM------------P--------PHPLNGKRLPDLELTLSDGESERLYSLLHKG--TFLLLSFGSEP-QDWS--  434 (493)
T ss_pred             ccCCCCcc------------C--------CCCCCCCCCCCcceecCCCCceeHHHhhcCC--eEEEEEecCCc-cccc--
Confidence            89532210            0        1247999999999964344558999999865  49999876432 1221  


Q ss_pred             HHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEeeC
Q 005134          601 ALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSK  680 (712)
Q Consensus       601 a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr~~  680 (712)
                             ...+++++.....                     |..        ..|.      ...+||||||||||||++
T Consensus       435 -------~~~~~~~~~~~~~---------------------~~~--------~~~~------~~~~~lvRPDg~vaw~~~  472 (493)
T PRK08244        435 -------RYPHVRVVRASLA---------------------EGR--------ADWN------DVHTALIRPDGHVAWAVD  472 (493)
T ss_pred             -------cCCceEEEecccc---------------------ccc--------CccC------CCceEEECCCCceEEeec
Confidence                   1245555543100                     000        1231      125899999999999986


Q ss_pred             CCCCCChHHHHHHHHHHhhC
Q 005134          681 SGVSGNPKLEMEMAFSAVLG  700 (712)
Q Consensus       681 ~~~~~~~~~~l~~~~~~~~~  700 (712)
                      .. ..++.+.|.++|.+.+|
T Consensus       473 ~~-~~~~~~~~~~~l~~~~~  491 (493)
T PRK08244        473 AS-DPNAEEAIAAGISRWCG  491 (493)
T ss_pred             CC-cccchHHHHHHHHHhhC
Confidence            32 34555678999988775

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=1.9e-55  Score=502.19  Aligned_cols=523  Identities=25%  Similarity=0.328  Sum_probs=339.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +..+||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...   +.+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~~   83 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHG---MRF   83 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCc---eEE
Confidence            3458999999999999999999999999999999999988999999999999999999 999999887755432   222


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      . +..|+.+..++......    ........+.|..|+++|++.+.+. |+                   +|+++++|++
T Consensus        84 ~-~~~g~~~~~~~~~~~~~----~g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~  139 (538)
T PRK06183         84 L-DAKGRCLAEIARPSTGE----FGWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA  139 (538)
T ss_pred             E-cCCCCEEEEEcCCCCCC----CCCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence            2 23455554443211111    0111235688999999999998875 44                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++++++|++++... +|+  +++++|||||||||++|.||+++|+.+.+......++.+.+......     ......+
T Consensus       140 i~~~~~~v~v~~~~~-~G~--~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  211 (538)
T PRK06183        140 LTQDDDGVTVTLTDA-DGQ--RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDP-----LGGPHTY  211 (538)
T ss_pred             EEEcCCeEEEEEEcC-CCC--EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCc-----cCCCceE
Confidence            999999998887632 342  46899999999999999999999999888776666665543221111     1112234


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCC-CHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccC
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~  358 (712)
                      +.++++...++++...+..+|.+.+  .+. +..+.+ +++.+.++++.+. ..+...++.....|.++.+++++|+  +
T Consensus       212 ~~~~~~~~~~~~p~~~~~~r~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~--~  285 (538)
T PRK06183        212 QYCDPARPYTSVRLPHGRRRWEFML--LPG-ETEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWR--S  285 (538)
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEEe--CCC-CChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhc--c
Confidence            4556665555555433222343332  222 222233 4566777776553 2233456666677888888999998  4


Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhccccccc
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSAL  438 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~  438 (712)
                      |||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.+++.+....+.+..-    
T Consensus       286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~----  361 (538)
T PRK06183        286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT----  361 (538)
T ss_pred             CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC----
Confidence            9999999999999999999999999999999999999999988899999999999999999998887654433110    


Q ss_pred             CCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccccc
Q 005134          439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL  518 (712)
Q Consensus       439 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  518 (712)
                        ++ ...                .++..++..+.              ..|       .+++.+..        ....+
T Consensus       362 --~~-~~~----------------~~R~~~l~~~~--------------~~~-------~~~~~~~~--------~~~~~  393 (538)
T PRK06183        362 --DR-LAA----------------ALRDAVLRALN--------------YLP-------PLKRYVLE--------MRFKP  393 (538)
T ss_pred             --CH-HHH----------------HHHHHHHHhhh--------------cCc-------chhhhhhh--------ccCCC
Confidence              00 000                01111111000              001       01111110        01246


Q ss_pred             CccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHH
Q 005134          519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLA  598 (712)
Q Consensus       519 gy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~  598 (712)
                      ..+|..+++..+..                .+...||.|+|+.++.. +++...++|++-.+  +|+||...........
T Consensus       394 ~~~y~~~~~~~~~~----------------~~~~~~G~~~p~~~~~~-~~~~~~~~d~~~~~--~~~ll~~~~~~~~~~~  454 (538)
T PRK06183        394 MPRLTGGAVVREGE----------------AKHSPVGTLFPQPRVEL-GGGDRGLLDDVLGP--GFAVLGWGCDPLAGLS  454 (538)
T ss_pred             CCcccccccccCcc----------------cCCCCcccCcCCCeeEc-CCCCcccchhccCC--ceEEEEecCCchhcCC
Confidence            67888776542110                01236999999999975 34445788855432  5999986322111111


Q ss_pred             HHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEEe
Q 005134          599 RAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWR  678 (712)
Q Consensus       599 ~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaWr  678 (712)
                      .++.+..+..+  ..++.+.+....      +   ........|.        ++...+.++.....+||||||+||+++
T Consensus       455 ~~~~~~~~~~~--~~~~~~~~~~~~------~---~~~~~~~~d~--------~g~~~~~~~~~~~~~~lvRPD~~v~~~  515 (538)
T PRK06183        455 DEQRARWRALG--ARFVQVVPAVQA------H---TAQDDHDSDV--------DGALRAWLARHGASAVLLRPDRYVAAA  515 (538)
T ss_pred             HHHHHHHHHcC--CeEEEEeccccc------c---cCCCceeecC--------CchHHHHHHhCCCEEEEECCCEEEEEe
Confidence            22223344444  444554322110      0   0011112332        256666677778899999999999998


Q ss_pred             eCCCCCCChHHHHHHHHHHhh
Q 005134          679 SKSGVSGNPKLEMEMAFSAVL  699 (712)
Q Consensus       679 ~~~~~~~~~~~~l~~~~~~~~  699 (712)
                      ..   +. ....|...|...+
T Consensus       516 ~~---~~-~~~~~~~~l~~~~  532 (538)
T PRK06183        516 AD---AQ-TLGALLAALAALL  532 (538)
T ss_pred             eC---HH-HHHHHHHHHHhhc
Confidence            64   22 2344555555444

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-55  Score=491.22  Aligned_cols=341  Identities=24%  Similarity=0.330  Sum_probs=248.4

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~  118 (712)
                      |++..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++|+|+.+ |+.+++...+.+....  .
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~--~   77 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTS--S   77 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeE--E
Confidence            345668999999999999999999999999999999999888899999999999999999 9999998876554321  1


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      .|   ..|..+...... ...... ........++|..++++|.+++.+.|+                   +|+++++|+
T Consensus        78 ~~---~~g~~i~~~~~~-~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~  133 (487)
T PRK07190         78 VW---ANGKFISRQSSW-WEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVV  133 (487)
T ss_pred             Ee---cCCceEeecccc-CccCCc-CCCCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEE
Confidence            11   122222111000 000000 011123568999999999999998887                   999999999


Q ss_pred             EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC-ccccccccCCCce
Q 005134          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGM  277 (712)
Q Consensus       199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~~  277 (712)
                      +++++++++++++.   +|    .+++|+|||+|||++|.||+++|+++.|......+..+..... ++.     ..+..
T Consensus       134 ~l~~~~~~v~v~~~---~g----~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~-----~~~~~  201 (487)
T PRK07190        134 NIELNQAGCLTTLS---NG----ERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFP-----KVPEI  201 (487)
T ss_pred             EEEEcCCeeEEEEC---CC----cEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCC-----CCcce
Confidence            99999999877664   34    2789999999999999999999999988664444433322211 111     11112


Q ss_pred             EEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhhhccccc
Q 005134          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLC  356 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~va~~~~~  356 (712)
                      ..+ ..+.+..++++..  .+.+.+.+..     ....++.+.+.+.+++.+......+ ++...+.|++..+++++|+.
T Consensus       202 ~~~-~~~~g~~~~~p~~--~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~  273 (487)
T PRK07190        202 IVF-QAETSDVAWIPRE--GEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI  273 (487)
T ss_pred             EEE-EcCCCCEEEEECC--CCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc
Confidence            222 2233333333332  2233222221     1245677888888887664332333 34455678899999999972


Q ss_pred             cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (712)
Q Consensus       357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~  427 (712)
                       .|||||+|||||.++|++|||||+||+||+||+|||+.+++|++.+.+|++|+.||+|+++.++..+...
T Consensus       274 -~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~  343 (487)
T PRK07190        274 -QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGEL  343 (487)
T ss_pred             -CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3999999999999999999999999999999999999999999999999999999999999988876543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=1.4e-53  Score=491.11  Aligned_cols=551  Identities=21%  Similarity=0.273  Sum_probs=341.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ..++|||||||||+||++|+.|+++ |++|+||||++.+...+++.+|+++|||+|+++ |+.+++.+.+.+.....  .
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~--~  106 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETA--F  106 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceE--E
Confidence            3479999999999999999999995 999999999999888899999999999999999 99999988776543211  1


Q ss_pred             eeecCC-CCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       120 ~~~~~~-G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      |..... +..+.+....  .+.....++.+...++|..++++|++.+.+.|.                 +++++++++++
T Consensus       107 ~~~~~~~~~~i~r~~~~--~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~-----------------~v~v~~g~~v~  167 (634)
T PRK08294        107 WKPDPADPSTIVRTGRV--QDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPT-----------------RLEPDYGREFV  167 (634)
T ss_pred             EcCCCccccceeccccc--cccCCCCCCCccEeeCHHHHHHHHHHHHHhcCC-----------------ceEEEeCcEEE
Confidence            111100 1111111100  011111223334678999999999999987763                 13789999999


Q ss_pred             EEEEcCC---eEEEEEEecc---CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeec-Cccccccc
Q 005134          199 SVSATDQ---CINVIASFLK---EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLL  271 (712)
Q Consensus       199 ~v~~~~~---~v~v~v~~~~---~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~-~~l~~~~~  271 (712)
                      +++++++   .|++++++.+   +|  ++++++|||||||||++|.||+++|+++.|......+..+.... .++..   
T Consensus       168 ~~~~~~~~~~~V~v~l~~~~~~~~g--~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~---  242 (634)
T PRK08294        168 DLEVDEEGEYPVTVTLRRTDGEHEG--EEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPD---  242 (634)
T ss_pred             EEEECCCCCCCEEEEEEECCCCCCC--ceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCC---
Confidence            9998753   4888887532   23  24689999999999999999999999999877665554433321 12111   


Q ss_pred             cCCCceEEEEeecCCeEEEEEecCCCC-eEEEEEec--CCCC--CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecce
Q 005134          272 NERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPF--YPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWV  345 (712)
Q Consensus       272 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~  345 (712)
                       ... ...+...+.+..++++..  .+ .+.+.+..  .+..  ......+.+.+.+.++++++....++ ++.....|.
T Consensus       243 -~~~-~~~~~~~~~g~~~~~P~~--~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~  318 (634)
T PRK08294        243 -IRL-KCAIQSASEGSILLIPRE--GGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYE  318 (634)
T ss_pred             -cce-EEEEecCCCceEEEEECC--CCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEeccc
Confidence             111 111111233333344432  23 23222221  1111  12245678888888888876433332 233444567


Q ss_pred             echhhhccccc--------cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHH
Q 005134          346 MHAEVAEKFLC--------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA  417 (712)
Q Consensus       346 ~~~~va~~~~~--------~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a  417 (712)
                      +..+++++|..        ..|||||+|||||.++|.+|||||+||+||+||+|||+.+++|.+.+++|++|+.||+|++
T Consensus       319 i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a  398 (634)
T PRK08294        319 VGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIA  398 (634)
T ss_pred             ccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            78899999831        1499999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHH
Q 005134          418 EFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLA  497 (712)
Q Consensus       418 ~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  497 (712)
                      +.+++.+....+.+..-+..       ..            .                                  ...+
T Consensus       399 ~~li~~~~~~~~l~~~~~~~-------~~------------~----------------------------------~~~~  425 (634)
T PRK08294        399 QELIDFDREWSTMMAAPPKE-------GG------------G----------------------------------VDPA  425 (634)
T ss_pred             HHHHHHHHHHHHHhccCCcc-------cc------------c----------------------------------cCHH
Confidence            99998876554443211000       00            0                                  0001


Q ss_pred             HHHHHHHcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecC-CCCcceeeeC
Q 005134          498 KLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVL-STEIISTLDL  576 (712)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~-~~~~~St~Dl  576 (712)
                      .+.+.+.+...    | -..++.+|..|.++......            .....-.||.|+|.+.+.+. ++..+-+.|+
T Consensus       426 ~~~~~~~~~~~----~-~sG~~~~Y~~s~l~~~~~~~------------~~~~~~~~G~r~~~~~v~~~~d~~~~~l~~~  488 (634)
T PRK08294        426 ELQDYFVKHGR----F-TAGTATHYAPSLLTGEATHQ------------DLATGFPIGKRFHSAPVIRLADAKPVHLGHA  488 (634)
T ss_pred             HHHHHHHHhhh----h-hcccCcccCCccccCCCCch------------hhccCCCCceeCCCCceeeccCCCchhHhhh
Confidence            12222211110    1 12478889988887432110            01123569999999998752 4445556665


Q ss_pred             CCCCcceEEEEEcCCccc-hHHHHHHHHhhhhc------------------CCceEEEEEcCCC-Ccchhhhhhc-----
Q 005134          577 VSGDKVEFLLIIAPVEES-YHLARAALKVAEDF------------------KVPTKVCVLWPAG-TTNEVEFRSA-----  631 (712)
Q Consensus       577 ~~~~~~~f~Ll~~~~~~~-~~~~~aa~~~~~~~------------------g~~~~~~~~~~~~-~~~~~~~~~~-----  631 (712)
                      +..+ +.|.||++.+... ..........++.+                  +.-+.+..|..+. .+.|-.+-+.     
T Consensus       489 ~~~~-g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~  567 (634)
T PRK08294        489 ATAD-GRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAVIDVRAIFQQPHRELDLEDVPALLLPR  567 (634)
T ss_pred             cccC-CCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcEEEEEEEecCCCCccchhhCcHhhCCc
Confidence            5332 2599998875321 11222222223222                  1225555553221 1111111011     


Q ss_pred             cccCCCCcccchhhhcccCCccchhhhhcccCC--ceEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhh
Q 005134          632 AELAPWKNYIDVEEVKRSSDSLSWWRICKMTDM--GAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVL  699 (712)
Q Consensus       632 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--gavLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~  699 (712)
                      ....-|.+|..+. ++++ ...+-++.+||..+  +.|+|||||||+|-..  .  |....|..-++.++
T Consensus       568 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~gi~~~~g~~vvvRPD~~v~~~~~--l--~~~~~l~~yf~~~~  631 (634)
T PRK08294        568 KGRFGLTDYEKVF-CADL-SGADIFDLRGIDRDRGAVVVVRPDQYVANVLP--L--DAHAELAAFFAGFL  631 (634)
T ss_pred             ccccCccchhhee-cCCC-chhhHHHhhCCCCCceeEEEECCCCceEEEec--C--ccHHHHHHHHHHhc
Confidence            1111133432211 1110 01234466899875  5578899999999875  2  33566777776654

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-54  Score=485.63  Aligned_cols=332  Identities=25%  Similarity=0.361  Sum_probs=243.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+. ..+|+..++++++++|+++ |+.+++.+.+.+... ..+  
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~-~~~--   77 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQV-TGF--   77 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCcccc-cee--
Confidence            45899999999999999999999999999999998765 4678999999999999999 999999876544321 001  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                          .   ...++..   ++.. ..+ ....+.|..|+++|.+.+++.|+                   +++++++++++
T Consensus        78 ----~---~~~~~~~---~~~~-~~~-~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v  126 (488)
T PRK06834         78 ----A---ATRLDIS---DFPT-RHN-YGLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGF  126 (488)
T ss_pred             ----e---eEecccc---cCCC-CCC-ccccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence                0   0001110   0000 011 23568899999999999998876                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      ++++++|++++.   +|+    +++|||||+|||++|.||+++|+++.|..+.+.++...+...+.        +. ...
T Consensus       127 ~~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~--------~~-~~~  190 (488)
T PRK06834        127 AQDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE--------PE-WGV  190 (488)
T ss_pred             EEcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC--------CC-cce
Confidence            999999887653   342    68999999999999999999999999887766555554432211        00 011


Q ss_pred             EeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCc
Q 005134          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (712)
Q Consensus       281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gR  360 (712)
                      .+.+.....+.+.. ..+.+.+.+.. +........+.+.+.+.+++.++......+......|....+++++|+  +||
T Consensus       191 ~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~--~gR  266 (488)
T PRK06834        191 HRDALGIHAFGRLE-DEGPVRVMVTE-KQVGATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYR--DGR  266 (488)
T ss_pred             eeCCCceEEEeccC-CCCeEEEEEec-CCCCCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceeccccc--CCc
Confidence            12222221222221 12344333221 111222345667777888888775433333334456777888999999  599


Q ss_pred             EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (712)
Q Consensus       361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~  428 (712)
                      |||+|||||.|+|++|||||+||+||.||+|||+.+++|++.+.+|++|+.||+|+++.++..+....
T Consensus       267 V~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~  334 (488)
T PRK06834        267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQV  334 (488)
T ss_pred             EEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988775444

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=1.1e-44  Score=392.10  Aligned_cols=350  Identities=27%  Similarity=0.440  Sum_probs=253.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+.+.+.+.+...+....+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~   79 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG   79 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence            48999999999999999999999999999999999999999999999999999999 99999998875543322222222


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                       ..+.............+.....+.....+.|..|+++|.+.+++.|+                   +++++++++++++
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~  139 (356)
T PF01494_consen   80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ  139 (356)
T ss_dssp             -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred             -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence             11211111111111111111233445678899999999999999887                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccccccc--ccEEEEEeecCccccccccCCCceEEE
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      +++++++.+.+..+|+  .++++||+||||||++|.||+++++.+.+....  ..++.+.+.. .+..+.   .+  .++
T Consensus       140 d~~~~~~~~~~~~~g~--~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~  211 (356)
T PF01494_consen  140 DDDGVTVVVRDGEDGE--EETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPW---ED--HCF  211 (356)
T ss_dssp             ETTEEEEEEEETCTCE--EEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTT---SC--EEE
T ss_pred             cccccccccccccCCc--eeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccc---cc--ccc
Confidence            9999998888655553  468999999999999999999999876554422  3444444444 333221   11  445


Q ss_pred             EeecCCeE-EEEEecC-CCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhcccccc
Q 005134          281 IFNTEAIG-VLVAHDL-KEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       281 ~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~  357 (712)
                      +..+...+ ++++... ....+++.+++.... ........+.+.+.+...++......++.....|.+...++++|.. 
T Consensus       212 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  290 (356)
T PF01494_consen  212 IYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVK-  290 (356)
T ss_dssp             EEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEE-
T ss_pred             cccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            55544444 3455543 223455555554432 2222334556666666766655455566777788888888899984 


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHH
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~  423 (712)
                       |||+|+|||||.|+|++|||+|+||+||.+|+++|+.+++|.+.+.+|+.|+++|+++++.+++.
T Consensus       291 -grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  291 -GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             -TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence             99999999999999999999999999999999999999999888999999999999999988764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=3.2e-42  Score=377.80  Aligned_cols=341  Identities=24%  Similarity=0.327  Sum_probs=253.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~-~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .+||+||||||+||++|+.|+++|++|+||||. ......+++..|+++++++|+++ |+.+.+...+.+.....   ..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~---~~   77 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVM---VV   77 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeE---EE
Confidence            489999999999999999999999999999998 45567779999999999999999 99788888665442211   11


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                       ...+.....++....      ..+.....++|..|...|.+++.+.+.                  ++++++++|+.++
T Consensus        78 -~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~~~  132 (387)
T COG0654          78 -DDGGRRLLIFDAAEL------GRGALGYVVPRSDLLNALLEAARALPN------------------VTLRFGAEVEAVE  132 (387)
T ss_pred             -ecCCceeEEeccccc------CCCcceEEeEhHHHHHHHHHHHhhCCC------------------cEEEcCceEEEEE
Confidence             112221111221111      113345789999999999999998763                  5999999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccC-CCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lg-i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      ++++.|++++..  +|+    +++|||||||||.+|.||++++ ....+..+.+.++...+...       .......+.
T Consensus       133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~  199 (387)
T COG0654         133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE  199 (387)
T ss_pred             EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence            999999877763  452    8999999999999999999999 55555567777776665542       123345555


Q ss_pred             EeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCcceEE-Eeecceechhhhcccccc
Q 005134          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVI-DIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~-~~~~w~~~~~va~~~~~~  357 (712)
                      .+.+.....+++........+|..+ ....+....++.+.+.+.+.+.++..  ...+... ....|++....+++|.. 
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~-  277 (387)
T COG0654         200 RFTHAGPFALLPLPDNRSSVVWSLP-PGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRR-  277 (387)
T ss_pred             EecCCCceEEEecCCCceeEEEECC-hhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheec-
Confidence            5666654445554422233333332 12233455677777777888888876  3323332 23356778899999994 


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~  428 (712)
                       +||+|+|||||.|+|++|||+|+||+||.+|+|+|++..++..++.+|+.|+++|++.+..++..+....
T Consensus       278 -~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~  347 (387)
T COG0654         278 -GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALG  347 (387)
T ss_pred             -CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence             9999999999999999999999999999999999999987433389999999999999999998876433

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=5.2e-42  Score=378.13  Aligned_cols=341  Identities=18%  Similarity=0.201  Sum_probs=232.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHhHHHHHHhhhcHHHHHHhcC-CCccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDL  114 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~~~  114 (712)
                      .++||+||||||+||++|+.|+++|++|+||||++.+..      ..++..|+++++++|+++ |+++++.+.+ .+...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~   80 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHG   80 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccE
Confidence            358999999999999999999999999999999987543      237778999999999999 9999987653 34322


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                      .   .+... .  ....+.... ...   ..+...+.+.|..|+++|.+.+.+.+.                  ++++++
T Consensus        81 ~---~~~~~-~--~~~~~~~~~-~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~i~~~  132 (400)
T PRK08013         81 M---EVWDK-D--SFGRIAFDD-QSM---GYSHLGHIIENSVIHYALWQKAQQSSD------------------ITLLAP  132 (400)
T ss_pred             E---EEEeC-C--CCceEEEcc-ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEEcC
Confidence            1   11111 1  011111100 000   112223578999999999999887532                  499999


Q ss_pred             cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (712)
Q Consensus       195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~  274 (712)
                      +++++++++++++++++.   +|+    +++|||||||||++|.||+++++++.+..+....+...+....       ..
T Consensus       133 ~~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~  198 (400)
T PRK08013        133 AELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-------PH  198 (400)
T ss_pred             CeeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-------CC
Confidence            999999999999887764   443    6899999999999999999999988776655554444443211       11


Q ss_pred             CceEEEEeecCCeEEEEEecCCC-CeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhh
Q 005134          275 PGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVA  351 (712)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va  351 (712)
                      ....+..+.++....+++.+.+. ..+++..+  +.. +.....+.+.+.+.+...++......++.+ ...|+....++
T Consensus       199 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~  276 (400)
T PRK08013        199 DAVARQVFHGDGILAFLPLSDPHLCSIVWSLS--PEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYA  276 (400)
T ss_pred             CCEEEEEEcCCCCEEEEECCCCCeEEEEEEcC--HHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeec
Confidence            22334444444444444443221 12333322  111 111233455555555544432222333332 22455666788


Q ss_pred             ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cCCC--chhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIA--PASILNTYETERKPIAEFNTALSVQNF  428 (712)
Q Consensus       352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a--~~~lL~sY~~eRrp~a~~~~~~s~~~~  428 (712)
                      ++|+  .|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++ ++.+  ...+|++|+++|++++..++..+....
T Consensus       277 ~~~~--~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~  354 (400)
T PRK08013        277 RQFA--AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFR  354 (400)
T ss_pred             cccc--CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998  5999999999999999999999999999999999999876 3433  235899999999999988887654433


Q ss_pred             H
Q 005134          429 R  429 (712)
Q Consensus       429 ~  429 (712)
                      +
T Consensus       355 ~  355 (400)
T PRK08013        355 D  355 (400)
T ss_pred             H
Confidence            3

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=2.3e-40  Score=364.17  Aligned_cols=339  Identities=20%  Similarity=0.245  Sum_probs=228.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ++||+||||||+||++|+.|+++|++|+||||++.+  ...+++..++++++++|+++ |+.+++.+.+.+....   .+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~---~~   77 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGI---EL   77 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcE---EE
Confidence            589999999999999999999999999999999864  34567888999999999999 9999998877654322   12


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ..  .|+ ...++....      ..+.....++|..|.+.|++.+.+.|+                   +++++++++++
T Consensus        78 ~~--~g~-~~~~~~~~~------~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i  129 (392)
T PRK08243         78 RF--DGR-RHRIDLTEL------TGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL  129 (392)
T ss_pred             EE--CCE-EEEeccccc------cCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence            11  232 222222110      111223456788999999988877776                   99999999999


Q ss_pred             EE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc--ccc-ccEEEEEeecCccccccccCCCc
Q 005134          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG  276 (712)
Q Consensus       201 ~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~-~~~~~~~~~~~~l~~~~~~~~~~  276 (712)
                      ++ ++++++|++.  .+|+  +.+++|||||||||++|.||++++......  ..+ ..+..+..   +..    .... 
T Consensus       130 ~~~~~~~~~V~~~--~~G~--~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~-  197 (392)
T PRK08243        130 HDFDSDRPYVTYE--KDGE--EHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILA---EAP----PVSD-  197 (392)
T ss_pred             EecCCCceEEEEE--cCCe--EEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeC---CCC----CCCC-
Confidence            87 6777777663  2453  458999999999999999999997643110  000 11111110   100    1111 


Q ss_pred             eEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCC----CcceEEEeecceechhhhc
Q 005134          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL----SDIDVIDIKPWVMHAEVAE  352 (712)
Q Consensus       277 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~----~~~~i~~~~~w~~~~~va~  352 (712)
                      ..++...+....++...+.+...+++.++   .....+.++++...+.+++.++...    ....+.....|++...+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (392)
T PRK08243        198 ELIYANHERGFALCSMRSPTRSRYYLQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAE  274 (392)
T ss_pred             ceEEeeCCCceEEEecCCCCcEEEEEEec---CCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceec
Confidence            12222222222222222211113333333   1223345566666666666655321    1112222334556667788


Q ss_pred             cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      +|.  .|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++. .+++|++|+++|+|++..+++.+....+.+
T Consensus       275 ~~~--~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~-~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~  350 (392)
T PRK08243        275 PMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG-DTALLDAYSATALRRVWKAERFSWWMTSML  350 (392)
T ss_pred             cce--eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887  4999999999999999999999999999999999999988763 689999999999999999888876655443

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=2.2e-40  Score=368.85  Aligned_cols=343  Identities=22%  Similarity=0.266  Sum_probs=235.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCceeecCHhHHHHHHhhhcHHHHHHh
Q 005134           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER  107 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar----~Gi~v~lvEr~~~~~~------------~~ra~~i~~rtmeilr~l~Gl~d~l~~  107 (712)
                      +||+||||||+||++|+.|++    +|++|+||||++.+..            .+|+..|+++++++|+++ |+++++.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~   79 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS   79 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence            689999999999999999999    8999999999654432            358999999999999999 99999977


Q ss_pred             cC-CCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcccccccccc
Q 005134          108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL  186 (712)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~  186 (712)
                      .. .+...   +.+. ...+.....++..  .     ..+...+.++|..|+..|.+.+.+.+.                
T Consensus        80 ~~~~~~~~---~~~~-~~~~~~~~~~~~~--~-----~~~~~~~~i~~~~l~~~L~~~~~~~~~----------------  132 (437)
T TIGR01989        80 DRIQPFGR---MQVW-DGCSLALIRFDRD--N-----GKEDMACIIENDNIQNSLYNRLQEYNG----------------  132 (437)
T ss_pred             hcCCceee---EEEe-cCCCCceEEeecC--C-----CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence            54 33322   1111 1112111111110  0     011224578999999999999887651                


Q ss_pred             ccceEEeCcEEEEEEEc-------CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEE
Q 005134          187 QGREILMGHECVSVSAT-------DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV  259 (712)
Q Consensus       187 ~~~~v~~g~~v~~v~~~-------~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~  259 (712)
                      .+++++++++|++++++       +++|++++.   +|+    +++|||||||||++|.||+++|+++.|..+.+..+..
T Consensus       133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~  205 (437)
T TIGR01989       133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA  205 (437)
T ss_pred             CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence            01499999999999752       456666653   453    7999999999999999999999999988766665554


Q ss_pred             EeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhC---------
Q 005134          260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG---------  330 (712)
Q Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g---------  330 (712)
                      .+....      ...+...+..|.+++...+++...+...+++..+.. ........+++.+.+.+.+.++         
T Consensus       206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  278 (437)
T TIGR01989       206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS  278 (437)
T ss_pred             EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            443211      112234455566665555555543323344433210 0111223455666666655441         


Q ss_pred             ---------------CCC--------Cc---ceEE--EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhH
Q 005134          331 ---------------WEL--------SD---IDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG  382 (712)
Q Consensus       331 ---------------~~~--------~~---~~i~--~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~g  382 (712)
                                     ...        ..   .++.  ....|++....+++|.  .+||+|+|||||.++|.+|||||+|
T Consensus       279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~l~GDAAH~~~P~~GqG~n~~  356 (437)
T TIGR01989       279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYV--TKRVALVGDAAHRVHPLAGQGVNLG  356 (437)
T ss_pred             cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhcc--CCCEEEEchhhcCCCCChhhhHHHH
Confidence                           100        00   1111  1235666777889998  4999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCC---chhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134          383 VQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNFRA  430 (712)
Q Consensus       383 i~DA~~LawkLa~vl~g~a---~~~lL~sY~~eRrp~a~~~~~~s~~~~~~  430 (712)
                      |+||.+|+|+|++++++..   .+.+|++|+.+|+++++.++..+....+.
T Consensus       357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l  407 (437)
T TIGR01989       357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKL  407 (437)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875432   35799999999999999998877654443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=1.8e-40  Score=366.65  Aligned_cols=342  Identities=20%  Similarity=0.251  Sum_probs=232.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCC----CCCCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAF----STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~-~~~----~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~~  115 (712)
                      ..+||+||||||+||++|+.|+++|++|+|||++ +..    ...+++..|+++++++|+++ |+++++.+. +.+... 
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~-   80 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIA-   80 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccE-
Confidence            4689999999999999999999999999999997 322    12468899999999999999 999999864 344321 


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                        +..... .+  +....... .+.   ..+.....+.+..|++.|++.+.+.+.                  +++++++
T Consensus        81 --~~~~~~-~~--~~~~~~~~-~~~---~~~~~g~~~~~~~l~~~L~~~~~~~~~------------------v~v~~~~  133 (405)
T PRK08850         81 --MEVWEQ-DS--FARIEFDA-ESM---AQPDLGHIVENRVIQLALLEQVQKQDN------------------VTLLMPA  133 (405)
T ss_pred             --EEEEeC-CC--CceEEEec-ccc---CCCccEEEEEHHHHHHHHHHHHhcCCC------------------eEEEcCC
Confidence              111111 11  11111110 000   111123456788899999998876532                  4999999


Q ss_pred             EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      ++++++++++++++++.   +|+    +++||+||||||++|.||++++++..+..+.+..+...+....       ...
T Consensus       134 ~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~  199 (405)
T PRK08850        134 RCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-------PHN  199 (405)
T ss_pred             eeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-------CCC
Confidence            99999999888877764   453    6899999999999999999999987765554444444443221       122


Q ss_pred             ceEEEEeecCCeEEEEEecCCC-CeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcc
Q 005134          276 GMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK  353 (712)
Q Consensus       276 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~  353 (712)
                      ...+.+|.++....+++...+. ..+++..+... .+.....+.+.+.+.+.+.++.....+++.. ...|++....+++
T Consensus       200 ~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~  278 (405)
T PRK08850        200 SVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLR-AEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARD  278 (405)
T ss_pred             CEEEEEEcCCCceEEEECCCCCeEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeeccc
Confidence            3445556665554555543221 12333322110 1112234445555556665543322333322 2245566677888


Q ss_pred             ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CC--CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~--a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      |.  +|||+|+|||||.|+|++|||||+||+||.+|+|+|+.+.+ +.  +.+.+|++|+.+|++++..++..+....+
T Consensus       279 ~~--~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~  355 (405)
T PRK08850        279 FV--RERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD  355 (405)
T ss_pred             cc--cCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            88  59999999999999999999999999999999999998773 32  24689999999999999998887754443

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=1.1e-39  Score=358.52  Aligned_cols=347  Identities=19%  Similarity=0.210  Sum_probs=228.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ++.++||+||||||+||++|+.|+++|++|+||||++.+...+++..|+++++++|+++ |+.+.+.+.+.....  .+.
T Consensus         2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~--~~~   78 (388)
T PRK07045          2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRRD--AMR   78 (388)
T ss_pred             CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhccccccc--ceE
Confidence            35668999999999999999999999999999999999887778888999999999999 999999876543211  111


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      .  ...|+.+...+.....     ... ....++|..|+++|++++...+.                  +++++++++++
T Consensus        79 ~--~~~g~~~~~~~~~~~~-----~~g-~~~~i~r~~l~~~L~~~~~~~~g------------------v~i~~~~~v~~  132 (388)
T PRK07045         79 L--YHDKELIASLDYRSAS-----ALG-YFILIPCEQLRRLLLAKLDGLPN------------------VRLRFETSIER  132 (388)
T ss_pred             E--ecCCcEEEEecCCccc-----cCC-ceEEccHHHHHHHHHHHHhcCCC------------------eeEEeCCEEEE
Confidence            1  1245544433321110     001 12457899999999999865432                  49999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcc-cCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL-VGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~-lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      ++++++++.+.+.+. +|+    ++++|+||||||++|.||++ ++++..+..+........+....   ..    +...
T Consensus       133 i~~~~~~~~~~v~~~-~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~  200 (388)
T PRK07045        133 IERDADGTVTSVTLS-DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTD---SV----RECN  200 (388)
T ss_pred             EEECCCCcEEEEEeC-CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccC---Cc----cccc
Confidence            999887754445432 443    68999999999999999996 46554333222222222221111   00    1111


Q ss_pred             EEEeec-CCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-ceEE-Eee---cceechhhhc
Q 005134          279 FFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEVAE  352 (712)
Q Consensus       279 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-~~i~-~~~---~w~~~~~va~  352 (712)
                      ..++.+ ....++++.......+++.++.........+.+.+.+.+.+.+.++....+ ++.. ...   .+++....++
T Consensus       201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (388)
T PRK07045        201 RLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLD  280 (388)
T ss_pred             eEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccccc
Confidence            122233 222333443322223443333211111122334556666666665433211 1111 111   2344556678


Q ss_pred             cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      +|.  .|||+|+|||||.|+|++|||+|+||+||++|+|+|+.++++. ..+++|++|+++|+|++..++..+....+
T Consensus       281 ~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~  356 (388)
T PRK07045        281 RYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALAT  356 (388)
T ss_pred             ccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence            887  4999999999999999999999999999999999999887654 45789999999999999988887654433

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.7e-39  Score=354.94  Aligned_cols=331  Identities=17%  Similarity=0.215  Sum_probs=231.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~----~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +||+||||||+|+++|+.|+++|++|+|||+.+..    ...+++..++++++++|+++ |+++.+.+.+.+....   .
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---~   77 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDI---Y   77 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEE---E
Confidence            68999999999999999999999999999998532    23478999999999999999 9999987766554322   1


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                       ..+..|.....++..        ..+...+.+.|..|++.|++++.+.+.                  +++++++++++
T Consensus        78 -~~~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~  130 (374)
T PRK06617         78 -VVDNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE  130 (374)
T ss_pred             -EEECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence             222334433332211        111124678999999999999988763                  48999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +.+++++|++++.   ++     +++||+||||||++|.||+.++++..+..+ +..+.+.....       .......+
T Consensus       131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~  194 (374)
T PRK06617        131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM  194 (374)
T ss_pred             EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence            9999999877663   32     689999999999999999999887654443 44444333211       11222334


Q ss_pred             EEeecCCeEEEEEecCCC-CeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcccccc
Q 005134          280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~~  357 (712)
                      ..|.+.+...+++...+. ..++|..+ ..........+.+.+.+++...++.....+.+. ....|++....+++|.  
T Consensus       195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~--  271 (374)
T PRK06617        195 EHFLPLGPFALLPLKDQYASSVIWSTS-SDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYF--  271 (374)
T ss_pred             EEecCCCCEEEeECCCCCeEEEEEeCC-HHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeecccee--
Confidence            455555555555554221 12233322 000011123344555556666555433333332 2456777777889998  


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      +|||+|+|||||.|+|++|||+|+||+||.+|++.|.       ...+|++|+++|++....++..+....+.+
T Consensus       272 ~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~-------~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f  338 (374)
T PRK06617        272 HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVS-------NNGTLQEYQKLRQEDNFIMYKLTDELNNIF  338 (374)
T ss_pred             cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHc-------CcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999883       136899999999999999988776544433

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=1.2e-39  Score=357.39  Aligned_cols=335  Identities=18%  Similarity=0.241  Sum_probs=231.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcccc
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~----~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~~  115 (712)
                      .+||+||||||+||++|+.|++.|++|+|||+.+...  .    ..++..|+++++++|++| |+++.+.+. ..+....
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~   81 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL   81 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence            4899999999999999999999999999999886321  1    235678999999999999 999998763 3333211


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                      .  .+... ...  ..+..   .++   ..+...+.+.+..|...|++++.+.+.                  +++++++
T Consensus        82 ~--~~~~~-~~~--~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------i~i~~~~  132 (384)
T PRK08849         82 E--TWEHP-ECR--TRFHS---DEL---NLDQLGYIVENRLIQLGLWQQFAQYPN------------------LTLMCPE  132 (384)
T ss_pred             E--EEeCC-Cce--EEecc---ccc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------eEEECCC
Confidence            1  11110 011  01110   000   001112346667889999988876542                  4999999


Q ss_pred             EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      ++++++++++++++++.   +|+    +++||+||||||++|.||+++++...+..+.+..+.+.+...       ....
T Consensus       133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~  198 (384)
T PRK08849        133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ  198 (384)
T ss_pred             ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence            99999999999887775   453    789999999999999999999988776655555444433321       1122


Q ss_pred             ceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccc
Q 005134          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF  354 (712)
Q Consensus       276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~  354 (712)
                      ...+..+.+.+...+++.......++|..+  +.. ......+++...+.+.+.++.....+++.....|++....+++|
T Consensus       199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  276 (384)
T PRK08849        199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDS--PKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQY  276 (384)
T ss_pred             CEEEEEeCCCCCEEEeEcCCCceEEEEECC--HHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchh
Confidence            334444555444444555433333444321  110 11123456666777777666554455555556677777789999


Q ss_pred             cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (712)
Q Consensus       355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~  427 (712)
                      .  .|||+|+|||||.|+|++|||+|+||+||.+|+..|..  ++...+.+|+.|+.+|+++...++..+...
T Consensus       277 ~--~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~  345 (384)
T PRK08849        277 V--KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLF  345 (384)
T ss_pred             c--cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8  59999999999999999999999999999999998864  344568999999999999998877655433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=2.8e-39  Score=358.64  Aligned_cols=347  Identities=21%  Similarity=0.240  Sum_probs=232.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      .++||+||||||+||++|+.|+++|++|+||||++.+..  .+++..++++++++|+++ |+.+++...+.+...   +.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~   92 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQ---IR   92 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccE---EE
Confidence            358999999999999999999999999999999987643  467889999999999999 999998876655421   11


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      + .+..+.....+...   +..  .... .+...+..|.+.|++++.+.+.                  +++++++++++
T Consensus        93 ~-~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~~  147 (415)
T PRK07364         93 L-SDADYPGVVKFQPT---DLG--TEAL-GYVGEHQVLLEALQEFLQSCPN------------------ITWLCPAEVVS  147 (415)
T ss_pred             E-EeCCCCceeeeccc---cCC--CCcc-EEEEecHHHHHHHHHHHhcCCC------------------cEEEcCCeeEE
Confidence            1 12222222111110   000  0011 1222334688888888877532                  49999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      ++++++++++++..  ++.  +.+++||+||||||.+|.||+.+++...+..+++..+...+.....       .....+
T Consensus       148 v~~~~~~~~v~~~~--~~~--~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  216 (415)
T PRK07364        148 VEYQQDAATVTLEI--EGK--QQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAP-------HNDIAY  216 (415)
T ss_pred             EEecCCeeEEEEcc--CCc--ceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCC-------CCCEEE
Confidence            99999988877752  222  2479999999999999999999998887776666655554433210       111122


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-EeecceechhhhccccccC
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCCY  358 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~~~  358 (712)
                      ..+.+....++++.+.+...+++..+.. ........+.+...+.+++.++.....++.. ....|++....+++|.  .
T Consensus       217 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  293 (415)
T PRK07364        217 ERFWPSGPFAILPLPGNRCQIVWTAPHA-QAKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV--Q  293 (415)
T ss_pred             EEecCCCCeEEeECCCCCEEEEEECCHH-HHHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--C
Confidence            2222333334445443222333332210 0011223454555566665554332333332 2234666666788887  5


Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CC--CchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~--a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      |||+|+|||||.++|++|||||+||+||++|+|+|...++ +.  ....+|+.|+++|++++..++..+....+.+
T Consensus       294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  369 (415)
T PRK07364        294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF  369 (415)
T ss_pred             CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763 22  2358999999999999998887776544433

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=3e-39  Score=357.05  Aligned_cols=343  Identities=17%  Similarity=0.207  Sum_probs=232.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCceeecCHhHHHHHHhhhcHHHHHHhc-CCCcc
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD  113 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--------~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~  113 (712)
                      .+||+||||||+||++|+.|+++|++|+||||.+..        ...+++..++++++++|+++ |+++.+.+. ..+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS   80 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence            479999999999999999999999999999998731        23467888999999999999 999998764 33332


Q ss_pred             ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (712)
Q Consensus       114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  193 (712)
                      .   +.. .+..+.....++.   .+.   ..+.....+.+..|.+.|.+.+.+.++                   ++++
T Consensus        81 ~---~~~-~~~~~~~~~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~  131 (405)
T PRK05714         81 E---MQV-WDGSGTGQIHFSA---ASV---HAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA  131 (405)
T ss_pred             e---EEE-EcCCCCceEEecc---ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence            1   111 1222221111110   000   112223467888999999999887766                   9999


Q ss_pred             CcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccC
Q 005134          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (712)
Q Consensus       194 g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~  273 (712)
                      ++++++++++++++++++.   +|+    +++||+||+|||++|.||+.++++..+..+....+...+...       ..
T Consensus       132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~  197 (405)
T PRK05714        132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP  197 (405)
T ss_pred             CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence            9999999999998877654   442    689999999999999999999987765554444433333211       11


Q ss_pred             CCceEEEEeecCCeEEEEEecCCC-CeEEE-EEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechh
Q 005134          274 RPGMLFFIFNTEAIGVLVAHDLKE-GEFIL-QVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAE  349 (712)
Q Consensus       274 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~  349 (712)
                      .....+..+.+.....+++..... ..|.. .....+.. ......+.+.+.+.+.+.++....++ .......|++...
T Consensus       198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  277 (405)
T PRK05714        198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR  277 (405)
T ss_pred             CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee
Confidence            223344445665555555543221 22321 11111111 11122344555555555544322222 1122234666677


Q ss_pred             hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cC--CCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KD--IAPASILNTYETERKPIAEFNTALSVQ  426 (712)
Q Consensus       350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g--~a~~~lL~sY~~eRrp~a~~~~~~s~~  426 (712)
                      .+++|.  +|||+|+|||||.|+|++|||+|+||+||.+|+|+|+... .|  .+.+.+|+.|+++|++++..++..+..
T Consensus       278 ~~~~~~--~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~  355 (405)
T PRK05714        278 HAKRYV--EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEG  355 (405)
T ss_pred             ehhhhc--cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788998  5999999999999999999999999999999999998765 34  245689999999999999999988876


Q ss_pred             HHHHh
Q 005134          427 NFRAA  431 (712)
Q Consensus       427 ~~~~~  431 (712)
                      +.+.+
T Consensus       356 ~~~~~  360 (405)
T PRK05714        356 FERLF  360 (405)
T ss_pred             HHHHH
Confidence            55544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=4.4e-39  Score=353.84  Aligned_cols=341  Identities=20%  Similarity=0.304  Sum_probs=236.2

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~  118 (712)
                      |++..+||+||||||+||++|+.|+++|++|+||||++.+. .+++..++++++++|+++ |+++.+...+.+...   .
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~---~   77 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERL-GLWARLAPHAAPLQS---M   77 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHh-CchhhhHhhcceeeE---E
Confidence            45677999999999999999999999999999999998664 367888999999999999 999999876655432   1


Q ss_pred             EeeecCCCCeeee--ecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134          119 IYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (712)
Q Consensus       119 ~~~~~~~G~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~  196 (712)
                      .+. +..|..+..  ... ...+.   ......+.+++..|++.|.+.+.+.+.                  +. +++++
T Consensus        78 ~~~-~~~g~~~~~~~~~~-~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~------------------~~-~~~~~  133 (388)
T PRK07494         78 RIV-DATGRLIRAPEVRF-RAAEI---GEDAFGYNIPNWLLNRALEARVAELPN------------------IT-RFGDE  133 (388)
T ss_pred             EEE-eCCCCCCCCceEEE-cHHhc---CCCccEEEeEhHHHHHHHHHHHhcCCC------------------cE-EECCe
Confidence            121 223322210  000 00000   011113568899999999999888764                  24 88999


Q ss_pred             EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCc
Q 005134          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG  276 (712)
Q Consensus       197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  276 (712)
                      |++++++++++++++.   +|+    +++||+||+|||.+|.||+.++++..+..+.+..+.+.+... .      ....
T Consensus       134 v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~------~~~~  199 (388)
T PRK07494        134 AESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-R------PHQN  199 (388)
T ss_pred             eEEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-C------CCCC
Confidence            9999999999877653   342    689999999999999999999998776655555554444321 1      1122


Q ss_pred             eEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcccc
Q 005134          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFL  355 (712)
Q Consensus       277 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~  355 (712)
                      ..+.++.+.+..++++.+.+...+++..+.. ........+.+.+.+.+.+.++.....++.. ....|++....+++|.
T Consensus       200 ~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  278 (388)
T PRK07494        200 VSTEFHTEGGPFTQVPLPGRRSSLVWVVRPA-EAERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFA  278 (388)
T ss_pred             EEEEEeCCCCcEEEEECCCCcEEEEEECCHH-HHHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhc
Confidence            3334444554444455432222233322211 0011223455666666655544322223222 2345778888888998


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                        .+||+|+|||||.++|++|||||+||+||.+|+|+|.....+.+...+|++|+++|+|....++..+.
T Consensus       279 --~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~  346 (388)
T PRK07494        279 --AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVD  346 (388)
T ss_pred             --cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              49999999999999999999999999999999999998655666789999999999999877765443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.1e-38  Score=352.39  Aligned_cols=341  Identities=21%  Similarity=0.275  Sum_probs=230.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~--~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +||+||||||+||++|+.|+++|  ++|+||||++...  ..+++..|+++++++|+++ |+.+.+...+.+...   +.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~---~~   77 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITD---MV   77 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccE---EE
Confidence            79999999999999999999996  9999999998643  3579999999999999999 999999887765532   22


Q ss_pred             eeecCCCCeeee--ecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134          120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (712)
Q Consensus       120 ~~~~~~G~~l~~--~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v  197 (712)
                      +.....+.....  .....  ... ...+ ..+.+.|..|++.|.+.+.+.|+                   +++++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v  134 (403)
T PRK07333         78 ITDSRTSDPVRPVFLTFEG--EVE-PGEP-FAHMVENRVLINALRKRAEALGI-------------------DLREATSV  134 (403)
T ss_pred             EEeCCCCCCCccceEEecc--ccc-CCCc-cEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence            222111111110  01000  000 0111 12467899999999999988876                   99999999


Q ss_pred             EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (712)
Q Consensus       198 ~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (712)
                      ++++++++++++++.   +|+    ++++|+||+|||.+|.+|+.+|+...+..+....+.+......      . ....
T Consensus       135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~  200 (403)
T PRK07333        135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER------P-HGGR  200 (403)
T ss_pred             EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC------C-CCCE
Confidence            999999888776653   342    6899999999999999999999876544433333322222111      0 1122


Q ss_pred             EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcccc
Q 005134          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFL  355 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~~~  355 (712)
                      ....+.++...++++...+...+++..+  ... ......+.+...+.+++.++.....+.... ...|+.....+++|.
T Consensus       201 ~~~~~~~~g~~~~~Pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (403)
T PRK07333        201 AEEHFLPAGPFAILPLKGNRSSLVWTER--TADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFV  278 (403)
T ss_pred             EEEEeCCCCceEEeECCCCCeEEEEECC--HHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhcc
Confidence            2333445544455555432222332211  100 011122333444455555554333333322 224666667888898


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC---CCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g---~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                        .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++.   .+.+.+|++|+++|++++..++..+....+
T Consensus       279 --~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~  353 (403)
T PRK07333        279 --APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR  353 (403)
T ss_pred             --CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              599999999999999999999999999999999999988742   346899999999999999988876654443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=1.7e-38  Score=349.54  Aligned_cols=335  Identities=16%  Similarity=0.222  Sum_probs=229.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCceeecCHhHHHHHHhhhcHHHHHHhc-CCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-----~~ra~~i~~rtmeilr~l~Gl~d~l~~~-~~~~~~  114 (712)
                      ...+||+||||||+|+++|+.|+++|++|+||||++.+..     ..++..++++++++|+++ |+++.+.+. ..+.. 
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~-   81 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYR-   81 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCccc-
Confidence            4568999999999999999999999999999999875432     246678999999999999 999998764 33322 


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                        .+.......+..+ .++..   .+   ..+...+.+++..|.+.|.+.+++.|+                   +++++
T Consensus        82 --~~~~~~~~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~  133 (392)
T PRK08773         82 --RMRVWDAGGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP  133 (392)
T ss_pred             --EEEEEeCCCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence              1111111111111 11110   00   111123567889999999999988776                   99999


Q ss_pred             cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (712)
Q Consensus       195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~  274 (712)
                      +++++++++++++++++.   +|+    ++++|+||+|||.+|.+|+.+|++..+..+....+...+.. +.      ..
T Consensus       134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~~------~~  199 (392)
T PRK08773        134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDT-EH------PH  199 (392)
T ss_pred             CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEc-cC------CC
Confidence            999999998888876653   342    68999999999999999999998766544333333332222 11      11


Q ss_pred             CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceechhhhcc
Q 005134          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK  353 (712)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~~~va~~  353 (712)
                      +...+..+.++....+++.+.+...++|.++.. ..+....++.+.+.+.+.+.++.....++... ...|++...++++
T Consensus       200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (392)
T PRK08773        200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDA-EAERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ  278 (392)
T ss_pred             CCEEEEEeCCCCcEEEEECCCCceEEEEECCHH-HHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence            223444455555555555543333344443311 11112234555555555555543333343322 2346667778899


Q ss_pred             ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHH
Q 005134          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTA  422 (712)
Q Consensus       354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~  422 (712)
                      |.  .|||+|+|||||.|+|++|||+|+||+||.+|+++|..+++   +.+.+.+|++|+++|++....+..
T Consensus       279 ~~--~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~  348 (392)
T PRK08773        279 YV--SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAY  348 (392)
T ss_pred             hc--CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            98  59999999999999999999999999999999999998763   445678999999999999764443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=2.5e-38  Score=347.11  Aligned_cols=339  Identities=22%  Similarity=0.297  Sum_probs=231.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~----~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ||+||||||+||++|+.|+++| ++|+||||.+.+...    +++..++++++++|+++ |+.+++...+.+...   +.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~---~~   76 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILD---IH   76 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccce---EE
Confidence            7999999999999999999999 999999999887554    57899999999999999 999998877655432   11


Q ss_pred             eeec-CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEE
Q 005134          120 YCTS-VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC  197 (712)
Q Consensus       120 ~~~~-~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v  197 (712)
                      +... ..+...  +.   ..++   ..+...+.+.|..|++.|.+.+.+. |+                   ++++++++
T Consensus        77 ~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v  129 (382)
T TIGR01984        77 VSDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARY  129 (382)
T ss_pred             EEcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeE
Confidence            1110 011111  10   0011   1122235688999999999999874 65                   99999999


Q ss_pred             EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (712)
Q Consensus       198 ~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (712)
                      ++++++++++++++.   +|+    +++||+||+|||.+|.||+.++++.....+.+..+...+....      . ....
T Consensus       130 ~~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~  195 (382)
T TIGR01984       130 KEIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ------P-HQGC  195 (382)
T ss_pred             EEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC------C-CCCE
Confidence            999998888877653   442    6899999999999999999998876544222222222222111      0 1112


Q ss_pred             EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhcccc
Q 005134          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFL  355 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~~~~  355 (712)
                      .+..+.++....+++.+.+ ..+.+.+...... +...+.+.+.+.+.+.+.++.....+.. .....|.+....+++|.
T Consensus       196 ~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (382)
T TIGR01984       196 AFERFTPHGPLALLPLKDN-YRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHV  274 (382)
T ss_pred             EEEeeCCCCCeEECcCCCC-CCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhee
Confidence            2233344433344444322 1333322211110 1112345555555566655543222222 12345667777788887


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                        .|||+|+|||||.|+|++|||||+||+||.+|+|+|+.+..+...+.+|+.|+++|+++...+++.+....+.+
T Consensus       275 --~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~  348 (382)
T TIGR01984       275 --HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLF  348 (382)
T ss_pred             --cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              49999999999999999999999999999999999998765555689999999999999999888776544433

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-38  Score=345.70  Aligned_cols=343  Identities=17%  Similarity=0.192  Sum_probs=234.5

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~G----i~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~  112 (712)
                      |..+++||+||||||+|+++|+.|+++|    ++|+|+|+.+.+  ...+|+..++++++++|+++ |+++.   .+.+.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~---~~~~~   82 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPA---DATPI   82 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchh---cCCcc
Confidence            4456799999999999999999999997    469999998644  34568999999999999999 99875   23332


Q ss_pred             cccceeEeee-cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceE
Q 005134          113 DLWRKFIYCT-SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       113 ~~~~~~~~~~-~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                      ..   ..... ...|......     .++   ..|...+.++|..|++.|.+++.+.|+                   ++
T Consensus        83 ~~---~~~~~~~~~g~~~~~~-----~~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~  132 (398)
T PRK06996         83 EH---IHVSQRGHFGRTLIDR-----DDH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW  132 (398)
T ss_pred             cE---EEEecCCCCceEEecc-----ccc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence            21   11111 1112221111     111   122234578899999999999998876                   89


Q ss_pred             EeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC-CchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (712)
Q Consensus       192 ~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~-~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  270 (712)
                      +++++++++++++++|++++.   ++++ +++++|||||+|||. +|.+|+.+++...+..+.+..+...+....     
T Consensus       133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~-----  203 (398)
T PRK06996        133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA-----  203 (398)
T ss_pred             EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC-----
Confidence            999999999999999888764   2221 247999999999997 588899998887766555544444333211     


Q ss_pred             ccCCCceEEEEeecCCeEEEEEecCCCCe-EEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEE-eecceec
Q 005134          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMH  347 (712)
Q Consensus       271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~-~~~w~~~  347 (712)
                        ..+...+..+.+.+...+++.+.+... +.+.....+.. .....++.+...+.+.+.++.....+.... ...|+..
T Consensus       204 --~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  281 (398)
T PRK06996        204 --PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG  281 (398)
T ss_pred             --CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence              112233334445444444444322211 33222111111 112345556666777777765444443322 2346667


Q ss_pred             hhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (712)
Q Consensus       348 ~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~  427 (712)
                      ...+++|.  .|||+|+|||||.++|++|||||+||+||.+|+|+|+.  .+ ..+.+|++|+++|+++...++..+...
T Consensus       282 ~~~~~~~~--~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~-~~~~~L~~Y~~~R~~~~~~~~~~s~~l  356 (398)
T PRK06996        282 LNAARTLV--NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HG-ATPLALATFAARRALDRRVTIGATDLL  356 (398)
T ss_pred             ccccccee--cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888  59999999999999999999999999999999999975  33 356789999999999999998887765


Q ss_pred             HHHh
Q 005134          428 FRAA  431 (712)
Q Consensus       428 ~~~~  431 (712)
                      .+.+
T Consensus       357 ~~~~  360 (398)
T PRK06996        357 PRLF  360 (398)
T ss_pred             HHHH
Confidence            5443

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=9.8e-38  Score=343.48  Aligned_cols=336  Identities=19%  Similarity=0.238  Sum_probs=227.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC------CCCceeecCHhHHHHHHhhhcHHHHHHhcC-CCc
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS------THPQAHFINNRYALVFRKLDGLAEEIERSQ-PPV  112 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~------~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~  112 (712)
                      ...++||+||||||+||++|+.|+++|++|+|||+.+...      ...++..++++++++|+++ |+++.+.... .+.
T Consensus         2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~   80 (391)
T PRK08020          2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPY   80 (391)
T ss_pred             CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCccc
Confidence            4567999999999999999999999999999999986432      2346788999999999999 9999887632 232


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                      ..   ........+....  +.   .+.   ..+...+.++|..|++.|.+++.+. |+                   ++
T Consensus        81 ~~---~~~~~~~~~~~~~--~~---~~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i  130 (391)
T PRK08020         81 RR---LETWEWETAHVVF--DA---AEL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TL  130 (391)
T ss_pred             ce---EEEEeCCCCeEEe--cc---ccc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EE
Confidence            11   1111111221111  10   000   1122335688999999999998776 54                   89


Q ss_pred             EeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccc
Q 005134          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (712)
Q Consensus       192 ~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~  271 (712)
                      ++++++++++++++++++++.   +|+    +++||+||+|||.+|.||+.++++..+..+.+..+.+.+....      
T Consensus       131 ~~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~------  197 (391)
T PRK08020        131 RCPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN------  197 (391)
T ss_pred             EcCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC------
Confidence            999999999988888776653   342    6899999999999999999999887665555444443333211      


Q ss_pred             cCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC--CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechh
Q 005134          272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAE  349 (712)
Q Consensus       272 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~  349 (712)
                       ......+..+.+.....+++...+....++.   ..+.  ......+.+.+.+.+.+.++.....+.......|++...
T Consensus       198 -~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~  273 (391)
T PRK08020        198 -PPGDSTWQQFTPSGPRAFLPLFDNWASLVWY---DSPARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRR  273 (391)
T ss_pred             -CCCCEEEEEEcCCCCEEEeECCCCcEEEEEE---CCHHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeeccee
Confidence             1122333334444444444443221112221   1111  111233455555555555543333444444556777777


Q ss_pred             hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                      .+++|.  .+||+|+|||||.++|++|||+|+||+||.+|+|+|+...+   ++..+.+|++|+.+|++....++..+.
T Consensus       274 ~~~~~~--~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~  350 (391)
T PRK08020        274 HALQYV--QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMD  350 (391)
T ss_pred             ehhhhc--cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788998  49999999999999999999999999999999999998753   334578999999999998776555443

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=3.9e-37  Score=337.76  Aligned_cols=338  Identities=20%  Similarity=0.247  Sum_probs=216.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .+||+||||||+||++|+.|+++|++|+||||++.+.  ...++..++++++++|+++ ||.+++...+.+.....   +
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---~   77 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTE---I   77 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceE---E
Confidence            4899999999999999999999999999999998642  3457788999999999999 99999988776543221   1


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ..  .+ ....++....      ........+.|..|.+.|.+++.+.|+                   .++++++++.+
T Consensus        78 ~~--~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~  129 (390)
T TIGR02360        78 AF--DG-QRFRIDLKAL------TGGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL  129 (390)
T ss_pred             ee--CC-EEEEEecccc------CCCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence            11  12 2222221110      011112234678899999999887776                   88999999888


Q ss_pred             EE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc--ccc-ccEEEEEeecCccccccccCCCc
Q 005134          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG  276 (712)
Q Consensus       201 ~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~-~~~~~~~~~~~~l~~~~~~~~~~  276 (712)
                      .+ +++.+.|++.  .+|+  ..++++|+||||||++|.||++++......  ..+ ..+..+....+       .....
T Consensus       130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~  198 (390)
T TIGR02360       130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP-------PVSHE  198 (390)
T ss_pred             EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC-------CCCCc
Confidence            65 5666667664  2443  357999999999999999999986432100  001 11111111100       00111


Q ss_pred             eEEEEeecCCeEEEEEec-CCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEE----eecceechhhh
Q 005134          277 MLFFIFNTEAIGVLVAHD-LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVA  351 (712)
Q Consensus       277 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~----~~~w~~~~~va  351 (712)
                      . .+ ..++....+++.. .....|.+.++   .......++.+.+.+.+++.+.....+.....    ....++....+
T Consensus       199 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (390)
T TIGR02360       199 L-IY-SNHERGFALCSMRSATRSRYYVQVP---LTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVC  273 (390)
T ss_pred             e-EE-EeCCCceEEEeccCCCcceEEEEcC---CCCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhcc
Confidence            1 22 1222222222322 11123444332   22223445545455555555432211111101    11113345567


Q ss_pred             ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      ++|.  .|||+|+|||||.|+|++|||||+||+||.+|+++|...... ..+.+|+.|+++|++++..+++.|.......
T Consensus       274 ~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~-~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~  350 (390)
T TIGR02360       274 EPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE-GSSAGIEGYSARALARVWKAERFSWWMTSLL  350 (390)
T ss_pred             ccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7786  599999999999999999999999999999999999876432 3578999999999999999998887654443

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-37  Score=337.84  Aligned_cols=336  Identities=16%  Similarity=0.189  Sum_probs=219.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      ++|+||||||+||++|+.|+++|++|+||||++.....+++..++++++++|+++ |+.+++.+.+.+...   +.+ ..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~---~~~-~~   75 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEH---VRS-VD   75 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccc---eEE-Ec
Confidence            4899999999999999999999999999999988877778888999999999999 999999887765532   222 22


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..|..+..++...   +.. ..+.....++|..|.+.|++.+.. ++                   +++++++|++++++
T Consensus        76 ~~g~~~~~~~~~~---~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~  131 (391)
T PRK07588         76 PTGRRKADLNVDS---FRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH  131 (391)
T ss_pred             CCCCEEEEecHHH---ccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence            3455544332211   110 111223578899999999886643 44                   99999999999999


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (712)
                      +++|++++.   +|+    ++++|+||||||++|.||+.+.........+.......+....   .. .........+..
T Consensus       132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~~~~~~~~~  200 (391)
T PRK07588        132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDG---YR-PRDERTYVLYNE  200 (391)
T ss_pred             CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCC---CC-CCCCceEEEEeC
Confidence            999877664   453    5789999999999999999763221111122222211111111   10 111111222223


Q ss_pred             cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCC---cc-eEE-Eeecc---eechhhhcccc
Q 005134          284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS---DI-DVI-DIKPW---VMHAEVAEKFL  355 (712)
Q Consensus       284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~---~~-~i~-~~~~w---~~~~~va~~~~  355 (712)
                      ++...+.++.+  ++.+.+.+....+. ....++.+...+.+++.++....   .+ +.+ ....+   ......+++|.
T Consensus       201 ~g~~~~~~p~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  277 (391)
T PRK07588        201 VGRQVARVALR--GDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS  277 (391)
T ss_pred             CCCEEEEEecC--CCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc
Confidence            43333334433  23333322222221 22334555556666665542111   11 111 11111   12334566776


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ  426 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~  426 (712)
                        .|||+|+|||||.|+|+.|||+|+||+||.+|+|+|+...  ...+.+|+.|+++|+|+...++..+..
T Consensus       278 --~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~  344 (391)
T PRK07588        278 --RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAK  344 (391)
T ss_pred             --cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence              5999999999999999999999999999999999998632  235789999999999999988877653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=340.28  Aligned_cols=341  Identities=18%  Similarity=0.259  Sum_probs=231.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCceeecCHhHHHHHHhhhcHHHHHHhcC-CCcccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLW  115 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-----~~ra~~i~~rtmeilr~l~Gl~d~l~~~~-~~~~~~  115 (712)
                      +++||+||||||+||++|+.|++.|++|+||||++.+..     .+++..++++++++|+++ |+.+++.... .+... 
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~-   81 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYD-   81 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceE-
Confidence            358999999999999999999999999999999988654     456789999999999999 9998875433 23221 


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                        +.+.....+    .+...   .+. ...|...+.+.|..|++.|.+++++.|.                  ++++ ++
T Consensus        82 --~~~~~~~~~----~~~~~---~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~------------------v~~~-~~  132 (388)
T PRK07608         82 --MRVFGDAHA----RLHFS---AYQ-AGVPQLAWIVESSLIERALWAALRFQPN------------------LTWF-PA  132 (388)
T ss_pred             --EEEEECCCc----eeEee---ccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCC------------------cEEE-cc
Confidence              111111111    11110   000 0123334568899999999999988762                  3777 99


Q ss_pred             EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      ++++++++++++++++.   +|+    +++||+||+|||++|.||+.+++...........+.+.+....      . ..
T Consensus       133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~  198 (388)
T PRK07608        133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER------P-HR  198 (388)
T ss_pred             eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC------C-CC
Confidence            99999988888776654   342    6899999999999999999999876654444434444444321      1 11


Q ss_pred             ceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhcc
Q 005134          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK  353 (712)
Q Consensus       276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~  353 (712)
                      ...+.++.++...++++.+.  +.+.+........ ......+++.+.+.++.........++.. ....|++....++.
T Consensus       199 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (388)
T PRK07608        199 GTAYQWFRDDGILALLPLPD--GHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR  276 (388)
T ss_pred             CEEEEEecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence            22333345554444555443  3433322211110 11122355666666666543222233322 22346666667788


Q ss_pred             ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH--cCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL--KDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl--~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      |.  .+||+|+|||||.|+|++|||+|+||+||.+|+|+|....  .+.+..++|++|+++|+++.+.++..+....+.+
T Consensus       277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~  354 (388)
T PRK07608        277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLF  354 (388)
T ss_pred             hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87  4999999999999999999999999999999999998764  2444568999999999999998887776544433

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.7e-37  Score=342.37  Aligned_cols=340  Identities=16%  Similarity=0.165  Sum_probs=216.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      .+|+||||||+||++|+.|+++|++|+||||.+.+...+++..|+++++++|+++ |+.+++...+....   .+.+...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~---~~~~~~g   78 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPK---ALYLMDG   78 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcc---eEEEecC
Confidence            6899999999999999999999999999999998888899999999999999999 99999987665442   1222211


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..+......+...   ............+.|..|+++|++.+.+.+.                  ++++++++|++++++
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------i~v~~~~~v~~~~~~  137 (400)
T PRK06475         79 RKARPLLAMQLGD---LARKRWHHPYIVCHRADLQSALLDACRNNPG------------------IEIKLGAEMTSQRQT  137 (400)
T ss_pred             CCcceEEEecchh---hhhhcCCCCceeECHHHHHHHHHHHHHhcCC------------------cEEEECCEEEEEecC
Confidence            1121111111100   0000011223468999999999999876421                  389999999999999


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEE--EeecCcccccccc--CCCceEE
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HFLSKDLGDYLLN--ERPGMLF  279 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~--~~~~~~l~~~~~~--~~~~~~~  279 (712)
                      ++++++++...+++    .++++|+||||||++|.||++++....   .+...+.+  .+....+......  .......
T Consensus       138 ~~~v~v~~~~~~~~----~~~~adlvIgADG~~S~vR~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (400)
T PRK06475        138 GNSITATIIRTNSV----ETVSAAYLIACDGVWSMLRAKAGFSKA---RFSGHIAWRTTLAADALPASFLSAMPEHKAVS  210 (400)
T ss_pred             CCceEEEEEeCCCC----cEEecCEEEECCCccHhHHhhcCCCCC---CcCCceEEEEEeehhhcchhhhhhcccCCceE
Confidence            89988887643332    368999999999999999999865321   12122111  1111111110000  1122223


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCC----CHHHHHHHHHHHhCCCCC--c-ceE-EEeecceechhhh
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELS--D-IDV-IDIKPWVMHAEVA  351 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~i~~~~g~~~~--~-~~i-~~~~~w~~~~~va  351 (712)
                      .++.++...++++...+ ..+.+.. +.........+    +.+.+.+++.   ++...  . ++. .....|++.....
T Consensus       211 ~~~g~~~~~~~~p~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~  285 (400)
T PRK06475        211 AWLGNKAHFIAYPVKGG-KFFNFVA-ITGGENPGEVWSKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMAD  285 (400)
T ss_pred             EEEcCCCEEEEEEccCC-cEEEEEE-EEcCCCCcccCCCCCCHHHHHHHhc---CCChHHHHHHhcCCceeECcCcccCC
Confidence            33455544444444322 2232221 11111111112    2222222221   12110  0 111 1223455554445


Q ss_pred             ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                      .+|.+ .|||+|+|||||.|+|+.|||+|+||+||..|+++|..    .....+|+.|+++|+|+++.++..+.
T Consensus       286 ~~~~~-~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~  354 (400)
T PRK06475        286 AQFVG-PDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQ  354 (400)
T ss_pred             Cccee-cCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55532 59999999999999999999999999999999999963    23468999999999999999988774

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=3e-37  Score=338.67  Aligned_cols=340  Identities=21%  Similarity=0.268  Sum_probs=231.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CceeecCHhHHHHHHhhhcHHHHHHh-cCCCcccccee
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF  118 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~-----~ra~~i~~rtmeilr~l~Gl~d~l~~-~~~~~~~~~~~  118 (712)
                      ||+||||||+||++|+.|+++|++|+||||++.+...     +++..++++++++|+++ |+.+++.+ .+.+...   +
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~   76 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRD---I   76 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceE---E
Confidence            7999999999999999999999999999999986433     57899999999999999 99999987 5554432   2


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      .+. ...+.....+..  . +   ...+...+.++|..|.+.|++.+.+.|.                  ++++++++|+
T Consensus        77 ~~~-~~~~~~~~~~~~--~-~---~~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------~~v~~~~~v~  131 (385)
T TIGR01988        77 HVS-DGGSFGALHFDA--D-E---IGLEALGYVVENRVLQQALWERLQEYPN------------------VTLLCPARVV  131 (385)
T ss_pred             EEE-eCCCCceEEech--h-h---cCCCccEEEEEcHHHHHHHHHHHHhCCC------------------cEEecCCeEE
Confidence            111 111211111110  0 0   0112224578899999999999988772                  3999999999


Q ss_pred             EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      +++++++++++++.   +|+    ++++|+||+|||.+|.+|++++++..........+...+.....       .....
T Consensus       132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  197 (385)
T TIGR01988       132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP-------HQGTA  197 (385)
T ss_pred             EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC-------CCCEE
Confidence            99998888776553   453    58999999999999999999987765443333333333322110       11222


Q ss_pred             EEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhccccc
Q 005134          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC  356 (712)
Q Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~~~~~  356 (712)
                      +..+.++...++++.+.  +.+.+.+...+.. .....++.+.+.+.+++.++.....+.. .....|++....+++|. 
T Consensus       198 ~~~~~~~g~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (385)
T TIGR01988       198 WERFTPTGPLALLPLPD--NRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV-  274 (385)
T ss_pred             EEEecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence            22333444334444433  3333332221111 1122345555666666655432222222 22345666666777887 


Q ss_pred             cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-C--CCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                       .+||+|+|||||.|+|++|||||+||+||.+|+|+|+..++ +  ...+.+|+.|+++|+++++.++..+....+.+
T Consensus       275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~  351 (385)
T TIGR01988       275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLF  351 (385)
T ss_pred             -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             59999999999999999999999999999999999998764 2  23579999999999999999998876555443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=342.20  Aligned_cols=340  Identities=17%  Similarity=0.214  Sum_probs=225.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCceeecCHhHHHHHHhhhcHHHHHHhcCC-Ccccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLW  115 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-----~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~-~~~~~  115 (712)
                      +++||+||||||+||++|+.|+++|++|+|+||.+.+.     ..+++..++++++++|+++ |+.+++...+. +..  
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~--   78 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLR--   78 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccc--
Confidence            46999999999999999999999999999999998742     2356677899999999999 99998876542 221  


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeC
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                       .....   .+.....+.......    ......+.++|..|.+.|++.+.+ .|+                   +++++
T Consensus        79 -~~~~~---~~~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~  131 (392)
T PRK09126         79 -DAKVL---NGRSPFALTFDARGR----GADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTG  131 (392)
T ss_pred             -eEEEE---cCCCCceeEeehhhc----CCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcC
Confidence             11111   111111111100000    001112457888999999988764 344                   99999


Q ss_pred             cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCC
Q 005134          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (712)
Q Consensus       195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~  274 (712)
                      +++++++++++++++++.   +|+    +++||+||+|||.+|.||+.+|++..........+...+...       ...
T Consensus       132 ~~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~  197 (392)
T PRK09126        132 TRVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE-------LPH  197 (392)
T ss_pred             CeEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc-------CCC
Confidence            999999998888776653   443    689999999999999999999877643332222222222111       011


Q ss_pred             CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecceechhhhc
Q 005134          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAE  352 (712)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w~~~~~va~  352 (712)
                      ....+.++.++...++++.+.  +.+.+.+.+.+.. ......+++.+.+.+.+.++.....+.. .....|+.....++
T Consensus       198 ~~~~~~~~~~~~~~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (392)
T PRK09126        198 HHTAWEWFGYGQTLALLPLNG--HLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAH  275 (392)
T ss_pred             CCEEEEEecCCCCeEEeECCC--CCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHH
Confidence            223334445444444455442  3444433322211 1112345555555555544432222221 12234566667778


Q ss_pred             cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      +|.  .+||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++   +...+++|+.|+++|++++..++..+....+
T Consensus       276 ~~~--~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~  353 (392)
T PRK09126        276 RFV--AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA  353 (392)
T ss_pred             HHh--hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887  49999999999999999999999999999999999999874   3345789999999999999998887765444

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=336.53  Aligned_cols=345  Identities=20%  Similarity=0.267  Sum_probs=230.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC-Ccccccee
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWRKF  118 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~-~~~~~~~~  118 (712)
                      ..+++||+||||||+||++|+.|+++|++|+||||++.....+++..+++.++++|+++ |+++.+.+... +..   .+
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~---~~   78 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVR---TL   78 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceee---eE
Confidence            35679999999999999999999999999999999987655678899999999999999 99998876432 221   11


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      .+.  ..|..+...+....   .  ........++|..+.+.|.+.+.+.+.                  ++++++++++
T Consensus        79 ~~~--~~~~~~~~~~~~~~---~--~~~~~~~~v~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~  133 (407)
T PRK06185         79 RFE--IGGRTVTLADFSRL---P--TPYPYIAMMPQWDFLDFLAEEASAYPN------------------FTLRMGAEVT  133 (407)
T ss_pred             EEE--ECCeEEEecchhhc---C--CCCCcEEEeehHHHHHHHHHHHhhCCC------------------cEEEeCCEEE
Confidence            111  12322222221110   0  001123467899999999998876522                  3999999999


Q ss_pred             EEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCce
Q 005134          199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (712)
Q Consensus       199 ~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (712)
                      +++.+++.+. +++.. .+|+   .+++||+||+|||.+|.||+.+|++.....+.+..+.  +.... .    ...+..
T Consensus       134 ~~~~~~~~v~~v~~~~-~~g~---~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~-~----~~~~~~  202 (407)
T PRK06185        134 GLIEEGGRVTGVRART-PDGP---GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPR-E----PDDPES  202 (407)
T ss_pred             EEEEeCCEEEEEEEEc-CCCc---EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEE--EecCC-C----CCCCcc
Confidence            9998887764 44442 2332   4799999999999999999999988765554444332  22211 1    111123


Q ss_pred             EEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCC---CCcce-EEEeecceechhhhc
Q 005134          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE  352 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~---~~~~~-i~~~~~w~~~~~va~  352 (712)
                      .+..+.++...++++.+   +.|.+........ ......+.+.+.+.+.+.++..   ...++ +.....|++....++
T Consensus       203 ~~~~~~~~g~~~llP~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~  279 (407)
T PRK06185        203 LMGRFGPGQGLIMIDRG---DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR  279 (407)
T ss_pred             cceEecCCcEEEEEcCC---CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence            34455665544455443   3444332221111 1122233444555554443321   11111 112234556667788


Q ss_pred             cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      +|.  .+||+|+|||||.++|++|||||+||+||.+|+|+|+..+++. .++.+|+.|+++|++....++..+....+
T Consensus       280 ~~~--~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~  355 (407)
T PRK06185        280 RWH--RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQR  355 (407)
T ss_pred             ccc--CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            887  4999999999999999999999999999999999999887543 45689999999999999988876654443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=6.8e-37  Score=337.21  Aligned_cols=344  Identities=19%  Similarity=0.259  Sum_probs=226.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC-C----CCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK-A----FSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~-~----~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~  112 (712)
                      |+.+||+||||||+||++|+.|+++   |++|+||||.. .    +...+++..++++++++|+++ |+.+++.+.+.+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~   79 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPI   79 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCc
Confidence            3568999999999999999999999   99999999963 2    122357899999999999999 9999998877554


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL  192 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  192 (712)
                      ...   .+. . .+. ....... ..++   ..+.....+.|..|.+.|.+.+.+.+.                  ++++
T Consensus        80 ~~~---~~~-~-~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~g------------------~~~~  131 (395)
T PRK05732         80 THI---HVS-D-RGH-AGFVRLD-AEDY---GVPALGYVVELHDVGQRLFALLDKAPG------------------VTLH  131 (395)
T ss_pred             cEE---EEe-c-CCC-CceEEee-hhhc---CCCccEEEEEhHHHHHHHHHHHhcCCC------------------cEEE
Confidence            321   111 1 111 1101000 0011   112223457888999999998876431                  3899


Q ss_pred             eCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccccc
Q 005134          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN  272 (712)
Q Consensus       193 ~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~  272 (712)
                      +++++++++++++++++++.   +|.    ++++|+||+|||.+|.||+.+++...........+...+.....      
T Consensus       132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~------  198 (395)
T PRK05732        132 CPARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA------  198 (395)
T ss_pred             cCCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC------
Confidence            99999999988888876654   342    68999999999999999999988765443322222222221110      


Q ss_pred             CCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhh
Q 005134          273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEV  350 (712)
Q Consensus       273 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~v  350 (712)
                       .....+..+.+.....+++.+.  +.+.+...+.... .....++.+...+.+.+.+++....+ ++.....|.+....
T Consensus       199 -~~~~~~~~~~~~g~~~~~p~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (395)
T PRK05732        199 -HQGRAFERFTEHGPLALLPMSD--GRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVT  275 (395)
T ss_pred             -CCCEEEEeecCCCCEEEeECCC--CCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccc
Confidence             1112222233333334444432  3433322211111 11223455555556666555432222 12223345555566


Q ss_pred             hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC---chhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQN  427 (712)
Q Consensus       351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a---~~~lL~sY~~eRrp~a~~~~~~s~~~  427 (712)
                      +++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.++++..   .+.+|++|+++|++++..++..+...
T Consensus       276 ~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~  353 (395)
T PRK05732        276 AAQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGL  353 (395)
T ss_pred             hhhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777  49999999999999999999999999999999999998875432   35899999999999999888877654


Q ss_pred             HHHh
Q 005134          428 FRAA  431 (712)
Q Consensus       428 ~~~~  431 (712)
                      .+.+
T Consensus       354 ~~~~  357 (395)
T PRK05732        354 VRLF  357 (395)
T ss_pred             HHHH
Confidence            4433

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-36  Score=334.84  Aligned_cols=342  Identities=20%  Similarity=0.235  Sum_probs=219.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+||++|+.|+++|++|+||||++.+.+.+.+..++++++++|+++ |+.+++...+.+...+   .+ .+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~---~~-~~   75 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTREL---AY-FN   75 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcce---EE-Ec
Confidence            4899999999999999999999999999999998887888899999999999999 9999998877655322   22 22


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                      ..|+.+.........     ....+.+.+.|..|+++|++.+.+ .|.                  ++|+++++|+++++
T Consensus        76 ~~g~~~~~~~~~~~~-----~~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~  132 (413)
T PRK07538         76 RHGQRIWSEPRGLAA-----GYDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ  132 (413)
T ss_pred             CCCCEEeeccCCccc-----CCCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence            345544321110000     011223468899999999999865 354                  37999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (712)
                      +++++.+.+.+..+|  ..++++||+||||||++|.||++++.... ...+...+...... ....+.    ....+.+.
T Consensus       133 ~~~~~~~~~~~~~~g--~~~~~~adlvIgADG~~S~vR~~l~~~~~-~~~~~g~~~~~~~~-~~~~~~----~~~~~~~~  204 (413)
T PRK07538        133 DADVTVVFLGDRAGG--DLVSVRGDVLIGADGIHSAVRAQLYPDEG-PPRWNGVMMWRGVT-EAPPFL----TGRSMVMA  204 (413)
T ss_pred             cCCceEEEEeccCCC--ccceEEeeEEEECCCCCHHHhhhhcCCCC-CCcccceEEEEEee-cCcccc----CCCcEEEE
Confidence            888877777643233  23589999999999999999999864321 22222222211111 111111    11111222


Q ss_pred             e-cCCeEEEEEecCC-----CCeEEEEEecCCC---CCCCCCCCH-HHHHHHHHHHhCCCCC--cc-eE----EEeecce
Q 005134          283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPP---QQNLEDFSP-EICEKLIFKLVGWELS--DI-DV----IDIKPWV  345 (712)
Q Consensus       283 ~-~~~~g~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~-e~~~~~i~~~~g~~~~--~~-~i----~~~~~w~  345 (712)
                      + ++...++++....     ...+.|.+++..+   ......++. ....+++..+-++...  ++ ++    .....|+
T Consensus       205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  284 (413)
T PRK07538        205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP  284 (413)
T ss_pred             cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence            2 1222223332211     0133343333222   112223322 2222333332232211  00 11    1122344


Q ss_pred             ech-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHH
Q 005134          346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (712)
Q Consensus       346 ~~~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s  424 (712)
                      +.. ...++|.  .|||+|+|||||.|+|++|||+|+||+||.+|+++|+..  + ..+.+|+.|+++|+|++..++..+
T Consensus       285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~-~~~~aL~~Ye~~R~~~~~~~~~~s  359 (413)
T PRK07538        285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--G-DPEAALAAYEAERRPATAQIVLAN  359 (413)
T ss_pred             ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--C-CHHHHHHHHHHHhhHHHHHHHHHh
Confidence            332 3456777  499999999999999999999999999999999999863  2 367899999999999999888766


Q ss_pred             HH
Q 005134          425 VQ  426 (712)
Q Consensus       425 ~~  426 (712)
                      ..
T Consensus       360 ~~  361 (413)
T PRK07538        360 RL  361 (413)
T ss_pred             hh
Confidence            53

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=330.14  Aligned_cols=328  Identities=19%  Similarity=0.236  Sum_probs=213.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      ++|+||||||+||++|+.|+++|++|+||||++.+...++++.++++++++|+.+ |+.+.+...+.+...   +.+ .+
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~---~~~-~~   75 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILST---MNL-LD   75 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCcccc---eeE-Ec
Confidence            4799999999999999999999999999999999888889999999999999999 999998877655432   112 22


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..|+.+.....      .   .......++|..|.++|.+.+..                     .+|++++++++++++
T Consensus        76 ~~g~~~~~~~~------~---~~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~  125 (373)
T PRK06753         76 DKGTLLNKVKL------K---SNTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE  125 (373)
T ss_pred             CCCCEEeeccc------c---cCCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence            34554332211      0   01123578999999999987643                     279999999999999


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (712)
                      ++++++++.   +|+    ++++|+||||||.+|.||+.++....  ..+.....+....... ..  .. ......++.
T Consensus       126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~--~~~~g~~~~~~~~~~~-~~--~~-~~~~~~~~~  192 (373)
T PRK06753        126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSK--VRYQGYTCFRGLIDDI-DL--KL-PDCAKEYWG  192 (373)
T ss_pred             CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCC--ceEcceEEEEEEeccc-cc--cC-ccceEEEEc
Confidence            888887754   453    57999999999999999999875432  1111111111111111 00  01 111222333


Q ss_pred             cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHH-------HhCCCCCcceEEEeeccee-chhhhcccc
Q 005134          284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFK-------LVGWELSDIDVIDIKPWVM-HAEVAEKFL  355 (712)
Q Consensus       284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~-------~~g~~~~~~~i~~~~~w~~-~~~va~~~~  355 (712)
                      ++...++++...+...|.+.++...........+.+.+.+.+..       ++... ....+.   .|.. .....++|.
T Consensus       193 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~  268 (373)
T PRK06753        193 TKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQ-SETGIL---HHDIYDLKPLKSFV  268 (373)
T ss_pred             CCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhC-Ccccce---eecccccccccccc
Confidence            33333333333221123332221111112223333333333221       11100 000011   1111 122346776


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                        .|||+|+|||||.|+|+.|||+|+||+||.+|++.|..    ...+++|+.|+++|++++..+++.+....+
T Consensus       269 --~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  336 (373)
T PRK06753        269 --YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGK  336 (373)
T ss_pred             --CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Confidence              49999999999999999999999999999999999953    245889999999999999999988865443

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=7.5e-36  Score=329.09  Aligned_cols=342  Identities=20%  Similarity=0.221  Sum_probs=218.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      +..+|+||||||+||++|+.|+++|++|+||||++.+...++++.|+++++++|+++ |+.+.+.+.+.+...   +.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~~   78 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTMM   78 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEEE
Confidence            458999999999999999999999999999999998888889999999999999999 999998876654432   2233


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                      ....|..+..++...  .+.. ..+.....+.|..|.+.|.+.+.+.+.                  +++++++++++++
T Consensus        79 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~i~  137 (396)
T PRK08163         79 DAVDAEEVVRIPTGQ--AFRA-RFGNPYAVIHRADIHLSLLEAVLDHPL------------------VEFRTSTHVVGIE  137 (396)
T ss_pred             eCCCCCEEEEeccch--hHHH-hcCCcEEEEEHHHHHHHHHHHHHhcCC------------------cEEEeCCEEEEEe
Confidence            333455554432211  0100 011223467899999999999887652                  4899999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCC--cccccccccEEEEEeecCccccccccCCCceE
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GID--LVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      ++++++++++.   +|+    ++++|+||+|||.+|.+|+.+ +.+  +.|...+    ...+...++.....   ....
T Consensus       138 ~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~----~~~~~~~~~~~~~~---~~~~  203 (396)
T PRK08163        138 QDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVY----RAVIDVDDMPEDLR---INAP  203 (396)
T ss_pred             cCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCCCCCccccEEE----EEEEeHHHCcchhc---cCcc
Confidence            98888776653   342    689999999999999999987 432  1221111    11111112211110   1111


Q ss_pred             EEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CC--CCCCCHHHHHHHHHHHhCCCCCcceEE----Eeeccee-chhh
Q 005134          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QN--LEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVM-HAEV  350 (712)
Q Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~e~~~~~i~~~~g~~~~~~~i~----~~~~w~~-~~~v  350 (712)
                      ..+..++...++.+...+ ..+.+.+.+.... ..  ....+.+.+   .+.+-++.+.-.+++    ....|.. ....
T Consensus       204 ~~~~g~~~~~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (396)
T PRK08163        204 VLWAGPHCHLVHYPLRGG-EQYNLVVTFHSREQEEWGVKDGSKEEV---LSYFEGIHPRPRQMLDKPTSWKRWATADREP  279 (396)
T ss_pred             EEEEcCCceEEEEEecCC-eEEEEEEEECCCCCcccccCCCCHHHH---HHHHcCCChHHHHHHhcCCceeEccccCCCc
Confidence            222333333333333211 1222222221111 11  011122222   222222211110111    1111222 2234


Q ss_pred             hccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (712)
Q Consensus       351 a~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~  430 (712)
                      .++|.  .|||+|+|||||.|+|++|||+|+||+||++|++.|...  +...+.+|+.|+++|+|++..++..+......
T Consensus       280 ~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~  355 (396)
T PRK08163        280 VAKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGRI  355 (396)
T ss_pred             ccccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            56776  499999999999999999999999999999999999752  33357899999999999999999887655443

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=1.5e-35  Score=323.08  Aligned_cols=335  Identities=16%  Similarity=0.159  Sum_probs=210.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      .+|+||||||+||++|+.|+++|++|+||||++.+...+.+..+.++++++|+++ ||.+.+.+.+.+...   +. +.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~---~~-~~~   76 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRG---AS-FVD   76 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccc---eE-EEe
Confidence            4899999999999999999999999999999999888888889999999999999 999999876655432   22 223


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..|..+...........   .-......+.|..|.++|.+.+ ..+                   ++++|++++++++++
T Consensus        77 ~~g~~~~~~~~~~~~~~---~~~~~~~~i~R~~L~~~l~~~~-~~~-------------------v~i~~~~~v~~i~~~  133 (372)
T PRK05868         77 RDGNELFRDTESTPTGG---PVNSPDIELLRDDLVELLYGAT-QPS-------------------VEYLFDDSISTLQDD  133 (372)
T ss_pred             CCCCEEeecccccccCC---CCCCceEEEEHHHHHHHHHHhc-cCC-------------------cEEEeCCEEEEEEec
Confidence            35554432111000000   0011123566778888776543 233                   389999999999998


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccc-ccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (712)
                      +++|++++.   +|+    ++++|+||||||++|.||+++...... ...+. .....+..+..   . .. .....|.+
T Consensus       134 ~~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g-~~~~~~~~~~~---~-~~-~~~~~~~~  200 (372)
T PRK05868        134 GDSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG-THAAIFTVPNF---L-EL-DYWQTWHY  200 (372)
T ss_pred             CCeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecc-eEEEEEEcCCC---C-CC-CcceEEEe
Confidence            888887765   443    578999999999999999998432211 11111 12222222211   1 11 12223334


Q ss_pred             ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcc-eEEE-ee--cce-echhhhccc
Q 005134          283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDI-DVID-IK--PWV-MHAEVAEKF  354 (712)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~-~i~~-~~--~w~-~~~~va~~~  354 (712)
                      +++....+++...+...+.+. .+............+...+.+++.+   ++....+ +.+. ..  .|. +.....++|
T Consensus       201 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w  279 (372)
T PRK05868        201 GDSTMAGVYSARNNTEARAAL-AFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRW  279 (372)
T ss_pred             cCCcEEEEEecCCCCceEEEE-EEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCC
Confidence            544433333333221212211 1111111111112233344444443   3432211 1211 11  111 333455688


Q ss_pred             cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHH
Q 005134          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (712)
Q Consensus       355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s  424 (712)
                      .  +|||+|+|||||.++|+.|||+|+||+||+.||+.|+..  ....+++|+.|+...||+..+.++..
T Consensus       280 ~--~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~  345 (372)
T PRK05868        280 S--RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLV  345 (372)
T ss_pred             C--CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence            7  599999999999999999999999999999999999763  22368899999999888888766654

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=320.32  Aligned_cols=336  Identities=18%  Similarity=0.202  Sum_probs=220.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ..||+||||||+||++|+.|+++|++|+||||++.+...+.+..++++++++|+++ |+.+.+.+.+.+....   . ..
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~---~-~~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGV---D-LF   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccce---E-EE
Confidence            47999999999999999999999999999999998888889999999999999999 9999998877655321   1 22


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                      +..|+.+..++......  . ..+ ....+.|..|.+.|.+.+.+.|+                   ++++++++++++.
T Consensus        79 ~~~g~~~~~~~~~~~~~--~-~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~~  135 (375)
T PRK06847         79 DPDGTLLAELPTPRLAG--D-DLP-GGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAIEQ  135 (375)
T ss_pred             CCCCCEEEecCcccccc--c-CCC-CcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEEEE
Confidence            33555544332111000  0 001 23568899999999999988776                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCCcccccccccEEEEEeecCccccccccCCCceEEEE
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (712)
                      +++++++++.   +|+    ++++|+||+|||.+|.+|+++ +.... . .+.....+....+....     ... .+.+
T Consensus       136 ~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~-~-~~~g~~~~~~~~~~~~~-----~~~-~~~~  200 (375)
T PRK06847        136 DDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE-P-EYTGQGVWRAVLPRPAE-----VDR-SLMY  200 (375)
T ss_pred             cCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC-c-eeccceEEEEEecCCCC-----ccc-eEEE
Confidence            8888776653   443    689999999999999999987 43221 1 11111111111111000     011 1222


Q ss_pred             eecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCC-c---c-eEE----Eeecceech-hhh
Q 005134          282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-D---I-DVI----DIKPWVMHA-EVA  351 (712)
Q Consensus       282 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~-~---~-~i~----~~~~w~~~~-~va  351 (712)
                      .+++....+++... ...|.+... ..+.  ...++++...+.+++.+..... .   + +.+    ....|++.. ...
T Consensus       201 ~~~~~~~~~~p~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (375)
T PRK06847        201 LGPTTKAGVVPLSE-DLMYLFVTE-PRPD--NPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVP  276 (375)
T ss_pred             eCCCcEEEEEcCCC-CeEEEEEec-cCcc--cccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCC
Confidence            34333323333321 122332221 1111  1223444444455544331111 0   0 001    111222222 234


Q ss_pred             ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005134          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (712)
Q Consensus       352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~  430 (712)
                      .+|.  .|||+|+|||||.|+|++|||+|+||+||.+|+++|..   ....+.+|+.|+++|+|+++.+++.|..+...
T Consensus       277 ~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~  350 (375)
T PRK06847        277 APWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGRI  350 (375)
T ss_pred             CCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            5676  59999999999999999999999999999999999975   34457899999999999999999988766544

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=5e-35  Score=321.21  Aligned_cols=335  Identities=15%  Similarity=0.126  Sum_probs=202.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      |+..+|+||||||+||++|+.|+++|++|+||||++.+ ...+.+..++++++++|+++ |+.+.. ..+.+...   . 
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~---~-   77 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRE---R-   77 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccc---e-
Confidence            45689999999999999999999999999999999764 34556788999999999999 997654 33333221   1 


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      .+....|+.+...             +.....+.+..|.+.|++.+.                     .++++++++|++
T Consensus        78 ~~~~~~g~~~~~~-------------~~~~~~~~~~~l~~~L~~~~~---------------------~~~i~~~~~v~~  123 (386)
T PRK07236         78 IYLDRDGRVVQRR-------------PMPQTQTSWNVLYRALRAAFP---------------------AERYHLGETLVG  123 (386)
T ss_pred             EEEeCCCCEeecc-------------CCCccccCHHHHHHHHHHhCC---------------------CcEEEcCCEEEE
Confidence            1122344433211             111123456677777765432                     148999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC--ccccccccCCCce
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK--DLGDYLLNERPGM  277 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~--~l~~~~~~~~~~~  277 (712)
                      +++++++|++++.   +|+    +++||+||+|||++|.||+++. +.... .+...+.+.....  .+...........
T Consensus       124 i~~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~-~~~~~-~~~g~~~~~~~v~~~~~~~~~~~~~~~~  194 (386)
T PRK07236        124 FEQDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLL-PDVRP-TYAGYVAWRGLVDEAALPPEARAALRDR  194 (386)
T ss_pred             EEecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhC-CCCCC-CcCCeEEEEEecchHHcCchhhhhcccc
Confidence            9999999887764   453    6899999999999999999983 22212 2222222211111  1111000000111


Q ss_pred             EEEEeecCCeEEEEEecCCC-------C--eEEEEEecCCCCC---CC--------------CCCCHHHHHHHHHHHhC-
Q 005134          278 LFFIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQ---NL--------------EDFSPEICEKLIFKLVG-  330 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~-------~--~~~~~~~~~~~~~---~~--------------~~~~~e~~~~~i~~~~g-  330 (712)
                      ..+...++...+.++.+...       .  .|++..+......   ..              ....++. .+.+++... 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~  273 (386)
T PRK07236        195 FTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDV-LAELRDDAAE  273 (386)
T ss_pred             eEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHH-HHHHHHHHHH
Confidence            22223333333333322110       1  2444433221100   00              0011222 223322211 


Q ss_pred             -CCCCcceEE----EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhh
Q 005134          331 -WELSDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASI  405 (712)
Q Consensus       331 -~~~~~~~i~----~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~l  405 (712)
                       +.+.-.+++    ....|.+.....++|.  .|||+|+|||||.|+|+.|||+|+||+||..|+++|....  ...+.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~a  349 (386)
T PRK07236        274 LLAPVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAA  349 (386)
T ss_pred             hcCHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHH
Confidence             111000000    1112333333456776  5999999999999999999999999999999999997642  225789


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          406 LNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       406 L~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      |+.|+++|+|+++.++..|.....
T Consensus       350 l~~Ye~~R~~r~~~~~~~s~~~~~  373 (386)
T PRK07236        350 LAAWEAERLAVGAAIVARGRRLGA  373 (386)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999999999998865433

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=4e-35  Score=324.96  Aligned_cols=345  Identities=18%  Similarity=0.257  Sum_probs=208.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcc-ccce--eE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD-LWRK--FI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~-~~~~--~~  119 (712)
                      ++|+||||||+||++|+.|+++| ++|+||||++.....+.+..+.++++++|+++ |+.+.+.+.+.... .+..  +.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEE
Confidence            47999999999999999999998 69999999999888889999999999999999 99988877653211 1111  11


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +.....+..+...       +   ........+.|..|...|.+.+..                     ..++++++|++
T Consensus        80 ~~~~~~~~~~~~~-------~---~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~  128 (414)
T TIGR03219        80 WRNGSDASYLGAT-------I---APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQ  128 (414)
T ss_pred             EEecCccceeeee-------c---cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEE
Confidence            1111111111100       0   001112357888888888876532                     26899999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCC--cc-cccccccEEEEE--eecCccccc-----
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID--LV-GEKDLQKLVSVH--FLSKDLGDY-----  269 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~--~~-g~~~~~~~~~~~--~~~~~l~~~-----  269 (712)
                      ++++++++++++.   +|+    ++++|+||+|||++|.||+.+...  .. ....+.....+.  +...++...     
T Consensus       129 i~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~  201 (414)
T TIGR03219       129 IEEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAG  201 (414)
T ss_pred             EEecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccc
Confidence            9999888877664   443    689999999999999999987311  00 011111111111  111111110     


Q ss_pred             cccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCC------CCCCCC-HHHHHHHHHHHhCCCCCcceE----
Q 005134          270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ------NLEDFS-PEICEKLIFKLVGWELSDIDV----  338 (712)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~e~~~~~i~~~~g~~~~~~~i----  338 (712)
                      ..........+++.++...++++...+ ..+.+..-...+..      ....++ +....++++.+-++.+.-.++    
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~  280 (414)
T TIGR03219       202 LDEHLVDVPQMYLGLDGHILTFPVRQG-RLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECI  280 (414)
T ss_pred             ccccccccceEEEcCCCeEEEEECCCC-cEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhC
Confidence            000000111122334333333333222 11221111111100      001121 111222333322322100000    


Q ss_pred             EEeecceech-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cCCCchhhHHHHHHhhhHH
Q 005134          339 IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKPI  416 (712)
Q Consensus       339 ~~~~~w~~~~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a~~~lL~sY~~eRrp~  416 (712)
                      .....|.+.. ...++|.  +|||+|+|||||.|+|+.|||+|+||+||.+|++.|.... ++...+.+|+.|+++|+|+
T Consensus       281 ~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r  358 (414)
T TIGR03219       281 PAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR  358 (414)
T ss_pred             CCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH
Confidence            1112233322 2356776  5999999999999999999999999999999999998754 2344578999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005134          417 AEFNTALSVQNFRA  430 (712)
Q Consensus       417 a~~~~~~s~~~~~~  430 (712)
                      +..+++.|..+...
T Consensus       359 ~~~~~~~s~~~~~~  372 (414)
T TIGR03219       359 ACRVQRTSREAGEL  372 (414)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998866543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=4.5e-33  Score=315.91  Aligned_cols=352  Identities=19%  Similarity=0.253  Sum_probs=210.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---ceeecCHhHHHHHHhhhc--HHHHHHhcCCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDG--LAEEIERSQPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~---ra~~i~~rtmeilr~l~G--l~d~l~~~~~~~~~  114 (712)
                      ....+|+||||||+||++|+.|+++|++|+||||++.. ...+   +++.|+++++++|+++ |  +.+++.+.+.....
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~  157 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD  157 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence            45689999999999999999999999999999998743 2212   5688999999999999 7  46777776643211


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                       ....+.....|.....++......  ....| ....+.|..|+++|.+.+.   .                  ..++++
T Consensus       158 -~i~~~~d~~~G~~~~~~~~~~~~~--~~g~p-~~~~I~R~~L~~~L~~alg---~------------------~~i~~g  212 (668)
T PLN02927        158 -RINGLVDGISGSWYVKFDTFTPAA--SRGLP-VTRVISRMTLQQILARAVG---E------------------DVIRNE  212 (668)
T ss_pred             -eeeeeeecCCCceEeecccccccc--ccCCC-eEEEEeHHHHHHHHHhhCC---C------------------CEEEcC
Confidence             111122223444433332211110  00011 1346899999999977542   2                  257899


Q ss_pred             cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCCcccccccccEEEEEeecCccccccccC
Q 005134          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (712)
Q Consensus       195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~  273 (712)
                      ++|+++++++++|++++.   +|+    ++++|+||||||++|.||+.+ +..   ...+.....+....+......  .
T Consensus       213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~---~~~~sG~~~~rgi~~~~p~~~--~  280 (668)
T PLN02927        213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRS---EATYSGYTCYTGIADFIPADI--E  280 (668)
T ss_pred             CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCC---CCcccceEEEEEEcCCCcccc--c
Confidence            999999999999887664   443    679999999999999999987 322   112222222221111111000  0


Q ss_pred             CCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHH-hCCCCCcceEE------Eeeccee
Q 005134          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL-VGWELSDIDVI------DIKPWVM  346 (712)
Q Consensus       274 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~-~g~~~~~~~i~------~~~~w~~  346 (712)
                      .... ..+.++..  .++..+...+.+.+......+... .+ ..+...+.+.+. -++.+.-.+++      ....|.+
T Consensus       281 ~~~~-~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~-~~-~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~i  355 (668)
T PLN02927        281 SVGY-RVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGG-AD-APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDI  355 (668)
T ss_pred             ccce-EEEEcCCe--EEEEEcCCCCeEEEEEEEECCccc-cc-cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeE
Confidence            1111 11122222  222223233333332211111110 01 112222222222 22321111111      0112332


Q ss_pred             chh-hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC-------CCchhhHHHHHHhhhHHHH
Q 005134          347 HAE-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAE  418 (712)
Q Consensus       347 ~~~-va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g-------~a~~~lL~sY~~eRrp~a~  418 (712)
                      ... ...+|.  .|||+|+|||||.|+|+.|||+|+||+||+.|+++|....++       ...+.+|+.|+++|+|++.
T Consensus       356 yd~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~  433 (668)
T PLN02927        356 YDRSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVA  433 (668)
T ss_pred             EeccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHH
Confidence            221 223565  599999999999999999999999999999999999887533       2346899999999999999


Q ss_pred             HHHHHHHHHHHHhcccccc
Q 005134          419 FNTALSVQNFRAAMEVPSA  437 (712)
Q Consensus       419 ~~~~~s~~~~~~~~~~~~~  437 (712)
                      .++..+.....+.......
T Consensus       434 ~i~~~ar~a~~~~~~~~~y  452 (668)
T PLN02927        434 IIHAMARMAAIMASTYKAY  452 (668)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9988876655555443333

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=7.5e-33  Score=311.73  Aligned_cols=344  Identities=17%  Similarity=0.154  Sum_probs=210.4

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ....+||+||||||+|+++|+.|+++|++|+|+||.........+..++++++++|+++ |+.+++.......  +..+.
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~--~~~~~  116 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQK--ATGMA  116 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCcc--cccEE
Confidence            45668999999999999999999999999999999876555667889999999999999 9999887653321  12222


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      ...  .|+... .+...... .. ........+.+.+|.+.|++++.+.+.                  ++++++ ++++
T Consensus       117 v~~--~g~~~~-~~~~~~~~-~~-~~~~~g~~i~r~~l~~~L~~~a~~~~~------------------V~i~~g-tvv~  172 (514)
T PLN02985        117 VYK--DGKEAV-APFPVDNN-NF-PYEPSARSFHNGRFVQRLRQKASSLPN------------------VRLEEG-TVKS  172 (514)
T ss_pred             EEE--CCEEEE-EeCCCCCc-CC-CcccceeeeecHHHHHHHHHHHHhCCC------------------eEEEee-eEEE
Confidence            211  343321 11111000 00 001123467889999999999987643                  477766 4666


Q ss_pred             EEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       200 v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      +..+++. +.|++.+. +|+  +.+++||+||+|||.+|.+|+++++.....  .......  ......  .  ..+...
T Consensus       173 li~~~~~v~gV~~~~~-dG~--~~~~~AdLVVgADG~~S~vR~~l~~~~~~~--~s~~~~~--~~~~~~--~--~~~~~~  241 (514)
T PLN02985        173 LIEEKGVIKGVTYKNS-AGE--ETTALAPLTVVCDGCYSNLRRSLNDNNAEV--LSYQVGY--ISKNCR--L--EEPEKL  241 (514)
T ss_pred             EEEcCCEEEEEEEEcC-CCC--EEEEECCEEEECCCCchHHHHHhccCCCcc--eeEeEEE--EEcccc--C--CCCCcc
Confidence            6555443 24555432 342  457889999999999999999998654321  1111111  111110  0  112223


Q ss_pred             EEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHH------------HHHHHHhC--CCCCcceEEEeecc
Q 005134          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE------------KLIFKLVG--WELSDIDVIDIKPW  344 (712)
Q Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------------~~i~~~~g--~~~~~~~i~~~~~w  344 (712)
                      +.++.+....++++...+...+.+.++...    ....+.....            +.+++.+.  .+.. .++.....+
T Consensus       242 ~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~  316 (514)
T PLN02985        242 HLIMSKPSFTMLYQISSTDVRCVFEVLPDN----IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTK  316 (514)
T ss_pred             eEEcCCCceEEEEEeCCCeEEEEEEEeCCC----CCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcc
Confidence            334444444444444322222233333211    1111111111            12222211  1111 112211111


Q ss_pred             eechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH---cCCCchhhHHHHHHhhhHHHHHHH
Q 005134          345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPIAEFNT  421 (712)
Q Consensus       345 ~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl---~g~a~~~lL~sY~~eRrp~a~~~~  421 (712)
                         ......+.  .+|++|+|||||.|+|+.|||||+||+||..|+..|...-   +..+..++|++|+.+|+|++..++
T Consensus       317 ---~l~~~~~~--~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~  391 (514)
T PLN02985        317 ---RMSATLSD--KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVN  391 (514)
T ss_pred             ---cccccccC--CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHH
Confidence               12223333  4899999999999999999999999999999999997642   122346899999999999999999


Q ss_pred             HHHHHHHHHh
Q 005134          422 ALSVQNFRAA  431 (712)
Q Consensus       422 ~~s~~~~~~~  431 (712)
                      ..|...++.+
T Consensus       392 ~la~al~~~f  401 (514)
T PLN02985        392 TLGNAFSQVL  401 (514)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3.9e-33  Score=289.84  Aligned_cols=320  Identities=23%  Similarity=0.247  Sum_probs=190.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      +-+|+|||||++||++|++|+|.|++|+|+|++..++..++++.+.-+++.+|+.+ |+.+.++..+.|...+   +..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~---v~~~   77 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGR---VLIH   77 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCcccce---eeee
Confidence            36899999999999999999999999999999998888899998888899999999 9999999999988543   2445


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE-----
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC-----  197 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v-----  197 (712)
                      ..+|++..++......++        ...+.|..+.+.|+..+...+                    .|+|+..+     
T Consensus        78 ~~sg~~~~~~~~~~~~~~--------i~r~~~r~ll~~lL~~a~~~~--------------------~ikf~~~~~~~~~  129 (420)
T KOG2614|consen   78 GDSGKEVSRILYGEPDEY--------ILRINRRNLLQELLAEALPTG--------------------TIKFHSNLSCTSK  129 (420)
T ss_pred             cCCCCeeEecccCCchHH--------HHHHHHHHHHHHHHHhhcCCC--------------------eeecccccccccc
Confidence            667887776654433322        245556555555554444332                    56666532     


Q ss_pred             -EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccc--cccCC
Q 005134          198 -VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY--LLNER  274 (712)
Q Consensus       198 -~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~  274 (712)
                       +.++.......+.+.   +|    .++++|+||||||++|.||+.|+........++.+..+.|........  .....
T Consensus       130 ~~~~~~~~~~~~v~l~---~g----~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~  202 (420)
T KOG2614|consen  130 DVEIETLGKKLVVHLS---DG----TTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIY  202 (420)
T ss_pred             cceeeecccccceecC---CC----cEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceeccc
Confidence             233332233333332   34    379999999999999999999987654455555555554433221110  00011


Q ss_pred             CceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC-------HHHHHHHHHHHhCCCCCcce-EEEeeccee
Q 005134          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-------PEICEKLIFKLVGWELSDID-VIDIKPWVM  346 (712)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~i~~~~g~~~~~~~-i~~~~~w~~  346 (712)
                      +..++....+....+++..-...-.+.+..++..++.. ....       ++.+.+++. +++.+..... +....||++
T Consensus       203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l-~~~~~~v~~~~~en~~d~i~-~~~~e~i~~t~l~~r~p~~~  280 (420)
T KOG2614|consen  203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL-KKTSLEVVDFFPENFPDIIE-LTGEESIVRTPLADRPPWPL  280 (420)
T ss_pred             CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHH-hhhHHHHHHHhHHhHHHHHH-hcChHHhhhchhhhcCCcCe
Confidence            12222222222111111111111122222222111110 1111       122222221 1221111111 223334443


Q ss_pred             chhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 005134          347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYE  410 (712)
Q Consensus       347 ~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~  410 (712)
                         ++-+.+  .++|+|+|||||.|.|+.|||+|+|++|+..|+.+|+...+.  .+..+.+|+
T Consensus       281 ---i~~~~s--~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s  337 (420)
T KOG2614|consen  281 ---ISVKCS--PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYS  337 (420)
T ss_pred             ---eeeccC--CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhcccccee
Confidence               222232  479999999999999999999999999999999999988653  233344444

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=2.1e-31  Score=301.25  Aligned_cols=342  Identities=16%  Similarity=0.110  Sum_probs=203.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.. .....+..|+++++++|+++ |+.+++...+.+...   +..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~---~~v  107 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFG---YVV  107 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceee---eEE
Confidence            4699999999999999999999999999999998722 22345678999999999999 999999877765432   111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                       .+..|+.+ .+...         .......+.+.++.+.|++.+.+.-                .++++++. .+++++
T Consensus       108 -~~~~G~~~-~i~~~---------~~~~g~~~~rg~~~~~Lr~~a~~~~----------------~~~V~v~~-~~v~~l  159 (567)
T PTZ00367        108 -FDHKGKQV-KLPYG---------AGASGVSFHFGDFVQNLRSHVFHNC----------------QDNVTMLE-GTVNSL  159 (567)
T ss_pred             -EECCCCEE-EecCC---------CCCceeEeEHHHHHHHHHHHHHhhc----------------CCCcEEEE-eEEEEe
Confidence             12234332 11110         0111234567788888888772110                01246654 467777


Q ss_pred             EEcCCe-----EEEEEEeccCCc------------------eeeEEEEecEEEeccCCCchhhcccCCCcccccccccEE
Q 005134          201 SATDQC-----INVIASFLKEGK------------------CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV  257 (712)
Q Consensus       201 ~~~~~~-----v~v~v~~~~~g~------------------~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~  257 (712)
                      ..+++.     ..|++...+.++                  ....+++||+||||||.+|.||+++++......+...+.
T Consensus       160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~  239 (567)
T PTZ00367        160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV  239 (567)
T ss_pred             ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence            544332     223333221100                  012479999999999999999999976433233333332


Q ss_pred             EEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCC-CCC---C--------CHHHHHHHH
Q 005134          258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LED---F--------SPEICEKLI  325 (712)
Q Consensus       258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--------~~e~~~~~i  325 (712)
                      ........+.      .+.....++.++...++++...  ++..+.+.+..+... ..+   +        .++.+.+.+
T Consensus       240 g~~~~~~~lp------~~~~~~v~~g~~gpi~~yPl~~--~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f  311 (567)
T PTZ00367        240 GLVLKNVRLP------KEQHGTVFLGKTGPILSYRLDD--NELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESF  311 (567)
T ss_pred             EEEEecccCC------CCCeeEEEEcCCceEEEEEcCC--CeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHH
Confidence            2222111111      1222233456655555555543  332222222111100 000   0        011111112


Q ss_pred             HHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc----CC-
Q 005134          326 FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK----DI-  400 (712)
Q Consensus       326 ~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~----g~-  400 (712)
                      .+.+... ..     ...|+.....+.++.  .+||+|+|||||.|+|+.|||||+||+||..|+++|..+.+    .. 
T Consensus       312 ~~~l~~~-~~-----l~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~  383 (567)
T PTZ00367        312 IRASKDT-KR-----IRSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN  383 (567)
T ss_pred             HHhhccc-CC-----eEEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCch
Confidence            1111100 11     122333333344444  58999999999999999999999999999999999986532    11 


Q ss_pred             ---CchhhHH----HHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          401 ---APASILN----TYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       401 ---a~~~lL~----sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                         ..+.+|+    +|+.+|++++..++..+...++.+
T Consensus       384 d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf  421 (567)
T PTZ00367        384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVF  421 (567)
T ss_pred             hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence               1256677    999999999999998887776554

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.96  E-value=3.2e-27  Score=262.20  Aligned_cols=329  Identities=13%  Similarity=0.143  Sum_probs=194.3

Q ss_pred             cCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC
Q 005134           31 LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP  110 (712)
Q Consensus        31 ~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~  110 (712)
                      ++...+.+++.+++||+||||||+|+++|+.|+++|++|+|+||+.. ...+++..|+.   +.++++ |+.+.+.....
T Consensus        27 ~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~i  101 (450)
T PLN00093         27 LAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRKV  101 (450)
T ss_pred             eecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHHh
Confidence            33334445667789999999999999999999999999999999864 45678888865   556677 77666544211


Q ss_pred             CccccceeEeeecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccc
Q 005134          111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (712)
Q Consensus       111 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (712)
                      .     ...+. +..+..+. +..        ...+. ....++|..|++.|.+++.+.|+                   
T Consensus       102 ~-----~~~~~-~p~~~~v~-~~~--------~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------  147 (450)
T PLN00093        102 T-----KMKMI-SPSNVAVD-IGK--------TLKPHEYIGMVRREVLDSFLRERAQSNGA-------------------  147 (450)
T ss_pred             h-----hheEe-cCCceEEE-ecc--------cCCCCCeEEEecHHHHHHHHHHHHHHCCC-------------------
Confidence            1     11111 11221111 000        01111 12358999999999999999887                   


Q ss_pred             eEEeCcEEEEEEEc---CCeEEEEEEecc----CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEee
Q 005134          190 EILMGHECVSVSAT---DQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL  262 (712)
Q Consensus       190 ~v~~g~~v~~v~~~---~~~v~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~  262 (712)
                      +++.+ ++++++..   ++.+.+++....    +|+  ..+++||+||||||++|.||+.+++...   .....+...+.
T Consensus       148 ~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~--~~~v~a~~VIgADG~~S~vrr~lg~~~~---~~~~~~~~~~~  221 (450)
T PLN00093        148 TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT--PKTLEVDAVIGADGANSRVAKDIDAGDY---DYAIAFQERIK  221 (450)
T ss_pred             EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC--ccEEEeCEEEEcCCcchHHHHHhCCCCc---ceeEEEEEEEe
Confidence            77766 47777642   345666665321    132  3579999999999999999999987521   11111111111


Q ss_pred             cCccccccccCCCceEEEEe----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceE
Q 005134          263 SKDLGDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDV  338 (712)
Q Consensus       263 ~~~l~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i  338 (712)
                      .++.  .. ...+....+.+    .|+..+|+++..   +...+.+.....     ..+.....+.++..+.......++
T Consensus       222 ~~~~--~~-~~~~~~~~~~~g~~~~p~~Y~WifP~g---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~  290 (450)
T PLN00093        222 IPDD--KM-EYYEDLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVVN-----KPAIKKYQRATRNRAKDKIAGGKI  290 (450)
T ss_pred             CChh--hc-cccCCeEEEEeCCCCCCCceEEEEECC---CcEEEEEEEccC-----CCChHHHHHHHHHHhhhhcCCCeE
Confidence            1110  00 01111222222    244455666543   122222211111     112223333343333221111223


Q ss_pred             EEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC---CchhhHHHHHHhhhH
Q 005134          339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP  415 (712)
Q Consensus       339 ~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp  415 (712)
                      .....+.+......++.  .+|++|+|||||.++|+.|+|++.||.++..+|+.++..++..   .....|..|++..+.
T Consensus       291 ~~~~~~~ip~~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~  368 (450)
T PLN00093        291 IRVEAHPIPEHPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDK  368 (450)
T ss_pred             EEEEEEEccccccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence            32222222223344555  4899999999999999999999999999999999999887432   245779999987665


Q ss_pred             HH
Q 005134          416 IA  417 (712)
Q Consensus       416 ~a  417 (712)
                      .-
T Consensus       369 ~~  370 (450)
T PLN00093        369 KY  370 (450)
T ss_pred             HH
Confidence            43

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.96  E-value=1.2e-28  Score=290.61  Aligned_cols=327  Identities=20%  Similarity=0.262  Sum_probs=201.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhc--HHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~G--l~d~l~~~~~~~~~~~~~~  119 (712)
                      ++|+||||||+||++|+.|+++  |++|+|+||++.....+++..+++++++.|+.+ +  +.+.+......   |....
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~~~---~~~~~   76 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAFNH---WDDID   76 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhccc---CCceE
Confidence            4799999999999999999998  899999999998877888999999999999877 5  34444432211   22111


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +..  .|..+.             ........+.|..|.++|++++.+.|+                   ++++++++++
T Consensus        77 ~~~--~g~~~~-------------~~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~  122 (765)
T PRK08255         77 VHF--KGRRIR-------------SGGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPD  122 (765)
T ss_pred             EEE--CCEEEE-------------ECCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCc
Confidence            111  222111             011122468899999999999999887                   8999998876


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++.                   .+++|+||+|||.+|.||+++...+.............+....   ..     ....
T Consensus       123 i~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~---~~-----~~~~  175 (765)
T PRK08255        123 DQAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHK---VF-----DAFT  175 (765)
T ss_pred             hhhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCC---cc-----ccee
Confidence            5320                   1368999999999999999864322211011000000110000   00     0000


Q ss_pred             EEeecCCeEE----EEEecCCCCeEEEEEecCCC---CCCCCCCCHHHHHHHHHHHhCCCCCcceEEE------eeccee
Q 005134          280 FIFNTEAIGV----LVAHDLKEGEFILQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVM  346 (712)
Q Consensus       280 ~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~------~~~w~~  346 (712)
                      +.+.+...++    .++.......|++..+  +.   ......++++...+.+++.+........++.      ...|..
T Consensus       176 ~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~  253 (765)
T PRK08255        176 FAFEETEHGWFQAHAYRFDDDTSTFIVETP--EEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWIN  253 (765)
T ss_pred             EEEEecCCceEEEEEeeeCCCCcEEEEEcC--HHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeee
Confidence            0111111111    1222222222333221  11   0122344555555555554432211111211      122543


Q ss_pred             -chhhhccccccCCc----EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHH
Q 005134          347 -HAEVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT  421 (712)
Q Consensus       347 -~~~va~~~~~~~gR----V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~  421 (712)
                       ....+++|.  .||    |+|+|||||.++|+.|||+|+||+||+.|++.|....  ...+.+|+.|+++|+++++.++
T Consensus       254 ~~~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~~~al~~ye~~R~~r~~~~~  329 (765)
T PRK08255        254 FPRVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDLPAALAAYEEERRVEVLRIQ  329 (765)
T ss_pred             cceeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence             334567777  488    9999999999999999999999999999999998642  2468899999999999999999


Q ss_pred             HHHHHHHHHhcccccccCCC
Q 005134          422 ALSVQNFRAAMEVPSALGLD  441 (712)
Q Consensus       422 ~~s~~~~~~~~~~~~~~g~~  441 (712)
                      +.|..+..++.......+.+
T Consensus       330 ~~s~~~~~~~~~~~~~~~~~  349 (765)
T PRK08255        330 NAARNSTEWFENVERYAGLE  349 (765)
T ss_pred             HHHHHhCceeeecchhhCCC
Confidence            99887655554433333443

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.96  E-value=8.6e-28  Score=253.47  Aligned_cols=291  Identities=19%  Similarity=0.227  Sum_probs=183.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+||++|+.|+++|++|+||||++.+....++..+.+++++.+... +.. .+..       +....+ ..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~-------~~~~~~-~~   70 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LEL-IVNL-------VRGARF-FS   70 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chh-hhhh-------eeeEEE-Ec
Confidence            6999999999999999999999999999999998777778889999999998876 541 1111       111111 12


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..++.+. ..          ........++|.+|++.|.+.+.+.|+                   ++++++++++++++
T Consensus        71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~  120 (295)
T TIGR02032        71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH  120 (295)
T ss_pred             CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence            2332221 10          111224568999999999999998887                   99999999999998


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEee
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (712)
                      ++++++.+.   ++   ..++++|+||+|||.+|.+|+.+++...... ....+...+..+. ...  ......+++-+.
T Consensus       121 ~~~~~~~~~---~~---~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~  190 (295)
T TIGR02032       121 DDRVVVIVR---GG---EGTVTAKIVIGADGSRSIVAKKLGLRKEPRE-LGVAARAEVEMPD-EEV--DEDFVEVYIDRG  190 (295)
T ss_pred             CCEEEEEEc---Cc---cEEEEeCEEEECCCcchHHHHhcCCCCCCcc-eeeEEEEEEecCC-ccc--CcceEEEEcCCC
Confidence            888777654   22   2478999999999999999999886643211 1112222333221 000  111111221111


Q ss_pred             --cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC-HHHHHHHHHHHhCCCCCcceEEEeecceech-hhhccccccCC
Q 005134          284 --TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHA-EVAEKFLCCYN  359 (712)
Q Consensus       284 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~-~va~~~~~~~g  359 (712)
                        +....++++.  .++.+.+.+......   ...+ .+.+.++++.. +. ....++.....|.... ....++.  .+
T Consensus       191 ~~~~~~~~~~P~--~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~--~~  261 (295)
T TIGR02032       191 ISPGGYGWVFPK--GDGTANVGVGSRSAE---EGEDLKKYLKDFLARR-PE-LKDAETVEVIGAPIPIGRPDDKTV--RG  261 (295)
T ss_pred             cCCCceEEEEeC--CCCeEEEeeeeccCC---CCCCHHHHHHHHHHhC-cc-cccCcEEeeeceeeccCCCCCccc--cC
Confidence              2233444444  334555543322221   1122 23333334332 11 1233444444444332 2344554  59


Q ss_pred             cEEEEccCCccCCCCCCcchhhHHHHHHHHHHHH
Q 005134          360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI  393 (712)
Q Consensus       360 RV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkL  393 (712)
                      ||+|+|||||.++|+.|||||+||+||..+|+.|
T Consensus       262 ~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       262 NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.96  E-value=7.2e-27  Score=256.64  Aligned_cols=318  Identities=16%  Similarity=0.183  Sum_probs=196.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+|+++|+.|+++|++|+|+||+. ....+++..++++   +++++ |+.+++.....     ..... .+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~~-----~~~~~-~~   69 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRRV-----TQMRM-IS   69 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhhc-----ceeEE-Ec
Confidence            699999999999999999999999999999983 3445678888875   45666 77666554321     11111 12


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..|..+. ....        ........++|..|++.|.+++.+.|+                   +++.+ +++++..+
T Consensus        70 ~~~~~~~-~~~~--------~~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~~  120 (388)
T TIGR02023        70 PSRVPIK-VTIP--------SEDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLERD  120 (388)
T ss_pred             CCCceee-eccC--------CCCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEEc
Confidence            2232211 1100        000112358999999999999998887                   77665 59999988


Q ss_pred             CCeEEEEEEec---cCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          204 DQCINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       204 ~~~v~v~v~~~---~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      ++++++++...   .++  +..+++|++||+|||.+|.||+.+|++....  ....+...|..++. ..  ...+....+
T Consensus       121 ~~~~~v~~~~~~~~~~~--~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~-~~--~~~~~~~~~  193 (388)
T TIGR02023       121 RDGVTLTYRTPKKGAGG--EKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD-KM--AYYEELADV  193 (388)
T ss_pred             CCeEEEEEEeccccCCC--cceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch-hc--ccCCCeEEE
Confidence            88887777631   122  2357999999999999999999998763211  11112222321110 00  011112222


Q ss_pred             Ee----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccc
Q 005134          281 IF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLC  356 (712)
Q Consensus       281 ~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~  356 (712)
                      ++    .|+..+++++..   +...+.....     ....+.+...+.+++..+...  .++.......+.....++|. 
T Consensus       194 ~~~~~~~p~~y~wv~P~~---~~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ip~~~~~~~~-  262 (388)
T TIGR02023       194 YYGGEVSPDFYGWVFPKG---DHIAVGTGTG-----THGFDAKQLQANLRRRAGLDG--GQTIRREAAPIPMKPRPRWD-  262 (388)
T ss_pred             EECCCcCCCceEEEeeCC---CeeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCC--ceEeeeeeEecccccccccc-
Confidence            22    234444444432   2222222111     111234445555655544221  12222111222223445665 


Q ss_pred             cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHH
Q 005134          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT  421 (712)
Q Consensus       357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~  421 (712)
                       .+|++|+|||||.++|++|+|+++||.++..+|+.|+..+++. ....|..|+++.+..-....
T Consensus       263 -~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~~~~  325 (388)
T TIGR02023       263 -FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYGTTF  325 (388)
T ss_pred             -CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence             4899999999999999999999999999999999999988653 46789999998887654333

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=99.95  E-value=1.6e-26  Score=250.39  Aligned_cols=308  Identities=20%  Similarity=0.273  Sum_probs=180.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~----~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +||+||||||+||++|+.|+++ ++|+|+||++...    ..+++..++++++++|+++ |+.........+.       
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~-------   72 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ-------   72 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc-------
Confidence            7999999999999999999999 9999999998643    3468899999999999999 8742110000000       


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                            ...+..++....  ... ......+.++|..|+..|.+.+ +.++                   ++++++++++
T Consensus        73 ------~~~~~~~~~~~~--~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~  123 (351)
T PRK11445         73 ------IFAVKTIDLANS--LTR-NYQRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK  123 (351)
T ss_pred             ------cceeeEeccccc--chh-hcCCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence                  000111111100  000 0111235689999999998854 4455                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      ++++++++.+++.  .+|+  ..+++||+||+|||++|.+|++++.... ...+.. +..++....       ..+. ..
T Consensus       124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~-~~~~~~-~~~~~~~~~-------~~~~-~~  189 (351)
T PRK11445        124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQ-IRKYVA-IQQWFAEKH-------PVPF-YS  189 (351)
T ss_pred             EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCc-hhhEEE-EEEEecCCC-------CCCC-cc
Confidence            9998888877653  2443  2479999999999999999999875421 111111 111222110       0011 11


Q ss_pred             EEeecCC-eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHH---HHHHHHHHHhCCCCCcceEEEeecceechhhhcccc
Q 005134          280 FIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE---ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL  355 (712)
Q Consensus       280 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~  355 (712)
                      .+|+++. .++.+..+.. +.+.+...+ +..     -..+   ...+.+.+ ++....+. +.....+.+.......+.
T Consensus       190 ~~f~~~~~~~~~W~~p~~-~~~~~g~~~-~~~-----~~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  260 (351)
T PRK11445        190 CIFDNEITDCYSWSISKD-GYFIFGGAY-PMK-----DGRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV  260 (351)
T ss_pred             eEEeccCCCceEEEeCCC-CcEEecccc-ccc-----chHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence            1122221 1222222211 222211100 100     0111   11222222 22211111 011111111111122332


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA  417 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a  417 (712)
                      ...+||+|||||||.++|+.|+|+|.|+.|+..|++.|.+.     ....|+.|+...+...
T Consensus       261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~-----~~~~~~~y~~~~~~~~  317 (351)
T PRK11445        261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ-----PEKLNTAYWRKTRKLR  317 (351)
T ss_pred             cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc-----ccchHHHHHHHHHHHH
Confidence            22489999999999999999999999999999999999753     2567999998877765

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.95  E-value=5.1e-25  Score=242.21  Aligned_cols=315  Identities=14%  Similarity=0.141  Sum_probs=183.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+|+++|+.|+++|++|+|+||+... ..+++..++.   +.|+++ |+.+.+......     .... .+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~i~-----~~~~-~~   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRRVT-----KMKM-IS   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhhhc-----eeEE-ec
Confidence            58999999999999999999999999999998643 4567777765   556777 776554432111     1111 11


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE-
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-  202 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~-  202 (712)
                      ..+..+. +..  .  .   ........++|..|++.|.+++.+.|+                   +++.++ +++++. 
T Consensus        70 p~~~~~~-~~~--~--~---~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~~  121 (398)
T TIGR02028        70 PSNIAVD-IGR--T--L---KEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSLP  121 (398)
T ss_pred             CCceEEE-ecc--C--C---CCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEec
Confidence            1121110 000  0  0   001112368999999999999999887                   887775 667653 


Q ss_pred             --cCCeEEEEEEecc----CCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCc
Q 005134          203 --TDQCINVIASFLK----EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG  276 (712)
Q Consensus       203 --~~~~v~v~v~~~~----~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  276 (712)
                        .++.+++++...+    .|+  +.+++|++||+|||++|.||+.+|+...   .....+...+..+...   ....+.
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~g~--~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~~---~~~~~~  193 (398)
T TIGR02028       122 ADADDPYTLHYISSDSGGPSGT--RCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDEK---MAYYDD  193 (398)
T ss_pred             cCCCceEEEEEeeccccccCCC--ccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChhh---cccCCC
Confidence              2345556554222    132  3579999999999999999999986421   1111111112111100   001112


Q ss_pred             eEEEEe----ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhc
Q 005134          277 MLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAE  352 (712)
Q Consensus       277 ~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~  352 (712)
                      ...+++    .|++.+|+++..   +...+.+.....     ....+.+.+.++..........++.......+.....+
T Consensus       194 ~~~~~~g~~~~p~gY~WifP~~---~~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~~  265 (398)
T TIGR02028       194 LAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVAA-----KPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPRP  265 (398)
T ss_pred             eEEEEeCCCCCCCceEEEEECC---CeEEEEEEeCCC-----CccHHHHHHhhhhhhhhccCCCcEEEEEEEeccccccc
Confidence            222222    244455655543   222233321111     11223344444332211111112222222222222334


Q ss_pred             cccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC---CchhhHHHHHHhhhH
Q 005134          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP  415 (712)
Q Consensus       353 ~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~---a~~~lL~sY~~eRrp  415 (712)
                      ++.  .+|++|||||||.++|++|+|++.||.++..+|+.++..+...   .....|..|++.-+.
T Consensus       266 ~~~--~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~  329 (398)
T TIGR02028       266 RRV--VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDK  329 (398)
T ss_pred             cEE--CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence            555  4899999999999999999999999999999999999887543   256789999986554

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.92  E-value=5e-23  Score=226.53  Aligned_cols=319  Identities=20%  Similarity=0.204  Sum_probs=197.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCce-eecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra-~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +++||+||||||+|+++|+.|++.|++|+|+||+..+..++++ ..+.++.++-+... ...+ +...-.     ....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~~~-i~~~v~-----~~~~~   74 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FDEE-IERKVT-----GARIY   74 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cchh-hheeee-----eeEEE
Confidence            5699999999999999999999999999999999999877776 78888877666543 2211 211110     11111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      .  . +.....         .  ......+.+.|..|++.|.+++.+.|+                   +++.++++..+
T Consensus        75 ~--~-~~~~~~---------~--~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~  121 (396)
T COG0644          75 F--P-GEKVAI---------E--VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV  121 (396)
T ss_pred             e--c-CCceEE---------e--cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence            1  1 221110         0  000235678999999999999999998                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      ..+++++.+.+.   .+.   .+++|++||+|||.+|.+++++|+.......+...+.-....+     .........++
T Consensus       122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~  190 (396)
T COG0644         122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVP-----DDGDVEEFLYG  190 (396)
T ss_pred             EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecC-----CCCceEEEEec
Confidence            999998877766   232   4799999999999999999999987221111111111111111     00000111112


Q ss_pred             E--eecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-----ceEEEeecce-echhhhc
Q 005134          281 I--FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIKPWV-MHAEVAE  352 (712)
Q Consensus       281 ~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~-----~~i~~~~~w~-~~~~va~  352 (712)
                      .  ..+.+.+|+++..  ++...+.+......   ..... .. +.++++...+...     .++.....-. ....+..
T Consensus       191 ~~~~~~~Gy~wifP~~--~~~~~VG~g~~~~~---~~~~~-~~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~  263 (396)
T COG0644         191 PLDVGPGGYGWIFPLG--DGHANVGIGVLLDD---PSLSP-FL-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPAS  263 (396)
T ss_pred             CCccCCCceEEEEECC--CceEEEEEEEecCC---cCCCc-hH-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCC
Confidence            1  2233444555443  33444443321111   11111 11 3444443322111     1222221111 1112222


Q ss_pred             c-ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHH
Q 005134          353 K-FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA  422 (712)
Q Consensus       353 ~-~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~  422 (712)
                      . +.  .++++||||||..++|+.|.|+..||..|..+|..|.....+.  ...|..|+.+.+........
T Consensus       264 ~~~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~  330 (396)
T COG0644         264 RPLV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDL  330 (396)
T ss_pred             Cccc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHH
Confidence            3 33  4899999999999999999999999999999999999887655  66778888877765544333

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.92  E-value=1.2e-23  Score=217.23  Aligned_cols=354  Identities=21%  Similarity=0.258  Sum_probs=211.7

Q ss_pred             CcccccccccCCCCccCCCC-cccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC--CC-------CCceeec
Q 005134           22 PYGYTQCRALSDSKTIVSNE-AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF--ST-------HPQAHFI   87 (712)
Q Consensus        22 p~~~~~~~~~s~~~~~~~~~-~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~--~~-------~~ra~~i   87 (712)
                      |++.++....+....-+... .++||+||||||+|+++|..|...    -.++.|+|-...+  ..       .-|-..+
T Consensus        14 ~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~   93 (481)
T KOG3855|consen   14 AVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSI   93 (481)
T ss_pred             ccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecC
Confidence            66677776666555434333 479999999999999999999965    5699999987332  11       1245678


Q ss_pred             CHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHH-HHH
Q 005134           88 NNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QLE  166 (712)
Q Consensus        88 ~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~-~~~  166 (712)
                      ++++...|+.+ |.+|.+...-...  ..++.-..+.....+. +++...      ..+. .+.+....+.-.|+. .+.
T Consensus        94 s~~s~~~fk~~-~awd~i~~~R~~~--~~~~~v~Ds~s~a~I~-~~~d~~------~~d~-a~iien~nIq~sL~~s~~~  162 (481)
T KOG3855|consen   94 SPASISLFKSI-GAWDHIFHDRYQK--FSRMLVWDSCSAALIL-FDHDNV------GIDM-AFIIENDNIQCSLYNSQLD  162 (481)
T ss_pred             CcchHHHHHhc-CHHHHhhhhcccc--ccceeeecccchhhhh-hccccc------cccc-eeeeehhHHHHHHHHHHHh
Confidence            99999999999 9999886543221  1111111111111111 000000      0011 122222333444543 222


Q ss_pred             hcCceeeccCccccccccccccceEEeCcEEEEEEE------cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          167 KLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       167 ~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~------~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +.                 .++++|....++..+..      .+++....+... +|    ..+.+|+||||||.+|.||
T Consensus       163 s~-----------------~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~-dg----~~~~~~LLigAdg~Ns~vR  220 (481)
T KOG3855|consen  163 SE-----------------SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLT-DG----INFATDLLIGADGFNSVVR  220 (481)
T ss_pred             hh-----------------cCceeeecccceeeeccccccCCCCCcceEEEEec-cC----ceeeeceeeccccccchhh
Confidence            11                 13458888887766654      234433333322 44    2789999999999999999


Q ss_pred             cccCCCcccccccccEEEEEe-ecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHH
Q 005134          241 KLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE  319 (712)
Q Consensus       241 ~~lgi~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  319 (712)
                      +..++++.+..+.++.+.... ...+.      ..++..+.-|-|.+...+.+....-..++|...- .....+..+++|
T Consensus       221 ~~snid~~~~ny~~havVAtl~l~~~~------~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-~~a~~L~~lp~e  293 (481)
T KOG3855|consen  221 KASNIDVASWNYDQHAVVATLKLEEEA------ILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-ENASILKSLPEE  293 (481)
T ss_pred             hhcCCCcccccccceeeeEEEEecccc------cccchhHHhcCCCCceeecccccccccceeecCH-HHHHHHhcCCch
Confidence            999999988776665544332 22111      1233445556666554454444333456665320 000111222333


Q ss_pred             HHHHHHHHHh-------------------------------CC------CCCcceEEEe--ecceechhhhccccccCCc
Q 005134          320 ICEKLIFKLV-------------------------------GW------ELSDIDVIDI--KPWVMHAEVAEKFLCCYNQ  360 (712)
Q Consensus       320 ~~~~~i~~~~-------------------------------g~------~~~~~~i~~~--~~w~~~~~va~~~~~~~gR  360 (712)
                      ++.+++...+                               +.      ++.-+++.+.  ..|++....++.|.  ..|
T Consensus       294 ~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV--~~~  371 (481)
T KOG3855|consen  294 RFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYV--TDR  371 (481)
T ss_pred             hHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhc--CCc
Confidence            3222222111                               10      1111223222  24677888899998  499


Q ss_pred             EEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-C--CCchhhHHHHHHhhhHHH
Q 005134          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIA  417 (712)
Q Consensus       361 V~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g--~a~~~lL~sY~~eRrp~a  417 (712)
                      +.|+|||||.++|..|||.|+|+.|+..|...|..++. |  .++-.-|+-|+.+|.+.-
T Consensus       372 ~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N  431 (481)
T KOG3855|consen  372 VALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHN  431 (481)
T ss_pred             hhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence            99999999999999999999999999999999998763 3  345678999999996643

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.91  E-value=5.2e-21  Score=210.42  Aligned_cols=305  Identities=17%  Similarity=0.225  Sum_probs=171.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccce-eEeeec
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK-FIYCTS  123 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~-~~~~~~  123 (712)
                      ||+||||||+|+++|+.|++.|++|+|||+++... .++...+...   .+.++ ++.+.+..      .|.. ..+. .
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~---~~~~~-~~~~~~~~------~~~~~~~~~-~   68 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDD---DLSDL-GLADCVEH------VWPDVYEYR-F   68 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHh---hhhhh-chhhHHhh------cCCCceEEe-c
Confidence            79999999999999999999999999999987532 2333333332   23444 54332221      1111 1111 0


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                       .+...              ..+.....+++..|.+.|.+.+.+.|+                   +++ ..++++++.+
T Consensus        69 -~~~~~--------------~~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~  113 (388)
T TIGR01790        69 -PKQPR--------------KLGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEAD  113 (388)
T ss_pred             -CCcch--------------hcCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEec
Confidence             00000              012223468899999999999988776                   664 5578888776


Q ss_pred             -CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134          204 -DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (712)
Q Consensus       204 -~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (712)
                       ++.+.+++.   +|    .+++|++||+|||.+|.+++......   ..++....+.+..... ..  ... ...++-+
T Consensus       114 ~~~~~~v~~~---~g----~~~~a~~VI~A~G~~s~~~~~~~~~~---~~~q~~~G~~~~~~~~-~~--~~~-~~~~~d~  179 (388)
T TIGR01790       114 GVALSTVYCA---GG----QRIQARLVIDARGFGPLVQYVRFPLN---VGFQVAYGVEARLSRP-PH--GPS-SMVIMDA  179 (388)
T ss_pred             CCceeEEEeC---CC----CEEEeCEEEECCCCchhcccccCCCC---ceEEEEEEEEEEEcCC-CC--CCC-ceEEEec
Confidence             555555543   34    26899999999999997764321111   1122233333322110 00  001 1111111


Q ss_pred             ecC----------CeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcceEEEeecceechh
Q 005134          283 NTE----------AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE  349 (712)
Q Consensus       283 ~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~~  349 (712)
                      ...          ..++++..+..++...+.....   ......+.+...+.+.+.+   +.....+.......+++...
T Consensus       180 ~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~  256 (388)
T TIGR01790       180 RVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSL---ADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLP  256 (388)
T ss_pred             cccccccccccCCCCceEEEeecCCCeEEEEeccc---cCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccC
Confidence            100          0012222332222222211100   0112345566666666554   33222222122222333222


Q ss_pred             hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHH
Q 005134          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE  418 (712)
Q Consensus       350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~  418 (712)
                      . . +.  .+||+|+|||||.++|.+|+|+|.+++++..||+.|++.++.. ...+++.|+..-++.-.
T Consensus       257 ~-~-~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~  320 (388)
T TIGR01790       257 G-P-FL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERR  320 (388)
T ss_pred             C-C-cc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHH
Confidence            2 1 22  4899999999999999999999999999999999999887543 46889999765555443

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK10015 oxidoreductase; Provisional

Probab=99.90  E-value=7.1e-22  Score=219.03  Aligned_cols=330  Identities=15%  Similarity=0.198  Sum_probs=179.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc--cc-
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL--WR-  116 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~--~~-  116 (712)
                      +.++|||||||||+|+++|+.|+++|++|+||||.+.+.... ++..++..+++.+-  +++..    . .+.+.  .. 
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~--~~~~~----~-~~i~~~~~~~   75 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII--PGFAA----S-APVERKVTRE   75 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc--ccccc----c-CCccccccce
Confidence            456999999999999999999999999999999998764432 34455554444331  12221    0 11110  01 


Q ss_pred             eeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (712)
Q Consensus       117 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~  196 (712)
                      .+.+.. ..+...  ++.... ...  ..+...+.+.|..|++.|.+++.+.|+                   +++++++
T Consensus        76 ~~~~~~-~~~~~~--~~~~~~-~~~--~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~  130 (429)
T PRK10015         76 KISFLT-EESAVT--LDFHRE-QPD--VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVR  130 (429)
T ss_pred             eEEEEe-CCCceE--eecccC-CCC--CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcE
Confidence            111111 111111  111110 000  112234678899999999999998887                   9999999


Q ss_pred             EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEE--eecC-c-ccccc-c
Q 005134          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVH--FLSK-D-LGDYL-L  271 (712)
Q Consensus       197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~--~~~~-~-l~~~~-~  271 (712)
                      |+.+..+++.+.....   ++    .+++|++||+|||.+|.+++.+++...... ....+.+.  +..+ + ..... .
T Consensus       131 V~~i~~~~~~v~~v~~---~~----~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~-~~~~~gvk~~~~~~~~~i~~~~~~  202 (429)
T PRK10015        131 VDALVREGNKVTGVQA---GD----DILEANVVILADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNI  202 (429)
T ss_pred             EEEEEEeCCEEEEEEe---CC----eEEECCEEEEccCcchhhhcccCCCcCCCc-CeEEEEEEEEEeCCHHHhhHhhcC
Confidence            9999877766543322   22    368999999999999999999987432211 11111211  1111 1 00000 0


Q ss_pred             cCCCceEEEEee-cCC----eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh--CCCCCcceEEEeecc
Q 005134          272 NERPGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW  344 (712)
Q Consensus       272 ~~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~--g~~~~~~~i~~~~~w  344 (712)
                      ....+.+++++. +..    .|++....   +...+.+-..-........+.....+.+.+..  ......-+.......
T Consensus       203 ~~~~g~~w~~~g~~~~g~~g~G~~~~~~---d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~  279 (429)
T PRK10015        203 TGEEGAAWLFAGSPSDGLMGGGFLYTNK---DSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAH  279 (429)
T ss_pred             CCCCCeEEEecCccCCCCCCceEEEEcC---CcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeE
Confidence            111222222221 111    23443321   23332221100000001122232222222110  000001122221111


Q ss_pred             eech---hhhccccccCCcEEEEccCCccCC--CCCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhH
Q 005134          345 VMHA---EVAEKFLCCYNQIILAGDACHRFP--PAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKP  415 (712)
Q Consensus       345 ~~~~---~va~~~~~~~gRV~LvGDAAH~~~--P~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp  415 (712)
                      .+..   ...++..  .++++||||||..++  |+.|.||+.||..+...|..+...+. +.-+...|..|++.-+.
T Consensus       280 ~ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~  354 (429)
T PRK10015        280 MVPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQ  354 (429)
T ss_pred             EcccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence            1110   1123333  489999999999998  56999999999999999999988775 44456778999976554

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.89  E-value=1.8e-20  Score=208.03  Aligned_cols=331  Identities=16%  Similarity=0.199  Sum_probs=178.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc---cc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL---WR  116 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~---~~  116 (712)
                      ..++||+||||||+|+++|+.|+++|++|+||||.+.+.... .+..+...+++.+  ++.+.    .. .+.+.   ..
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~   75 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE   75 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence            456999999999999999999999999999999998775433 3444555554433  11111    11 11110   01


Q ss_pred             eeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (712)
Q Consensus       117 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~  196 (712)
                      .+.+. ...+..  .++.......   ..+...+.+.|..|++.|.+.+.+.|+                   +++.+++
T Consensus        76 ~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~  130 (428)
T PRK10157         76 KLAFM-TEKSAM--TMDYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR  130 (428)
T ss_pred             eEEEE-cCCCce--eecccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence            11111 111211  1111111000   112234567899999999999999887                   9999999


Q ss_pred             EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEe--ecCc--cc-cccc
Q 005134          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF--LSKD--LG-DYLL  271 (712)
Q Consensus       197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~--~~~~--l~-~~~~  271 (712)
                      |++++.+++.+.....   ++.    +++|++||+|||.+|.+++++|+...-. .....+.+..  ..+.  .. .+..
T Consensus       131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~  202 (428)
T PRK10157        131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL  202 (428)
T ss_pred             EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence            9999887776543221   332    6899999999999999999998753211 1111121111  1110  00 0111


Q ss_pred             cCCCceEEEEee-cCC----eEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCcceEEEeecc
Q 005134          272 NERPGMLFFIFN-TEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW  344 (712)
Q Consensus       272 ~~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~--~~~~~i~~~~~w  344 (712)
                      ....+..+++.. +..    .|++...   .....+.+-...........+.+...+.+.+.....  ...-+......+
T Consensus       203 ~~~~g~~~~~~g~~~~g~~ggG~~~~~---~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~  279 (428)
T PRK10157        203 QGNQGAACLFAGSPTDGLMGGGFLYTN---ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH  279 (428)
T ss_pred             CCCCCeEEEEEECCCCCCcCceeEEEc---CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence            112233322222 211    2333321   122322221111100001122333333332211000  000011111111


Q ss_pred             eec---hhhhccccccCCcEEEEccCCccCCC--CCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhHH
Q 005134          345 VMH---AEVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI  416 (712)
Q Consensus       345 ~~~---~~va~~~~~~~gRV~LvGDAAH~~~P--~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp~  416 (712)
                      .+.   ....+++.  .+++++|||||..++|  +.|.|++.||..+..+|..+.+.++ +......|..|++.=+..
T Consensus       280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~  355 (428)
T PRK10157        280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG  355 (428)
T ss_pred             HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence            110   01122333  4899999999999998  5899999999999999999988775 333556899999654443

>PLN02697 lycopene epsilon cyclase

Probab=99.87  E-value=3.1e-19  Score=200.31  Aligned_cols=314  Identities=17%  Similarity=0.280  Sum_probs=178.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ...+||+||||||+||++|+.|++.|++|+|||+....   ++..+++.   ..+..+ |+.+.+...      |.....
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~~------w~~~~v  172 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEHV------WRDTIV  172 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHhh------cCCcEE
Confidence            44589999999999999999999999999999986322   22334443   456777 876655432      111111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      +.. .+..+.              .......+.|..|.+.|.+++.+.|+                   ++ ++++|+++
T Consensus       173 ~~~-~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I  217 (529)
T PLN02697        173 YLD-DDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI  217 (529)
T ss_pred             Eec-CCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence            111 111110              01112368899999999999988776                   66 67899999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc-cccccEEEEEeecCccccccccCCCceEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++++++.+.+.  .+|    .+++|++||+|||++|.  +.++....+. ...+....+.+...... +  ... .+.+
T Consensus       218 ~~~~~~~~vv~~--~dG----~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~-~--d~~-~~vl  285 (529)
T PLN02697        218 TEASDGLRLVAC--EDG----RVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNP-Y--DPS-LMVF  285 (529)
T ss_pred             EEcCCcEEEEEE--cCC----cEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCC-C--Ccc-hhee
Confidence            888777654433  234    26899999999999993  2333221111 22333444433321110 1  111 1111


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCC--------CCCCHHHHHHHHHHHh---CCCCCcceEEEeecceech
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL--------EDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHA  348 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~  348 (712)
                      +-+......-.-..+...-.|.|.+|+.+.....        ...+.+.+++.+.+.+   |.....+........++..
T Consensus       286 MD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g  365 (529)
T PLN02697        286 MDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGG  365 (529)
T ss_pred             eccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCC
Confidence            1111000000000000011344444443321111        1234455555555544   3332222222222334433


Q ss_pred             hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC----------CchhhHHHHHHhhhHHHH
Q 005134          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERKPIAE  418 (712)
Q Consensus       349 ~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~----------a~~~lL~sY~~eRrp~a~  418 (712)
                      .. +..   .++++++||||..++|.+|+|+..++.+|..+|..++..++..          .....+..|+........
T Consensus       366 ~~-~~~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~  441 (529)
T PLN02697        366 SL-PNT---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK  441 (529)
T ss_pred             CC-ccc---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence            22 223   3799999999999999999999999999999999999998533          235678888776555443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.85  E-value=9.9e-20  Score=197.90  Aligned_cols=298  Identities=12%  Similarity=0.181  Sum_probs=160.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCC--ccccceeEe
Q 005134           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP--VDLWRKFIY  120 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~--~~~~~~~~~  120 (712)
                      ||+|||||++||++|+.|++.  |++|+|+|+.+.....        ++.-.+ .. ++.+.+...-.+  ...|.....
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~--------~tw~~~-~~-~~~~~~~~~~~~~v~~~W~~~~v   70 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN--------HTWSFF-DS-DLSDAQHAWLADLVQTDWPGYEV   70 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc--------ccceec-cc-ccchhhhhhhhhhheEeCCCCEE
Confidence            799999999999999999987  9999999998643211        111111 11 222211110000  011222111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ....               ... .-+.....+.+.+|.+.|.+.+..                      .++++++|+++
T Consensus        71 ~~~~---------------~~~-~l~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v  112 (370)
T TIGR01789        71 RFPK---------------YRR-KLKTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL  112 (370)
T ss_pred             ECcc---------------hhh-hcCCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence            1100               000 001234578888999888765432                      36778899988


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE-E
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML-F  279 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~  279 (712)
                        +.++|+  +.   +|.    +++|++||+|||.+|..-..        ..+++++.+..+...  .+ ....+..+ +
T Consensus       113 --~~~~v~--l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~--p~-~~~~~~lMD~  170 (370)
T TIGR01789       113 --DADGVD--LA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQE--PH-GLENPIIMDA  170 (370)
T ss_pred             --eCCEEE--EC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcC--CC-CCCccEEEee
Confidence              345544  33   453    68999999999999852211        234555555444321  11 11111111 1


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCcceEEEeecceechh--hhccc
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE--VAEKF  354 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~~~~--va~~~  354 (712)
                      .+-..+...+++..+..+++..+.-++..+   ....+.+...+.+++.+   |.....+........++...  ....+
T Consensus       171 ~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~---~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~  247 (370)
T TIGR01789       171 TVDQLAGYRFVYVLPLGSHDLLIEDTYYAD---DPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQ  247 (370)
T ss_pred             eccCCCCceEEEECcCCCCeEEEEEEeccC---CCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCccccc
Confidence            111122223333344444444433221111   12334555555555443   43333332222222333221  12122


Q ss_pred             cccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHH
Q 005134          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE  418 (712)
Q Consensus       355 ~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~  418 (712)
                      .. .++|+++|||||.++|..|||+|.+++||..|+..+.  +++.....++..|..+|+++..
T Consensus       248 ~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~  308 (370)
T TIGR01789       248 DE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAAFIDSRARRHWSKTG  308 (370)
T ss_pred             cc-CCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhhhhhHHHHHHHHHhH
Confidence            22 3679999999999999999999999999999988773  1232234557899988888775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02463 lycopene beta cyclase

Probab=99.84  E-value=1.8e-18  Score=191.45  Aligned_cols=296  Identities=16%  Similarity=0.211  Sum_probs=168.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ...+||+||||||+||++|+.|+++|++|+|||+++.. ..|+...+.   .+.|+.+ |+.+.+......     ...+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~-~~p~~~g~w---~~~l~~l-gl~~~l~~~w~~-----~~v~   95 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS-IWPNNYGVW---VDEFEAL-GLLDCLDTTWPG-----AVVY   95 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc-hhccccchH---HHHHHHC-CcHHHHHhhCCC-----cEEE
Confidence            44589999999999999999999999999999997643 223332222   3567777 888776543211     1112


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ...  +...              ........++|.+|.+.|++++.+.|+                   +++ ..+|+++
T Consensus        96 ~~~--~~~~--------------~~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I  139 (447)
T PLN02463         96 IDD--GKKK--------------DLDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV  139 (447)
T ss_pred             EeC--CCCc--------------cccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence            111  1000              001123457899999999999988776                   665 4689999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      ++++++++|++.   +|.    +++||+||+|||.+|.+++.-.   .....++....+....... .+  .. ..+.++
T Consensus       140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~-p~--d~-~~~vlM  205 (447)
T PLN02463        140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSH-PF--DL-DKMLFM  205 (447)
T ss_pred             EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCC-Cc--cc-ccchhh
Confidence            998888777664   452    7999999999999999875321   1122333333322221110 00  00 001110


Q ss_pred             EeecCCeEE---EEEecCCCCeEEEEEecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCcceEEEeeccee
Q 005134          281 IFNTEAIGV---LVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVM  346 (712)
Q Consensus       281 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~e~~~~~i~~~~---g~~~~~~~i~~~~~w~~  346 (712)
                      -+.....+-   +...+...-.|.+.+|+.+...        .....+.+.+++.+.+.+   |....++........++
T Consensus       206 D~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPm  285 (447)
T PLN02463        206 DWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPM  285 (447)
T ss_pred             hcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeC
Confidence            000000000   0000000012333344322210        112234455555555443   33222221111122233


Q ss_pred             chhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 005134          347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI  400 (712)
Q Consensus       347 ~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~  400 (712)
                      .. ..+.+   .+||+++||||..++|..|.|+-.++..+..+|..++..++..
T Consensus       286 g~-~~~~~---~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~  335 (447)
T PLN02463        286 GG-PLPVI---PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSS  335 (447)
T ss_pred             CC-CCCCC---CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            22 12233   3799999999999999999999999999999999999988643

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.83  E-value=8.3e-19  Score=179.44  Aligned_cols=350  Identities=19%  Similarity=0.184  Sum_probs=208.0

Q ss_pred             cCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCC
Q 005134           31 LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP  110 (712)
Q Consensus        31 ~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~  110 (712)
                      +.+.....++...+||+|||||.+|.++|..|+|.|-+|+||||.-.-..+--+..++|.+...|.+| ||.|.++..-.
T Consensus        33 ~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~IDA  111 (509)
T KOG1298|consen   33 VAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGIDA  111 (509)
T ss_pred             cchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhcccc
Confidence            33344445567789999999999999999999999999999999977666666889999999999999 99999976542


Q ss_pred             CccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccce
Q 005134          111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (712)
Q Consensus       111 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (712)
                      ...    .-|....+|++.. +.++ ..++..   ......+.-.+|.+-|++.+...+.                  ++
T Consensus       112 Q~v----~Gy~ifk~gk~v~-~pyP-~~~f~~---d~~GrsFhnGRFvq~lR~ka~slpN------------------V~  164 (509)
T KOG1298|consen  112 QRV----TGYAIFKDGKEVD-LPYP-LKNFPS---DPSGRSFHNGRFVQRLRKKAASLPN------------------VR  164 (509)
T ss_pred             eEe----eeeEEEeCCceee-ccCC-CcCCCC---CcccceeeccHHHHHHHHHHhcCCC------------------eE
Confidence            211    1111112444432 2222 112221   1113345566788889998877653                  45


Q ss_pred             EEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (712)
Q Consensus       191 v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  270 (712)
                      +..|+ |.++-++++ +..-++.++.+ +++.+..|-+-|.|||..|.+||.|--+.. ......++.......++.   
T Consensus       165 ~eeGt-V~sLlee~g-vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~~~v-~~V~S~fVG~vl~N~~l~---  237 (509)
T KOG1298|consen  165 LEEGT-VKSLLEEEG-VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLRRSLCDPKV-EEVPSYFVGLVLKNCRLP---  237 (509)
T ss_pred             Eeeee-HHHHHhccC-eEEeEEEecCC-CceEEEecceEEEecchhHHHHHHhcCCcc-cccchheeeeeecCCCCC---
Confidence            55554 334433333 32233322222 235688999999999999999999843221 113333444333332321   


Q ss_pred             ccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCC----------------HHHHHHHHHHHhCCCCC
Q 005134          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS----------------PEICEKLIFKLVGWELS  334 (712)
Q Consensus       271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~~~~i~~~~g~~~~  334 (712)
                         .+...+.++......+++.....+-+..+.+|  .+  +.....                ++.+++.+.+.+...  
T Consensus       238 ---~p~hghvIL~~pspil~Y~ISStEvRcl~~v~--g~--~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g--  308 (509)
T KOG1298|consen  238 ---APNHGHVILSKPSPILVYQISSTEVRCLVDVP--GQ--KLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEG--  308 (509)
T ss_pred             ---CCCcceEEecCCCcEEEEEecchheEEEEecC--cc--cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhcc--
Confidence               23334445543334444444333223333222  11  111111                122333333332211  


Q ss_pred             cceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc---CCCchhhHHHHHH
Q 005134          335 DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYET  411 (712)
Q Consensus       335 ~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~---g~a~~~lL~sY~~  411 (712)
                      .++.+     +.....+....  ...++|+|||-..-+|..|.||..++.|+..|-.+|.-..+   ...-...+.+|..
T Consensus       309 ~irsm-----pn~~mpa~~~~--~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~  381 (509)
T KOG1298|consen  309 NIRSM-----PNSSMPATLND--KKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYW  381 (509)
T ss_pred             chhcC-----ccccCCCCcCC--CCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence            11111     11222233332  47899999999999999999999999999999988865321   1112356789999


Q ss_pred             hhhHHHHHHHHHHHHHHHHh
Q 005134          412 ERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       412 eRrp~a~~~~~~s~~~~~~~  431 (712)
                      +|+|....+.-++..-++.+
T Consensus       382 ~RKp~s~tINtLa~Aly~vf  401 (509)
T KOG1298|consen  382 IRKPYSATINTLANALYQVF  401 (509)
T ss_pred             hhcchhHHHHHHHHHHHHHh
Confidence            99998877766666555544

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.80  E-value=1.3e-17  Score=185.73  Aligned_cols=333  Identities=17%  Similarity=0.238  Sum_probs=182.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHH--HHhcCCCcccccee-
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVDLWRKF-  118 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~--l~~~~~~~~~~~~~-  118 (712)
                      ||+|||||++|.++|..|++.+   ++|+|||+...+.... +....|....+++.| ||.+.  +.+.....+.-..| 
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~v-Ge~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~   78 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGV-GESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV   78 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SS-EEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCc-cccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence            6999999999999999999999   9999999998775544 556677777899999 99877  55554332221111 


Q ss_pred             -------EeeecC--CCCeeeeecC----------CCcc---------------ccccc-----cCCccccccChhHHHH
Q 005134          119 -------IYCTSV--TGPILGSVDH----------MQPQ---------------DFEKV-----VSPVSVAHFSQYKLNK  159 (712)
Q Consensus       119 -------~~~~~~--~G~~l~~~~~----------~~~~---------------~~~~~-----~~p~~~~~i~q~~Le~  159 (712)
                             .+.+..  .|..+...+.          ....               .+...     ..-...++++|.+|++
T Consensus        79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~  158 (454)
T PF04820_consen   79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ  158 (454)
T ss_dssp             SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred             ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence                   111111  1111111100          0000               00000     0112347899999999


Q ss_pred             HHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      .|++.+.+.|+                   +++.++ |+.++.++++....+... +|    .+++|||||+|+|.+|.+
T Consensus       159 ~L~~~A~~~Gv-------------------~~~~g~-V~~v~~~~~g~i~~v~~~-~g----~~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  159 FLRRHAEERGV-------------------EVIEGT-VVDVELDEDGRITAVRLD-DG----RTIEADFFIDASGRRSLL  213 (454)
T ss_dssp             HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET-TS----EEEEESEEEE-SGGG-CC
T ss_pred             HHHHHHhcCCC-------------------EEEeCE-EEEEEEcCCCCEEEEEEC-CC----CEEEEeEEEECCCccchh
Confidence            99999999998                   787774 788888777754455532 34    379999999999999998


Q ss_pred             hcc-cCCCcccccccc---cEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCC
Q 005134          240 RKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLED  315 (712)
Q Consensus       240 R~~-lgi~~~g~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (712)
                      .++ |+.++.......   ..+.+.....+      ...+... ....+.++.+.++...+.+.   ..-+..     ..
T Consensus       214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~-~~a~~~GW~W~IPL~~~~~~---G~V~s~-----~~  278 (454)
T PF04820_consen  214 ARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTR-STAFEAGWIWYIPLQNRRGS---GYVYSS-----DF  278 (454)
T ss_dssp             CCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEE-EEEESSEEEEEEEESSEEEE---EEEEET-----TT
T ss_pred             hHhhhcCCCccccccccccEEEEEecCcCC------CCCCcee-EEecCCceEEEccCCCcceE---EEEecc-----cc
Confidence            777 444433222111   11222221111      1112222 22223333444444322111   111111     12


Q ss_pred             CCHHHHHHHHHHHhCCCCCcc-eEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHH
Q 005134          316 FSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA  394 (712)
Q Consensus       316 ~~~e~~~~~i~~~~g~~~~~~-~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa  394 (712)
                      .+++...+.+.+.++...... ..+...     ....+++.  .+++++|||||..++|..+.|+.+++..+..|+..|.
T Consensus       279 ~s~~~A~~~l~~~l~~~~~~~~~~i~~~-----~g~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~  351 (454)
T PF04820_consen  279 ISDDEAEAELLAYLGGSPEAEPRHIRFR-----SGRRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP  351 (454)
T ss_dssp             SHHHHHHHHHHHHHTCHCTTSCEEEE-S------EEESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHhcchhhhcchhhhccc-----ccchhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc
Confidence            244555555555555332111 222211     11133443  3899999999999999999999999997777666654


Q ss_pred             HHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       395 ~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                         .+...+.+++.|++.-+...+.+.+.-...|.
T Consensus       352 ---~~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~  383 (454)
T PF04820_consen  352 ---DDDFSPAALDRYNRRMRREYERIRDFISLHYQ  383 (454)
T ss_dssp             ---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               34445889999999988888877776655554

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.76  E-value=3.5e-16  Score=170.77  Aligned_cols=281  Identities=16%  Similarity=0.275  Sum_probs=158.5

Q ss_pred             CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~L--ar~Gi~v~lvEr~~~~~-~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ||+||||||+||++|..|  ++.|.+|+|||+++... ...+...+..      ..+ +..+.+....     |......
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~------~~~-~~~~~~v~~~-----w~~~~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWE------KDL-GPLDSLVSHR-----WSGWRVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccc------ccc-cchHHHHhee-----cCceEEE
Confidence            899999999999999999  88899999999987651 1111111111      111 2112222221     2211111


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                      .. .+...              .....+..+.+.+|.+.|.+++. .+.                   .++++.+|++++
T Consensus        69 ~~-~~~~~--------------~~~~~Y~~i~~~~f~~~l~~~~~-~~~-------------------~~~~~~~V~~i~  113 (374)
T PF05834_consen   69 FP-DGSRI--------------LIDYPYCMIDRADFYEFLLERAA-AGG-------------------VIRLNARVTSIE  113 (374)
T ss_pred             eC-CCceE--------------EcccceEEEEHHHHHHHHHHHhh-hCC-------------------eEEEccEEEEEE
Confidence            11 11100              01123457899999999999988 443                   678899999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE-
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF-  280 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  280 (712)
                      .+++++.+++.   +|.    +++|++||+|+|..|...+..        .+++++.+...... ..+ ....+..+-| 
T Consensus       114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~-~~f-~~~~~~lMD~r  176 (374)
T PF05834_consen  114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDE-PVF-DPDTATLMDFR  176 (374)
T ss_pred             ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccC-CCC-CCCceEEEEec
Confidence            99987666654   453    799999999999777622222        23444444333321 101 0111111111 


Q ss_pred             Eeec-CCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHH---hCCCCCcceEEEeecceec-hhhhcccc
Q 005134          281 IFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMH-AEVAEKFL  355 (712)
Q Consensus       281 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~---~g~~~~~~~i~~~~~w~~~-~~va~~~~  355 (712)
                      .-+. +...+++..+...++..+...+..+.   ...+.+.+++.+++.   .|....++.-......+|. ......+ 
T Consensus       177 ~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~---~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~-  252 (374)
T PF05834_consen  177 VPQSADGPSFLYVLPFSEDRALVEETSFSPR---PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRF-  252 (374)
T ss_pred             ccCCCCCceEEEEEEcCCCeEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCcccc-
Confidence            1111 22334444444444444322211111   123445555555444   4544333322223334552 1222333 


Q ss_pred             ccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHH
Q 005134          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS  395 (712)
Q Consensus       356 ~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~  395 (712)
                        .++|+.+|+||..+.|.+|+++-.++..+..+|..|+.
T Consensus       253 --~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  253 --GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             --CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence              37899999999999999999999999888888877764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.36  E-value=4.6e-12  Score=130.56  Aligned_cols=144  Identities=19%  Similarity=0.282  Sum_probs=96.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--Cce-----eecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQA-----HFINNRYALVFRKLDGLAEEIERSQPPVD  113 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--~ra-----~~i~~rtmeilr~l~Gl~d~l~~~~~~~~  113 (712)
                      ..++||+||||||+||++|+.|++.|++|+|+||+..+...  ..+     ..+....+++|+++ |+         +..
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~-gv---------~~~   92 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF-GI---------RYK   92 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC-CC---------Cce
Confidence            45689999999999999999999999999999998765321  111     11222333334333 32         110


Q ss_pred             ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (712)
Q Consensus       114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  193 (712)
                      .                 .             ....+.+++..+...|.+.+.+.|+                   ++++
T Consensus        93 ~-----------------~-------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~  123 (257)
T PRK04176         93 E-----------------V-------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN  123 (257)
T ss_pred             e-----------------e-------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence            0                 0             0001245677888999999998887                   9999


Q ss_pred             CcEEEEEEEcCC-eEE-EEEEec---cCC-ceeeEEEEecEEEeccCCCchhhccc
Q 005134          194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (712)
Q Consensus       194 g~~v~~v~~~~~-~v~-v~v~~~---~~g-~~~~~~i~ad~VVgADG~~S~VR~~l  243 (712)
                      +++++++..+++ .+. +.+...   ..+ .....+++|++||.|+|.+|.+.+.+
T Consensus       124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence            999999987665 332 111110   011 01135899999999999999998876

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.29  E-value=6.2e-11  Score=120.22  Aligned_cols=189  Identities=20%  Similarity=0.168  Sum_probs=111.6

Q ss_pred             ecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEe
Q 005134          226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP  305 (712)
Q Consensus       226 ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  305 (712)
                      |.+.|.|||..|.+|+++..  .......+++........+      ..+...+.+.......+++.....+.+..+-+|
T Consensus         2 A~LtivaDG~~S~fRk~l~~--~~~~v~S~fvGl~l~~~~l------p~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp   73 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSD--NKPQVRSYFVGLILKDAPL------PKPNHGHVILGKPGPILLYQISSNETRVLVDVP   73 (276)
T ss_pred             CCEEEEecCCchHHHHhhcC--CCCceeeeEEEEEEcCCCC------CCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence            68999999999999999872  2233344455444433322      123444555555555555555544444444444


Q ss_pred             cC-CCCCCCCCC-----------CHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCC
Q 005134          306 FY-PPQQNLEDF-----------SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP  373 (712)
Q Consensus       306 ~~-~~~~~~~~~-----------~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P  373 (712)
                      .. .+...-.++           -++.+++.+.+.+...  .+..     .+.....+....  ...++++|||++..+|
T Consensus        74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~--rirs-----MPn~~lp~~~~~--~~G~vllGDA~nmrHP  144 (276)
T PF08491_consen   74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDG--RIRS-----MPNSFLPASPNW--KPGVVLLGDAANMRHP  144 (276)
T ss_pred             CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccC--Ccce-----ecccccCCCCCC--CCCEEEEehhhcCcCC
Confidence            22 111000000           0122222223332221  2221     112222222332  3689999999999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHH--HcCC-CchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          374 AGGFGMNTGVQDAHNLAWKIASV--LKDI-APASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       374 ~gG~G~n~gi~DA~~LawkLa~v--l~g~-a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      .+|+||+.|+.|+..|+..|...  +.+. +-.+.+++|+.+|++....+.-+|..-|..+
T Consensus       145 LTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF  205 (276)
T PF08491_consen  145 LTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLF  205 (276)
T ss_pred             ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            99999999999999999999876  2222 2356899999999999887766776666554

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.29  E-value=2.7e-11  Score=124.48  Aligned_cols=143  Identities=19%  Similarity=0.276  Sum_probs=93.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ce-----eecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~--ra-----~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~  114 (712)
                      .++||+||||||+||++|+.|+++|++|+|+||+..+....  .+     ..+...+.++++++ |+         +...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~-gi---------~~~~   89 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF-GI---------RYED   89 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC-CC---------Ceee
Confidence            46899999999999999999999999999999998653111  11     11122233333333 22         1000


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                                .+                    ......++..+...|.+++.+.|+                   +++++
T Consensus        90 ----------~~--------------------~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~  120 (254)
T TIGR00292        90 ----------EG--------------------DGYVVADSAEFISTLASKALQAGA-------------------KIFNG  120 (254)
T ss_pred             ----------cc--------------------CceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence                      00                    001223556788889999988887                   99999


Q ss_pred             cEEEEEEEcCCe--EEEEEEec----cCCc-eeeEEEEecEEEeccCCCchhhccc
Q 005134          195 HECVSVSATDQC--INVIASFL----KEGK-CTERNIQCNILIGTDGAGSTVRKLV  243 (712)
Q Consensus       195 ~~v~~v~~~~~~--v~v~v~~~----~~g~-~~~~~i~ad~VVgADG~~S~VR~~l  243 (712)
                      +++.++..+++.  |.-.+...    ..|. ....+++|++||.|+|..|.+.+.+
T Consensus       121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence            999999887763  32222110    0110 1136899999999999999877655

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.17  E-value=2e-09  Score=118.14  Aligned_cols=71  Identities=24%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-..+.+.|.+.+.+.|+                   +++++++|++++.+++.+++++.   ++     ++++|.||
T Consensus       141 ~i~p~~~~~~l~~~~~~~g~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV  193 (380)
T TIGR01377       141 VLYAEKALRALQELAEAHGA-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLV  193 (380)
T ss_pred             EEcHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEE
Confidence            34455777788888888776                   89999999999988777665432   33     58899888


Q ss_pred             eccCCC-chhhcccCCCcc
Q 005134          231 GTDGAG-STVRKLVGIDLV  248 (712)
Q Consensus       231 gADG~~-S~VR~~lgi~~~  248 (712)
                      .|.|.. |.+++.+|+...
T Consensus       194 ~aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       194 VTAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             EecCcchHHHhhhcccCCC
Confidence            888875 778888876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.11  E-value=2.3e-10  Score=120.32  Aligned_cols=161  Identities=22%  Similarity=0.275  Sum_probs=96.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHh-HHHHHHhhhcHHHHHHhcCCCcc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNR-YALVFRKLDGLAEEIERSQPPVD  113 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~r-tmeilr~l~Gl~d~l~~~~~~~~  113 (712)
                      |+.+||+||||||+||.+|+.++++|.+|+|||+.+.+-.      .+|....|.. .-+++.+.+|=...++..-....
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence            3568999999999999999999999999999999987633      2333333322 22334443211111111000000


Q ss_pred             ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (712)
Q Consensus       114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  193 (712)
                      .+..+.|+ ...|-.+..-+..      + .-|   ..-.-..+.+.|+.++++.|+                   +|+.
T Consensus        81 ~~d~i~~~-e~~Gi~~~e~~~G------r-~Fp---~sdkA~~Iv~~ll~~~~~~gV-------------------~i~~  130 (408)
T COG2081          81 PEDFIDWV-EGLGIALKEEDLG------R-MFP---DSDKASPIVDALLKELEALGV-------------------TIRT  130 (408)
T ss_pred             HHHHHHHH-HhcCCeeEEccCc------e-ecC---CccchHHHHHHHHHHHHHcCc-------------------EEEe
Confidence            00000010 0111111110000      0 000   011234577888999999987                   9999


Q ss_pred             CcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       194 g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++.+++.++++..+...   +|+    +|+||-||.|-|..|.
T Consensus       131 ~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S~  168 (408)
T COG2081         131 RSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKSW  168 (408)
T ss_pred             cceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcCC
Confidence            9999999999877666654   453    7999999999999884

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.09  E-value=4.7e-09  Score=118.13  Aligned_cols=119  Identities=16%  Similarity=0.149  Sum_probs=72.3

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++-..+...|.+.+.+.|+                   +++++++|++++.+++ ++++++...++|+  ..+++|++|
T Consensus       174 ~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~--~~~i~A~~V  232 (483)
T TIGR01320       174 DVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTGG--KRTLNTRFV  232 (483)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCCc--eEEEECCEE
Confidence            45667788888888888887                   9999999999998654 5666654333342  246899999


Q ss_pred             EeccCC-CchhhcccCCCc-ccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEe
Q 005134          230 IGTDGA-GSTVRKLVGIDL-VGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAH  293 (712)
Q Consensus       230 VgADG~-~S~VR~~lgi~~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~  293 (712)
                      |.|-|. .+.+++.+|+.. .+... ..+...++... ..... ....+.+|..-+|+...+.++|
T Consensus       233 V~AAG~~s~~La~~~Gi~~~~~~~i-~P~~Gq~l~l~-~~~~~-~~~~~~IY~v~~p~~p~~~Vph  295 (483)
T TIGR01320       233 FVGAGGGALPLLQKSGIPEVKGFAG-FPVSGLFLRCG-NPELT-EQHRAKVYGQASVGAPPMSVPH  295 (483)
T ss_pred             EECCCcchHHHHHHcCCCcCCCCce-eeeeEEEEEeC-CHHHH-hhcCeEEEecCCCCCCCcEEec
Confidence            555554 567888888874 22222 22222333321 11111 1234567777777654444433

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.08  E-value=4.4e-08  Score=111.36  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      ++-..|...|.+.+.+.|+                   +++.+++|+++..+++.+.+++.+..+|+  ..+|+|++||.
T Consensus       152 vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g~--~~~i~a~~VVn  210 (508)
T PRK12266        152 VDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATGK--RYTVRARALVN  210 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCCC--EEEEEcCEEEE
Confidence            4456666677777777787                   99999999999888777777766433443  46799999999


Q ss_pred             ccCCCch-hhc-ccCC
Q 005134          232 TDGAGST-VRK-LVGI  245 (712)
Q Consensus       232 ADG~~S~-VR~-~lgi  245 (712)
                      |.|++|. +.+ .+|+
T Consensus       211 AaG~wa~~l~~~~~g~  226 (508)
T PRK12266        211 AAGPWVKQFLDDGLGL  226 (508)
T ss_pred             CCCccHHHHHhhccCC
Confidence            9999874 444 3354

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.05  E-value=4.7e-09  Score=119.33  Aligned_cols=73  Identities=21%  Similarity=0.217  Sum_probs=55.9

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++..+|...|...+.+.|+                   +++.+++|+++..+++.+.+++.+.. |  ++.+++|++||
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~-g--~~~~i~a~~VV  208 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGA-------------------TILTRTRCVSARREGGLWRVETRDAD-G--ETRTVRARALV  208 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEEeCC-C--CEEEEEecEEE
Confidence            45667788888888888887                   99999999999988777777665322 3  35689999999


Q ss_pred             eccCCCch-hhc-ccCC
Q 005134          231 GTDGAGST-VRK-LVGI  245 (712)
Q Consensus       231 gADG~~S~-VR~-~lgi  245 (712)
                      .|+|++|. +.+ .+|.
T Consensus       209 nAaG~wa~~l~~~~~g~  225 (502)
T PRK13369        209 NAAGPWVTDVIHRVAGS  225 (502)
T ss_pred             ECCCccHHHHHhhccCC
Confidence            99999974 444 3354

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.4e-09  Score=103.20  Aligned_cols=142  Identities=18%  Similarity=0.268  Sum_probs=91.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCc-----eeecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--~~r-----a~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~  114 (712)
                      .+.||+||||||+||++|+.|++.|++|+||||+-.+--  .+.     ...+...+-++|+++ |+.         .+.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~   98 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE   98 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence            468999999999999999999999999999999987632  222     234555666777776 552         110


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                      ..        .|                      .+..+-..+...|..++-+.|.                   +|.-+
T Consensus        99 ~e--------~g----------------------~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~  129 (262)
T COG1635          99 EE--------DG----------------------YYVADSAEFASKLAARALDAGA-------------------KIFNG  129 (262)
T ss_pred             cC--------Cc----------------------eEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence            00        00                      1122334566667777778887                   77777


Q ss_pred             cEEEEEEEcCC-eEEEEEEec----cCCc-eeeEEEEecEEEeccCCCchhhcc
Q 005134          195 HECVSVSATDQ-CINVIASFL----KEGK-CTERNIQCNILIGTDGAGSTVRKL  242 (712)
Q Consensus       195 ~~v~~v~~~~~-~v~v~v~~~----~~g~-~~~~~i~ad~VVgADG~~S~VR~~  242 (712)
                      +.|..+...++ +|.-.+.+=    ..+. --+.++++++||.|.|-...|-+.
T Consensus       130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~  183 (262)
T COG1635         130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF  183 (262)
T ss_pred             ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHH
Confidence            77777766555 443222110    0000 013579999999999987665443

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.02  E-value=5e-09  Score=115.58  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-..+...|.+.+++.|+                   +++++++|++++.+++++.+...   ++     +++||.||
T Consensus       145 ~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~vV  197 (393)
T PRK11728        145 IVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTLI  197 (393)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEEE
Confidence            44567788888888888887                   89999999999888777654432   33     58999999


Q ss_pred             eccCCCch-hhcccCCC
Q 005134          231 GTDGAGST-VRKLVGID  246 (712)
Q Consensus       231 gADG~~S~-VR~~lgi~  246 (712)
                      .|+|.+|. +.+.+|++
T Consensus       198 ~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        198 NCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             ECCCcchHHHHHHhCCC
Confidence            99999984 56666653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.00  E-value=8.6e-09  Score=100.26  Aligned_cols=143  Identities=18%  Similarity=0.261  Sum_probs=85.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--C-----ceeecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--P-----QAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--~-----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~  113 (712)
                      ..++||+||||||+||++|+.|++.|++|+||||+..+-..  .     ....+...+.++|+++ |+.         .+
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~---------y~   84 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIP---------YE   84 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Cce---------eE
Confidence            35699999999999999999999999999999999876322  1     1245556677888887 652         10


Q ss_pred             ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEe
Q 005134          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (712)
Q Consensus       114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  193 (712)
                      ..          ++                    ..+..+-..+...|..++-+.|+                   +|.-
T Consensus        85 ~~----------~~--------------------g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn  115 (230)
T PF01946_consen   85 EY----------GD--------------------GYYVADSVEFTSTLASKAIDAGA-------------------KIFN  115 (230)
T ss_dssp             E-----------SS--------------------EEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred             Ee----------CC--------------------eEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence            00          00                    01223445666677777777776                   7777


Q ss_pred             CcEEEEEEEcC-CeEEEEEEec----cCC-ceeeEEEEecEEEeccCCCchhhcc
Q 005134          194 GHECVSVSATD-QCINVIASFL----KEG-KCTERNIQCNILIGTDGAGSTVRKL  242 (712)
Q Consensus       194 g~~v~~v~~~~-~~v~v~v~~~----~~g-~~~~~~i~ad~VVgADG~~S~VR~~  242 (712)
                      .+.|..+...+ +.|.-.+..-    ..| .--+.+|+|++||.|.|-.+.|-+.
T Consensus       116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~  170 (230)
T PF01946_consen  116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRV  170 (230)
T ss_dssp             TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSH
T ss_pred             eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHH
Confidence            88888876665 4444332210    000 0013589999999999988765443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.99  E-value=5.1e-08  Score=108.15  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      ..+...|.+.+.+.|+                   +++++++|++++.+++++++.+..  ++..+..+++||.||.|.|
T Consensus       197 ~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G  255 (410)
T PRK12409        197 HKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQP--SAEHPSRTLEFDGVVVCAG  255 (410)
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEEc--CCCCccceEecCEEEECCC
Confidence            4666777888888887                   999999999999888877766542  2110013689999999999


Q ss_pred             CCch-hhcccCC
Q 005134          235 AGST-VRKLVGI  245 (712)
Q Consensus       235 ~~S~-VR~~lgi  245 (712)
                      ++|. +.+.++.
T Consensus       256 ~~s~~l~~~~~~  267 (410)
T PRK12409        256 VGSRALAAMLGD  267 (410)
T ss_pred             cChHHHHHHhCC
Confidence            9974 4444553

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.99  E-value=3.6e-09  Score=115.90  Aligned_cols=141  Identities=23%  Similarity=0.375  Sum_probs=76.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecC----------------HhHHHHHHhhhc-
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFIN----------------NRYALVFRKLDG-  100 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~----------------~rtmeilr~l~G-  100 (712)
                      |||+||||||+||++|+.|++.|.+|+|+||++.+..      .+|....|                ......|+++ + 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence            6999999999999999999999999999999986521      12222222                1122333333 2 


Q ss_pred             --HHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcc
Q 005134          101 --LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (712)
Q Consensus       101 --l~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~  178 (712)
                        +.+-+.+.+.+...        ...|+.+                |.   .-.-..+..+|++++++.|+        
T Consensus        80 ~d~~~ff~~~Gv~~~~--------~~~gr~f----------------P~---s~~a~~Vv~~L~~~l~~~gv--------  124 (409)
T PF03486_consen   80 EDLIAFFEELGVPTKI--------EEDGRVF----------------PK---SDKASSVVDALLEELKRLGV--------  124 (409)
T ss_dssp             HHHHHHHHHTT--EEE---------STTEEE----------------ET---T--HHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHhcCCeEEE--------cCCCEEC----------------CC---CCcHHHHHHHHHHHHHHcCC--------
Confidence              22222333322210        0011100                11   11235677889999999887        


Q ss_pred             ccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       179 ~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                                 +|+++++|.+++.++++ +.+..   +++    .++.||.||-|-|..|.
T Consensus       125 -----------~i~~~~~V~~i~~~~~~~f~v~~---~~~----~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  125 -----------EIHFNTRVKSIEKKEDGVFGVKT---KNG----GEYEADAVILATGGKSY  167 (409)
T ss_dssp             -----------EEE-S--EEEEEEETTEEEEEEE---TTT----EEEEESEEEE----SSS
T ss_pred             -----------EEEeCCEeeeeeecCCceeEeec---cCc----ccccCCEEEEecCCCCc
Confidence                       99999999999998887 44443   122    37999999999998874

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.98  E-value=5e-09  Score=114.72  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +++||+|||||++|+++|+.|+++|.+|+||||...
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            358999999999999999999999999999999864

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.97  E-value=6.1e-09  Score=112.57  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=52.1

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++-..+.+.|.+.+.+.|+                   +++.+++|++++.++++++ |.+.   +|     .++||.|
T Consensus       143 ~i~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~v  195 (358)
T PF01266_consen  143 VIDPRRLIQALAAEAQRAGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRV  195 (358)
T ss_dssp             EEEHHHHHHHHHHHHHHTT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEE
T ss_pred             cccccchhhhhHHHHHHhhh-------------------hccccccccchhhccccccccccc---cc-----cccccee
Confidence            45567888889999999887                   9999999999999999976 5543   33     4999999


Q ss_pred             EeccCCCchh-hcccCC
Q 005134          230 IGTDGAGSTV-RKLVGI  245 (712)
Q Consensus       230 VgADG~~S~V-R~~lgi  245 (712)
                      |.|.|.+|.- .+.++.
T Consensus       196 V~a~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  196 VLAAGAWSPQLLPLLGL  212 (358)
T ss_dssp             EE--GGGHHHHHHTTTT
T ss_pred             Eecccccceeeeecccc
Confidence            9999999764 455555

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.95  E-value=8.7e-08  Score=106.22  Aligned_cols=36  Identities=42%  Similarity=0.573  Sum_probs=32.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~   76 (712)
                      ...+||+|||||++|+++|+.|+++ |. +|+||||..
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            5669999999999999999999995 96 899999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.95  E-value=1.2e-08  Score=110.76  Aligned_cols=181  Identities=14%  Similarity=0.207  Sum_probs=100.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCC---ce------eecCHhHH--HHHHhhh-cHHHHHHh
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP---QA------HFINNRYA--LVFRKLD-GLAEEIER  107 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~~~---ra------~~i~~rtm--eilr~l~-Gl~d~l~~  107 (712)
                      +++||+|||||++|+++|..|++++  ++|+|+||...+..+.   .+      ....+.++  ++...-. -..+-..+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999  9999999998763221   11      11122211  1111100 00111111


Q ss_pred             cCCCccccceeEeeecCCC-------------CeeeeecCCCcc---cccc---------ccCCccccccChhHHHHHHH
Q 005134          108 SQPPVDLWRKFIYCTSVTG-------------PILGSVDHMQPQ---DFEK---------VVSPVSVAHFSQYKLNKLLL  162 (712)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G-------------~~l~~~~~~~~~---~~~~---------~~~p~~~~~i~q~~Le~~L~  162 (712)
                      .+.+......+...++...             ..+.........   ..+.         ...|. ...++-..+...|.
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~-~giV~~~~~t~~l~  160 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS-GGIVDPGELTRALA  160 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC-CceEcHHHHHHHHH
Confidence            2222211112222211100             000000000000   0110         11122 22344566777888


Q ss_pred             HHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch-hhc
Q 005134          163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK  241 (712)
Q Consensus       163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-VR~  241 (712)
                      +.+...|+                   +++++++|+.++..++++++...  .+|+  +. ++|++||.|-|..|- +-+
T Consensus       161 e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~--~~g~--~~-~~ak~Vin~AGl~Ad~la~  216 (429)
T COG0579         161 EEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNT--SNGE--ET-LEAKFVINAAGLYADPLAQ  216 (429)
T ss_pred             HHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEe--cCCc--EE-EEeeEEEECCchhHHHHHH
Confidence            88888887                   99999999999999997544433  3453  22 999999999998864 667


Q ss_pred             ccCCCc
Q 005134          242 LVGIDL  247 (712)
Q Consensus       242 ~lgi~~  247 (712)
                      ..|++.
T Consensus       217 ~~g~~~  222 (429)
T COG0579         217 MAGIPE  222 (429)
T ss_pred             HhCCCc
Confidence            777665

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.93  E-value=1.7e-08  Score=113.74  Aligned_cols=76  Identities=24%  Similarity=0.332  Sum_probs=55.2

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++...+.+.|.+.+++.|.                  ++++++++|++++.++++ +++++....+|+  ..+++|++|
T Consensus       179 ~Vd~~~l~~aL~~~a~~~Gg------------------v~i~~~teV~~I~~~~dg~~~v~~~~~~~G~--~~~i~A~~V  238 (494)
T PRK05257        179 DVNFGALTRQLVGYLQKQGN------------------FELQLGHEVRDIKRNDDGSWTVTVKDLKTGE--KRTVRAKFV  238 (494)
T ss_pred             EECHHHHHHHHHHHHHhCCC------------------eEEEeCCEEEEEEECCCCCEEEEEEEcCCCc--eEEEEcCEE
Confidence            56667888889898888762                  399999999999986665 666654322342  236899999


Q ss_pred             EeccCCC-chhhcccCCC
Q 005134          230 IGTDGAG-STVRKLVGID  246 (712)
Q Consensus       230 VgADG~~-S~VR~~lgi~  246 (712)
                      |.|.|++ +.+++.+|+.
T Consensus       239 VvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        239 FIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             EECCCcchHHHHHHcCCC
Confidence            8777766 5678888765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.90  E-value=2.8e-08  Score=111.11  Aligned_cols=165  Identities=17%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ...+|+||||||+||++|..|.+.|++++||||++..-   .....++++-.  +.+ ++.....  ......+...  .
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G~W~~~~~~~~--d~~-~~~~~~~--~~~s~~Y~~L--~   78 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---GLWVYTPKSES--DPL-SLDPTRS--IVHSSVYESL--R   78 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---ceeecCCCcCC--Ccc-ccCCCCc--ccchhhhhhh--h
Confidence            35789999999999999999999999999999998642   11112221100  001 1100000  0000000000  0


Q ss_pred             ecCCCCeeeee-cCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          122 TSVTGPILGSV-DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       122 ~~~~G~~l~~~-~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ++ ..+....+ +.+....+.. .........+...+.+.|.+.++..++.                 ..|+|+++|+++
T Consensus        79 tn-~p~~~m~f~dfp~~~~~~~-~~~~~~~fp~~~ev~~YL~~~a~~fgl~-----------------~~I~~~t~V~~V  139 (461)
T PLN02172         79 TN-LPRECMGYRDFPFVPRFDD-ESRDSRRYPSHREVLAYLQDFAREFKIE-----------------EMVRFETEVVRV  139 (461)
T ss_pred             cc-CCHhhccCCCCCCCccccc-ccCcCCCCCCHHHHHHHHHHHHHHcCCc-----------------ceEEecCEEEEE
Confidence            00 00000000 1110000000 0000011234567888999999888761                 149999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +..++.++|++..  ++. ...+..+|.||.|.|..+.
T Consensus       140 ~~~~~~w~V~~~~--~~~-~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        140 EPVDGKWRVQSKN--SGG-FSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             eecCCeEEEEEEc--CCC-ceEEEEcCEEEEeccCCCC
Confidence            9888888777763  221 2235689999999998653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.89  E-value=1.8e-09  Score=120.22  Aligned_cols=154  Identities=22%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----ceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      |||||||||+|+++|+.+++.|.+|+||||.+.+-...    ..........+  ....|+.+++.+.......      
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~------   72 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGG------   72 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhcc------
Confidence            79999999999999999999999999999998752211    11122222222  1123666666654322100      


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                            ..   ..  ..      ..+.....+....++.+|.+.+.+.|+                   +|++++.++++
T Consensus        73 ------~~---~~--~~------~~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v  116 (428)
T PF12831_consen   73 ------YP---QE--DR------YGWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV  116 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------cc---cc--cc------ccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence                  00   00  00      000001234455566677777766676                   99999999999


Q ss_pred             EEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCc
Q 005134          201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL  247 (712)
Q Consensus       201 ~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~  247 (712)
                      ..+++.|+ |++... +|   ..+|+|+++|.|+|- ..+-...|.++
T Consensus       117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~~~  159 (428)
T PF12831_consen  117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGAPY  159 (428)
T ss_dssp             ------------------------------------------------
T ss_pred             ccccccccccccccc-cc---ccccccccccccccc-ccccccccccc
Confidence            98876543 333322 23   468999999999995 45555666654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.88  E-value=9.6e-09  Score=102.15  Aligned_cols=138  Identities=24%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeecCC
Q 005134           47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVT  125 (712)
Q Consensus        47 lIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~~~  125 (712)
                      +||||||+||++|..|.++|++ ++||||++.+-                    |.+....... ...... + + ....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~-~~~~~~-~-~-~~~~   56 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYT-RLHSPS-F-F-SSDF   56 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTT-T-BSSS-C-C-TGGS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCC-ccccCc-c-c-cccc
Confidence            6999999999999999999999 99999987641                    1111100000 000000 0 0 0000


Q ss_pred             CCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC
Q 005134          126 GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ  205 (712)
Q Consensus       126 G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~  205 (712)
                      +  +..+..........  .+......++..+.+.|.+.+++++.                   +++++++|++++.+++
T Consensus        57 ~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~~~~  113 (203)
T PF13738_consen   57 G--LPDFESFSFDDSPE--WRWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRRDGD  113 (203)
T ss_dssp             S----CCCHSCHHHHHH--HHHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEEETT
T ss_pred             c--CCcccccccccCCC--CCCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEEecc
Confidence            0  00000000000000  00012246677888889888888877                   7999999999999999


Q ss_pred             eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          206 CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       206 ~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +.++++.   ++    .+++|+.||.|-|..|.
T Consensus       114 ~w~v~~~---~~----~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen  114 GWTVTTR---DG----RTIRADRVVLATGHYSH  139 (203)
T ss_dssp             TEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred             EEEEEEE---ec----ceeeeeeEEEeeeccCC
Confidence            9877774   34    37889999999998765

...

>PRK07233 hypothetical protein; Provisional

Probab=98.86  E-value=3.6e-07  Score=101.97  Aligned_cols=59  Identities=25%  Similarity=0.418  Sum_probs=44.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----c-------eee---cCHhHHHHHHhhhcHHHH
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----Q-------AHF---INNRYALVFRKLDGLAEE  104 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-----r-------a~~---i~~rtmeilr~l~Gl~d~  104 (712)
                      +|+|||||++||++|..|+++|++|+|+|+++.+--.-     .       ++.   -.+...++++++ |+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l-g~~~~   74 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL-GLEDK   74 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc-CCCCc
Confidence            69999999999999999999999999999998652211     0       111   235567888887 77544

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.86  E-value=7.7e-08  Score=107.82  Aligned_cols=77  Identities=22%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             cccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEEEEc-CCeEEEEEEeccCCceeeEEEEec
Q 005134          150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQCN  227 (712)
Q Consensus       150 ~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~-~~~v~v~v~~~~~g~~~~~~i~ad  227 (712)
                      ..++...|.+.|.+.+.+. |+                   +++++++|++++.+ ++++++++....++.  ..+++||
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~--~~~i~Ad  237 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTGE--KREQVAD  237 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCCc--eEEEEcC
Confidence            4677778888888888643 55                   99999999999887 666776654222331  2368999


Q ss_pred             EEEeccCCCc-hhhcccCCCc
Q 005134          228 ILIGTDGAGS-TVRKLVGIDL  247 (712)
Q Consensus       228 ~VVgADG~~S-~VR~~lgi~~  247 (712)
                      +||-|-|++| .+.+.+|+..
T Consensus       238 ~VV~AAGawS~~La~~~Gi~~  258 (497)
T PRK13339        238 YVFIGAGGGAIPLLQKSGIPE  258 (497)
T ss_pred             EEEECCCcchHHHHHHcCCCc
Confidence            9987777776 5777787653

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.85  E-value=3.5e-07  Score=101.60  Aligned_cols=34  Identities=21%  Similarity=0.552  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +||+|||||++||++|+.|+++|++|+|+||...
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            3799999999999999999999999999999853

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.83  E-value=2.5e-07  Score=96.81  Aligned_cols=168  Identities=24%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCC-ceeecCHhHHHHH-HhhhcHHHHHHhcCCCc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP-QAHFINNRYALVF-RKLDGLAEEIERSQPPV  112 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~~-ra~~i~~rtmeil-r~l~Gl~d~l~~~~~~~  112 (712)
                      .+++||+||||||+||++|+.|.+.      .++|+|+||...+-.|. .+..|.|.++..| -.+       ++.+.|.
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~w-------ke~~apl  146 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDW-------KEDGAPL  146 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcch-------hhcCCcc
Confidence            3568999999999999999999765      57999999999874432 3445556544222 111       2233332


Q ss_pred             ccc---ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccc
Q 005134          113 DLW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (712)
Q Consensus       113 ~~~---~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (712)
                      ...   ..+.+.   .+..-..++.+.+-+      ....+.++-..|.+.|-+.+++.|+                   
T Consensus       147 ~t~vT~d~~~fL---t~~~~i~vPv~~pm~------NhGNYvv~L~~~v~wLg~kAEe~Gv-------------------  198 (621)
T KOG2415|consen  147 NTPVTSDKFKFL---TGKGRISVPVPSPMD------NHGNYVVSLGQLVRWLGEKAEELGV-------------------  198 (621)
T ss_pred             cccccccceeee---ccCceeecCCCcccc------cCCcEEEEHHHHHHHHHHHHHhhCc-------------------
Confidence            211   112221   121111111111100      0112455667899999999999998                   


Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEecc-----CCcee-----eEEEEecEEEeccCCCchhhccc
Q 005134          190 EILMGHECVSVSATDQCINVIASFLK-----EGKCT-----ERNIQCNILIGTDGAGSTVRKLV  243 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~-----~g~~~-----~~~i~ad~VVgADG~~S~VR~~l  243 (712)
                      +|.-+..+..+-.++|+-..-+...|     +|...     --.+.|+.-|-|.|.|..+-+++
T Consensus       199 EiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi  262 (621)
T KOG2415|consen  199 EIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI  262 (621)
T ss_pred             eeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence            44444444444333333211111111     11100     12588999999999997776654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.83  E-value=3.6e-07  Score=103.12  Aligned_cols=60  Identities=27%  Similarity=0.415  Sum_probs=44.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-------C-----ceee---cCHhHHHHHHhhhcHHH
Q 005134           45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH-------P-----QAHF---INNRYALVFRKLDGLAE  103 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~-------~-----ra~~---i~~rtmeilr~l~Gl~d  103 (712)
                      +|+|||||++||++|..|++.      |++|+|+|+++.+--+       +     .++.   -.+..+++++++ |+.+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l-gl~~   81 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL-NLEE   81 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc-CCcc
Confidence            599999999999999999986      4899999999754111       0     1111   235678888888 8865


Q ss_pred             HH
Q 005134          104 EI  105 (712)
Q Consensus       104 ~l  105 (712)
                      .+
T Consensus        82 ~~   83 (463)
T PRK12416         82 EM   83 (463)
T ss_pred             ce
Confidence            54

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.82  E-value=4.5e-08  Score=109.99  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             ccChhHHHHHHHHHHHh----cCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEE
Q 005134          151 HFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQ  225 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~  225 (712)
                      .++-..|...|.+.+.+    .|.                 +++++++++|++++.+++ .+.|+.   ++|     +++
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~-----------------~v~i~~~t~V~~I~~~~~~~~~V~T---~~G-----~i~  261 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGK-----------------KISINLNTEVLNIERSNDSLYKIHT---NRG-----EIR  261 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCC-----------------CEEEEeCCEEEEEEecCCCeEEEEE---CCC-----EEE
Confidence            45556777888888887    663                 138999999999998744 444433   233     589


Q ss_pred             ecEEEeccCCCch-hhcccCC
Q 005134          226 CNILIGTDGAGST-VRKLVGI  245 (712)
Q Consensus       226 ad~VVgADG~~S~-VR~~lgi  245 (712)
                      ||+||.|-|++|. +-+.+|+
T Consensus       262 A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        262 ARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             eCEEEECcChhHHHHHHHhCC
Confidence            9999999999984 5666665

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.81  E-value=8.1e-08  Score=108.72  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=85.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCce---eecCH-hHHHHHHhhhcHHHHHH-hcCCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQA---HFINN-RYALVFRKLDGLAEEIE-RSQPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra---~~i~~-rtmeilr~l~Gl~d~l~-~~~~~~~~  114 (712)
                      +.++||+||||||+|+.+|+.+++.|.+|+|||++... ...++.   .++.. ...+-++.++|+...+. ..+..   
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq---   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ---   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc---
Confidence            34699999999999999999999999999999998522 111111   11111 11222233322222221 11111   


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                         +.......|...              ..+  ...+++..+...|.+.+.+.+.                  +++ +.
T Consensus        79 ---~r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~n------------------V~I-~q  120 (618)
T PRK05192         79 ---FRMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQPN------------------LDL-FQ  120 (618)
T ss_pred             ---eeecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCCC------------------cEE-EE
Confidence               000000011100              011  1356777888888888876532                  365 45


Q ss_pred             cEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       195 ~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      .+++++..+++.|.....  .+|    ..+.|+.||.|+|..+
T Consensus       121 ~~V~~Li~e~grV~GV~t--~dG----~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        121 GEVEDLIVENGRVVGVVT--QDG----LEFRAKAVVLTTGTFL  157 (618)
T ss_pred             eEEEEEEecCCEEEEEEE--CCC----CEEECCEEEEeeCcch
Confidence            678888777776542222  244    3799999999999765

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.81  E-value=8.3e-07  Score=98.62  Aligned_cols=185  Identities=15%  Similarity=0.167  Sum_probs=106.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CCceeecCHhHHHHHHhhh-c-HHHHH------HhcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-HPQAHFINNRYALVFRKLD-G-LAEEI------ERSQPP  111 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~-~~ra~~i~~rtmeilr~l~-G-l~d~l------~~~~~~  111 (712)
                      +.++||+|||||+.|+-.|..++.+|++|+|+|++..-+- .++.+.+-..+++.+.+.. + +.+.+      .+.++.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH   89 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH   89 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence            4779999999999999999999999999999999975432 2333444444444443320 1 11222      222222


Q ss_pred             ccccceeEeeec------------------CCCC-eee-eecCCCcc---ccccccCC--------ccccccChhHHHHH
Q 005134          112 VDLWRKFIYCTS------------------VTGP-ILG-SVDHMQPQ---DFEKVVSP--------VSVAHFSQYKLNKL  160 (712)
Q Consensus       112 ~~~~~~~~~~~~------------------~~G~-~l~-~~~~~~~~---~~~~~~~p--------~~~~~i~q~~Le~~  160 (712)
                      ......+.+-..                  +.|. ... ........   ...+...+        +.-..+.-.+|.-.
T Consensus        90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~  169 (532)
T COG0578          90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA  169 (532)
T ss_pred             ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence            111111111111                  1110 000 00000000   00000001        11223444566666


Q ss_pred             HHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch-h
Q 005134          161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V  239 (712)
Q Consensus       161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~-V  239 (712)
                      +...+.+.|.                   .++..++|+++..+++-+-|.+.+..+|  +++.|+|+.||-|-|.++- +
T Consensus       170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~~tg--~~~~ira~~VVNAaGpW~d~i  228 (532)
T COG0578         170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDRETG--ETYEIRARAVVNAAGPWVDEI  228 (532)
T ss_pred             HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEecCCC--cEEEEEcCEEEECCCccHHHH
Confidence            6677777787                   8899999999999888444666665555  4689999999999999985 5


Q ss_pred             hcccCCC
Q 005134          240 RKLVGID  246 (712)
Q Consensus       240 R~~lgi~  246 (712)
                      ++..+..
T Consensus       229 ~~~~~~~  235 (532)
T COG0578         229 LEMAGLE  235 (532)
T ss_pred             HHhhccc
Confidence            6666433

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.80  E-value=9e-08  Score=109.77  Aligned_cols=74  Identities=12%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++-..|...|...+.+.|+                   +++++++|+++..+++.++ +++.+..+++  ..+|+|++|
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~--~~~i~A~~V  203 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTGE--TQEIHAPVV  203 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCCc--EEEEECCEE
Confidence            45566777777788888887                   9999999999988777654 4554333332  357999999


Q ss_pred             EeccCCCch-hhcccCC
Q 005134          230 IGTDGAGST-VRKLVGI  245 (712)
Q Consensus       230 VgADG~~S~-VR~~lgi  245 (712)
                      |-|-|++|. +.+..++
T Consensus       204 VnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        204 VNAAGIWGQHIAEYADL  220 (546)
T ss_pred             EECCChhHHHHHHhcCC
Confidence            999999974 5555554

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.79  E-value=6e-07  Score=104.34  Aligned_cols=73  Identities=21%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC--CeEE-EEEEeccCCceeeEEEEec
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQCN  227 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~--~~v~-v~v~~~~~g~~~~~~i~ad  227 (712)
                      .++-..|...|.+.+.+.|+                   +++.+++|+++..++  +.+. |++.+..+++  +++|+++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~--~~~i~a~  286 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTGK--EFDVYAK  286 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCCc--EEEEEeC
Confidence            45566788888888888887                   999999999998763  4443 4454333342  3579999


Q ss_pred             EEEeccCCCch-hhcccC
Q 005134          228 ILIGTDGAGST-VRKLVG  244 (712)
Q Consensus       228 ~VVgADG~~S~-VR~~lg  244 (712)
                      +||.|.|++|. +++.++
T Consensus       287 ~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        287 VVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEEECCCHhHHHHHHhcc
Confidence            99999999975 677665

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.77  E-value=5.8e-08  Score=114.22  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++||+|||||++|+++|+.|+++|++|+||||...
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~  294 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA  294 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            47999999999999999999999999999999853

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.76  E-value=3.4e-07  Score=104.18  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||.+||++|+.++++|.+|+||||.+..
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~   96 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA   96 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            35789999999999999999999999999999998764

>PLN02612 phytoene desaturase

Probab=98.74  E-value=7.5e-06  Score=94.36  Aligned_cols=65  Identities=25%  Similarity=0.344  Sum_probs=49.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-------------cee---ecCHhHHHHHHhhhcHHHH
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-------------QAH---FINNRYALVFRKLDGLAEE  104 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-------------ra~---~i~~rtmeilr~l~Gl~d~  104 (712)
                      ....+|+|||||++||++|+.|+++|++|+|+|++......-             ..+   ...++.+++|+++ |+.+.
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~  169 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDR  169 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCccc
Confidence            445899999999999999999999999999999986431110             011   1346789999999 98765


Q ss_pred             HH
Q 005134          105 IE  106 (712)
Q Consensus       105 l~  106 (712)
                      +.
T Consensus       170 ~~  171 (567)
T PLN02612        170 LQ  171 (567)
T ss_pred             ce
Confidence            43

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.71  E-value=1.1e-07  Score=100.35  Aligned_cols=112  Identities=25%  Similarity=0.379  Sum_probs=75.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+||++|..|++.|++|+|||+...     .+.....          .   .                   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~----------~---~-------------------   43 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT----------T---E-------------------   43 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec----------c---c-------------------
Confidence            5899999999999999999999999999998761     1100000          0   0                   


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                           +..+             |.....+....+...+.+.+++.++                   ++++ +++++++.+
T Consensus        44 -----~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~   85 (300)
T TIGR01292        44 -----VENY-------------PGFPEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS   85 (300)
T ss_pred             -----cccc-------------CCCCCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence                 0000             0000012233555667777777776                   7888 899999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++.++++..   ++.    ++++|+||.|.|...
T Consensus        86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~  112 (300)
T TIGR01292        86 DRPFKVKTG---DGK----EYTAKAVIIATGASA  112 (300)
T ss_pred             CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence            777666543   332    689999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR00275 flavoprotein, HI0933 family

Probab=98.71  E-value=4.8e-08  Score=107.74  Aligned_cols=149  Identities=25%  Similarity=0.329  Sum_probs=83.7

Q ss_pred             EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceeecCHhHH-HHHHhhhc----HHHHHHhcCCCcccc
Q 005134           47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYA-LVFRKLDG----LAEEIERSQPPVDLW  115 (712)
Q Consensus        47 lIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~i~~rtm-eilr~l~G----l~d~l~~~~~~~~~~  115 (712)
                      +|||||++||++|+.|+++|.+|+|+||.+.+..      .++....+.... +++...+.    +...+..... .+. 
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~-~d~-   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSN-KDL-   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCH-HHH-
Confidence            6999999999999999999999999999886522      122222232211 11121100    1111111000 000 


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                        ..++. ..|-.+....     . .. .-|   ..-....+...|.+.+++.|+                   ++++++
T Consensus        79 --~~~~~-~~Gv~~~~~~-----~-g~-~~p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~  126 (400)
T TIGR00275        79 --IDFFE-SLGLELKVEE-----D-GR-VFP---CSDSAADVLDALLNELKELGV-------------------EILTNS  126 (400)
T ss_pred             --HHHHH-HcCCeeEEec-----C-CE-eEC---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence              00000 0111111000     0 00 001   111235677788888888776                   999999


Q ss_pred             EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++++++.+++.+.++.    ++    .++.+|.||.|.|..|
T Consensus       127 ~V~~i~~~~~~~~v~~----~~----~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       127 KVKSIKKDDNGFGVET----SG----GEYEADKVILATGGLS  160 (400)
T ss_pred             EEEEEEecCCeEEEEE----CC----cEEEcCEEEECCCCcc
Confidence            9999988777655443    23    2589999999999988

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.70  E-value=3.2e-06  Score=94.96  Aligned_cols=59  Identities=25%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC------------Cceee---cCHhHHHHHHhhhcHHHH
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH------------PQAHF---INNRYALVFRKLDGLAEE  104 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~~------------~ra~~---i~~rtmeilr~l~Gl~d~  104 (712)
                      +|+|||||++||++|..|+++|  ++|+|+|+++.+--+            -.++.   -.+..+++++++ |+.+.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl~~~   77 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL-GLEDE   77 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc-CCccc
Confidence            6999999999999999999988  899999998754211            01111   134577888888 87654

>PLN02661 Putative thiazole synthesis

Probab=98.70  E-value=3.3e-07  Score=97.14  Aligned_cols=38  Identities=34%  Similarity=0.453  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      ..++||+|||||++||++|+.|+++ |++|+||||...+
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            4468999999999999999999986 8999999998755

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.69  E-value=9.4e-08  Score=107.89  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +.++||||||||++||++|+.|+++|.+|+||||.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3568999999999999999999999999999999864

>PRK07121 hypothetical protein; Validated

Probab=98.65  E-value=2.1e-07  Score=105.71  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||+|.+||++|+.++++|.+|+||||.+..
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            45799999999999999999999999999999998754

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.63  E-value=1.3e-06  Score=100.19  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|.+||++|+.+++.|.+|+||||....
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            45799999999999999999999999999999998754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.62  E-value=2.6e-07  Score=105.47  Aligned_cols=114  Identities=19%  Similarity=0.340  Sum_probs=79.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ...+||+||||||+||++|+.|+++|++++|||+...      +...        ... ++.                  
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~~------------------  255 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG------GQVL--------DTM-GIE------------------  255 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ceee--------ccC-ccc------------------
Confidence            4468999999999999999999999999999975311      1000        000 000                  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                        +..+     +                 ....-.++...|.+.++++|+                   +++++++++++
T Consensus       256 --~~~~-----~-----------------~~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I  292 (517)
T PRK15317        256 --NFIS-----V-----------------PETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL  292 (517)
T ss_pred             --ccCC-----C-----------------CCCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence              0000     0                 011234567778888888876                   89999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ...++..++++.   +|.    +++++.||.|+|+++
T Consensus       293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~  322 (517)
T PRK15317        293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW  322 (517)
T ss_pred             EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence            987777666553   442    589999999999976

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.62  E-value=8.5e-06  Score=91.89  Aligned_cols=61  Identities=20%  Similarity=0.311  Sum_probs=46.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC-------CC-----ceeec---CHhHHHHHHhhhcHHHH
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST-------HP-----QAHFI---NNRYALVFRKLDGLAEE  104 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~~-------~~-----ra~~i---~~rtmeilr~l~Gl~d~  104 (712)
                      .||+|||||++||++|..|+++    |++|+|+|+++.+--       .+     .++.+   .+..+++++++ |+.+.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l-gl~~~   81 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL-GLEHV   81 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc-CCCcc
Confidence            6899999999999999999999    999999999875411       11     11222   34588889988 88654


Q ss_pred             H
Q 005134          105 I  105 (712)
Q Consensus       105 l  105 (712)
                      +
T Consensus        82 ~   82 (462)
T TIGR00562        82 L   82 (462)
T ss_pred             c
Confidence            4

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.60  E-value=1.3e-06  Score=101.02  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      ..+...|.+.+.+.|+                   ++++++.++++..+++.|. +.+....+|+  ...+.|+.||.|+
T Consensus       129 ~~i~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVlAt  187 (566)
T TIGR01812       129 HALLHTLYEQCLKLGV-------------------SFFNEYFALDLIHDDGRVRGVVAYDLKTGE--IVFFRAKAVVLAT  187 (566)
T ss_pred             HHHHHHHHHHHHHcCC-------------------EEEeccEEEEEEEeCCEEEEEEEEECCCCc--EEEEECCeEEECC
Confidence            3566778888877776                   9999999999987766543 2222222442  3579999999999


Q ss_pred             CCCchhhc
Q 005134          234 GAGSTVRK  241 (712)
Q Consensus       234 G~~S~VR~  241 (712)
                      |..|.+..
T Consensus       188 GG~~~~~~  195 (566)
T TIGR01812       188 GGYGRIYK  195 (566)
T ss_pred             CcccCCCC
Confidence            99997654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.60  E-value=2.8e-07  Score=102.67  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~   78 (712)
                      .+.++||+|||||++||++|..|.++|++ ++|+||+...
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence            35679999999999999999999999999 9999999865

>TIGR00551 nadB L-aspartate oxidase

Probab=98.59  E-value=1.2e-06  Score=99.34  Aligned_cols=64  Identities=11%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       155 ~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ..+...|.+.+.+ .++                   +++++++++++..+++.|. +.+..  .+.  ...++++.||.|
T Consensus       128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~--~~~--~~~i~A~~VVlA  184 (488)
T TIGR00551       128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVWN--RET--VETCHADAVVLA  184 (488)
T ss_pred             HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEEE--CCc--EEEEEcCEEEEC
Confidence            4677888888876 455                   9999999999987766554 43432  222  357899999999


Q ss_pred             cCCCchhhc
Q 005134          233 DGAGSTVRK  241 (712)
Q Consensus       233 DG~~S~VR~  241 (712)
                      +|..|.+..
T Consensus       185 tGG~~~~~~  193 (488)
T TIGR00551       185 TGGAGKLYQ  193 (488)
T ss_pred             CCcccCCCC
Confidence            999998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.58  E-value=2.9e-07  Score=103.16  Aligned_cols=62  Identities=13%  Similarity=0.095  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ..+...|.+.+.+.|+                   +++++++++++..+++ .|+ +.+.. .++  ....+.++.||.|
T Consensus       130 ~~l~~~l~~~~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~~~a~~VVlA  187 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGI-------------------DTRLNSKVEDLIQDDQGTVVGVVVKG-KGK--GIYIKAAKAVVLA  187 (439)
T ss_pred             HHHHHHHHHHHHHcCC-------------------EEEeCCEeeEeEECCCCcEEEEEEEe-CCC--eEEEEecceEEEe
Confidence            4677888888888887                   9999999999998654 332 33432 233  2356899999999


Q ss_pred             cCCCch
Q 005134          233 DGAGST  238 (712)
Q Consensus       233 DG~~S~  238 (712)
                      .|..+.
T Consensus       188 tGg~~~  193 (439)
T TIGR01813       188 TGGFGS  193 (439)
T ss_pred             cCCCCC
Confidence            998886

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.58  E-value=8.1e-07  Score=103.08  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +.++||||||||++||++|+.+++.  |.+|+||||....
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            3568999999999999999999998  9999999998753

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.58  E-value=7.6e-07  Score=100.28  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~   76 (712)
                      ..++||+|||||++||++|+.|+++  |.+|+|+|+..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4458999999999999999999998  99999999975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.58  E-value=3.1e-07  Score=104.25  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=83.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCC-ccccceeEeee
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCT  122 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~-~~~~~~~~~~~  122 (712)
                      -+|+|||||++||++|..|...|++++++||++..                    +|++.--...... ...+.....  
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i--------------------GG~W~~~~~~~~g~~~~y~sl~~--   59 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI--------------------GGLWRYTENPEDGRSSVYDSLHT--   59 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS--------------------SGGGCHSTTCCCSEGGGSTT-B---
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC--------------------CccCeeCCcCCCCccccccceEE--
Confidence            47999999999999999999999999999999875                    1332100000000 000000000  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                      + .-+.+..+     .++.  ..+......++.++.+.|.+.++.++..                 ..|+|+++|++++.
T Consensus        60 n-~sk~~~~f-----sdfp--~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~-----------------~~I~fnt~V~~v~~  114 (531)
T PF00743_consen   60 N-TSKEMMAF-----SDFP--FPEDYPDFPSHSEVLEYLESYAEHFGLR-----------------KHIRFNTEVVSVER  114 (531)
T ss_dssp             S-S-GGGSCC-----TTS---HCCCCSSSEBHHHHHHHHHHHHHHTTGG-----------------GGEETSEEEEEEEE
T ss_pred             e-eCchHhcC-----CCcC--CCCCCCCCCCHHHHHHHHHHHHhhhCCc-----------------ceEEEccEEeEeee
Confidence            0 00111111     1111  0111123457889999999999988761                 27999999999998


Q ss_pred             cCC-----eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQ-----CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~-----~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .++     ..+|+.  ..+|+  .++-.+|.||.|-|.++.
T Consensus       115 ~~d~~~~~~W~V~~--~~~g~--~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen  115 DPDFSATGKWEVTT--ENDGK--EETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             ETTTT-ETEEEEEE--TTTTE--EEEEEECEEEEEE-SSSC
T ss_pred             ccccCCCceEEEEe--ecCCe--EEEEEeCeEEEcCCCcCC
Confidence            654     345543  34453  345678999999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.57  E-value=1.4e-06  Score=101.29  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||+|.+||++|+.+++.|.+|+||||....
T Consensus        48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            35689999999999999999999999999999998643

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.56  E-value=2.1e-06  Score=99.22  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +.++||||||||.+||++|+.+++.  |.+|+|+||....
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            4568999999999999999999987  5899999998643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.56  E-value=3.5e-05  Score=86.75  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------C----ce-e---ecCHhHHHHHHhhhcHHHHH
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------P----QA-H---FINNRYALVFRKLDGLAEEI  105 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--------~----ra-~---~i~~rtmeilr~l~Gl~d~l  105 (712)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+.-+        +    .+ +   ...++.+++|+++ |+.+.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~~   76 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDRL   76 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccce
Confidence            5899999999999999999999999999998753211        0    01 1   2247889999999 886544

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.55  E-value=4.6e-06  Score=85.75  Aligned_cols=48  Identities=33%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN   88 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~   88 (712)
                      ....+|+|||||+=||++|+.|+|+|.+++++|+.+-+...+..+..|
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~s   52 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGIS   52 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcc
Confidence            345899999999999999999999999999999999886665555444

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.54  E-value=5.5e-07  Score=102.74  Aligned_cols=114  Identities=18%  Similarity=0.329  Sum_probs=78.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ...+||+||||||+||++|+.|++.|++|+|||.+..      +..        .... ++.              .+  
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G------G~~--------~~~~-~~~--------------~~--  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG------GQV--------KDTV-GIE--------------NL--  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ccc--------ccCc-Ccc--------------cc--
Confidence            4469999999999999999999999999999974311      100        0000 100              00  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                          .+                  .+    .....++...|.+.+++.++                   +++.+++++++
T Consensus       259 ----~~------------------~~----~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I  293 (515)
T TIGR03140       259 ----IS------------------VP----YTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI  293 (515)
T ss_pred             ----cc------------------cC----CCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence                00                  00    11234566777777777776                   89999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +.+++.+.+++.   +|.    ++++|+||.|.|++.
T Consensus       294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW  323 (515)
T ss_pred             EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence            887776666553   442    689999999999863

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=4.5e-07  Score=99.90  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=91.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +...+|+||||||+||++|..|.++|++++++||.....    +........+.-..  -+.+.++-.- +.+.+     
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG----GlW~y~~~~~~~~s--s~Y~~l~tn~-pKe~~-----   71 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG----GLWKYTENVEVVHS--SVYKSLRTNL-PKEMM-----   71 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc----ceEeecCccccccc--chhhhhhccC-Chhhh-----
Confidence            456899999999999999999999999999999998752    11111100000000  0111111111 11000     


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                               ..-+.+.+.++       +....+...+...|.+.|++++.                 ...|+|+++++.+
T Consensus        72 ---------~~~dfpf~~~~-------~~~~p~~~e~~~YL~~yA~~F~l-----------------~~~i~f~~~v~~v  118 (448)
T KOG1399|consen   72 ---------GYSDFPFPERD-------PRYFPSHREVLEYLRDYAKHFDL-----------------LKMINFNTEVVRV  118 (448)
T ss_pred             ---------cCCCCCCcccC-------cccCCCHHHHHHHHHHHHHhcCh-----------------hhheEecccEEEE
Confidence                     00011111110       11223456888999999998875                 2379999999999


Q ss_pred             EEcC-CeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       201 ~~~~-~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +... +...|....  +++. ...-.+|.||.|.|-+.
T Consensus       119 ~~~~~gkW~V~~~~--~~~~-~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  119 DSIDKGKWRVTTKD--NGTQ-IEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             eeccCCceeEEEec--CCcc-eeEEEeeEEEEcccCcC
Confidence            9888 577777763  2221 24567999999999883

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=2.9e-06  Score=97.78  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=35.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...++||||||+|.+||++|+.+++.|.+|+||||.+..
T Consensus         2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~   40 (566)
T PRK06452          2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT   40 (566)
T ss_pred             CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            346799999999999999999999999999999998643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.53  E-value=1.3e-06  Score=100.57  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=36.9

Q ss_pred             CCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        38 ~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .|.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus         2 ~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          2 AMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            34566899999999999999999999999999999998754

>PLN02268 probable polyamine oxidase

Probab=98.52  E-value=3.6e-05  Score=86.13  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||++||++|..|.+.|++|+|+|+++..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~   35 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRI   35 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            37999999999999999999999999999998754

>PLN02576 protoporphyrinogen oxidase

Probab=98.51  E-value=5e-05  Score=86.52  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      ..+++|+|||||++||++|+.|+++ |++|+|+|+++.+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv   48 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV   48 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            3457999999999999999999999 9999999999754

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.49  E-value=4.6e-06  Score=93.04  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            4689999999999999999985 79999999998754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.49  E-value=3.1e-07  Score=102.12  Aligned_cols=65  Identities=15%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             ChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEE-EeccCCceeeEEEEecEEEe
Q 005134          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA-SFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       153 ~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v-~~~~~g~~~~~~i~ad~VVg  231 (712)
                      .-..+...|.+.+++.|+                   +|+++++++++..+++.|+-.+ .+..+|  ...+|+|+-||-
T Consensus       139 ~g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEe
Confidence            345678889999999887                   9999999999999877665333 322344  357899999999


Q ss_pred             ccCCCch
Q 005134          232 TDGAGST  238 (712)
Q Consensus       232 ADG~~S~  238 (712)
                      |.|..+.
T Consensus       198 AtGG~~~  204 (417)
T PF00890_consen  198 ATGGFGG  204 (417)
T ss_dssp             ----BGG
T ss_pred             ccCcccc
Confidence            9999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.49  E-value=2.9e-06  Score=92.63  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +||+|||||++|+++|+.|+++|.+|+|+||...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999863

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=3.2e-06  Score=97.77  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=32.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~   77 (712)
                      .++||||||||++||++|+.+++.|  .+|+||||...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            5689999999999999999999874  89999999864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=4.3e-06  Score=96.80  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=35.9

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF   78 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~~   78 (712)
                      |+..++||||||||++||++|+.+++.|   .+|+|+||....
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~   43 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM   43 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence            4456799999999999999999999998   899999998754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=4e-06  Score=97.77  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||.+||++|+.+++.|.+|+||||...+
T Consensus        33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            35689999999999999999999999999999986543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.46  E-value=6.3e-06  Score=95.60  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...++||||||||++||++|+.+++.|.+|+||||...
T Consensus         9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078          9 IDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            34568999999999999999999999999999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.45  E-value=6.3e-06  Score=95.08  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .++||||||||++||++|+.+++.  |.+|+|+||....
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            358999999999999999999987  6899999998654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.45  E-value=5.8e-06  Score=96.11  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||.+||++|+.+++.|.+|+|+||....
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            35689999999999999999999999999999998653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.6e-06  Score=91.41  Aligned_cols=35  Identities=34%  Similarity=0.693  Sum_probs=30.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      +.+||+||||||+||++|+.++|+|++ ++|+|+..
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            469999999999999999999999999 66677653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.44  E-value=8.4e-07  Score=96.41  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CceeecCHhHHHHHHhhhcHHH-HHHhcCCCccc
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL  114 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~--------~ra~~i~~rtmeilr~l~Gl~d-~l~~~~~~~~~  114 (712)
                      .||+|||||++|+.+|+.|+++|++|+|||+++.....        .+....+.++..++... |++. ++...+...  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~--   79 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI--   79 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence            59999999999999999999999999999988765321        12334556667777777 7664 454433211  


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                           +.   .....         .    ..+.....++|..+.+.|.+.+.+.+.                  ++++ .
T Consensus        80 -----~~---aad~~---------~----vPA~gaLvvdR~~~~~~L~~~L~~~pn------------------I~l~-~  119 (436)
T PRK05335         80 -----ME---AADAH---------R----VPAGGALAVDREGFSEYVTEALENHPL------------------ITVI-R  119 (436)
T ss_pred             -----ee---ccccc---------C----CCCccceecCHHHHHHHHHHHHHcCCC------------------cEEE-c
Confidence                 00   00000         0    111123467888899999999987643                  4666 4


Q ss_pred             cEEEEEE
Q 005134          195 HECVSVS  201 (712)
Q Consensus       195 ~~v~~v~  201 (712)
                      .+|+++.
T Consensus       120 ~eV~~l~  126 (436)
T PRK05335        120 EEVTEIP  126 (436)
T ss_pred             cchhccc
Confidence            5777775

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.44  E-value=2.8e-06  Score=91.59  Aligned_cols=146  Identities=16%  Similarity=0.256  Sum_probs=82.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCceee---cCHh-HHHHHHhhhcHHHHHHh-cCCCcccccee
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHF---INNR-YALVFRKLDGLAEEIER-SQPPVDLWRKF  118 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lv-Er~~~~~~~~ra~~---i~~r-tmeilr~l~Gl~d~l~~-~~~~~~~~~~~  118 (712)
                      ||+|||||.||+.+|+.+++.|.+|+|| ++.......++...   +... -.+.++.++|+.-.+.. .+.      ++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i------~~   74 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGI------HF   74 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEE------EE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhh------hh
Confidence            7999999999999999999999999999 44444433333222   2111 11233333222211111 110      11


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      .....-.|...                -.....+++..+.+.+.+.+.+.+.                  ++|. ..+|+
T Consensus        75 ~~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~n------------------l~i~-~~~V~  119 (392)
T PF01134_consen   75 RMLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHPN------------------LTII-QGEVT  119 (392)
T ss_dssp             EEESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTSTT------------------EEEE-ES-EE
T ss_pred             hcccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCCC------------------eEEE-Ecccc
Confidence            11100011100                0012468899999999999988654                  4664 57899


Q ss_pred             EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++..+++.|.-...  .+|    ..+.+|.||.|+|...
T Consensus       120 ~l~~e~~~v~GV~~--~~g----~~~~a~~vVlaTGtfl  152 (392)
T PF01134_consen  120 DLIVENGKVKGVVT--KDG----EEIEADAVVLATGTFL  152 (392)
T ss_dssp             EEEECTTEEEEEEE--TTS----EEEEECEEEE-TTTGB
T ss_pred             eEEecCCeEEEEEe--CCC----CEEecCEEEEeccccc
Confidence            99988887655433  245    3799999999999843

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.42  E-value=1.3e-06  Score=100.56  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~   77 (712)
                      ..++||||||||.+||++|+.+++.  |.+|+||||.+.
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            4668999999999999999999987  789999999875

>PLN02676 polyamine oxidase

Probab=98.42  E-value=1.8e-05  Score=89.44  Aligned_cols=37  Identities=32%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      ..+||+|||||++||++|..|+++|+ +|+|+|++...
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            35799999999999999999999998 69999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.42  E-value=6.1e-06  Score=93.09  Aligned_cols=39  Identities=23%  Similarity=0.449  Sum_probs=35.2

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      |.+.++||+||||||+|+++|+.|+++|.+|+||||...
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~   39 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN   39 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            345679999999999999999999999999999999743

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.40  E-value=1.1e-05  Score=93.31  Aligned_cols=37  Identities=35%  Similarity=0.496  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +.++||||||||.+||++|+.+++.|.+|+||||...
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4568999999999999999999999999999999753

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.39  E-value=5.5e-05  Score=77.75  Aligned_cols=40  Identities=23%  Similarity=0.462  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST   80 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~~   80 (712)
                      ..+.||+|||||.+|+++|..|+++    |++|+|+||....+.
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            3468999999999999999999755    799999999986543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=1e-05  Score=92.93  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++||||||||.+||++|+.+ +.|.+|+|+||.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            4568999999999999999999 99999999999753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.36  E-value=3.1e-06  Score=97.42  Aligned_cols=34  Identities=26%  Similarity=0.602  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+||+||||||+||++|+.|+++|++|+|||+..
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4899999999999999999999999999999853

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.36  E-value=4.7e-05  Score=83.59  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++++||+|||||++|+++|+.|+++|.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            45699999999999999999999999999999998753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.36  E-value=1.1e-05  Score=94.17  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      |...++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4467799999999999999999999999999999998754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=1.4e-05  Score=92.60  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4579999999999999999999999999999988653

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.33  E-value=1.2e-05  Score=90.73  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +||||||||++||++|+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            7999999999999999999999999999999864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=2e-05  Score=91.84  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            45689999999999999999999999999999998643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=2.3e-05  Score=90.79  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .++||||||||++||++|+.+++. .+|+|+||...
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence            568999999999999999999986 99999999864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.31  E-value=2.9e-06  Score=96.74  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||||||+| +||++|+.+++.|.+|+||||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            47899999999 9999999999999999999998753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.30  E-value=1.1e-05  Score=91.67  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=82.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-C---CCceeecCHh-HHHHHHhhhcHHHHHHh-cCCCccccce
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-T---HPQAHFINNR-YALVFRKLDGLAEEIER-SQPPVDLWRK  117 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-~---~~ra~~i~~r-tmeilr~l~Gl~d~l~~-~~~~~~~~~~  117 (712)
                      +||+|||||++|+.+|..|++.|.+|+|+|++.... .   .+...++... -.+-++.++|+...+.. .+..      
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~------   74 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQ------   74 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhcee------
Confidence            589999999999999999999999999999975321 1   1111111111 11223333222222111 1110      


Q ss_pred             eEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (712)
Q Consensus       118 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v  197 (712)
                      +.......|...              ..+  ...+++..+...|.+.+.+.+.                  ++++. .++
T Consensus        75 ~r~ln~skgpAV--------------~~~--RaQVDr~~y~~~L~e~Le~~pg------------------V~Ile-~~V  119 (617)
T TIGR00136        75 FRVLNSSKGPAV--------------RAT--RAQIDKVLYRKAMRNALENQPN------------------LSLFQ-GEV  119 (617)
T ss_pred             heecccCCCCcc--------------ccc--HHhCCHHHHHHHHHHHHHcCCC------------------cEEEE-eEE
Confidence            000000000000              011  1467788888888888887743                  36654 467


Q ss_pred             EEEEEc-CCeEE-EEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          198 VSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       198 ~~v~~~-~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +.+..+ ++.+. |.+   .+|.    .++|+.||.|.|..+
T Consensus       120 v~li~e~~g~V~GV~t---~~G~----~I~Ad~VILATGtfL  154 (617)
T TIGR00136       120 EDLILEDNDEIKGVVT---QDGL----KFRAKAVIITTGTFL  154 (617)
T ss_pred             EEEEEecCCcEEEEEE---CCCC----EEECCEEEEccCccc
Confidence            777554 44432 332   2442    689999999999996

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.29  E-value=1e-05  Score=67.67  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            4899999999999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.29  E-value=2.7e-05  Score=90.10  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||+|.+||++|+.+++.|.+|+|+||....
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            34689999999999999999999999999999998543

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.28  E-value=2.7e-05  Score=89.35  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|++||++|+.+++. .+|+||||....
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            4568999999999999999999987 899999998753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.27  E-value=7e-06  Score=95.02  Aligned_cols=38  Identities=32%  Similarity=0.562  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45799999999999999999999999999999998643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.27  E-value=4.5e-06  Score=83.40  Aligned_cols=34  Identities=35%  Similarity=0.570  Sum_probs=32.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|+|||+||+||++|..|+..|++|+||||....
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv   36 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV   36 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence            6999999999999999999999999999998764

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.27  E-value=1.8e-05  Score=90.15  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++||||||+|.+||++|+.+++ |.+|+||||.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence            6899999999999999999986 9999999998754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.27  E-value=0.00013  Score=85.83  Aligned_cols=38  Identities=37%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ....+|+|||||++||++|+.|++.|++|+|+|++..+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            34589999999999999999999999999999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.26  E-value=5.4e-06  Score=95.88  Aligned_cols=38  Identities=42%  Similarity=0.659  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||+|++||++|+.++++|.+|+||||....
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            45799999999999999999999999999999998754

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.25  E-value=2.2e-06  Score=84.92  Aligned_cols=33  Identities=36%  Similarity=0.686  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ||+||||||+|+++|..|++.|++++|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            699999999999999999999999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK09897 hypothetical protein; Provisional

Probab=98.24  E-value=5.8e-06  Score=93.66  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~   78 (712)
                      .+|+||||||+|+++|..|.+++  ++|+|||++..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            47999999999999999998874  589999997654

>PLN02815 L-aspartate oxidase

Probab=98.23  E-value=2.8e-05  Score=89.77  Aligned_cols=37  Identities=19%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|.+||++|+.+++.| +|+||||.+..
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            45689999999999999999999999 99999998754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.22  E-value=1.3e-06  Score=70.63  Aligned_cols=31  Identities=42%  Similarity=0.684  Sum_probs=28.9

Q ss_pred             EECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        48 IVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      |||||++||++|..|+++|++|+|+||++.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence            8999999999999999999999999999875

...

>PRK10262 thioredoxin reductase; Provisional

Probab=98.22  E-value=2e-05  Score=84.41  Aligned_cols=35  Identities=17%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      +...||+||||||+||++|..|+++|++++|||+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            56789999999999999999999999999999954

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.21  E-value=2.8e-05  Score=85.47  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=50.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCC--------------CCceeecC-HhHHHHHHhhhcHHHHHH
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST--------------HPQAHFIN-NRYALVFRKLDGLAEEIE  106 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~--------------~~ra~~i~-~rtmeilr~l~Gl~d~l~  106 (712)
                      ..|+|||||++||++|+.|++++  ++++|+|+.+...-              .+...... +..+++++++ |+.+.+.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~   79 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLL   79 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhc
Confidence            36999999999999999999999  99999999864311              12223333 6678899999 9999987


Q ss_pred             h
Q 005134          107 R  107 (712)
Q Consensus       107 ~  107 (712)
                      .
T Consensus        80 ~   80 (444)
T COG1232          80 W   80 (444)
T ss_pred             c
Confidence            4

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.21  E-value=2.5e-05  Score=84.50  Aligned_cols=74  Identities=23%  Similarity=0.378  Sum_probs=56.4

Q ss_pred             cChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEE
Q 005134          152 FSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      ++=..|-+.|.+.+.+. ++                   +++++|+|+++++.+++ ..|.+.+..+|+  ..+++|++|
T Consensus       178 VnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~--~~~v~a~FV  236 (488)
T PF06039_consen  178 VNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTGE--KREVRAKFV  236 (488)
T ss_pred             ccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCCC--eEEEECCEE
Confidence            34456777777777765 44                   99999999999999887 888887665664  468999999


Q ss_pred             EeccCCCch-hhcccCCC
Q 005134          230 IGTDGAGST-VRKLVGID  246 (712)
Q Consensus       230 VgADG~~S~-VR~~lgi~  246 (712)
                      +..-|++|- +-++.||+
T Consensus       237 fvGAGG~aL~LLqksgi~  254 (488)
T PF06039_consen  237 FVGAGGGALPLLQKSGIP  254 (488)
T ss_pred             EECCchHhHHHHHHcCCh
Confidence            988888874 44556664

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PLN02568 polyamine oxidase

Probab=98.20  E-value=1.8e-05  Score=90.31  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~G-----i~v~lvEr~~~~   78 (712)
                      .++..+|+|||||++||++|..|+++|     ++|+|+|++..+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            345689999999999999999999988     999999998754

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.20  E-value=9.4e-06  Score=93.40  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+|||+|++||++|+.|+++|.+|+||||.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4699999999999999999999999999999998643

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.20  E-value=2e-05  Score=84.97  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +..+||||||||.+||++|..|.|.|++|+|+|.+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence            45689999999999999999999999999999988754

>PRK06116 glutathione reductase; Validated

Probab=98.18  E-value=3.5e-05  Score=86.63  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3699999999999999999999999999999986

>PRK06370 mercuric reductase; Validated

Probab=98.15  E-value=3.5e-05  Score=87.00  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.++||+||||||+|+++|+.|+++|.+|+||||..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            567999999999999999999999999999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.13  E-value=1.8e-05  Score=88.85  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.13  E-value=3.4e-05  Score=87.15  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45999999999999999999999999999999875

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.12  E-value=4.2e-05  Score=87.81  Aligned_cols=37  Identities=24%  Similarity=0.450  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|.+||++|+.++ .|.+|+||||.+..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~   43 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK   43 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence            56799999999999999999997 49999999998754

>PRK14694 putative mercuric reductase; Provisional

Probab=98.11  E-value=4.1e-05  Score=86.51  Aligned_cols=38  Identities=13%  Similarity=0.404  Sum_probs=34.6

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      |+..++||+||||||+|+++|+.|+++|.+|+|||+..
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            34567999999999999999999999999999999863

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.10  E-value=3.2e-05  Score=86.80  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.09  E-value=5.4e-05  Score=85.42  Aligned_cols=35  Identities=40%  Similarity=0.690  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|..|+++|.+|+||||..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            45899999999999999999999999999999875

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.09  E-value=6.9e-05  Score=86.97  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      |||||+|++||++|+.+++.|.+|+|+||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            7999999999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.09  E-value=3.1e-07  Score=96.49  Aligned_cols=181  Identities=38%  Similarity=0.455  Sum_probs=113.9

Q ss_pred             ceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHH
Q 005134          344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (712)
Q Consensus       344 w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~  423 (712)
                      |..+..+|..+-.  --+.+-|+|+|.+.|+|+.+++...++..+|+|+.+.     ...+.|.+|..|| ++...|..+
T Consensus       232 y~~havVAtl~l~--~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-----~~a~~L~~lp~e~-fv~~lNsaf  303 (481)
T KOG3855|consen  232 YDQHAVVATLKLE--EEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-----ENASILKSLPEER-FVDLLNSAF  303 (481)
T ss_pred             ccceeeeEEEEec--ccccccchhHHhcCCCCceeecccccccccceeecCH-----HHHHHHhcCCchh-HHHHHHHHH
Confidence            6667778877763  2388999999999999999999999999999999974     2467899999999 999888887


Q ss_pred             HHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHH
Q 005134          424 SVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIF  503 (712)
Q Consensus       424 s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (712)
                      +.++.+..+..      ++..+.                            -++++..+.+.++..+.+..  .....++
T Consensus       304 ~~q~~~~~~~~------~~~~al----------------------------~~~~~~~~sl~~~~k~~~~~--q~pp~V~  347 (481)
T KOG3855|consen  304 SSQNPRAAYSD------DADFAL----------------------------NGRAQLSESLLNTSKRLANQ--QYPPSVF  347 (481)
T ss_pred             hccCCCchhhh------chhhhh----------------------------cchhhccHHHHhccCccccc--ccCCeEE
Confidence            77665433211      111000                            01222222222322222211  1111222


Q ss_pred             HcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecC----CCCcceeeeCCC
Q 005134          504 EEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVL----STEIISTLDLVS  578 (712)
Q Consensus       504 ~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~----~~~~~St~Dl~~  578 (712)
                      +-.+.....||   ||++|.+ ..|.+..+      .--|....|.|-+-+|.++||--+..+    .....+++||..
T Consensus       348 ~v~dksRa~FP---Lgf~ha~-~yV~~~~A------l~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS  416 (481)
T KOG3855|consen  348 EVGDKSRAQFP---LGFGHAD-EYVTDRVA------LIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS  416 (481)
T ss_pred             Eecccceeecc---cccccHH-HhcCCchh------hhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence            22334455677   8999987 44443211      111223458999999999999987642    234568888854

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=5.8e-05  Score=85.39  Aligned_cols=34  Identities=35%  Similarity=0.623  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            4699999999999999999999999999999985

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.06  E-value=2.9e-05  Score=89.86  Aligned_cols=38  Identities=24%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45789999999999999999999999999999998643

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.05  E-value=0.00019  Score=79.23  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999875

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.05  E-value=6.1e-05  Score=78.72  Aligned_cols=57  Identities=16%  Similarity=0.377  Sum_probs=45.7

Q ss_pred             ceEEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcc
Q 005134          189 REILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLV  248 (712)
Q Consensus       189 ~~v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~  248 (712)
                      .+++.+++|++.+.+.| .|.+++.+..+++  .++++||.+..|=|.+ |.-+-||++..
T Consensus       267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k--~~tle~DvlLVsiGRr-P~t~GLgle~i  324 (506)
T KOG1335|consen  267 IKFKLGTKVTSATRNGDGPVEIEVENAKTGK--KETLECDVLLVSIGRR-PFTEGLGLEKI  324 (506)
T ss_pred             ceeEeccEEEEeeccCCCceEEEEEecCCCc--eeEEEeeEEEEEccCc-ccccCCChhhc
Confidence            49999999999999888 7888888776665  6799999999999976 45555665443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.03  E-value=0.00013  Score=82.73  Aligned_cols=55  Identities=24%  Similarity=0.284  Sum_probs=42.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-ce-----eecCHhHHHHHHhh
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QA-----HFINNRYALVFRKL   98 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~-ra-----~~i~~rtmeilr~l   98 (712)
                      +||+|||+||+|+++|..|++.|++|+|||+........ .+     +.+.....++++.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   61 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVI   61 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHH
Confidence            699999999999999999999999999999998775321 22     23344455565543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12839 hypothetical protein; Provisional

Probab=98.03  E-value=2.4e-05  Score=90.12  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||+|||+|++||++|+.|++.|.+|+||||....
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45799999999999999999999999999999998643

>PLN03000 amine oxidase

Probab=98.02  E-value=0.00073  Score=79.82  Aligned_cols=37  Identities=41%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+|||||++||++|..|++.|++|+|+|++..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            3589999999999999999999999999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=98.02  E-value=2.2e-05  Score=89.97  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=34.5

Q ss_pred             CCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        38 ~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++...++||+||||||+|+++|+.++++|.+|.||||.
T Consensus        43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            33456799999999999999999999999999999986

>PLN02507 glutathione reductase

Probab=98.01  E-value=5e-05  Score=86.30  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..++||+||||||+|+.+|..++++|.+|.|||+.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            45689999999999999999999999999999974

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.01  E-value=9.6e-05  Score=85.52  Aligned_cols=38  Identities=32%  Similarity=0.525  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||+|++||++|+.++++|.+|+||||.+..
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            35699999999999999999999999999999998754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.01  E-value=3.9e-05  Score=82.61  Aligned_cols=150  Identities=21%  Similarity=0.328  Sum_probs=81.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHH--HHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtm--eilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      .+|+|+||.||++|++|++|...+ ++++.+||++....||... +..-.|  ..|+.|       .....|...+....
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gml-l~~~~~q~~fl~Dl-------vt~~~P~s~~sfln   73 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGML-LPGARMQVSFLKDL-------VTLRDPTSPFSFLN   73 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSS-------STTT-TTSTTSHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccC-CCCCcccccccccc-------CcCcCCCCcccHHH
Confidence            479999999999999999999887 9999999999988887432 111111  112211       01111111111000


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      |. ...|+..         .|..    ......+|..+...|.-.+.+.+.                   .++|+++|++
T Consensus        74 YL-~~~~rl~---------~f~~----~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~  120 (341)
T PF13434_consen   74 YL-HEHGRLY---------EFYN----RGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS  120 (341)
T ss_dssp             HH-HHTT-HH---------HHHH----H--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred             HH-HHcCChh---------hhhh----cCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence            10 0111111         0000    012345788888888888777654                   6999999999


Q ss_pred             EEEcCC----eEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       200 v~~~~~----~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      |+...+    ..+|++.+ .+|+  ..++.|+-||.|-|..
T Consensus       121 I~~~~~~~~~~~~V~~~~-~~g~--~~~~~ar~vVla~G~~  158 (341)
T PF13434_consen  121 IEPDDDGDEDLFRVTTRD-SDGD--GETYRARNVVLATGGQ  158 (341)
T ss_dssp             EEEEEETTEEEEEEEEEE-TTS---EEEEEESEEEE----E
T ss_pred             EEEecCCCccEEEEEEee-cCCC--eeEEEeCeEEECcCCC
Confidence            987664    36777764 3343  4689999999999944

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.01  E-value=4.7e-05  Score=85.28  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=33.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +++||+||||||+|+++|+.|+++|.+|+||||.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            469999999999999999999999999999999863

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.00  E-value=0.00017  Score=81.44  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~   78 (712)
                      ..+.+|+|||||++||++|..|.+.    |.+|+|+|+++.+
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            3458999999999999999999995    6899999999864

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.00  E-value=8.3e-05  Score=84.81  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +.++||||||+|.+||++|+.++  |.+|+||||.+.
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            56799999999999999999997  579999999875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.99  E-value=8.9e-05  Score=83.67  Aligned_cols=35  Identities=34%  Similarity=0.549  Sum_probs=32.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|+.++++|.+|+|||++.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~   36 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS   36 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            35899999999999999999999999999999754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.97  E-value=4.5e-05  Score=85.24  Aligned_cols=64  Identities=19%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC-CeEEEEEEeccCCceeeEEEEecEEEecc
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~-~~v~v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      ..+...|.+.+++.|+                   +|+++++++++..++ ++..+.+... ++   ..+++++.||.|.
T Consensus       123 ~~l~~~L~~~a~~~Gv-------------------~i~~~~~v~~l~~~~~~g~v~gv~~~-~~---~~~i~ak~VIlAt  179 (432)
T TIGR02485       123 KALTNALYSSAERLGV-------------------EIRYGIAVDRIPPEAFDGAHDGPLTT-VG---THRITTQALVLAA  179 (432)
T ss_pred             HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEecCCCCeEEEEEEc-CC---cEEEEcCEEEEcC
Confidence            3577788888888887                   999999999998763 3322222211 22   1478999999999


Q ss_pred             CCCchhhc
Q 005134          234 GAGSTVRK  241 (712)
Q Consensus       234 G~~S~VR~  241 (712)
                      |..+.-++
T Consensus       180 GG~~~n~~  187 (432)
T TIGR02485       180 GGLGANRD  187 (432)
T ss_pred             CCcccCHH
Confidence            98776443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.95  E-value=0.00015  Score=83.65  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||||||+|.+||++|+.+++.|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            56999999999999999999999999999999998

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.95  E-value=0.00018  Score=82.85  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=33.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+| +|+++|+..++.|.+|+||||.+..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457999999999 8999999999999999999998653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=9.8e-05  Score=83.59  Aligned_cols=33  Identities=36%  Similarity=0.658  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      .++||+||||||+|+++|+.|++.|.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            368999999999999999999999999999998

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.92  E-value=5.9e-05  Score=87.17  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~La----r~Gi~v~lvEr~~~~   78 (712)
                      ||||||||.+||++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            7999999999999999998    789999999998643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.91  E-value=9e-06  Score=92.05  Aligned_cols=37  Identities=41%  Similarity=0.672  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+||+|||||+.||++|+.|+|+|++|+|+||+..+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            4589999999999999999999999999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=97.89  E-value=0.00022  Score=82.62  Aligned_cols=34  Identities=15%  Similarity=0.425  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5699999999999999999999999999999986

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.85  E-value=9.2e-05  Score=83.10  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~   78 (712)
                      +|+|||||++||++|..|+++|  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            7999999999999999999985  589999998754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.84  E-value=0.00018  Score=78.91  Aligned_cols=99  Identities=19%  Similarity=0.374  Sum_probs=73.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...               .+                         
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------~~-------------------------  181 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------LM-------------------------  181 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------------hC-------------------------
Confidence            47999999999999999999999999999987642100               00                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                    ...+...+.+.+++.|+                   ++++++++++++.+
T Consensus       182 ------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  212 (377)
T PRK04965        182 ------------------------------PPEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEKT  212 (377)
T ss_pred             ------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEcc
Confidence                                          00122334555666676                   89999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++.+++.   +|+    ++.+|+||.|.|..+.
T Consensus       213 ~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        213 DSGIRATLD---SGR----SIEVDAVIAAAGLRPN  240 (377)
T ss_pred             CCEEEEEEc---CCc----EEECCEEEECcCCCcc
Confidence            777655543   443    6899999999998653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.84  E-value=8.5e-05  Score=81.47  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            58999999999999999999999999999988763

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.83  E-value=0.00018  Score=81.59  Aligned_cols=43  Identities=16%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             CccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           35 KTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        35 ~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +++.-...++||+||||||+|+++|..|+++|.+|+||||...
T Consensus         8 ~~~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~   50 (479)
T PRK14727          8 NCMTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV   50 (479)
T ss_pred             cccccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            3334445679999999999999999999999999999998743

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.83  E-value=0.00014  Score=82.05  Aligned_cols=31  Identities=39%  Similarity=0.734  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      +||+||||||+|+++|..|+++|.+|+|||+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            8999999999999999999999999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.83  E-value=0.00014  Score=79.25  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=36.1

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      +..++||||||||-+|.-+|+--+-+|+++.++|+...-+
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S  103 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS  103 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhcccceeEEEecccccC
Confidence            3556999999999999999999999999999999997653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.81  E-value=0.00049  Score=84.56  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+||+||||||+||++|+.|++.|++|+|||+.+.+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3589999999999999999999999999999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.79  E-value=0.0001  Score=75.20  Aligned_cols=54  Identities=30%  Similarity=0.390  Sum_probs=41.4

Q ss_pred             ccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCC
Q 005134           26 TQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFST   80 (712)
Q Consensus        26 ~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~   80 (712)
                      +-.+.++.-.+. .+..++|.+|||||++||+.|..|.-+  +.+|.|+|+......
T Consensus        32 t~~R~i~gg~~s-~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~   87 (453)
T KOG2665|consen   32 TIKRGISGGAES-ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV   87 (453)
T ss_pred             ceeccccCCccc-cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence            334444444322 236789999999999999999999877  999999999887643

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.78  E-value=8.3e-05  Score=84.56  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            589999999999999999999999999999974

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.78  E-value=0.00015  Score=81.17  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~   79 (712)
                      +|+|||||++|+.+|..|+++  +.+|+|||+.+...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            799999999999999999987  68999999997654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.76  E-value=0.00036  Score=77.84  Aligned_cols=200  Identities=16%  Similarity=0.212  Sum_probs=102.4

Q ss_pred             cCcCcCcccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEE-EEcCCCCC---CCCCceee----cC
Q 005134           17 KTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCS-VLEKNKAF---STHPQAHF----IN   88 (712)
Q Consensus        17 ~~~~~p~~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~-lvEr~~~~---~~~~ra~~----i~   88 (712)
                      +...+..+--+.......+..+.-....||+|||||.+|..+|+.|++.|.+.. +.||....   ..++.+..    .+
T Consensus        13 ~~~~~~v~~~qg~~~~~~s~s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~   92 (856)
T KOG2844|consen   13 KGVPYQVKERQGTSVVARSPSTPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPS   92 (856)
T ss_pred             CCCchhhcccCcccccccCccccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCC
Confidence            333333444444333333322222345899999999999999999999999944 45554332   33333321    11


Q ss_pred             HhHHHHHHhh-hcHHHHHHhc-CCCccccce--eEee-ecC---------------CCCeeeee---------cCCCccc
Q 005134           89 NRYALVFRKL-DGLAEEIERS-QPPVDLWRK--FIYC-TSV---------------TGPILGSV---------DHMQPQD  139 (712)
Q Consensus        89 ~rtmeilr~l-~Gl~d~l~~~-~~~~~~~~~--~~~~-~~~---------------~G~~l~~~---------~~~~~~~  139 (712)
                      +-.++++..- .-+..++.+. +.+. .|..  ..+. ++.               .|.+-.-+         +....++
T Consensus        93 dv~~qlia~~~~~l~~~leeEtgl~t-Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~  171 (856)
T KOG2844|consen   93 DVELQLIAHTSRVLYRELEEETGLHT-GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDD  171 (856)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCc-ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhH
Confidence            2222332210 0122233332 2221 1111  0010 000               00000000         0011111


Q ss_pred             c-ccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCc
Q 005134          140 F-EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK  218 (712)
Q Consensus       140 ~-~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~  218 (712)
                      + ....+|.. ..++-.-|.+.|...+.+.|+                   .|..++-|+++....+.+. -|+. .-| 
T Consensus       172 v~g~Ly~P~D-G~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~-gVeT-~~G-  228 (856)
T KOG2844|consen  172 VYGGLYSPGD-GVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFG-GVET-PHG-  228 (856)
T ss_pred             heeeeecCCC-cccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCcc-ceec-cCc-
Confidence            1 11123432 456677889999999999998                   8889999998866544322 2321 123 


Q ss_pred             eeeEEEEecEEEeccCCCc-hhhcccC
Q 005134          219 CTERNIQCNILIGTDGAGS-TVRKLVG  244 (712)
Q Consensus       219 ~~~~~i~ad~VVgADG~~S-~VR~~lg  244 (712)
                          .|++.++|.|-|.+. .|-+..|
T Consensus       229 ----~iet~~~VNaaGvWAr~Vg~m~g  251 (856)
T KOG2844|consen  229 ----SIETECVVNAAGVWAREVGAMAG  251 (856)
T ss_pred             ----ceecceEEechhHHHHHhhhhcC
Confidence                589999999999985 3444334

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.75  E-value=0.00049  Score=85.79  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|.+||++|+..++.|.+|+|+||.+..
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            56799999999999999999999999999999998754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.71  E-value=0.00037  Score=78.69  Aligned_cols=103  Identities=20%  Similarity=0.327  Sum_probs=75.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   ++.                    
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------~~d--------------------  214 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------GTD--------------------  214 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------CCC--------------------
Confidence            36799999999999999999999999999998654310                   000                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   +++.++++++++.
T Consensus       215 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~  243 (466)
T PRK06115        215 --------------------------------TETAKTLQKALTKQGM-------------------KFKLGSKVTGATA  243 (466)
T ss_pred             --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEEE
Confidence                                            0122334455566666                   9999999999988


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++++.+++...++|+  ..++.+|+||.|-|...
T Consensus       244 ~~~~v~v~~~~~~~g~--~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        244 GADGVSLTLEPAAGGA--AETLQADYVLVAIGRRP  276 (466)
T ss_pred             cCCeEEEEEEEcCCCc--eeEEEeCEEEEccCCcc
Confidence            7777776665433332  34799999999999764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.68  E-value=0.00041  Score=78.23  Aligned_cols=101  Identities=19%  Similarity=0.317  Sum_probs=74.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                .+                        
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------------~~------------------------  209 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP----------------GE------------------------  209 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC----------------CC------------------------
Confidence            35899999999999999999999999999998863210                00                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+...+.+.+++.|+                   ++++++++++++.
T Consensus       210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~  239 (461)
T TIGR01350       210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK  239 (461)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                           01122334455666676                   9999999999988


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++++++...   +|+  +.++.+|.||.|-|....
T Consensus       240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             eCCEEEEEEe---CCc--EEEEEeCEEEEecCCccc
Confidence            7777665443   342  246899999999997764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07208 hypothetical protein; Provisional

Probab=97.67  E-value=4.5e-05  Score=86.49  Aligned_cols=38  Identities=37%  Similarity=0.545  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      |...+|+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~   39 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV   39 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45679999999999999999999999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.66  E-value=4.3e-05  Score=85.66  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            46999999999999999999999999999999975

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.66  E-value=0.00016  Score=88.02  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++||||||||.+||++|+.+++.|.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3568999999999999999999999999999999874

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.65  E-value=6.8e-05  Score=84.14  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar--~Gi~v~lvEr~~~~   78 (712)
                      ....+|+||||||+||.+|..|++  .|++|+||||.+.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            345789999999999999999987  79999999999754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.64  E-value=0.00026  Score=67.38  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=27.4

Q ss_pred             EEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCC
Q 005134           47 LIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKA   77 (712)
Q Consensus        47 lIVGaGpaGL~~A~~Lar~-----Gi~v~lvEr~~~   77 (712)
                      +||||||+|++++..|.++     .++++|||+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999888     579999999543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.63  E-value=0.00073  Score=77.19  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=36.4

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      ...++||||||||.+||.+|+.++..|++|+|+||.....
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            3567999999999999999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.62  E-value=0.00055  Score=77.24  Aligned_cols=100  Identities=20%  Similarity=0.350  Sum_probs=73.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                +   .                     
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~---~---------------------  212 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------E---D---------------------  212 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------------C---C---------------------
Confidence            57999999999999999999999999999987643100                0   0                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       213 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~  242 (462)
T PRK06416        213 -------------------------------KEISKLAERALKKRGI-------------------KIKTGAKAKKVEQT  242 (462)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence                                           0112234445556666                   99999999999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++++++.+.  ++|+  +.++.+|+||-|-|...
T Consensus       243 ~~~v~v~~~--~gg~--~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        243 DDGVTVTLE--DGGK--EETLEADYVLVAVGRRP  272 (462)
T ss_pred             CCEEEEEEE--eCCe--eEEEEeCEEEEeeCCcc
Confidence            777666554  2332  35799999999999764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.62  E-value=0.00049  Score=76.72  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+.+.+|||||||.+|+.+|..|.+.+++++|||+++..
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            355689999999999999999998888999999988753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.61  E-value=0.0011  Score=74.79  Aligned_cols=32  Identities=22%  Similarity=0.590  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+||||||+|+++|..|++.|.+|+||||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            89999999999999999999999999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.60  E-value=0.00075  Score=75.02  Aligned_cols=112  Identities=26%  Similarity=0.407  Sum_probs=81.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..-.++|||||+.|+=+|..+++.|.+|+|||+.+.+-+                   +..                   
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------------------~~D-------------------  213 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------------------GED-------------------  213 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------------------cCC-------------------
Confidence            345799999999999999999999999999999885421                   111                   


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                                                       .++-+.|.+.+++.|+                   .++.+++++.++
T Consensus       214 ---------------------------------~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~~  241 (454)
T COG1249         214 ---------------------------------PEISKELTKQLEKGGV-------------------KILLNTKVTAVE  241 (454)
T ss_pred             ---------------------------------HHHHHHHHHHHHhCCe-------------------EEEccceEEEEE
Confidence                                             1223445555556444                   899999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccc
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG  249 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g  249 (712)
                      ..++++.+++.   +|..  .++++|.|+.|=|..-.+ +.||++..|
T Consensus       242 ~~~~~v~v~~~---~g~~--~~~~ad~vLvAiGR~Pn~-~~LgLe~~G  283 (454)
T COG1249         242 KKDDGVLVTLE---DGEG--GTIEADAVLVAIGRKPNT-DGLGLENAG  283 (454)
T ss_pred             ecCCeEEEEEe---cCCC--CEEEeeEEEEccCCccCC-CCCChhhcC
Confidence            98888777776   3321  278999999999966443 344544443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.58  E-value=0.00065  Score=76.71  Aligned_cols=33  Identities=27%  Similarity=0.653  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+||||||+|+.+|..|+++|.+|+||||.+
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            379999999999999999999999999999875

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.58  E-value=0.00085  Score=73.12  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---CCc---eeecCH---------------------hHHHHHHh
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST---HPQ---AHFINN---------------------RYALVFRK   97 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~---~~r---a~~i~~---------------------rtmeilr~   97 (712)
                      ||+|||+|.+||++|+.|.+. .+|+|+-|.+....   .-+   +..+.+                     .+.+.+-.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999999999 99999999876521   111   111111                     11111111


Q ss_pred             -hhcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccc---cChhHHHHHHHHHHHhcCceee
Q 005134           98 -LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH---FSQYKLNKLLLKQLEKLNFKIC  173 (712)
Q Consensus        98 -l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~---i~q~~Le~~L~~~~~~~g~~~~  173 (712)
                       -+-..+.+...|.+.+....-.+...+.|-                .+-....+   -.=..+.+.|.+++++.+.   
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg----------------HS~rRIlH~~~~TG~~I~~~L~~~v~~~p~---  148 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGG----------------HSRRRILHAADATGKEIMTALLKKVRNRPN---  148 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecc----------------cCCceEEEecCCccHHHHHHHHHHHhcCCC---
Confidence             011223334445443321111111111110                00000111   1224677888888887543   


Q ss_pred             ccCccccccccccccceEEeCcEEEEEEEcCC-eE-EEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          174 TSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       174 ~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v-~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                                     +++..++.+..+..+++ ++ -+.+.  +.+. +..+++++.||-|.|.-+.+
T Consensus       149 ---------------I~v~e~~~a~~li~~~~~~~~Gv~~~--~~~~-~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         149 ---------------ITVLEGAEALDLIIEDGIGVAGVLVL--NRNG-ELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             ---------------cEEEecchhhhhhhcCCceEeEEEEe--cCCC-eEEEEecCeEEEecCCCccc
Confidence                           69999999999988777 43 23333  1222 35689999999999987765

>PLN02487 zeta-carotene desaturase

Probab=97.58  E-value=0.00013  Score=83.67  Aligned_cols=64  Identities=22%  Similarity=0.346  Sum_probs=50.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CCc-----eee---cCHhHHHHHHhhhcHHHHH
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HPQ-----AHF---INNRYALVFRKLDGLAEEI  105 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~--------~~r-----a~~---i~~rtmeilr~l~Gl~d~l  105 (712)
                      ...+|+|||||++||++|+.|+++|++|+|+|+++...-        .+.     .+.   ..+..+++++++ |+.+++
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~  152 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENL  152 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCcccc
Confidence            346999999999999999999999999999999886531        111     111   246789999999 998776


Q ss_pred             H
Q 005134          106 E  106 (712)
Q Consensus       106 ~  106 (712)
                      .
T Consensus       153 ~  153 (569)
T PLN02487        153 L  153 (569)
T ss_pred             c
Confidence            4

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.58  E-value=0.00065  Score=76.98  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++||+||||||+|+.+|+.++++|.+|.|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.57  E-value=0.00032  Score=77.45  Aligned_cols=36  Identities=17%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~   78 (712)
                      ..+|+|||||++|+++|..|+++|.  +++|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            4589999999999999999999987  79999988654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.56  E-value=7e-05  Score=85.22  Aligned_cols=35  Identities=34%  Similarity=0.591  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .||+|||||++||++|..|+++|++|+|+||+..+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            68999999999999999999999999999999755

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.56  E-value=0.00068  Score=74.86  Aligned_cols=34  Identities=38%  Similarity=0.506  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4799999999999999999999999999998763

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.54  E-value=8.5e-05  Score=83.58  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+.+|+|||||++||++|..|...|++|+|+|.+..+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            55689999999999999999999999999999998754

>TIGR02730 carot_isom carotene isomerase

Probab=97.53  E-value=8.5e-05  Score=84.53  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=33.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|..|+++|.+|+|+||+..+
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            58999999999999999999999999999999865

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.53  E-value=0.00011  Score=83.11  Aligned_cols=61  Identities=23%  Similarity=0.364  Sum_probs=46.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------Cce-------ee---cCHhHHHHHHhhhcHHHHHH
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQA-------HF---INNRYALVFRKLDGLAEEIE  106 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra-------~~---i~~rtmeilr~l~Gl~d~l~  106 (712)
                      +|+|||||++||++|..|+++|++|+|+|+++.+.-.      ..+       +.   ..++.+++++++ |+.+.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~~   77 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNLL   77 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCccccc
Confidence            5899999999999999999999999999998765211      011       11   236678888888 8876654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.53  E-value=0.0013  Score=74.35  Aligned_cols=101  Identities=23%  Similarity=0.403  Sum_probs=73.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-+                   ..                      
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~----------------------  211 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------NE----------------------  211 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cc----------------------
Confidence            5899999999999999999999999999997653210                   00                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                    ...+...|.+.+++.|+                   ++++++++++++.+
T Consensus       212 ------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  242 (466)
T PRK07818        212 ------------------------------DAEVSKEIAKQYKKLGV-------------------KILTGTKVESIDDN  242 (466)
T ss_pred             ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence                                          01122334555666676                   99999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++.+++++.. .+|+  ..++.+|.||.|-|...
T Consensus       243 ~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~p  273 (466)
T PRK07818        243 GSKVTVTVSK-KDGK--AQELEADKVLQAIGFAP  273 (466)
T ss_pred             CCeEEEEEEe-cCCC--eEEEEeCEEEECcCccc
Confidence            6666655542 2343  34799999999999654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.52  E-value=0.001  Score=75.30  Aligned_cols=102  Identities=22%  Similarity=0.338  Sum_probs=74.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|||+.+.+..                   ...                     
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d---------------------  223 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AAD---------------------  223 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cCC---------------------
Confidence            5899999999999999999999999999998764310                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...+.+.+++.|+                   +++.++++++++.+
T Consensus       224 -------------------------------~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~  253 (475)
T PRK06327        224 -------------------------------EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKTG  253 (475)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEEc
Confidence                                           0122234444555665                   99999999999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++.+.+.+. +|  ++.++.+|.||.|-|....
T Consensus       254 ~~~v~v~~~~~-~g--~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        254 GKGVSVAYTDA-DG--EAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             CCEEEEEEEeC-CC--ceeEEEcCEEEEccCCccC
Confidence            77776665421 23  2357999999999996654

>TIGR02053 MerA mercuric reductase

Probab=97.52  E-value=0.0011  Score=74.73  Aligned_cols=100  Identities=14%  Similarity=0.291  Sum_probs=72.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   ...                     
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d---------------------  206 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------REE---------------------  206 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------ccC---------------------
Confidence            6899999999999999999999999999998754310                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~  236 (463)
T TIGR02053       207 -------------------------------PEISAAVEEALAEEGI-------------------EVVTSAQVKAVSVR  236 (463)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEc
Confidence                                           0111234444555665                   99999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++.+.+++..  ++.  ..++.+|.||.|-|...
T Consensus       237 ~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       237 GGGKIITVEK--PGG--QGEVEADELLVATGRRP  266 (463)
T ss_pred             CCEEEEEEEe--CCC--ceEEEeCEEEEeECCCc
Confidence            6666665542  121  24789999999999654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=97.51  E-value=0.00097  Score=75.28  Aligned_cols=100  Identities=18%  Similarity=0.318  Sum_probs=73.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                   +..                     
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~~---------------------  211 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------RED---------------------  211 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------ccC---------------------
Confidence            5899999999999999999999999999998764310                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+.+.+.+.+++.|+                   ++++++++++++.+
T Consensus       212 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~  241 (463)
T PRK06370        212 -------------------------------EDVAAAVREILEREGI-------------------DVRLNAECIRVERD  241 (463)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence                                           0112234455566666                   99999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++++.+.+... ++   ..++.+|.||.|-|...
T Consensus       242 ~~~~~v~~~~~-~~---~~~i~~D~Vi~A~G~~p  271 (463)
T PRK06370        242 GDGIAVGLDCN-GG---APEITGSHILVAVGRVP  271 (463)
T ss_pred             CCEEEEEEEeC-CC---ceEEEeCEEEECcCCCc
Confidence            77766655432 22   24689999999999654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=0.0012  Score=74.54  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            35899999999999999999999999999998764

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.00012  Score=80.35  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++|+|+|||++||++|..|+.+|++|+|+|+++.+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~   35 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL   35 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence            47999999999999999999999999999999875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.44  E-value=0.00012  Score=82.58  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4599999999999999999999999999999983

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.42  E-value=0.00011  Score=83.72  Aligned_cols=33  Identities=36%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      |+|||||++||++|..|++.|++|+|+||+..+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            699999999999999999999999999999865

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.42  E-value=0.00019  Score=79.59  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~L-ar~Gi~v~lvEr~~~~   78 (712)
                      ...|+||||||+||.+|..| ++.|++|+||||.+.+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            46899999999999999965 5779999999999876

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.42  E-value=0.00014  Score=82.17  Aligned_cols=34  Identities=41%  Similarity=0.681  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999999986

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.42  E-value=0.00015  Score=74.49  Aligned_cols=51  Identities=22%  Similarity=0.449  Sum_probs=41.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhh
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL   98 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l   98 (712)
                      +++||+|||||.+||++|+.|+++|.+|.||-+...      +.-++..++.+|.++
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs------ALhfsSGslDlL~~l   51 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS------ALHFSSGSLDLLGRL   51 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh------hhhcccccHHHhhcC
Confidence            369999999999999999999999999999988754      334455566677666

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.40  E-value=0.00015  Score=77.94  Aligned_cols=37  Identities=27%  Similarity=0.562  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..-+|||||||++|+++|+.|++.|++|.|+||.+..
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi  159 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI  159 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            3468999999999999999999999999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.39  E-value=0.0014  Score=74.19  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            5899999999999999999999999999998864

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.38  E-value=0.00018  Score=78.22  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|..|++.|.+|+|+|++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            69999999999999999999999999999997643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.37  E-value=0.0014  Score=66.37  Aligned_cols=167  Identities=17%  Similarity=0.248  Sum_probs=88.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCC-CCCCceeec-------------CHhHHHHHHhhhcHHH
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAF-STHPQAHFI-------------NNRYALVFRKLDGLAE  103 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G------i~v~lvEr~~~~-~~~~ra~~i-------------~~rtmeilr~l~Gl~d  103 (712)
                      .+|+|||||+.|..+|++|++++      +.++|||++.-. ...+++.++             .+-+..+-+   +|.|
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~---~Lsd   87 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHE---ELSD   87 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHH---HHHH
Confidence            78999999999999999999998      899999988643 222333221             111222222   3344


Q ss_pred             HHHhcCCCccccceeEe------ee---cCCCCeeeeecCCCc---cccccccCCccccccChhHHHHHHHHHHHhcCce
Q 005134          104 EIERSQPPVDLWRKFIY------CT---SVTGPILGSVDHMQP---QDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFK  171 (712)
Q Consensus       104 ~l~~~~~~~~~~~~~~~------~~---~~~G~~l~~~~~~~~---~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~  171 (712)
                      ++.-    .+.|.....      ..   ...++.-..+++...   +......+.....++.-..|.+.+++.+.+.|. 
T Consensus        88 eydG----vnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~-  162 (380)
T KOG2852|consen   88 EYDG----VNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGG-  162 (380)
T ss_pred             hhcC----cccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcC-
Confidence            4322    222221100      00   000000000111111   111111222334566778899999999998874 


Q ss_pred             eeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          172 ICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                                       +++.+|+ |.++..+...+.-.......++  -.....+-+|.+-|.++.
T Consensus       163 -----------------V~lv~Gk-v~ev~dEk~r~n~v~~ae~~~t--i~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  163 -----------------VKLVFGK-VKEVSDEKHRINSVPKAEAEDT--IIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             -----------------eEEEEee-eEEeecccccccccchhhhcCc--eEEeeeeEEEEecCCCch
Confidence                             5888885 4455433333222211111121  145678899999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.36  E-value=0.00018  Score=86.67  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            3479999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.34  E-value=0.0015  Score=73.17  Aligned_cols=35  Identities=34%  Similarity=0.519  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            35799999999999999999999999999999764

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.32  E-value=0.0019  Score=69.72  Aligned_cols=67  Identities=19%  Similarity=0.293  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       157 Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      +.+-+++.++++|.                   +++|+++|..++..++.+.....  .+|    +++.+|+||.|=|..
T Consensus       175 vvkni~~~l~~~G~-------------------ei~f~t~VeDi~~~~~~~~~v~~--~~g----~~i~~~~vvlA~Grs  229 (486)
T COG2509         175 VVKNIREYLESLGG-------------------EIRFNTEVEDIEIEDNEVLGVKL--TKG----EEIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHHHhcCc-------------------EEEeeeEEEEEEecCCceEEEEc--cCC----cEEecCEEEEccCcc
Confidence            44557788888887                   99999999999988876443332  245    379999999999966


Q ss_pred             ch-----hhcccCCCcc
Q 005134          237 ST-----VRKLVGIDLV  248 (712)
Q Consensus       237 S~-----VR~~lgi~~~  248 (712)
                      +.     +-+++|+.+.
T Consensus       230 g~dw~~~l~~K~Gv~~~  246 (486)
T COG2509         230 GRDWFEMLHKKLGVKMR  246 (486)
T ss_pred             hHHHHHHHHHhcCcccc
Confidence            52     3345566554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.32  E-value=0.0022  Score=72.66  Aligned_cols=35  Identities=29%  Similarity=0.577  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            35899999999999999999999999999998864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.32  E-value=0.0029  Score=71.70  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~   75 (712)
                      .++||+||||||+|.++|+.+++. |.+|.||||.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            358999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.30  E-value=0.0028  Score=71.54  Aligned_cols=99  Identities=16%  Similarity=0.266  Sum_probs=72.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                .   .                     
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~---d---------------------  217 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------------E---D---------------------  217 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC----------------C---C---------------------
Confidence            47999999999999999999999999999986543100                0   0                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...|.+.+++.|+                   +++.++++++++.+
T Consensus       218 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~  247 (466)
T PRK07845        218 -------------------------------ADAAEVLEEVFARRGM-------------------TVLKRSRAESVERT  247 (466)
T ss_pred             -------------------------------HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEEe
Confidence                                           0112234455566666                   89999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++++.+.   +|+    ++.+|.||.|-|.....
T Consensus       248 ~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        248 GDGVVVTLT---DGR----TVEGSHALMAVGSVPNT  276 (466)
T ss_pred             CCEEEEEEC---CCc----EEEecEEEEeecCCcCC
Confidence            777665543   343    68999999999977543

>TIGR02053 MerA mercuric reductase

Probab=97.29  E-value=0.00024  Score=80.25  Aligned_cols=33  Identities=21%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.29  E-value=0.0019  Score=71.24  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             cceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       188 ~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +.+|+++++|++|+.++++|++++.   +|+    +++||+||.|=......+
T Consensus       223 g~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  223 GGEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             GGGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHHT
T ss_pred             CceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhhh
Confidence            3589999999999999999887775   453    789999999887765554

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=97.27  E-value=0.00028  Score=79.48  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=33.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~  174 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE  174 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            457999999999999999999999999999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.27  E-value=0.00023  Score=86.26  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=33.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            578999999999999999999999999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.24  E-value=0.0026  Score=71.49  Aligned_cols=97  Identities=20%  Similarity=0.381  Sum_probs=70.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                   ++.                     
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------~~d---------------------  206 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------GFD---------------------  206 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------ccC---------------------
Confidence            4799999999999999999999999999998654210                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...+.+.+++.|+                   +++.++++++++.+
T Consensus       207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  236 (446)
T TIGR01424       207 -------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITKT  236 (446)
T ss_pred             -------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence                                           0112234445566666                   99999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++++.+++.   +|+    ++.+|.||-|-|...
T Consensus       237 ~~~~~v~~~---~g~----~i~~D~viva~G~~p  263 (446)
T TIGR01424       237 DDGLKVTLS---HGE----EIVADVVLFATGRSP  263 (446)
T ss_pred             CCeEEEEEc---CCc----EeecCEEEEeeCCCc
Confidence            777665543   342    689999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum

Probab=97.23  E-value=0.0018  Score=62.18  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             CCCCCcceeec-CCCCcceeeeCCCCCcceEEEEEcCCccc-hHHHHHHHHhhhhcC-----------------CceEEE
Q 005134          555 GSRLPHMNVRV-LSTEIISTLDLVSGDKVEFLLIIAPVEES-YHLARAALKVAEDFK-----------------VPTKVC  615 (712)
Q Consensus       555 G~R~PH~~l~~-~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~-~~~~~aa~~~~~~~g-----------------~~~~~~  615 (712)
                      |.|+|-+.+.+ .++..+-+.+++..+ +.|-++.+++... ..........++.+.                 --+.+.
T Consensus         1 G~R~~~a~V~r~aD~~p~~L~~~~~ad-GrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~   79 (167)
T cd02979           1 GRRFPSAPVVRQADALPVHLGHRLPAD-GRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVV   79 (167)
T ss_pred             CCcCCCceEEEecCCCCHhHhhhccCC-CCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEE
Confidence            78999998876 345556666666543 2588887765321 123333334443331                 125556


Q ss_pred             EEcCCC-Ccchhhhhhcccc---------CCCCcccchhhhcccCCccchhhhhccc--CCceEEEcCCceEEEeeC
Q 005134          616 VLWPAG-TTNEVEFRSAAEL---------APWKNYIDVEEVKRSSDSLSWWRICKMT--DMGAILVRPDDHIAWRSK  680 (712)
Q Consensus       616 ~~~~~~-~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~gavLVRPDg~VaWr~~  680 (712)
                      .|..+. .+.|-.+- +...         .-|..|.|-..  .....+.-++.+|+.  ..++|+|||||||+|.+.
T Consensus        80 ~I~~~~~~~~e~~dl-P~~~~p~~~~~~~~~~~v~~d~~~--~~~~~~~~~~~~gv~~~~g~vvvvRPDgyVg~~~~  153 (167)
T cd02979          80 TIHAAPRREIELLDL-PAVLRPFGEKKGWDYEKIYADDDS--YHEGHGDAYEKYGIDPERGAVVVVRPDQYVALVGP  153 (167)
T ss_pred             EEecCCccccchhhC-cHhhcCCCCccccceeeEEecCcc--ccCCcccHHHhhCCCCCCCCEEEECCCCeEEEEec
Confidence            653221 11111111 1111         12233444110  000113456678998  457899999999999875

PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.23  E-value=0.0015  Score=71.13  Aligned_cols=34  Identities=9%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~   78 (712)
                      +|||||||++|+.+|..|.++   +.+++|||+++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            589999999999999999754   6899999988763

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07846 mycothione reductase; Reviewed

Probab=97.21  E-value=0.0031  Score=70.85  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            36899999999999999999999999999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.21  E-value=0.0024  Score=70.00  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||++|+++|..|.++  ..+++||++.+..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            5899999999999999999886  5689999988753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.20  E-value=0.0024  Score=71.75  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            35899999999999999999999999999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.19  E-value=0.00033  Score=77.88  Aligned_cols=39  Identities=26%  Similarity=0.391  Sum_probs=36.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      ++++||+|||+|.+|+++|..|++.|.+|+++||+...-
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG   40 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG   40 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence            457999999999999999999999999999999998763

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00052  Score=70.97  Aligned_cols=112  Identities=21%  Similarity=0.368  Sum_probs=71.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lv-Er~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ...+|||||||||+|.++|++-+|.|++.=|+ ||--.               .+|+.+ +++.-+   +.         
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG---------------QvldT~-~IENfI---sv---------  260 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG---------------QVLDTM-GIENFI---SV---------  260 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC---------------eecccc-chhhee---cc---------
Confidence            34599999999999999999999999986443 33211               223333 332100   00         


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                                                |    ...-.+|...|.++++++.+                   ++.-..+.++
T Consensus       261 --------------------------~----~teGpkl~~ale~Hv~~Y~v-------------------Dimn~qra~~  291 (520)
T COG3634         261 --------------------------P----ETEGPKLAAALEAHVKQYDV-------------------DVMNLQRASK  291 (520)
T ss_pred             --------------------------c----cccchHHHHHHHHHHhhcCc-------------------hhhhhhhhhc
Confidence                                      0    01123566778888887766                   5555555666


Q ss_pred             EEEc---CCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          200 VSAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       200 v~~~---~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      ++..   ++-..+++.   +|.    .++++-||-+.|++
T Consensus       292 l~~a~~~~~l~ev~l~---nGa----vLkaktvIlstGAr  324 (520)
T COG3634         292 LEPAAVEGGLIEVELA---NGA----VLKARTVILATGAR  324 (520)
T ss_pred             ceecCCCCccEEEEec---CCc----eeccceEEEecCcc
Confidence            6553   444566665   453    68899999999986

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0004  Score=71.38  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=33.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|.+|||||.+|+.+|..|+++|.+|+||||++..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI   36 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI   36 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence            79999999999999999999999999999999865

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.17  E-value=0.002  Score=66.09  Aligned_cols=49  Identities=12%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             ceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       189 ~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++|..+++|+.+...++.|.-...-..+|+  ...+.++-||-|.|..+--
T Consensus       160 ~ki~~nskvv~il~n~gkVsgVeymd~sge--k~~~~~~~VVlatGGf~ys  208 (477)
T KOG2404|consen  160 VKILLNSKVVDILRNNGKVSGVEYMDASGE--KSKIIGDAVVLATGGFGYS  208 (477)
T ss_pred             HhhhhcceeeeeecCCCeEEEEEEEcCCCC--ccceecCceEEecCCcCcC
Confidence            488999999999988887765443333443  4678999999999988743

>PLN02507 glutathione reductase

Probab=97.17  E-value=0.0025  Score=72.59  Aligned_cols=34  Identities=9%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  237 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL  237 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            5799999999999999999999999999998753

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.15  E-value=0.00048  Score=77.32  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ....+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34579999999999999999999999999999997643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.13  E-value=0.00044  Score=82.08  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...+|+||||||+||++|..|++.|++|+|||+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            34789999999999999999999999999999875

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.11  E-value=0.0005  Score=82.64  Aligned_cols=36  Identities=31%  Similarity=0.574  Sum_probs=33.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            468999999999999999999999999999998754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.09  E-value=0.00063  Score=74.44  Aligned_cols=49  Identities=24%  Similarity=0.496  Sum_probs=41.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhh
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL   98 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l   98 (712)
                      +||+|||||++|+++|+.|+++|.+|+|+|+...      +..++..++.+|..+
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~------~~~~s~gs~d~L~~~   49 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS------ALHFSSGSLDLLSRL   49 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc------hhhhhhHHHhHhhhc
Confidence            5899999999999999999999999999998652      455677777777665

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.08  E-value=0.0061  Score=68.33  Aligned_cols=33  Identities=24%  Similarity=0.487  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~  191 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            489999999999999999999999999999865

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.07  E-value=0.0057  Score=69.02  Aligned_cols=34  Identities=32%  Similarity=0.678  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            5899999999999999999999999999998764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.07  E-value=0.00054  Score=80.63  Aligned_cols=36  Identities=31%  Similarity=0.564  Sum_probs=33.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            469999999999999999999999999999998654

>PLN02546 glutathione reductase

Probab=97.06  E-value=0.00073  Score=77.54  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      ..+|||+||||||+|+.+|..++++|.+|.|||+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3458999999999999999999999999999996

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.04  E-value=0.00072  Score=72.08  Aligned_cols=67  Identities=22%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCCC---------------CCce----eecCHhHHHHHHhhh
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFST---------------HPQA----HFINNRYALVFRKLD   99 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v--~lvEr~~~~~~---------------~~ra----~~i~~rtmeilr~l~   99 (712)
                      ...++|+|||||++||++|++|++++-+|  +|+|+.+..--               .||.    .-...++++++..+ 
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-   87 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-   87 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-
Confidence            34589999999999999999999998766  45998875411               1111    11223678888998 


Q ss_pred             cHHHHHHhc
Q 005134          100 GLAEEIERS  108 (712)
Q Consensus       100 Gl~d~l~~~  108 (712)
                      |+.+++...
T Consensus        88 Gl~~e~~~i   96 (491)
T KOG1276|consen   88 GLEDELQPI   96 (491)
T ss_pred             Cccceeeec
Confidence            998777554

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.04  E-value=0.00049  Score=72.66  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~   79 (712)
                      |||||||+|++|+++|..|++.| .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            69999999999999999999997 7999999987643

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.03  E-value=0.00091  Score=77.96  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|.++|+.++++|.+|+|||+.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4689999999999999999999999999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.03  E-value=0.00073  Score=76.40  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=34.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3469999999999999999999999999999998754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.02  E-value=0.005  Score=68.71  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            5899999999999999999999999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.01  E-value=0.0069  Score=68.11  Aligned_cols=34  Identities=18%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||+.|+-+|..|++.|.+|+|||+.+.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            5899999999999999999999999999998653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.00  E-value=0.00066  Score=83.15  Aligned_cols=36  Identities=33%  Similarity=0.512  Sum_probs=33.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            468999999999999999999999999999998654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.98  E-value=0.00089  Score=75.42  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            3478999999999999999999999999999998754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.98  E-value=0.0029  Score=67.48  Aligned_cols=154  Identities=19%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccccee
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~  118 (712)
                      .+..+|++.||-||.-|++|++|..++ .+++.+||.+..+.||... +...+|++-    =+ ..+.....|..... |
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv~----Fl-kDLVTl~~PTs~yS-F   74 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQVP----FL-KDLVTLVDPTSPYS-F   74 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCcccccc----ch-hhhccccCCCCchH-H
Confidence            356799999999999999999999986 7899999999999998553 333333221    11 12222222221111 1


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      ..+....|+...         |    --....+++|.+....+.-.+..+.                    .++||.+|+
T Consensus        75 LNYL~~h~RLy~---------F----l~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V~  121 (436)
T COG3486          75 LNYLHEHGRLYE---------F----LNYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEVT  121 (436)
T ss_pred             HHHHHHcchHhh---------h----hhhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCeec
Confidence            111111221111         0    0112457889999999988887763                    789999999


Q ss_pred             EEEE-cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          199 SVSA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       199 ~v~~-~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      .|.. +.+.+...+....++    ...+|+=||..-|..-
T Consensus       122 ~i~~~~~d~~~~~~~~t~~~----~~y~ar~lVlg~G~~P  157 (436)
T COG3486         122 DISSLDGDAVVRLFVVTANG----TVYRARNLVLGVGTQP  157 (436)
T ss_pred             cccccCCcceeEEEEEcCCC----cEEEeeeEEEccCCCc
Confidence            7732 223333322222233    2567777776666543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.96  E-value=0.012  Score=66.80  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  211 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR  211 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence            4799999999999999999999999999986

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02785 Protein HOTHEAD

Probab=96.95  E-value=0.0014  Score=75.84  Aligned_cols=41  Identities=20%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             cCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           37 IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        37 ~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+-...++|+||||||.+|+.+|..|++ +.+|+|||+...+
T Consensus        49 ~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~   89 (587)
T PLN02785         49 SSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP   89 (587)
T ss_pred             cccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence            3444567999999999999999999999 6999999998753

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.94  E-value=0.0013  Score=67.74  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCce
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA   84 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra   84 (712)
                      +...||+|||||.+||.+|..|+.+|.+|+|+|+..+-+-.+.+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            56799999999999999999999999999999998876554443

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.93  E-value=0.0051  Score=74.03  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS   79 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~~   79 (712)
                      +.+|+|||+|++|+.+|..|.++    +++++||++.+.+.
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            45899999999999999999764    58999999988753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.93  E-value=0.00087  Score=80.22  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            346999999999999999999999999999998654

>PRK14694 putative mercuric reductase; Provisional

Probab=96.92  E-value=0.011  Score=66.99  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            58999999999999999999999999999863

>PRK02106 choline dehydrogenase; Validated

Probab=96.91  E-value=0.00096  Score=77.18  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~   77 (712)
                      ..++||||||||++|+.+|..|++ .|++|+|||+.+.
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            556999999999999999999999 7999999999964

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.90  E-value=0.007  Score=72.71  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~  173 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP  173 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence            479999999999999999999999999999765

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.89  E-value=0.012  Score=63.44  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCC----ceeecCHhHHHHHHhhhcHHHHHHhcCCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~~~~~----ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~  114 (712)
                      .....|+|||||.++.-.++.|.+++-  +|.++=|++...+..    --..++|.-++.|..+ -  ++.+..-.... 
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l-~--~~~R~~~l~~~-  263 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL-P--DEERRELLREQ-  263 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS----HHHHHHHHHHT-
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC-C--HHHHHHHHHHh-
Confidence            355789999999999999999999875  799999988653211    1246788888888766 2  22222110000 


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhH---HHHHHHHH-HHhcCceeeccCccccccccccccce
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK---LNKLLLKQ-LEKLNFKICTSEGTEGLHNHLLQGRE  190 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~---Le~~L~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (712)
                       +.                             ...-.++...   |-+.|++. +...                  ..+.
T Consensus       264 -~~-----------------------------~ny~~i~~~~l~~iy~~lY~~~v~g~------------------~~~~  295 (341)
T PF13434_consen  264 -RH-----------------------------TNYGGIDPDLLEAIYDRLYEQRVSGR------------------GRLR  295 (341)
T ss_dssp             -GG-----------------------------GTSSEB-HHHHHHHHHHHHHHHHHT---------------------SE
T ss_pred             -Hh-----------------------------hcCCCCCHHHHHHHHHHHHHHHhcCC------------------CCeE
Confidence             00                             0001122222   22223332 2211                  1248


Q ss_pred             EEeCcEEEEEEEcCC-eEEEEEEeccCCceeeEEEEecEEEeccCC
Q 005134          191 ILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGA  235 (712)
Q Consensus       191 v~~g~~v~~v~~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~  235 (712)
                      ++-+++|++++.+++ ++.+++++...+  +..++.+|+||.|.|-
T Consensus       296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  296 LLPNTEVTSAEQDGDGGVRLTLRHRQTG--EEETLEVDAVILATGY  339 (341)
T ss_dssp             EETTEEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred             EeCCCEEEEEEECCCCEEEEEEEECCCC--CeEEEecCEEEEcCCc
Confidence            999999999999884 899999875555  3578999999999984

>PLN02529 lysine-specific histone demethylase 1

Probab=96.89  E-value=0.0012  Score=77.63  Aligned_cols=37  Identities=38%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....+|+|||||++||++|..|+++|++|+|+|++..
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            3457999999999999999999999999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.88  E-value=0.0075  Score=72.64  Aligned_cols=109  Identities=16%  Similarity=0.271  Sum_probs=74.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -.|+|||||+.|+-+|..|++.|.+|+|+|+.+..-.               +++   .                     
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------------~~l---d---------------------  186 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------------EQL---D---------------------  186 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------------hhc---C---------------------
Confidence            4799999999999999999999999999998653100               001   0                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ......|.+.+++.|+                   +++.+++++++..+
T Consensus       187 -------------------------------~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~  216 (847)
T PRK14989        187 -------------------------------QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE  216 (847)
T ss_pred             -------------------------------HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence                                           0122345566667776                   99999999999765


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh--hcccCCC
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGID  246 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V--R~~lgi~  246 (712)
                      ++.....+.+. +|+    ++.+|+||.|-|.+...  .+..|+.
T Consensus       217 ~~~~~~~v~~~-dG~----~i~~D~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        217 GVEARKTMRFA-DGS----ELEVDFIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             CCCceEEEEEC-CCC----EEEcCEEEECCCcccCchHHhhcCcc
Confidence            43222233322 453    68999999999987543  3444543

>PRK07846 mycothione reductase; Reviewed

Probab=96.86  E-value=0.008  Score=67.59  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++||+||||||+|.++|..  ..|.+|.||||..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            3899999999999988865  4699999999853

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.86  E-value=0.012  Score=61.92  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            589999999999999999999999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.86  E-value=0.0079  Score=67.40  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            4799999999999999999999999999998763

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.85  E-value=0.0099  Score=66.69  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            579999999999999999999999999998765

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.85  E-value=0.0073  Score=68.44  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|+..   |.+|+|+|+.+.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~  224 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM  224 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence            35799999999999999877654   999999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00058 glutathione reductase; Provisional

Probab=96.85  E-value=0.008  Score=69.08  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            45799999999999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.83  E-value=0.0013  Score=77.40  Aligned_cols=36  Identities=31%  Similarity=0.523  Sum_probs=33.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            468999999999999999999999999999998764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0038  Score=60.95  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....+|+|||.||++-++|++++|.-++.+|||-.
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~   40 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM   40 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence            34469999999999999999999999999999944

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.81  E-value=0.0089  Score=65.88  Aligned_cols=35  Identities=34%  Similarity=0.565  Sum_probs=33.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||+|+.||.+|..|+++|++|+++|+.+.+
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~  171 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL  171 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence            69999999999999999999999999999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.79  E-value=0.014  Score=66.50  Aligned_cols=31  Identities=35%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  213 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR  213 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence            3799999999999999999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=96.79  E-value=0.014  Score=66.14  Aligned_cols=32  Identities=16%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            57999999999999999999999999999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.77  E-value=0.0014  Score=73.88  Aligned_cols=37  Identities=27%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3468999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.75  E-value=0.0054  Score=63.33  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCC---cee-ec--CHhHHHHHHhhhcHH-HHHHhcCCCc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THP---QAH-FI--NNRYALVFRKLDGLA-EEIERSQPPV  112 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~~~---ra~-~i--~~rtmeilr~l~Gl~-d~l~~~~~~~  112 (712)
                      ++.+|-|||||.+|.-+|..|+++||+|.|+|-++...  .|-   -+. ++  +-++..+.... ||. .+++..+.-.
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~nav-GlLk~EMR~lgSli   80 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAV-GLLKAEMRLLGSLI   80 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhh-HHHHHHHHHhhhHH
Confidence            45789999999999999999999999999999886431  111   111 11  12333344444 543 4444444221


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCc
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNF  170 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~  170 (712)
                      -..                .+.      . ..+....+.++|+.|-+.+-+.++.++.
T Consensus        81 i~~----------------Ad~------~-~VPAGgALAVDR~~Fs~~vT~~l~~hpl  115 (439)
T COG1206          81 IEA----------------ADK------H-RVPAGGALAVDRDGFSQAVTEKLENHPL  115 (439)
T ss_pred             hhh----------------hhh------c-cCCCCceeeecHhHHHHHHHHHHhcCCC
Confidence            000                000      0 0111224577899999999998888765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.73  E-value=0.0065  Score=72.95  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~   78 (712)
                      |+|||||++|+.+|..|.++   +++|+|||+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            68999999999999998775   5799999998865

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.73  E-value=0.0016  Score=72.44  Aligned_cols=36  Identities=36%  Similarity=0.657  Sum_probs=34.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.+|||+||||||+|.++|+.+++.|.+|.|+|+..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            457999999999999999999999999999999996

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.72  E-value=0.002  Score=69.95  Aligned_cols=37  Identities=35%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+|||||++|+.+|..|++.|++|+|||+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4468999999999999999999999999999998754

>TIGR03452 mycothione_red mycothione reductase

Probab=96.68  E-value=0.013  Score=65.94  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++||+||||||+|..+|.  +.+|.+|.||||..
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            589999999999999864  45799999999854

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.67  E-value=0.0017  Score=75.15  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=33.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.66  E-value=0.016  Score=66.38  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            589999999999999999999999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.66  E-value=0.0019  Score=75.78  Aligned_cols=36  Identities=28%  Similarity=0.596  Sum_probs=33.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            578999999999999999999999999999999864

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.61  E-value=0.0017  Score=72.27  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=33.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|.||||||+||++|..|+++|+.|+|+|+.+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            78999999999999999999999999999999865

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.61  E-value=0.018  Score=66.03  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||.+|+-+|..|+..|.+|+|+++.+.
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            4899999999999999999999999999987654

>PRK13748 putative mercuric reductase; Provisional

Probab=96.60  E-value=0.02  Score=66.28  Aligned_cols=32  Identities=25%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            57999999999999999999999999999974

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.56  E-value=0.017  Score=67.42  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|||+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            4799999999999999999999999999998765

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.50  E-value=0.0029  Score=71.76  Aligned_cols=36  Identities=31%  Similarity=0.501  Sum_probs=33.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|+++|++|+|||+.+.+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            369999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK10262 thioredoxin reductase; Provisional

Probab=96.48  E-value=0.026  Score=60.42  Aligned_cols=34  Identities=12%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            5899999999999999999999999999998753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.29  E-value=0.025  Score=63.09  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=26.7

Q ss_pred             CEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar--------------~Gi~v~lvEr~~   76 (712)
                      .|+|||||++|+-+|..|+.              .|.+|+|||+.+
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~  220 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS  220 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence            79999999999999999975              367777777654

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.27  E-value=0.0037  Score=65.78  Aligned_cols=49  Identities=29%  Similarity=0.398  Sum_probs=38.3

Q ss_pred             ccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           24 GYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        24 ~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +.++++++|..+      ....|.|||+||+|+.+|..|-++  +++|.|+||.+.|
T Consensus         7 ~~~~~r~~s~qs------~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen    7 SPSFCRHFSTQS------STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             hhHHHHHhhhcc------CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            344556555555      124899999999999999988774  7999999999876

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.02  Score=62.77  Aligned_cols=34  Identities=32%  Similarity=0.550  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~   78 (712)
                      ++|+|||+|++|+.+|..|.+.    +. +.|||+++..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEecccccc
Confidence            6899999999999999999876    33 9999999865

>PLN02546 glutathione reductase

Probab=96.24  E-value=0.04  Score=63.42  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            35899999999999999999999999999998654

>PRK13984 putative oxidoreductase; Provisional

Probab=96.18  E-value=0.0054  Score=71.70  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+|||+||+|+++|..|+++|++|+|||+.+.+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3468999999999999999999999999999998754

>PLN02976 amine oxidase

Probab=96.15  E-value=0.0057  Score=75.11  Aligned_cols=37  Identities=32%  Similarity=0.568  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            3478999999999999999999999999999998654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.14  E-value=0.015  Score=64.39  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+||+|||||-+|+-+|++.+|.|.+++|+--+..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence            459999999999999999999999999999877654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.01  E-value=0.041  Score=60.02  Aligned_cols=38  Identities=16%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS   79 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~   79 (712)
                      .+..|+|||||-+||.+|..|.++-  +++++|||+....
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            3478999999999999999999984  9999999998654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=95.96  E-value=0.0084  Score=62.48  Aligned_cols=36  Identities=19%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|.|||+|++||++|..|+++ .+|+|||.....
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl   42 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL   42 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence            457999999999999999999986 799999988754

>TIGR01810 betA choline dehydrogenase

Probab=95.93  E-value=0.006  Score=70.14  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      ||||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999998 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.92  E-value=0.031  Score=60.92  Aligned_cols=58  Identities=26%  Similarity=0.424  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       157 Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      +.+...+.+++.|+                   +|+.++.|++++++  +|  ++.   +|.   ..|.++.+|=|-|.+
T Consensus       211 l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~--~v--~~~---~g~---~~I~~~tvvWaaGv~  261 (405)
T COG1252         211 LSKYAERALEKLGV-------------------EVLLGTPVTEVTPD--GV--TLK---DGE---EEIPADTVVWAAGVR  261 (405)
T ss_pred             HHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--cE--EEc---cCC---eeEecCEEEEcCCCc
Confidence            34445556677787                   99999999998764  43  343   342   169999999999987


Q ss_pred             -chhhccc
Q 005134          237 -STVRKLV  243 (712)
Q Consensus       237 -S~VR~~l  243 (712)
                       |++-+.|
T Consensus       262 a~~~~~~l  269 (405)
T COG1252         262 ASPLLKDL  269 (405)
T ss_pred             CChhhhhc
Confidence             5565554

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.90  E-value=0.36  Score=53.55  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~----Gi~v~lvEr~~~~   78 (712)
                      +.++=|||+|+++|++|.+|-|-    |-+++|+|+.+.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            35678999999999999999887    5699999998743

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.87  E-value=0.064  Score=58.87  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-..+...|.+.+.+ |+                   +++++++|++++.+++++.++..   +|.    +++||.||
T Consensus       131 ~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~vV  183 (381)
T TIGR03197       131 WLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVVV  183 (381)
T ss_pred             ccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEEE
Confidence            34445566666666666 65                   99999999999988777655432   442    58999999


Q ss_pred             eccCCCch
Q 005134          231 GTDGAGST  238 (712)
Q Consensus       231 gADG~~S~  238 (712)
                      -|.|++|.
T Consensus       184 ~a~G~~~~  191 (381)
T TIGR03197       184 LANGAQAG  191 (381)
T ss_pred             EcCCcccc
Confidence            99999974

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=95.85  E-value=0.008  Score=68.99  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++|+||||+|.+|.++|..|+..|++|+|+|+...
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            4569999999999999999999999999999999864

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=95.83  E-value=0.0072  Score=65.66  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~   78 (712)
                      ...+|+|||||++||++|..|-.+| .+++|+|.....
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            3458999999999999999999665 589999988754

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.78  E-value=0.077  Score=57.59  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      .+|+|||+|++|+-+|..|.+.|.+ |+|++++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99998754

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.73  E-value=0.0079  Score=64.67  Aligned_cols=36  Identities=25%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..++|++|||+|.-||++|..|+|.|.+|+++||+.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh   47 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH   47 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence            456999999999999999999999999999999993

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.31  E-value=0.06  Score=58.45  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...+||+|||||=+|.-+|.+-+|.|-+.+++-.+-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD   62 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence            4579999999999999999999999999999877643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.23  E-value=0.17  Score=57.10  Aligned_cols=34  Identities=15%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3589999999999999999999998 899998764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.22  E-value=0.17  Score=56.98  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.12  E-value=0.13  Score=59.42  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            35899999999999999999999999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12831 putative oxidoreductase; Provisional

Probab=94.99  E-value=0.18  Score=56.81  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999765

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=94.98  E-value=1.3  Score=48.81  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             cceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       188 ~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +.+|+++++|++|+.+++++++++.  .+|+    ++.||.||.|--...
T Consensus       211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH  254 (419)
T ss_pred             CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence            4589999999999999888776654  2342    578999999866554

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.85  E-value=0.027  Score=66.45  Aligned_cols=35  Identities=34%  Similarity=0.544  Sum_probs=33.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..|.|||.||+||++|-.|-|.|+.|+|+||....
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            68999999999999999999999999999998764

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.25  E-value=0.054  Score=55.56  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G-------i~v~lvEr~~~~   78 (712)
                      ..+|+|||+|..||++|+.|.+.+       ++|.|++-+..+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            478999999999999999998854       578898877655

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.08  E-value=0.053  Score=61.12  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|+|||.|++|+++|..|.++|++|.++|++..+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988754

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.07  E-value=0.062  Score=57.28  Aligned_cols=36  Identities=19%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +..++|+|||+|-.|.++|..|++.|.+|+++.|..
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            445689999999999999999999999999998863

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.06  E-value=0.057  Score=51.34  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|+|||..|.++|..|+++|.+|.|+.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=94.05  E-value=0.013  Score=56.68  Aligned_cols=36  Identities=33%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +.||+|||||-+||++|+.++++  .++|.|||..-.|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            46999999999999999999966  6899999987655

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.05  E-value=0.057  Score=54.60  Aligned_cols=35  Identities=23%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++++|||+|..|.++|-.|.+.|.+|+++|+.+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~   35 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER   35 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence            46999999999999999999999999999998764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=93.99  E-value=0.37  Score=57.95  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      -+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            5899999999999999999999997 99999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.83  E-value=0.4  Score=56.54  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3589999999999999999999997 599998765

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.72  E-value=0.55  Score=51.09  Aligned_cols=29  Identities=21%  Similarity=0.513  Sum_probs=23.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC----C--CCEEEE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL----G--IKCSVL   72 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~----G--i~v~lv   72 (712)
                      .+|+|||||++|+-+|..|+++    |  .+|+|+
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            4899999999999999999853    4  255555

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.68  E-value=0.62  Score=52.69  Aligned_cols=37  Identities=16%  Similarity=0.129  Sum_probs=29.3

Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI  400 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~  400 (712)
                      ..||.+||+++.  |   .-...|+.++...|+.+...++|.
T Consensus       431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g~  467 (471)
T PRK12810        431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMGS  467 (471)
T ss_pred             CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999972  1   235779999999999998888764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.61  E-value=0.05  Score=53.25  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||.|-+||.+|..|++.|++|+-+|.++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            468999999999999999999999999999765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.51  E-value=0.075  Score=60.30  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|||+|++|+.+|..|+++|.+|+++|+++
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999875

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=93.50  E-value=4.3  Score=43.18  Aligned_cols=62  Identities=26%  Similarity=0.313  Sum_probs=48.6

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-..|...|.+.+.+.|+                   +++++++|++++.++++++. +. .++|     +++||.||
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~-v~-~~~g-----~~~a~~vV  186 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTA-IV-TPSG-----DVQADQVV  186 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEE-EE-cCCC-----EEECCEEE
Confidence            45567788888898888887                   99999999999987776532 22 1233     58999999


Q ss_pred             eccCCCch
Q 005134          231 GTDGAGST  238 (712)
Q Consensus       231 gADG~~S~  238 (712)
                      .|.|++|.
T Consensus       187 ~a~G~~~~  194 (337)
T TIGR02352       187 LAAGAWAG  194 (337)
T ss_pred             EcCChhhh
Confidence            99999975

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.39  E-value=0.075  Score=51.77  Aligned_cols=32  Identities=22%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||||..|...|..++++|++|+++|+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            48999999999999999999999999999865

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=93.36  E-value=0.2  Score=57.58  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=42.7

Q ss_pred             ceeeeccCcCcCcccccccccCCCCc------cCC-CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           11 NCFSRIKTFPYPYGYTQCRALSDSKT------IVS-NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        11 ~~~~~~~~~~~p~~~~~~~~~s~~~~------~~~-~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+.+-|.+|-.|.+............      +.. ...+-..+|||||.-||-+|..|...|.++.|++=.+
T Consensus       106 ilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~  178 (793)
T COG1251         106 IIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP  178 (793)
T ss_pred             EEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence            34555667777765544333222221      110 1123457999999999999999999999999987443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=92.88  E-value=0.43  Score=52.35  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...|++||+|-.|+-.|..|.-.+.+|++|++.+.+
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~  248 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL  248 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence            456999999999999999999999999999988754

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=92.86  E-value=0.12  Score=58.69  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      ..++|.||||||-+|..+|..|++. .++|+|+|+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4679999999999999999999987 7899999998766

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.63  E-value=0.15  Score=47.91  Aligned_cols=31  Identities=26%  Similarity=0.599  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      |+|+|+|-.|+..|..|++.|.+|.++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.54  E-value=0.15  Score=57.42  Aligned_cols=36  Identities=39%  Similarity=0.542  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +..-+|+|+|+|.+|+.+|..|+++|.+|+++|+..
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345679999999999999999999999999999875

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=92.36  E-value=0.57  Score=51.06  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      ..+..+|..++++.|+                   +|+++++|.++  ++++..+.+.   ++.   .+++||.||-|-|
T Consensus        86 ~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlAtG  138 (376)
T TIGR03862        86 APLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLALG  138 (376)
T ss_pred             HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEcCC
Confidence            4577888889999887                   99999999999  2334444432   221   3589999999999


Q ss_pred             CCc
Q 005134          235 AGS  237 (712)
Q Consensus       235 ~~S  237 (712)
                      ..|
T Consensus       139 G~s  141 (376)
T TIGR03862       139 GAS  141 (376)
T ss_pred             Ccc
Confidence            877

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.32  E-value=0.16  Score=53.96  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3579999999999999999999999999999864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.12  E-value=0.15  Score=54.17  Aligned_cols=33  Identities=27%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|.|||+|..|..+|..|+++|++|+++++.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.01  E-value=0.18  Score=56.94  Aligned_cols=99  Identities=21%  Similarity=0.330  Sum_probs=72.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+.                    
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------  215 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------FLD--------------------  215 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------cCC--------------------
Confidence            35899999999999999999999999999998764310                   000                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   +++.++++++++.
T Consensus       216 --------------------------------~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~  244 (461)
T PRK05249        216 --------------------------------DEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG  244 (461)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence                                            0112234455556666                   9999999999987


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++++++++.   +|+    ++.+|.||.|.|.+..
T Consensus       245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGN  273 (461)
T ss_pred             eCCeEEEEEC---CCC----EEEeCEEEEeecCCcc
Confidence            7777665542   342    6899999999997654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=91.84  E-value=0.2  Score=55.57  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      ..++||||+|-|..-..+|.+|++.|.+|+.+||++...
T Consensus         2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence            467999999999999999999999999999999998653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.53  E-value=0.21  Score=52.82  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      ++|+|+|+|..|.++|..|++.|.+|+++.|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            3699999999999999999999999999987

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.38  E-value=0.22  Score=52.38  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3799999999999999999999999999998864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.37  E-value=0.21  Score=52.86  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+|||+|-.|.++|..|++.|.+|+++.|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            59999999999999999999999999999854

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.02  E-value=0.32  Score=48.45  Aligned_cols=33  Identities=36%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .-+|+|||||.+|+.-+..|.+.|.+|+|+...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            358999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.94  E-value=0.26  Score=51.80  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999997753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=90.86  E-value=0.31  Score=46.24  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE   73 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvE   73 (712)
                      ...-+|+|||||.+|+.-+..|.+.|.+|+||.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            345689999999999999999999999999994

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=90.82  E-value=0.77  Score=47.76  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCCCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKAFSTHP   82 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~~~~~~~   82 (712)
                      ..+++|||||||-+|+++|.-+.+. |- +|-|+|-....--.|
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP   80 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP   80 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc
Confidence            4679999999999999999999876 43 788888665443333

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=90.82  E-value=0.35  Score=44.72  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      ++|+|||+++.+++..++..|++|+|+|-+++.-
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~   34 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF   34 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc
Confidence            5899999999999999999999999999887643

>PRK06116 glutathione reductase; Validated

Probab=90.80  E-value=0.31  Score=54.78  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+++++.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            358999999999999999999999999999988754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.75  E-value=0.28  Score=51.74  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5699999999999999999999999999998753

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=90.68  E-value=0.28  Score=52.11  Aligned_cols=33  Identities=39%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      +|.|||+|.+|+++|+.|++.|+  ++.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999995  7999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=90.65  E-value=0.33  Score=45.18  Aligned_cols=34  Identities=35%  Similarity=0.664  Sum_probs=30.2

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      ++|.|||+ |.+|.++|+.|...++  ++.|+|+...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            47999999 9999999999999987  6889998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.57  E-value=0.28  Score=52.73  Aligned_cols=34  Identities=26%  Similarity=0.542  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|.|||.|-+||++|..|++.|++|+-+|..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4789999999999999999999999999998764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.56  E-value=0.28  Score=43.63  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      |+|||.|..|..++..|.+.+++++++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.42  E-value=0.28  Score=51.55  Aligned_cols=33  Identities=18%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=90.28  E-value=0.33  Score=46.63  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....|+|+|+|.+|+.+|..|...|++++++|.++
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            34789999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.27  E-value=1.9  Score=50.89  Aligned_cols=34  Identities=12%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      .+|+|||||.+|+-+|..+.++|. +|+++.+++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            579999999999999999999997 6888887643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.08  E-value=0.3  Score=51.44  Aligned_cols=34  Identities=15%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3599999999999999999999999999998753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.03  E-value=0.32  Score=53.54  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-.|+|+|+|+.|+.+|..|+..|.+|+++|+.+.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.98  E-value=0.4  Score=50.86  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ++|.|||+|.+|+..|..|+.+|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            579999999999999999999887 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.95  E-value=0.33  Score=53.01  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|+|+|.+|+.+|..|.+.|.+|+++++++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=89.91  E-value=0.29  Score=55.27  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|+|+|++||.++..++..|.+|+++|+++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999998753

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.84  E-value=0.46  Score=50.66  Aligned_cols=38  Identities=29%  Similarity=0.472  Sum_probs=33.0

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      +....+|.|||+|-+|.++|+.|...|+  ++.|+|.+..
T Consensus         3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            3445799999999999999999999998  7999998643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.79  E-value=0.37  Score=50.51  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999998764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=89.79  E-value=1.3  Score=48.59  Aligned_cols=40  Identities=20%  Similarity=0.430  Sum_probs=31.8

Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +++++++++.++.....  +.+.   +|    +++..+++|-|-|. |+.
T Consensus       143 e~~~~t~v~~~D~~~K~--l~~~---~G----e~~kys~LilATGs-~~~  182 (478)
T KOG1336|consen  143 ELILGTSVVKADLASKT--LVLG---NG----ETLKYSKLIIATGS-SAK  182 (478)
T ss_pred             eEEEcceeEEeeccccE--EEeC---CC----ceeecceEEEeecC-ccc
Confidence            99999999999887765  3343   55    38999999999998 443

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=89.76  E-value=2  Score=49.15  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++-..|...|.+.+.+.|+                   +++++++|++++.+++.+. +++.+..+|+  ..+|+|++|
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~--~~~i~a~~V  182 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTGE--EERIEAQVV  182 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCEE
Confidence            45667788888888888887                   9999999999998777654 4554333342  357999999


Q ss_pred             EeccCCCch-hhcccCCC
Q 005134          230 IGTDGAGST-VRKLVGID  246 (712)
Q Consensus       230 VgADG~~S~-VR~~lgi~  246 (712)
                      |-|-|++|. |.+.+|+.
T Consensus       183 VnAaG~wa~~l~~~~g~~  200 (516)
T TIGR03377       183 INAAGIWAGRIAEYAGLD  200 (516)
T ss_pred             EECCCcchHHHHHhcCCC
Confidence            999999975 55555653

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.76  E-value=2.6  Score=47.69  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      .-+|+|||+|.+|+-+|..+.+.|. +|+|++|++.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            3589999999999999999999996 6999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.74  E-value=0.45  Score=49.25  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .....|+|||+|-+|..+|..|++.|+ +++|+|...
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            345799999999999999999999997 899999665

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.68  E-value=0.33  Score=53.84  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||.|-.|+.+|..|+++|++|+.+|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5699999999999999999999999999998764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=89.64  E-value=0.48  Score=46.94  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            345789999999999999999999999 599999873

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=0.34  Score=50.62  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++|.+|||||-+||++|-..+..|-+|.++|--.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~   52 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK   52 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence            46999999999999999999999999999999643

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.47  E-value=0.42  Score=51.55  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++|.|||+|-.|...|..|+++|++|++++|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            46999999999999999999999999999974

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=89.39  E-value=0.48  Score=47.02  Aligned_cols=34  Identities=32%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      .....|+|||||-+|...|..|.+.|.+++|+++
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            3456899999999999999999999999999975

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.30  E-value=0.24  Score=43.34  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....+|||||||.+|..-+..|.+.|-+++|+.+..
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            345789999999999999999999999999998664

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.22  E-value=0.42  Score=44.00  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999999 699999775

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=89.14  E-value=3  Score=51.26  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||||.+|+=+|..+.++|.+|+++.+++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            579999999999999999999999999998874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.07  E-value=0.52  Score=50.26  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..|.|||+|..|...|..++++|++|+++|+.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.87  E-value=0.58  Score=44.95  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             CcccCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGp-aGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....+|+|||+|- +|..+|..|.++|.+++++.|.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            4568999999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02712 arogenate dehydrogenase

Probab=88.80  E-value=0.64  Score=54.67  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .+.+|.|||.|..|-++|..|.++|++|+++++.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   84 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS   84 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467999999999999999999999999999875

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=88.66  E-value=0.67  Score=49.70  Aligned_cols=48  Identities=15%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC--CchhhcccC
Q 005134          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVG  244 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~--~S~VR~~lg  244 (712)
                      +|+-+..|.++......+.+.+.   +|.    +++.|+||.|-|-  ||-+.+.-|
T Consensus       409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sg  458 (659)
T KOG1346|consen  409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASG  458 (659)
T ss_pred             eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhccccc
Confidence            77777777777766666656554   563    7899999999994  454444433

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=88.60  E-value=3.8  Score=50.30  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~~   77 (712)
                      .-+|+|||||.+|+-+|..+.+. |. +|+|++|+..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~  702 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  702 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            35899999999999999998886 86 7999998763

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=88.60  E-value=2.3  Score=46.19  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             ceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       189 ~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      ++++.++.|..++..  .  +++... +|+  ..+|.+-++|.|-|..
T Consensus       288 I~~~~~t~Vk~V~~~--~--I~~~~~-~g~--~~~iPYG~lVWatG~~  328 (491)
T KOG2495|consen  288 IDLDTGTMVKKVTEK--T--IHAKTK-DGE--IEEIPYGLLVWATGNG  328 (491)
T ss_pred             ceeecccEEEeecCc--E--EEEEcC-CCc--eeeecceEEEecCCCC
Confidence            489999999888653  2  333322 454  3689999999999976

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.38  E-value=0.61  Score=52.33  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|+|+|.+|+++|.+|+++|.+|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35799999999999999999999999999997664

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.32  E-value=0.53  Score=50.43  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-.|.++|..|++.|.+|.++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.25  E-value=0.79  Score=42.26  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      ...+|+|||+|-+|-+.+..|..+|++ ++|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            457899999999999999999999998 88888763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.17  E-value=0.53  Score=51.02  Aligned_cols=32  Identities=38%  Similarity=0.674  Sum_probs=27.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .|+|+|+||.||.++..++..|. +++++|+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            69999999999999999999997 555567665

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.10  E-value=0.64  Score=50.02  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .....|+|||+|-.|..+|..|++.|+ +++|+|+..
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            445789999999999999999999999 889999876

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=87.87  E-value=0.77  Score=49.07  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      .+|.|||+|-+|.++|..|+..|+ +++|+|..+..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            689999999999999999999997 99999987754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.71  E-value=0.8  Score=45.45  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            456899999999999999999999999 899998764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=87.66  E-value=0.48  Score=46.56  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...+|+|||+|.++.-+|..|++.|-+|+++=|++
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            34789999999999999999999999999998876

...

>PRK04148 hypothetical protein; Provisional

Probab=87.59  E-value=0.44  Score=43.70  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 999999999999999999997764

>PRK06223 malate dehydrogenase; Reviewed

Probab=87.56  E-value=0.68  Score=49.17  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      .+|.|||+|.+|.++|..|+..|+ ++.++|...+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            589999999999999999999876 9999998554

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.50  E-value=0.68  Score=48.69  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ...++|.++||||-.|+++|...+.+|.++.|+|..
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            345799999999999999999999999999999976

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=87.49  E-value=0.53  Score=52.26  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|.|||.|-.|+.+|..|++.|++|+++++++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.33  E-value=0.78  Score=48.75  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++|.|||+|-.|.++|..|++.|++|.++.|...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            346799999999999999999999999999999764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.29  E-value=0.74  Score=51.64  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+|+|.+|+++|..|++.|.+|++.|+...
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            4689999999999999999999999999997653

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=87.18  E-value=0.79  Score=48.75  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +.+|.|||+|-+|.++|+.|...|+  +++|||.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999987  688999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.82  E-value=0.84  Score=49.14  Aligned_cols=36  Identities=28%  Similarity=0.538  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            456899999999999999999999999 899999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.67  E-value=0.9  Score=46.39  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ....+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            445899999999999999999999999 677778664

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.66  E-value=0.81  Score=48.66  Aligned_cols=34  Identities=21%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|..+|..|++.|++|+++++++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999997653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.61  E-value=0.63  Score=48.72  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||.|..|.++|..|.++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=86.57  E-value=0.73  Score=50.59  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-.|+|+|.|++|..+|..|+..|.+|+++|+.+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            45899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.56  E-value=14  Score=42.90  Aligned_cols=64  Identities=17%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC-eEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~-~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ..+...|.+.+.+.|+                   +++.++.++.+..+++ .|. |.+....+|+  .+.|.|+-||-|
T Consensus       126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~--~~~i~AkaVVLA  184 (570)
T PRK05675        126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETGE--TVYIKSKATVLA  184 (570)
T ss_pred             HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCCc--EEEEecCeEEEC
Confidence            4577788888877776                   9999999999987543 332 2222223453  568999999999


Q ss_pred             cCCCchh
Q 005134          233 DGAGSTV  239 (712)
Q Consensus       233 DG~~S~V  239 (712)
                      .|..+.+
T Consensus       185 TGG~~~~  191 (570)
T PRK05675        185 TGGAGRI  191 (570)
T ss_pred             CCCcccc
Confidence            9988754

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.52  E-value=0.72  Score=52.42  Aligned_cols=32  Identities=34%  Similarity=0.622  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..|+|+|.|++|++++.+|.++|.+|++.|++
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999965

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=86.41  E-value=0.85  Score=46.74  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....++|+|||+.+..+|..++..|++|+|+|-++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            447899999999999999999999999999998766

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.22  E-value=0.75  Score=51.67  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|+|||+|..|..+|..|.++|++++++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999764

>PLN02602 lactate dehydrogenase

Probab=86.12  E-value=1.1  Score=48.27  Aligned_cols=33  Identities=21%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      .+|.|||+|-+|.++|+.|...|+  ++.|||.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            799999999999999999999987  689999865

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.11  E-value=0.76  Score=49.04  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|..|..+|..|++.|++|.+++|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=86.06  E-value=0.77  Score=51.72  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~   77 (712)
                      ++|.|||.|-+|+.+|..|+++  |++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            4699999999999999999998  478999998764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=86.01  E-value=0.75  Score=51.94  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999999999999999999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=85.87  E-value=1.2  Score=43.14  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      +|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999995 99999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=85.84  E-value=0.78  Score=50.40  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|.|||.|-+|+.+|..|+. |++|+++|+.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            58999999999999999986 9999999998653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.66  E-value=0.85  Score=48.93  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|..|...|..|++.|++|++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=85.62  E-value=3.9  Score=45.17  Aligned_cols=65  Identities=14%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-.+|.+.|.+.+++.|+                   ++..+++|++++.++++++....  +++.  +.+++||.+|
T Consensus       259 Sv~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vV  315 (419)
T TIGR03378       259 SLLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFV  315 (419)
T ss_pred             CCcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEE
Confidence            45567888889999999997                   89999999999988887765432  1221  2478999999


Q ss_pred             eccCCC-ch
Q 005134          231 GTDGAG-ST  238 (712)
Q Consensus       231 gADG~~-S~  238 (712)
                      -|.|++ |.
T Consensus       316 LAaGaw~S~  324 (419)
T TIGR03378       316 LASGSFFSN  324 (419)
T ss_pred             EccCCCcCH
Confidence            999999 75

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=85.47  E-value=1.1  Score=45.88  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.+.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            345799999999999999999999999 788888764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=85.45  E-value=1.3  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      ....+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4468999999999999999999999995 88998764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=85.30  E-value=0.53  Score=42.93  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..+++|-|||+|-+|-++|..|.+.|+.|.-+..+
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            45689999999999999999999999998777644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.28  E-value=0.9  Score=47.94  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3599999999999999999999999999998764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.23  E-value=0.79  Score=53.05  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +-+|+|||+|..|-.+|..|.++|++++++|++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999999864

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=85.18  E-value=1  Score=47.85  Aligned_cols=33  Identities=33%  Similarity=0.567  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      +|.|||+|-+|.++|..|+..|+  ++.|+++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            68999999999999999999995  7999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.13  E-value=0.93  Score=47.88  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|+|.|.+|..++..|++.|.+|++++|++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999999999999999999999999885

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.94  E-value=1  Score=50.79  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|+|+|.|.+|+++|.+|.+.|++|.+.|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4799999999999999999999999999998763

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=84.86  E-value=1  Score=49.77  Aligned_cols=35  Identities=29%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-.|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            45799999999999999999999999999998764

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=84.64  E-value=1.5  Score=40.78  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      +|+|||+|-.|...|..|.+.|+ +++|+|...-
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            58999999999999999999999 6999987753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.59  E-value=1.3  Score=44.75  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            446799999999999999999999999 777888664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=84.50  E-value=6.8  Score=48.62  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~   75 (712)
                      .-+|+|||||.+|+=+|..+.+.|.+ |+++.|+
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            35899999999999999999999985 6666654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=84.13  E-value=1.5  Score=44.52  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+..|+|||.|-+|..+|..|++.|+ +.+|+|...
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45789999999999999999999999 888888665

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08328 hypothetical protein; Provisional

Probab=84.09  E-value=1.5  Score=44.54  Aligned_cols=36  Identities=19%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            345789999999999999999999999 677887654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=84.07  E-value=1.1  Score=47.59  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=29.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      .+|.|||+|..|.++|..|.+.|+  +|.++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            579999999999999999999995  788898764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=83.88  E-value=1.3  Score=44.63  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVG-aGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.||| +|..|.++|..|++.|.+|+++.|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            599997 79999999999999999999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=83.81  E-value=1.2  Score=47.24  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        46 VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      |.|||+|-+|..+|..|+.+|+ +++++|..+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999987 999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05866 short chain dehydrogenase; Provisional

Probab=83.79  E-value=2  Score=45.16  Aligned_cols=36  Identities=14%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +....|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34456999997 8999999999999999999998763

>PTZ00117 malate dehydrogenase; Provisional

Probab=83.57  E-value=1.5  Score=46.94  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      .+.+|.|||||-+|.++|+.|+..| .++.|+|.+..
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            3468999999999999999999999 48899998764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=83.49  E-value=1.6  Score=44.13  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~---v~lvEr~~   76 (712)
                      ...+|+|+|||-+|...|..|.+.|++   +.|++|+.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            456899999999999999999999996   99999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=83.47  E-value=1.4  Score=46.24  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+|+|+|+|-+|.+.|..|++.|+ +++|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999999 799999874

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=83.41  E-value=1.5  Score=46.57  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      +|.|||+|-+|.++|+.|...|+  +.+|||.+..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999999999988  6999997643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=83.32  E-value=1.2  Score=50.66  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=83.27  E-value=1.7  Score=43.00  Aligned_cols=34  Identities=32%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3467999999999999999999999999999866

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=83.22  E-value=1.7  Score=42.71  Aligned_cols=34  Identities=24%  Similarity=0.549  Sum_probs=30.4

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ...+|+|+|| |.+|..+|..|+++|.+++++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3468999997 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=83.11  E-value=1.3  Score=50.29  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+|+++++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=82.99  E-value=1.2  Score=49.30  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=33.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+|+|-|-+|+++|.+|.++|.+|+++|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999999999999999988866

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=82.71  E-value=1.6  Score=47.60  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      .+|||+|+|-+|.+.|..|+++| .+|+|.+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            57999999999999999999999 89999999853

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=82.71  E-value=1.7  Score=42.91  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      ..+.+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            3458999999999999999999999994 88898764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK13984 putative oxidoreductase; Provisional

Probab=82.51  E-value=13  Score=43.62  Aligned_cols=35  Identities=26%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcC
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD  399 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g  399 (712)
                      .+||.+||+++.      ..+-.|+.++...|..|...|.+
T Consensus       569 ~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~~  603 (604)
T PRK13984        569 PWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLRK  603 (604)
T ss_pred             CCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhcc
Confidence            689999999863      23677999999999988877654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=82.41  E-value=1.4  Score=46.82  Aligned_cols=33  Identities=33%  Similarity=0.645  Sum_probs=28.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|+|+|-.|...|..|++.|.+|+++=|.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            479999999999999999999997777766554

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=82.40  E-value=1.9  Score=42.66  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+..|+|||+|..|...|..|++.|+ +++|+|...
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            446899999999999999999999999 588888664

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.11  E-value=1.5  Score=51.16  Aligned_cols=34  Identities=35%  Similarity=0.506  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.+|+|+|.|..|-.+|..|.++|++++++|+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~  433 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI  433 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence            4689999999999999999999999999999876

>PRK08223 hypothetical protein; Validated

Probab=82.06  E-value=2  Score=44.91  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+..|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            446899999999999999999999999 677788664

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=81.99  E-value=1.2  Score=50.53  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4599999999999999999999999999998865

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.96  E-value=1.5  Score=49.54  Aligned_cols=34  Identities=18%  Similarity=-0.069  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|+|+|.|-+|.++|.+|.++|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            4799999999999999999999999999997654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=81.95  E-value=2  Score=45.77  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=36.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH   81 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~   81 (712)
                      ..+||+|+|-|+.=..++.+|++.|-+|+.|||++.....
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST   44 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence            3699999999999999999999999999999999876433

>PLN02494 adenosylhomocysteinase

Probab=81.57  E-value=1.7  Score=48.34  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-.|+|+|.|+.|..+|..|...|.+|+++|+.+.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            36799999999999999999999999999998764

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.42  E-value=1.6  Score=48.59  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|+|||-|-+|+++|.+|.++|.+|.++|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999997653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.39  E-value=1.8  Score=49.30  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|+|.|-+|+++|.+|.++|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999765

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.20  E-value=1.8  Score=48.66  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +--|+|||.|-+|+++|.+|.++|++|.+.|...
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            4569999999999999999999999999999765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.00  E-value=1.6  Score=48.95  Aligned_cols=35  Identities=37%  Similarity=0.626  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|+|..|..+|..|.++|++++++|+++.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46799999999999999999999999999998864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.82  E-value=1.8  Score=49.03  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|+|.|-+|+++|.+|.+.|.+|.+.|+..
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            469999999999999999999999999999753

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.81  E-value=1.9  Score=48.45  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|+|.|.+|.++|.+|.+ |.+|++.|.++
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            3579999999999999999995 99999999554

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=80.78  E-value=2.1  Score=46.67  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+..|+|||+|..|...|..|++.|+ +++|+|...
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            345799999999999999999999999 888888764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=80.72  E-value=1.9  Score=45.23  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|+|.|-+|.++|..|+..|.+|++++|..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.56  E-value=2.1  Score=44.94  Aligned_cols=33  Identities=27%  Similarity=0.572  Sum_probs=28.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~   75 (712)
                      -.+|||.||||.||.+-+.++-.|. +|++.|-.
T Consensus       170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~  203 (354)
T KOG0024|consen  170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV  203 (354)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence            3689999999999999999999997 78887743

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=80.51  E-value=2.1  Score=44.62  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=27.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~   75 (712)
                      -.|+|.|+|++|++++..++..|.+ ++++++.
T Consensus       122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~  154 (280)
T TIGR03366       122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPS  154 (280)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4799999999999999999999997 7777654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=80.29  E-value=2.5  Score=46.18  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=33.5

Q ss_pred             CCCcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           39 SNEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        39 ~~~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +...+++|+|.|| |.+|..++..|.++|++|+.+.|..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            3345678999999 9999999999999999999999864

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=80.28  E-value=23  Score=38.81  Aligned_cols=48  Identities=15%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .-.+..+++.++.+...|.+.....+ +...+..|.+||||.|-|+...
T Consensus       124 ~~y~eAec~~iDp~~k~V~~~s~t~~-~~~~e~~i~YDyLViA~GA~~~  171 (491)
T KOG2495|consen  124 VKYLEAECTKIDPDNKKVHCRSLTAD-SSDKEFVIGYDYLVIAVGAEPN  171 (491)
T ss_pred             ceEEecccEeecccccEEEEeeeccC-CCcceeeecccEEEEeccCCCC
Confidence            34566778888888877766655433 3235678999999999999875

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=80.03  E-value=1.9  Score=40.83  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|+|+|-|.+|-.+|..|+..|.+|+|+|..|
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            469999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=80.01  E-value=2.4  Score=42.64  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=31.9

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +....|||.|| |..|..++..|.++|.+|+++.|++.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            33457999997 89999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	712
3ihg_A	535	Crystal Structure Of A Ternary Complex Of Aklavinon		1e-29
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		8e-28
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		2e-27
2qa2_A	499	Crystal Structure Of Cabe, An Aromatic Hydroxylase		1e-18
2qa1_A	500	Crystal Structure Of Pgae, An Aromatic Hydroxylase		2e-15
1pn0_A	665	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		3e-15
1foh_A	664	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		4e-14
3fmw_A	570	The Crystal Structure Of Mtmoiv, A Baeyer-Villiger		3e-13
2dkh_A	639	Crystal Structure Of 3-Hydroxybenzoate Hydroxylase		3e-12
4hb9_A	412	Crystal Structure Of A Putative Fad Containing Mono		6e-05

>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11 Hydroxylase With Fad And Aklavinone Length = 535

Iteration: 1
 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 181/404 (44%), Gaps = 42/404 (10%)
Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R   + R + 
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLR-IG 60
Query: 100 GLAEEIERSQPPVDLWRKFI--YCTSVTGPILGSVDHMQPQDFEKVV------SPVSVAH 151
           G+A+E+ R+         F+     SV G IL +V     + F+ +V      +P   A 
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVS----ESFDDMVAATEPCTPAGWAM 116
Query: 152 FSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
            SQ                 I  ++  +        G  I  G   +S    D       
Sbjct: 117 LSQ------------DKLEPILLAQARK-------HGGAIRFGTRLLSFRQHDDDAGAGV 157
Query: 212 SFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271
           +    G   E +++   L+G DG  S VR+ +GI   G   L  +V V F   DL   + 
Sbjct: 158 TARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIF-DADLSGIM- 215
Query: 272 NERPGML--FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKL 328
              PG    +++ + E  G     D  +    L V + P + +  EDF+P+ C +LI   
Sbjct: 216 --EPGTTGWYYLHHPEFKGTFGPTDRPD-RHTLFVEYDPDEGERPEDFTPQRCVELIGLA 272
Query: 329 VGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHN 388
           +       +++DI+ W M A +AE++     ++ LAGDA    PP GG   N  V D  +
Sbjct: 273 LDAPEVKPELVDIQGWEMAARIAERWR--EGRVFLAGDAAKVTPPTGGMSGNAAVADGFD 330
Query: 389 LAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           LAWK+A+VL+  A A +L+TYE ERK  AE   A ++  +   M
Sbjct: 331 LAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRM 374

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 153/638 (23%), Positives = 233/638 (36%), Gaps = 139/638 (21%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXX 165
             +  P D      + T V G              E    P+  A               
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGG-------------HEVYRIPLGTA-------DTRATPEH 127
Query: 166 XXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
                 IC       L    + G  +       S    D  +    + L+ G    R + 
Sbjct: 128 TPEPDAICPQHWLAPLLAEAV-GERLRTRSRLDSFEQRDDHVRATITDLRTGAT--RAVH 184
Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTE 285
              L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  + FF+  + 
Sbjct: 185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALFFFLMLSS 243
Query: 286 AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDVIDIKP 343
           ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V+    
Sbjct: 244 SLRFPLRALDGRGLYRLTV-------GVDDASKSTMDSFELVRRAVAFD-TEIEVLSDSE 295
Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+  A  
Sbjct: 296 WHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGP 353
Query: 404 SILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLDPTIANSVHQLINRVAGSVLP 461
            +L TYE ER+P+A  +   +  N R  M  E+P  L  D      +             
Sbjct: 354 GLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGPRGERI------------- 400
Query: 462 SVLQKALLEGIFKVGRAQXXXXXXXXXXXXXXXRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
                                            R A    +   G   +   P    G  
Sbjct: 401 ---------------------------------RAAVAEKLERSGARREFDAPGIHFGHT 427
Query: 522 YLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDK 581
           Y    +  +   EV      TG  R   PSA PG+R PH  +    T   STLDL     
Sbjct: 428 YRSSIVCGEPETEVA-----TGGWR---PSARPGARAPHAWL----TPTTSTLDLFG--- 472
Query: 582 VEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYI 641
                                          +  VL   GTT+ VE   A   A    ++
Sbjct: 473 -------------------------------RGFVLLSFGTTDGVE---AVTRAFADRHV 498
Query: 642 DVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRS 679
            +E V   +       I  + +   +LVRPD H+AWR 
Sbjct: 499 PLETVTCHAPE-----IHALYERAHVLVRPDGHVAWRG 531

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 151/643 (23%), Positives = 234/643 (36%), Gaps = 149/643 (23%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V++      THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGP-----ILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXX 160
             +  P D      + T V G       LG+ D     +       +  AH+        
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPAHWLAPLLAEA 147
Query: 161 XXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                                      G  +       S    D  +    + L+ G   
Sbjct: 148 V--------------------------GERLRTRSRLDSFEQRDDHVRATITDLRTGAT- 180
Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
            R +    L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  ++FF
Sbjct: 181 -RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALVFF 238
Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDV 338
           +  + ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V
Sbjct: 239 LMLSSSLRFPLRSLDGRGLYNLVV-------GVDDASKSTMDSFELVRRAVAFD-TEIEV 290
Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
           +    W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 291 LSDSEWHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348
Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLDPTIANSVHQLINRVA 456
             A   +L TYE ER+P+A  +   +  N R  M  E+P  L  D      +        
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGPRGERI-------- 400
Query: 457 GSVLPSVLQKALLEGIFKVGRAQXXXXXXXXXXXXXXXRLAKLRHIFEEGKSLQLQFPAE 516
                                                 R A    +   G   +   P  
Sbjct: 401 --------------------------------------RAAVAEKLERSGARREFDAPGI 422
Query: 517 DLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDL 576
             G  Y    +  +   EV      TG  R   PSA PG+R PH  +    T   STLDL
Sbjct: 423 HFGHTYRSSIVCGEPETEVA-----TGGWR---PSARPGARAPHAWL----TPTTSTLDL 470
Query: 577 VSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAP 636
                                               +  VL   GTT+ VE   A   A 
Sbjct: 471 FG----------------------------------RGFVLLSFGTTDGVE---AVTRAF 493
Query: 637 WKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRS 679
              ++ +E V   +       I  + +   +LVRPD H+AWR 
Sbjct: 494 ADRHVPLETVTCHAPE-----IHALYERAHVLVRPDGHVAWRG 531

>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From Angucycline Biosynthesis, Determined To 2.7 A Resolution Length = 499

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 163/379 (43%), Gaps = 62/379 (16%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V++VGAGP GL+L+  L   G+   VLE+    +   +      R   VF +       I
Sbjct: 15  VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQ-----RGI 69
Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXX 165
             +  PV+        TS  G   G     +P DF      +  AH+             
Sbjct: 70  LPAFGPVE--------TSTQGHFGG-----RPVDF----GVLEGAHYG------------ 100
Query: 166 XXXXXXICTSEGTEGLHNH--LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
                       TE +     L +G E+L GH   ++  TD+  +V+     EG    R+
Sbjct: 101 ----VKAVPQSTTESVLEEWALGRGAELLRGHTVRAL--TDEGDHVVVEV--EGPDGPRS 152
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283
           +    ++G DG  STVRK  G D  G    +++    FL+ D+    +  RP     I  
Sbjct: 153 LTTRYVVGCDGGRSTVRKAAGFDFPGTSASREM----FLA-DIRGCEITPRP-----IGE 202
Query: 284 TEAIGVLVAHDLKEG-EFILQVPFYPPQQNLEDFSP-EICEKLIFKLVGWELSDIDVIDI 341
           T  +G++++  L +G + I+      P +      P +       +L G ++S  + +  
Sbjct: 203 TVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPV-- 260
Query: 342 KPWVMHAEVAEKFLCCY--NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             WV       + +  Y   +++LAGD+ H   PAGG GMN  VQD+ NL WK+A+V+  
Sbjct: 261 --WVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSG 318
Query: 400 IAPASILNTYETERKPIAE 418
            APA +L+TY  ER P+  
Sbjct: 319 RAPAGLLDTYHEERHPVGR 337

>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis Length = 500

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLK-EGKCTERNIQCNILIGTDGAGSTVRKLVGID 246
           G +I  GHE +S+  TD    V       EGK T   ++   L+G DG  S+VRK  G D
Sbjct: 120 GADIRRGHEVLSL--TDDGAGVTVEVRGPEGKHT---LRAAYLVGCDGGRSSVRKAAGFD 174
Query: 247 LVGEKDLQKLVSVHFLSKDLGDYLLNER-PGMLFFIFNTEAIGVLVAHDLKEG--EFILQ 303
             G     ++        +L   ++ E  PG           G+++   L  G    I+ 
Sbjct: 175 FPGTAATMEMYLADIKGVELQPRMIGETLPG-----------GMVMVGPLPGGITRIIVC 223
Query: 304 VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQI 361
               PPQ+     S         +L G +++  + +    WV     A + +  Y   ++
Sbjct: 224 ERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPV----WVSAFGNATRQVTEYRRGRV 279
Query: 362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ILAGD+ H   PAGG GMNT +QDA NL WK+ +V+   A   +L++Y +ER  + +
Sbjct: 280 ILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGK 336

>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 665

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 46/242 (19%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
           + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S + 
Sbjct: 217 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 274
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
           G  ++  R   L   +       L A   K G             +   F+PE+     K
Sbjct: 275 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 318
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
            IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT +
Sbjct: 319 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 375
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
            D +NL WK+  VL   A   IL TYE ER+P A+    F+   S + + R A +V   +
Sbjct: 376 MDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEM 435
Query: 439 GL 440
           G+
Sbjct: 436 GV 437

>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 664

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 46/242 (19%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
           + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S + 
Sbjct: 216 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 273
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
           G  ++  R   L   +       L A   K G             +   F+PE+     K
Sbjct: 274 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 317
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
            IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT +
Sbjct: 318 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 374
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
            D +NL WK+  VL   A   IL TYE ER   A+    F+   S + + R A +V   +
Sbjct: 375 MDTYNLGWKLGLVLTGRAKRDILKTYEEERHAFAQALIDFDHQFSRLFSGRPAKDVADEM 434
Query: 439 GL 440
           G+
Sbjct: 435 GV 436

>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger Monooxygenase From The Mithramycin Biosynthetic Pathway In Streptomyces Argillaceus. Length = 570

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 19/235 (8%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247
           G EI  GHE   +    + + V  +    G      ++    +G DG  STVR+L     
Sbjct: 162 GAEIPRGHEVTRLRQDAEAVEVTVA----GPSGPYPVRARYGVGCDGGRSTVRRLAADRF 217
Query: 248 VG-EKDLQKLVS-VHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
            G E  ++ L+  V    +++         G+L   F  E         L  G       
Sbjct: 218 PGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEG-------GLGPGWSSSSTG 270
Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQIIL 363
             P      D  P   E L   +     + + + +   W+     A +    Y   +++L
Sbjct: 271 HSP----AADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLL 326
Query: 364 AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           AGDA H   P GG G+NTG+QDA NL WK+A+ ++      +L+TY  ER P+AE
Sbjct: 327 AGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAE 381

>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From Comamonas Testosteroni, In Complex With The Substrate Length = 639

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI- 281
            +Q   ++G DGA S VR+ +G  LVG+   Q    +  L+       + + P + + + 
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLA-------VTDFPDVRYKVA 249
Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIF--KLVGWELSDIDVI 339
             +E   VL+    +EG  +++  FY     L D    +  + I   +L+      +   
Sbjct: 250 IQSEQGNVLIIP--REGGHLVR--FYVEMDKL-DADERVASRNITVEQLIATAQRVLHPY 304
Query: 340 DIK----PWVMHAEVAEKFLCCYNQII--------------LAGDACHRFPPAGGFGMNT 381
            ++    PW    E+ ++    Y+ ++              +AGDACH   P  G GMN 
Sbjct: 305 KLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF 364
Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
            +QD+ NL WK+A+VL+      +L+TY +ER+ +A+
Sbjct: 365 SMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQ 401

>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 225 QCNILIGTDGAGSTVRKL---------VGID-LVGEKDLQKLVSVHFLSKDLGDYLLN-- 272
             ++L+G DG+ S VRK          VG+  ++G   L   ++   L ++  D   N  
Sbjct: 154 NVDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPALTA-LLPQNFRDGTPNSI 212
Query: 273 --ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQ---NLEDFSPE-ICEKLI 325
             + P  LF       + + V   L E   FI+ V          N+ DFS E +C+ + 
Sbjct: 213 VPKSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQ 272
Query: 326 FKLVGWE------LSDIDVIDIKPWVMHAEVAEKFLCCYNQII-LAGDACHRFPPAGGFG 378
            + + W+      +   D  +I P  +H       L   +  + L GDA H   P  G G
Sbjct: 273 SRXISWDPSLHTLVQQSDXENISP--LHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSG 330
Query: 379 MNTGVQDAHNLAWKIASV 396
            NT ++DA  L  K+ASV
Sbjct: 331 ANTALRDALLLTQKLASV 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	712
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-101
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-92
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	7e-12
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	2e-64
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	3e-64
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	5e-64
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	2e-53
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-48
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-47
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	8e-31
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	7e-21
2bry_A	497	NEDD9 interacting protein with calponin homology a	2e-20
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	4e-16
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	6e-14
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-12
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-10
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-08
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	9e-08
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	5e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	3e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	8e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	8e-04

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score =  320 bits (823), Expect = e-101
 Identities = 142/662 (21%), Positives = 220/662 (33%), Gaps = 146/662 (22%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLA 102
             VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R ++ +FR+  G+A
Sbjct: 27  TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPR-SMELFRRW-GVA 84

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDH-MQPQDFEKVVSPVSVAHFSQYKLNKLL 161
           ++I  +  P D      + T V G  +  +             +P   A   Q+ L  LL
Sbjct: 85  KQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLL 144

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
            + +                      G  +       S    D    V A+         
Sbjct: 145 AEAV----------------------GERLRTRSRLDSFEQRDDH--VRATITDLRTGAT 180

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
           R +    L+  DGA S  RK +GID       Q   ++ F + +L   L  ER  + FF+
Sbjct: 181 RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLG-ERAALFFFL 239

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
             + ++   +      G + L V            S     +L+ + V ++  +I+V+  
Sbjct: 240 MLSSSLRFPLRALDGRGLYRLTVGVDD-----ASKSTMDSFELVRRAVAFDT-EIEVLSD 293

Query: 342 KPWVMHAEVAEKFLCCYNQ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
             W +   VA+ F         + L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 294 SEWHLTHRVADSF-----SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348

Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGS 458
             A   +L TYE ER+P+A  +   +  N R  M+     GL                  
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGP------------- 395

Query: 459 VLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDL 518
                            G                  R A    +   G   +   P    
Sbjct: 396 ----------------RGERI---------------RAAVAEKLERSGARREFDAPGIHF 424

Query: 519 GFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVS 578
           G  Y    +  +                 + PSA PG+R PH  +        STLDL  
Sbjct: 425 GHTYRSSIVCGEP--------ETEVATGGWRPSARPGARAPHAWLT----PTTSTLDLFG 472

Query: 579 GDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWK 638
                F+L+     +      A  +   D  VP +                    L    
Sbjct: 473 RG---FVLLSFGTTDG---VEAVTRAFADRHVPLETVT---------CHAPEIHALYER- 516

Query: 639 NYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAV 698
                                       +LVRPD H+AWR     +     E+      V
Sbjct: 517 --------------------------AHVLVRPDGHVAWRGDHLPA-----ELGGLVDKV 545

Query: 699 LG 700
            G
Sbjct: 546 RG 547

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score =  296 bits (760), Expect = 2e-92
 Identities = 121/427 (28%), Positives = 186/427 (43%), Gaps = 32/427 (7%)

Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKL 98
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R  + + R  
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPR-TMELLRIG 60

Query: 99  DGLAEEIERSQPPVDLWRKFIY--CTSVTGPILGSVDHMQPQDFEKV--VSPVSVAHFSQ 154
            G+A+E+ R+         F+     SV G IL +V              +P   A  SQ
Sbjct: 61  -GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQ 119

Query: 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFL 214
            KL  +LL Q  K                    G  I  G   +S    D       +  
Sbjct: 120 DKLEPILLAQARKH-------------------GGAIRFGTRLLSFRQHDDDAGAGVTAR 160

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G   E +++   L+G DG  S VR+ +GI   G   L  +V V F + DL   +    
Sbjct: 161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGIM-EPG 218

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWEL 333
               +++ + E  G     D +     L V + P + +  EDF+P+ C +LI   +    
Sbjct: 219 TTGWYYLHHPEFKGTFGPTD-RPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPE 277

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
              +++DI+ W M A +AE++     ++ LAGDA    PP GG   N  V D  +LAWK+
Sbjct: 278 VKPELVDIQGWEMAARIAERWRE--GRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKL 335

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLIN 453
           A+VL+  A A +L+TYE ERK  AE   A ++  +   M    A   D ++      L  
Sbjct: 336 AAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAPHMAEVWDKSVGYPETLLGF 395

Query: 454 RVAGSVL 460
           R   S +
Sbjct: 396 RYRSSAV 402

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 43/226 (19%), Positives = 68/226 (30%), Gaps = 49/226 (21%)

Query: 475 VGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCE 534
                ++E+L   +  +                     +P   LGFRY   A++      
Sbjct: 358 AAELVVAEALAIYAQRMAPHMAEVWDKSVG--------YPETLLGFRYRSSAVLAT---- 405

Query: 535 VGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEES 594
               + P        PS  PG R PH+ V      + ST+DL       + L+   +   
Sbjct: 406 ---DDDPARVENPLTPSGRPGFRGPHVLVSRHGERL-STVDLFGDG---WTLLAGELGAD 458

Query: 595 YHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLS 654
                AA  V+ +  VP +   +    T  E        +                    
Sbjct: 459 --WVAAAEAVSAELGVPVRAYRVGAGLTDPESAVSERYGIGK------------------ 498

Query: 655 WWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLG 700
                     GA LVRPD  +AWR+    + +    +E     VL 
Sbjct: 499 ---------AGASLVRPDGIVAWRT-DEAAADAAQTLEGVLRRVLD 534

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score =  223 bits (569), Expect = 2e-64
 Identities = 117/646 (18%), Positives = 193/646 (29%), Gaps = 180/646 (27%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V++VG GPVGL+L+  L   G+   VLEK      H +A  ++ R         GL +
Sbjct: 50  TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLD 108

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF-SQYKLNKLLL 162
                                           Q  DF  V +         Q +   LL 
Sbjct: 109 RFLEGTQVAKGLPFA-------------GIFTQGLDFGLVDTRHPYTGLVPQSRTEALLA 155

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +   +                    G EI  GHE   +    +   V  +    G     
Sbjct: 156 EHAREA-------------------GAEIPRGHEVTRLRQDAEA--VEVTV--AGPSGPY 192

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            ++    +G DG  STVR+L      G +          L   +G     ER     +  
Sbjct: 193 PVRARYGVGCDGGRSTVRRLAADRFPGTEATV-----RAL---IGYVTTPEREVPRRWER 244

Query: 283 NTEAIGVLVAHDLKEGE----FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
             +  G+LV     EG     +      + P  +    + E     + ++ G   + + +
Sbjct: 245 TPD--GILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRG---TPLTL 299

Query: 339 IDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394
            +   W+      +  A+++     +++LAGDA H   P GG G+NTG+QDA NL WK+A
Sbjct: 300 TEPVSWLSRFGDASRQAKRYRS--GRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLA 357

Query: 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINR 454
           + ++      +L+TY  ER P+AE                         + N+  QL   
Sbjct: 358 ARVRGWGSEELLDTYHDERHPVAERV-----------------------LLNTRAQLALM 394

Query: 455 VAGSVLPSVLQKALLEGI-FKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQF 513
                  + L+  + E +         +  +                             
Sbjct: 395 RPDEQHTTPLRGFVEELLGTDEVNRYFTGMIT---------------------------- 426

Query: 514 PAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIIST 573
                  RY   A                 H         PG     + +   S E +  
Sbjct: 427 ---GTDVRYATFAPAAS----------ARPHPW-------PGRFAGGLVLSRPSGEPVPV 466

Query: 574 LDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAE 633
            +L+   +   LL+           RA L                               
Sbjct: 467 AELLRSAR--PLLLDLA-------GRADL----------------------------REA 489

Query: 634 LAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAWRS 679
             PW + + V   + + +              A+LVRPD ++AW  
Sbjct: 490 TRPWSDRVSVVAGEATVE----------PPAQALLVRPDGYVAWAG 525

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score =  220 bits (563), Expect = 3e-64
 Identities = 85/405 (20%), Positives = 143/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP G++L+  L   G++  VLE+    +   +      R   VF + 
Sbjct: 7   HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH-FSQYKL 157
            G+       +                           P DF  +      A    Q   
Sbjct: 67  -GILPRFGEVETSTQGHF-----------------GGLPIDFGVLEGAWQAAKTVPQSVT 108

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
              L +    L                   G +I  GHE +S++     + V       G
Sbjct: 109 ETHLEQWATGL-------------------GADIRRGHEVLSLTDDGAGVTVEV----RG 145

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              +  ++   L+G DG  S+VRK  G D  G                L D    E    
Sbjct: 146 PEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATM-----EMY---LADIKGVELQPR 197

Query: 278 LFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
           +         G+++   L  G    I+     PPQ+     S         +L G +++ 
Sbjct: 198 MIGETLPG--GMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAH 255

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +        ++     ++ILAGD+ H   PAGG GMNT +QDA NL WK+ +
Sbjct: 256 AEPVWVSAFGNATRQVTEYRR--GRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGA 313

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   A   +L++Y +ER  + +     +       +  P    L
Sbjct: 314 VVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPL 358

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score =  220 bits (562), Expect = 5e-64
 Identities = 88/405 (21%), Positives = 145/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP GL+L+  L   G+   VLE+    +   +      R   VF + 
Sbjct: 8   HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR 67

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKL 157
            G+       +                          +P DF  +      V    Q   
Sbjct: 68  -GILPAFGPVETSTQGHF-----------------GGRPVDFGVLEGAHYGVKAVPQSTT 109

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
             +L +                        G E+L GH   +++     + V      EG
Sbjct: 110 ESVLEEWALGR-------------------GAELLRGHTVRALTDEGDHVVVEV----EG 146

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               R++    ++G DG  STVRK  G D  G        S       L D    E    
Sbjct: 147 PDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTS-----ASREMF---LADIRGCEITPR 198

Query: 278 LFFIFNTEAIGVLVAHDLKEGE--FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
                    +G++++  L +G    I+     P ++       +       +L G ++S 
Sbjct: 199 PIGETV--PLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISH 256

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +   A     +     +++LAGD+ H   PAGG GMN  VQD+ NL WK+A+
Sbjct: 257 GEPVWVSAFGDPARQVSAYRR--GRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAA 314

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   APA +L+TY  ER P+       +       +       L
Sbjct: 315 VVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLSGDEMQPL 359

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score =  194 bits (495), Expect = 2e-53
 Identities = 90/423 (21%), Positives = 158/423 (37%), Gaps = 59/423 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L++       +K  +++K      + QA  +  R   
Sbjct: 4   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 64  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 117

Query: 154 QYKLNKLLLKQLEKLNFKICTSE-----------------------------GTEGLHNH 184
           Q ++ + +L  + +++      E                              +E     
Sbjct: 118 QGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP 177

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
           L  G +   G    ++   ++          +       + C  +IG DG  S VR+ +G
Sbjct: 178 LQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLG 237

Query: 245 IDLVGEK-DLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE--FI 301
            +++GE+ D    V     + +  D              ++   G ++    +     F 
Sbjct: 238 FEMIGEQTDYIWGVLDAVPASNFPD-------IRSRCAIHSAESGSIMIIPRENNLVRFY 290

Query: 302 LQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK---PWVMHAEVAEKFL 355
           +Q+        + +   F+PE+      K+        DV  +     + +   V EKF 
Sbjct: 291 VQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPY--TFDVQQLDWFTAYHIGQRVTEKF- 347

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
               ++ +AGDACH   P  G GMNT + D +NL WK+  VL   A   IL TYE ER+P
Sbjct: 348 SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQP 407

Query: 416 IAE 418
            A+
Sbjct: 408 FAQ 410

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score =  180 bits (459), Expect = 1e-48
 Identities = 118/683 (17%), Positives = 216/683 (31%), Gaps = 133/683 (19%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYAL-VFR 96
           +  + V VLIVG GP GL L+  L     I+  ++E+ +      QA  I  R  + +F 
Sbjct: 28  AVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACR-TMEMFE 86

Query: 97  KLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                A+ I +    ++    +       G I     H + QD E  +S       +Q +
Sbjct: 87  AF-EFADSILKEACWINDVTFWKPDPGQPGRI---ARHGRVQDTEDGLSEFPHVILNQAR 142

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           ++   L+++     ++      E  +   +   ++  G     V+ T      +      
Sbjct: 143 VHDHYLERMRNSPSRL------EPHYARRVLDVKVDHGAADYPVTVT------LERCDAA 190

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL--NER 274
                  +Q   ++G DGA S VR+ +G  LVG+       +  +    + D L   +  
Sbjct: 191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDS-----ANQAWG---VMDVLAVTDFP 242

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN----LEDFSPEICEKLIFKLVG 330
                    +E   VL+            V       +      + + E       +++ 
Sbjct: 243 DVRYKVAIQSEQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLH 302

Query: 331 WELSDIDVIDIKPWVM----HAEVAEKF----------LCCYNQIILAGDACHRFPPAGG 376
                ++V ++  W         +  K+               ++ +AGDACH   P  G
Sbjct: 303 PY--KLEVKNVP-WWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAG 359

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
            GMN  +QD+ NL WK+A+VL+      +L+TY +ER+ +A+       +  +       
Sbjct: 360 QGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQLIDFDREWAK------- 412

Query: 437 ALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRL 496
                         + +  A       +     +  F+      +               
Sbjct: 413 --------------MFSDPAKEGGQGGVDPKEFQKYFEQHGRFTAG-------------- 444

Query: 497 AKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGS 556
                                +G  Y    L   +  +  A     G R     SA P  
Sbjct: 445 ---------------------VGTHYAPSLLTGQAKHQALASGFTVGMR---FHSA-PVV 479

Query: 557 RLPHMNVRVLSTEIIS----TLDLVSGD--------KVEFLLIIAPVEESYHLARAALKV 604
           R+       L     +     L   +           +  L      + +  L R     
Sbjct: 480 RVCDAKPVQLGHCGKADGRWRLYAFAAQNDLAQPESGLLALCRFLEGDAASPLRRFTPAG 539

Query: 605 AEDFKVPTKVCVLWPAGTTNEVEFRSA-AELAPWKN---YIDVEEVKRSSDSLSWWRICK 660
            +   +     V        EV   +  A L P K     ID E+V       +   I +
Sbjct: 540 QDIDSIFDLRAVF--PQAYTEVALETLPALLLPPKGQLGMIDYEKVFSPDLKNAGQDIFE 597

Query: 661 M----TDMGAI-LVRPDDHIAWR 678
           +       GA+ +VRPD ++A  
Sbjct: 598 LRGIDRQQGALVVVRPDQYVAQV 620

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score =  172 bits (438), Expect = 1e-47
 Identities = 65/404 (16%), Positives = 121/404 (29%), Gaps = 52/404 (12%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ--AHFINNRYALVFRKLDGL 101
             V I+GAGP GL+L  LL K GI   +LE+        +  A  +      + R+  G+
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GV 61

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLL 161
              + R     +               +      +  D +++    +V  + Q ++ + L
Sbjct: 62  DRRMARDGLVHEGVE------------IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDL 109

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
           ++  E                        +    E        +      +F ++G    
Sbjct: 110 MEAREACG------------------ATTVYQAAEVRLHDLQGE--RPYVTFERDG--ER 147

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
             + C+ + G DG     R+ +  + +   +        +    LG              
Sbjct: 148 LRLDCDYIAGCDGFHGISRQSIPAERLKVFE------RVYPFGWLGLLADTPPVSHELIY 201

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDID 337
            N      L +               P  + +ED+S E    +L  +L   V  +L    
Sbjct: 202 ANHPRGFALCSQR--SATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGP 259

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            ++     + + V E     + ++ LAGDA H  PP G  G+N    D   L   +    
Sbjct: 260 SLEKSIAPLRSFVVEPM--QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAY 317

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
           ++     +L  Y              S          P      
Sbjct: 318 RE-GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS 360

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  124 bits (313), Expect = 8e-31
 Identities = 65/395 (16%), Positives = 131/395 (33%), Gaps = 79/395 (20%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI G G  G +L+ LL + G +  V+E+ +       A  +      V     GL  E+
Sbjct: 9   VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEV 67

Query: 106 -ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF----SQYKLNKL 160
             R                  G +L   ++          S V    +        L +L
Sbjct: 68  TRRGGRVRHELE-----VYHDGELLRYFNY----------SSVDARGYFILMPCESLRRL 112

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           +L++++                       E+L      +V   ++        L +G   
Sbjct: 113 VLEKIDGEA------------------TVEMLFETRIEAVQRDERHAIDQVR-LNDG--- 150

Query: 221 ERNIQCNILIGTDGAGSTVRK-LVGIDLVG--------------EKDLQKLVSVHFLSKD 265
            R ++  +++G DG  S VR+ L+ ID+                   + +   ++  S  
Sbjct: 151 -RVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDS-- 207

Query: 266 LGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLI 325
                  +     F+    +   ++V+   +E   ++            +      ++ +
Sbjct: 208 -------QGGLAYFYPIGFDRARLVVSFPREEARELMADT-------RGESLRRRLQRFV 253

Query: 326 FKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  ++ +      K   +     +++    + + + GDA H   P  G GMN  ++
Sbjct: 254 GDESAEAIAAVTGTSRFKGIPIGYLNLDRYWA--DNVAMLGDAIHNVHPITGQGMNLAIE 311

Query: 385 DAHNLAWKIASVLK-DIAPASILNTYETERKPIAE 418
           DA  LA  +   L+   A    L  Y+ ER P+ +
Sbjct: 312 DASALADALDLALRDACALEDALAGYQAERFPVNQ 346

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 72/413 (17%), Positives = 124/413 (30%), Gaps = 87/413 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN---NRYALVFRKLDGLA 102
           V I+G GPVGL ++ LL + GI  SV E++           ++          +K  GL 
Sbjct: 29  VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLL 87

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +       P+      +      G IL +    +    E       +   ++  L  +LL
Sbjct: 88  QTYYDLALPMG-----VNIADEKGNILST----KNVKPENRFDNPEI---NRNDLRAILL 135

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
             LE            + +              + V +    +      +F +       
Sbjct: 136 NSLEN-----------DTVIW----------DRKLVMLEPGKK--KWTLTF-ENK----P 167

Query: 223 NIQCNILIGTDGAGSTVRKLV--------------------GIDLVGEKDLQKLVSVHFL 262
           +   +++I  +G  S VRK V                     I+  G   L     +   
Sbjct: 168 SETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMAS 227

Query: 263 SKDLGDYLLNERPGML---FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
            +    +      G L         +        D +    ++        +   D+   
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDF-L---LKEFSDWDER 283

Query: 320 ICEKLIFK---LVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG 376
             E LI      VG       +   KPW                I + GDA H  PP  G
Sbjct: 284 YKE-LIHTTLSFVGLATRIFPLE--KPWKSKRP---------LPITMIGDAAHLMPPFAG 331

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
            G+N+G+ DA  L+  +A    + +    +  YE +     +     S QN  
Sbjct: 332 QGVNSGLVDALILSDNLADGKFN-SIEEAVKNYEQQMFIYGKEAQEESTQNEI 383

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 94.4 bits (234), Expect = 2e-20
 Identities = 75/445 (16%), Positives = 136/445 (30%), Gaps = 113/445 (25%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
              L+VGAGP GL  ++ L  LG +  ++EK   FS H   H                  
Sbjct: 93  TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH------------------ 134

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                     LW   I                   D   + +      F    L+ + ++
Sbjct: 135 ----------LWPFTI------------------HDLRALGAKKFYGRFCTGTLDHISIR 166

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-TDQCINVIASFLKEGKCTER 222
           QL+ L  K+            LL G EI  G +   +     +     A           
Sbjct: 167 QLQLLLLKVA-----------LLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLA 215

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD-LGDYLLNERPGM---- 277
           + + ++LI   G           ++ G+  +   ++ +F++   + +  + E  G+    
Sbjct: 216 SYEFDVLISAAGGKFVPEGFTIREMRGKLAIG--ITANFVNGRTVEETQVPEISGVARIY 273

Query: 278 --LFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP----------------------- 309
              FF    +A G+    + +   E  + +                              
Sbjct: 274 NQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANV 333

Query: 310 -QQNLEDFSPEICE--------KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
             + L+ F+    +        KL F        D+   D    +M AE + +    +  
Sbjct: 334 VPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFT-SMMRAESSARVQEKHGA 392

Query: 361 ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
              + L GD         G G+  G   A + AW +    +   P  +L     ER+ + 
Sbjct: 393 RLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVL----AERESLY 448

Query: 418 EFNTALSVQNFRAAMEVPSALGLDP 442
           +  +  S +N        +  GLDP
Sbjct: 449 QLLSQTSPENM---HRNVAQYGLDP 470

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 79.8 bits (196), Expect = 4e-16
 Identities = 54/408 (13%), Positives = 106/408 (25%), Gaps = 77/408 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +L++GAGP GLV +  L +        ++EKN           +  R            +
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
             ER  P    + +         P L S                 +    +  L   L  
Sbjct: 63  APERLNPQ---FLEDFKLVHHNEPSLMSTGV-------------LLCGVERRGLVHALRD 106

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +                       G  I      +                         
Sbjct: 107 KCRSQ-------------------GIAIRFESPLLEHGEL------------------PL 129

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP-GMLFFIF 282
              ++++  +G            LV + D  +         +   +    +    +  +F
Sbjct: 130 ADYDLVVLANGVNHKTAHFTEA-LVPQVDYGR---------NKYIWYGTSQLFDQMNLVF 179

Query: 283 NTEAIGVLVAH--DLKEGEFILQVPFYPPQQN---LEDFSPEICEKLIFKLVGWELSDID 337
            T    + +AH     +      V           L + S E   + + K+   EL    
Sbjct: 180 RTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHG 239

Query: 338 VI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           ++      W     ++    C   +++L GDA      + G G    V  A  L   + +
Sbjct: 240 LVSQPGLGWRNFMTLSHD-RCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT 298

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPT 443
              +    + L  +E    P+ +     +  +      V   + L   
Sbjct: 299 ---EDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSA 343

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 73.3 bits (180), Expect = 6e-14
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 75/375 (20%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           VL++GAGP G V + L+ K G K  ++EK + F       S  P+             + 
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEK-QKFPRFVIGESLLPRC-------MEHLDEA 59

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF-EKVVSPVSVA-HFSQYK 156
            G  + ++          KF+               +   +F ++  +  +      +  
Sbjct: 60  -GFLDAVKAQGFQQKFGAKFVRG-----------KEIADFNFSDQFSNGWNWTWQVPRGN 107

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            +K L  +  +                   QG ++        +             +++
Sbjct: 108 FDKTLADEAAR-------------------QGVDVEYEVGVTDIKFFGTDSVTT---IED 145

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276
               +R I+   +I   G G  + ++ G+D     + ++ +  H   KD+   +  E  G
Sbjct: 146 INGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHI--KDVKRPVAAEMEG 203

Query: 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYP---------PQQNLEDF---SPEICEKL 324
                   +    +       G   +     P         P++ +         I E+ 
Sbjct: 204 NRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERF 263

Query: 325 IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  E    +   I+ + + A          +  +L G+A     P    G    ++
Sbjct: 264 K----SEEFLF-EPRTIEGYAISASK-----LYGDGFVLTGNATEFLDPIFSSGATFAME 313

Query: 385 DAHNLAWKIASVLKD 399
                       LK 
Sbjct: 314 SGSKGGKLAVQFLKG 328

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 60/396 (15%), Positives = 117/396 (29%), Gaps = 84/396 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           V I+G GP G V  + L KLG   ++ E+  AF       S  P    I         +L
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYER-SAFPRYRVGESLLPGTMSI-------LNRL 77

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVT---GPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
            GL E+I+         + ++   S T   G                           + 
Sbjct: 78  -GLQEKIDA--------QNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKRE 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
           + +KLLL +                          +        V  +D    V+ +  +
Sbjct: 129 EFDKLLLDEARSRGI-------------------TVHEETPVTDVDLSDPDR-VVLTVRR 168

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HFLS-------KDL 266
            G      ++ + +I   G+G  + + +G  +    +  +  +V  +F            
Sbjct: 169 GG--ESVTVESDFVIDAGGSGGPISRKLG--VRQYDEFYRNFAVWSYFKLKDPFEGDLKG 224

Query: 267 GDYLLNERPG-MLFFIF--NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF---SPEI 320
             Y +    G +       +  ++G++V           +V                 + 
Sbjct: 225 TTYSITFEDGWVWMIPIKDDLYSVGLVVDRS-----KSAEVREQGADAFYSSTLAKCAKA 279

Query: 321 CEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
            + L           + +V  ++ W    EV        ++  L GDA     P    G+
Sbjct: 280 MDIL------GGAEQVDEVRIVQDWSYDTEV-----FSADRFFLCGDAACFTDPLFSQGV 328

Query: 380 NTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
           +   Q A + A  I  + +      ++   Y    +
Sbjct: 329 HLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYR 364

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 69/423 (16%), Positives = 120/423 (28%), Gaps = 123/423 (29%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
            +++GAG  GL  ++ L + GI C V E  K            P             + +
Sbjct: 26  AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNG----------VKCM 75

Query: 99  D--GLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
              G+ + +E    P     R+  Y    +G  +           E+  S       ++ 
Sbjct: 76  AHLGMGDIMETFGGPL----RRMAYRDFRSGENMTQFS--LAPLIERTGSRPCPVSRAE- 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
            L + +L              G + +            G              V   F  
Sbjct: 129 -LQREMLDYW-----------GRDSVQF----------GKRVTRCEEDAD--GVTVWF-T 163

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDL 266
           +G     +   ++LI  DG+ S +R      ++G    ++         LV +       
Sbjct: 164 DG----SSASGDLLIAADGSHSALRPW----VLGFTPQRRYAGYVNWNGLVEIDEALAPG 215

Query: 267 GDYLLNERPGMLFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP-------------- 309
             +              T  +G    +    +  G F        P              
Sbjct: 216 DQW--------------TTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261

Query: 310 QQNLEDFSPEICEKLI-----FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILA 364
            +    ++P + +KLI           E+ DI+       V              ++ L 
Sbjct: 262 SRYFAGWAPPV-QKLIAALDPQTTNRIEIHDIEPFS--RLV------------RGRVALL 306

Query: 365 GDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
           GDA H   P  G G    ++DA  L        +DIA A  L  YE +R          +
Sbjct: 307 GDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT-RDIAAA--LREYEAQRCDRVRDLVLKA 363

Query: 425 VQN 427
            + 
Sbjct: 364 RKR 366

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 59/400 (14%), Positives = 117/400 (29%), Gaps = 88/400 (22%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           ++++G GP G  L+  +   G +  +LE+ +AF       S  P           +   L
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLER-EAFPRHQIGESLLPAT------VHGICAML 62

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF--EKVVSPVSVAHFSQYK 156
            GL +E++R+  P+     F +         G         F               + +
Sbjct: 63  -GLTDEMKRAGFPIKRGGTFRW---------GKEPEPWTFGFTRHPDDPYGFAYQVERAR 112

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            + +LL+  E+                   +G ++   HE + V    +    +     E
Sbjct: 113 FDDMLLRNSER-------------------KGVDVRERHEVIDVLFEGERAVGVRYRNTE 153

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HF-----LSKDLGDY 269
           G   E       ++   G  + V + VG          + V++  +F     L       
Sbjct: 154 G--VELMAHARFIVDASGNRTRVSQAVG--ERVYSRFFQNVALYGYFENGKRLPAPRQGN 209

Query: 270 LLNERP----GMLFFIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDF-------S 317
           +L+            + +T   +G +V+ +  E            +   E          
Sbjct: 210 ILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAE----------AIKDGHEAALLRYIDRC 259

Query: 318 PEICEKLIFKLVGWELSDIDVIDIKPWVMHAE--VAEKFLCCYNQIILAGDACHRFPPAG 375
           P I E L            ++   K +                      GDA     P  
Sbjct: 260 PIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMAL-------VGDAACFVDPVF 312

Query: 376 GFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
             G++     A  +A  I + L  +++       +E   +
Sbjct: 313 SSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYR 352

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 6e-11
 Identities = 63/469 (13%), Positives = 125/469 (26%), Gaps = 163/469 (34%)

Query: 248 VGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
            GE     + ++S  F    + ++   +   M   I + E           E + I+   
Sbjct: 11  TGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKE-----------EIDHIIMSK 58

Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAG 365
                              +F    W L        K      E+ +KF           
Sbjct: 59  -----------DAVSGTLRLF----WTLLS------KQ----EEMVQKF----------- 82

Query: 366 DACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--DIAPASILNTYETERKPIAEFNTA- 422
                        +   ++   N  + + S +K     P+ +   Y  +R  +  +N   
Sbjct: 83  -------------VEEVLRI--NYKF-LMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQ 124

Query: 423 ----LSVQNFRAAMEVPSAL-GLDPTIANSVHQLINRVAG---SVL-PSVLQKALLE--- 470
                +V   +  +++  AL  L P     +  +     G   + +   V     ++   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQCKM 180

Query: 471 --GIF--KVGRAQLSESLLNESNPL----------GSSRLAKLRHIFEEGKS------LQ 510
              IF   +      E++L     L           S   + ++      ++        
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 511 LQFP----------------AEDLGFRYL---KGALVPDSNCEVGAPEAPTGHRRD-FVP 550
             +                 A +L  + L   +   V D             H      P
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 551 S------AN----PGSRLPH----MNVRVLST------EIISTLD---LVSGDKVE---- 583
                            LP      N R LS       + ++T D    V+ DK+     
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 584 -FLLIIAPVE--ESYHLARAALKV-AEDFKVPTKV-CVLWPAGTTNEVE 627
             L ++ P E  + +      L V      +PT +  ++W     ++V 
Sbjct: 361 SSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 8e-08
 Identities = 102/617 (16%), Positives = 176/617 (28%), Gaps = 228/617 (36%)

Query: 28  CRALSDS-KTIVSNEAVVPVLIVGAGPVG--LVLSILLTK--------LGIKCSVLEKN- 75
           C+ + D  K+I+S E +  +++      G   +   LL+K        +     VL  N 
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINY 91

Query: 76  ----KAFSTHPQA------HFINNRYAL-----VFRKLDGLAEEIERSQPPVDLWRK--- 117
                   T  +        +I  R  L     VF K +     + R QP + L R+   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKL-RQALL 145

Query: 118 --------FIY----C--TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                    I        T V   +  S       DF+     +   +       + +L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLE 200

Query: 164 QLEKLNFKICTSEGTEGLHN--------HLLQG--REILMGH---ECVSVSATD--QCIN 208
            L+KL ++I     T    +        H +Q   R +L       C+ V      Q   
Sbjct: 201 MLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAK 257

Query: 209 VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF---LSKD 265
              +F         N+ C IL+       T R     D +       +   H    L+ D
Sbjct: 258 AWNAF---------NLSCKILL-------TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 266 LGDYL----LNERPGMLFFIFNTEAIGV------LVAHDLKEG----EFILQVPF----- 306
               L    L+ RP  L      E +        ++A  +++G    +    V       
Sbjct: 302 EVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 307 ---------YPP--QQNLEDFS--PE---ICEKLIFKLVGW-ELSDIDVIDI-------- 341
                     P   ++  +  S  P    I   L+  +  W ++   DV+ +        
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYS 415

Query: 342 ------KPWV-------------------MHAEVAEKFLCCYNQIILAGDACHRFPPAG- 375
                 K                      +H       +  YN I    D+    PP   
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVDHYN-IPKTFDSDDLIPPYLD 470

Query: 376 -------GFGMNTGVQDAH---------NLAW---KI-ASVLKDIAPASILNT------Y 409
                  G  +                 +  +   KI        A  SILNT      Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 410 E---TERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQK 466
           +    +  P  E     ++ +F     +P     +  +  S +             +L+ 
Sbjct: 531 KPYICDNDPKYE-RLVNAILDF-----LPKI---EENLICSKYT-----------DLLRI 570

Query: 467 ALL---EGIFKVGRAQL 480
           AL+   E IF+    Q+
Sbjct: 571 ALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 47/266 (17%), Positives = 86/266 (32%), Gaps = 69/266 (25%)

Query: 3   IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDS-KTIVSNE--------AVVP--VLIVGA 51
           IA   R  +  +    + +         +  S   +   E        +V P    I   
Sbjct: 333 IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387

Query: 52  GPVGLVLSIL------------LTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
            P   +LS++            + KL  K S++EK    ST      I + Y  +  KL+
Sbjct: 388 -PTI-LLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTI----SIPSIYLELKVKLE 440

Query: 100 GLAE---------EIERSQPPVDL----WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSP 146
                         I ++    DL      ++ Y        +G   H++  +  +    
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS------HIG--HHLKNIEHPE---- 488

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +  F    L+   L+Q  K+     T+    G   + LQ  +    + C +    ++ 
Sbjct: 489 -RMTLFRMVFLDFRFLEQ--KIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 207 INVIASFLKEGKCTERNIQC---NIL 229
           +N I  FL   K  E  I     ++L
Sbjct: 545 VNAILDFLP--KIEENLICSKYTDLL 568

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 68/420 (16%), Positives = 119/420 (28%), Gaps = 101/420 (24%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-NKAF-------STHPQAHFINNRYALVFRK 97
           + +VG    GL  +++L   G+   V E+  +            P+              
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPEL----------VHY 57

Query: 98  LDGLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L     E++  S P         Y  ++TG  +GSV                   +    
Sbjct: 58  LLEQGVELDSISVPS----SSMEYVDALTGERVGSVPA-----------DWRFTSYDS-- 100

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHL---LQGREILMGHECVSVSATDQCINVIASF 213
                                   ++  L               V +S   +   V   F
Sbjct: 101 ------------------------IYGGLYELFGPERYHTSKCLVGLSQDSE--TVQMRF 134

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRK-LVGID-----------LVGEKDLQKLVSVHF 261
             +G       + N +IG DG  S VRK L+GI+           ++   ++   V  +F
Sbjct: 135 -SDG----TKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVLQPGEVADDVWNYF 189

Query: 262 LSK---DLGD------YLLNERPGMLFFIFNTEAI-GVLVAHDLKEGEFILQVPFYPPQQ 311
             K    L D      Y +  R        N +    V    DL E    ++    P   
Sbjct: 190 NDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSV 249

Query: 312 NLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVAEKFLCCYNQIILAGDA 367
           +    +P    +   K         D++         V+     ++    + +++L GDA
Sbjct: 250 HNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADATVDRM--VHGRVLLIGDA 307

Query: 368 CHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427
                P    G      DA  LA        D+  +  L ++ET +            + 
Sbjct: 308 AVTPRPHAAAGGAKASDDARTLAEVFTK-NHDLRGS--LQSWETRQLQQGHAYLNKVKKM 364

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 72/416 (17%), Positives = 122/416 (29%), Gaps = 112/416 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFST-------HPQAHFINNRYALVFRK 97
           +LI GAG  GL  ++ L + GI K ++LE +             P A            +
Sbjct: 7   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAA-------VEALAE 59

Query: 98  LDGLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L GL   +   + P  +L          +G  + S              P    H  +  
Sbjct: 60  L-GLGPALAATAIPTHELRYI-----DQSGATVWSEPRGVEAGNA---YPQYSIHRGE-- 108

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           L  +LL  + +                  L  + +  G     +   D    V+    ++
Sbjct: 109 LQMILLAAVRER-----------------LGQQAVRTGLGVERIEERDG--RVLIGA-RD 148

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDLG 267
           G    + +  ++L+G DG  S VR      L  ++             +           
Sbjct: 149 GHGKPQALGADVLVGADGIHSAVRAH----LHPDQRPLSHGGITMWRGVTEFDRFLDGKT 204

Query: 268 DYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE---FILQVPFYPPQQN------------ 312
             + N+        +      +   H  +      ++  VP     Q             
Sbjct: 205 MIVANDEHWSRLVAY-----PISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRL 259

Query: 313 ------LEDFSPEICEKLIFKLVG-------WELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
                   D+     +  I  L+        + + D D +    W               
Sbjct: 260 EDVLPFFADWDLGWFD--IRDLLTRNQLILQYPMVDRDPLP--HWG------------RG 303

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
           +I L GDA H   P G  G +  + D   LA  +A    D+A A  L  YE  R+P
Sbjct: 304 RITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAA--LREYEEARRP 356

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 65/413 (15%), Positives = 120/413 (29%), Gaps = 111/413 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
             + G G  GL  +I L + G    + EK+                     R   V   L
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNG----LR---VLEGL 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            G  +++ +       +  +     +    +                P  +   S   L+
Sbjct: 67  -GALDDVLQGSHTPPTYETW-----MHNKSVSKETFNGL--------PWRIMTRSH--LH 110

Query: 159 KLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
             L+ +   L                   G +I +  E V+                 G+
Sbjct: 111 DALVNRARAL-------------------GVDISVNSEAVAADPV-------------GR 138

Query: 219 CTERN---IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVS---------VHFLSKDL 266
            T +    ++ ++++G DG GS VR  +G         Q             V  + K+L
Sbjct: 139 LTLQTGEVLEADLIVGADGVGSKVRDSIGFK-------QDRWVSKDGLIRLIVPRMKKEL 191

Query: 267 GDYLLNERPGMLFFIFNTEAIG-----------VLVAHDLKEGEFILQVPFYPPQQNLED 315
           G    +    M  F    + I             L+A         + +      +    
Sbjct: 192 GHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF 251

Query: 316 FSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAG 375
             P + E    K   ++  +   +D   W               ++ L GDA H   PA 
Sbjct: 252 LEPCLIEAAKLKTARYDKYETTKLD--SWT------------RGKVALVGDAAHAMCPAL 297

Query: 376 GFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQN 427
             G    + +    A+ ++  L++ +     L  +ET  +PI +   ALS   
Sbjct: 298 AQGAGCAMVN----AFSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDY 346

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +IVG+G  G V +  L KL  K  V+EK 
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKR 33

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 6  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 35

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           LIVGAG  G VL+  L   G +  ++++
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHP 82
          +   V  ++ VG GP  + L+I L +       ++   L+K   +  H 
Sbjct: 26 ATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG 74

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 46 VLIVGAGPVGLVLS-ILLTKLGIKCSVLEK 74
          + +VG+G  GL ++  + T+L  +  VLE+
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLER 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	712
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.98
3atr_A	453	Conserved archaeal protein; saturating double bond	99.98
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.97
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.97
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.97
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.97
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.96
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.96
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.95
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.92
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.75
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.63
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.56
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.53
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.35
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.35
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.34
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.33
3dme_A	369	Conserved exported protein; structural genomics, P	99.33
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.33
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.3
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.29
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.28
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.27
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.27
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.26
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.23
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.22
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.19
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.16
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.15
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.14
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.14
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.12
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.12
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.1
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.02
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.02
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.02
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.0
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.99
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.98
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.98
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.96
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.94
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.93
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.93
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.91
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.9
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.9
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.9
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.89
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.87
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.86
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.85
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.85
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.85
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.84
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.84
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.84
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.83
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.82
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.81
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.8
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.79
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.79
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.79
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.77
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.77
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.74
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.73
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.72
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.72
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.72
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.71
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.68
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.68
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.67
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.65
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.62
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.61
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.56
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.56
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.52
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.51
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.5
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.47
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.37
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.35
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.35
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.32
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.28
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.28
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.22
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.22
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.21
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.21
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.2
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.19
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.19
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.17
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.14
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.14
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.13
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.13
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.12
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.11
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.1
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.09
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.08
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.08
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.07
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.07
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.06
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.04
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.03
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.97
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.96
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.96
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.95
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.95
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.9
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.89
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.89
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.89
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.86
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.85
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.84
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.84
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.82
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.8
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.8
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.78
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.77
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.75
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.75
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.73
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.71
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.68
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.67
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.66
4dna_A	463	Probable glutathione reductase; structural genomic	97.65
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.64
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.62
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.6
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.6
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.59
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.56
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.52
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.52
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.52
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.5
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.49
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.48
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.47
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.46
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.45
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.45
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.43
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.41
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.39
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.38
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.38
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.37
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.37
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.37
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.35
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.35
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.34
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.34
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.33
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.33
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.32
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.31
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.29
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.28
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.27
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.26
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.25
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.24
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.23
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.17
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.14
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.13
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.1
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.09
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.08
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.08
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.07
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.06
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.06
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.04
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.03
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.03
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.01
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.93
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.92
4dna_A	463	Probable glutathione reductase; structural genomic	96.92
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.92
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.91
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.9
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.9
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.88
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.86
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.84
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.81
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.8
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.79
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.78
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.77
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.75
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.68
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.65
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.64
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.63
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.62
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.55
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.49
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.46
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.46
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.45
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.42
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.39
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.21
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.08
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.82
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.81
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.71
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.51
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.43
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.29
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.2
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.83
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	94.76
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.74
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.66
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.36
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.3
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.26
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	94.25
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.15
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.08
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.99
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	93.91
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.79
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.49
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.33
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.03
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.79
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.43
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.31
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.18
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.89
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.68
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.59
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.5
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.33
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.31
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	91.26
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.17
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.06
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.88
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.86
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.81
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.8
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.8
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.75
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.71
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.67
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.6
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	90.59
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.55
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.52
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.49
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.4
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	90.31
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.3
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	90.07
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.04
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.99
3qha_A	296	Putative oxidoreductase; seattle structural genomi	89.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	89.89
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.84
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	89.81
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	89.79
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.75
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	89.71
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.68
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	89.39
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	89.31
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.31
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	89.29
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.24
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.24
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.18
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.17
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	89.16
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.15
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.1
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.02
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.99
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.98
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.96
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.95
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.92
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.87
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.86
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.86
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	88.83
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	88.72
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.66
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.66
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.45
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	88.4
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	88.26
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	88.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.9
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	87.83
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.68
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.65
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.57
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.5
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	87.46
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	87.45
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.45
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.34
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	87.26
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.22
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	86.95
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	86.86
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	86.78
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	86.67
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	86.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.61
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.42
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	86.39
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	86.27
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	86.07
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	86.06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.05
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	86.03
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	86.02
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	86.02
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	86.0
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	85.97
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	85.94
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	85.9
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	85.85
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.83
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	85.71
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.69
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.61
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	85.61
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	85.6
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.54
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	85.51
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.26
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.95
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	84.95
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.71
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	84.51
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	84.49
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	84.49
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	84.33
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	84.2
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	84.1
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.07
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	84.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	83.98
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	83.98
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	83.93
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	83.89
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	83.82
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.8
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	83.79
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	83.75
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	83.57
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	83.52
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	83.51
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.49
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	83.48
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	83.43
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	83.43
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	83.38
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	83.38
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.35
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	83.34
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	83.32
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	83.23
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	83.18
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	83.18
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	83.13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	83.06
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	83.06
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	83.05
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.04
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	82.9
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	82.87
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	82.86
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	82.85
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	82.82
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	82.8
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	82.66
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	82.63
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	82.6
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	82.29
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	82.22
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	82.1
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	82.06
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	82.0
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	81.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	81.86
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	81.84
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	81.76
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	81.68
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	81.64
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.62
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	81.52
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.37
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	81.27
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	81.24
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	81.23
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	81.12
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	80.92
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	80.72
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	80.7
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	80.6
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	80.53
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	80.42
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	80.25
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	80.16
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	80.04

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=1.9e-79  Score=700.43  Aligned_cols=524  Identities=30%  Similarity=0.433  Sum_probs=426.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ++.++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+......+.
T Consensus         2 ~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            2 NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG-GVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHT-TCHHHHHHSCCSSCTTSCCE
T ss_pred             CCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHc-CCHHHHHhhCCCccccccee
Confidence            34569999999999999999999999999999999999999999999999999999999 99999999887766554444


Q ss_pred             --eeecCCCCeeeeecCCCcc---ccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          120 --YCTSVTGPILGSVDHMQPQ---DFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       120 --~~~~~~G~~l~~~~~~~~~---~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                        ++....|..+.++......   .+. ..+|.....++|..|+++|.+.+.+.|+                   +|+++
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~  140 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATE-PCTPAGWAMLSQDKLEPILLAQARKHGG-------------------AIRFG  140 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTG-GGCSCCCBCCCHHHHHHHHHHHHHHTTC-------------------EEESS
T ss_pred             eeEEeccCCceeeeccccccccccccc-cCCCCcccccCHHHHHHHHHHHHHhCCC-------------------EEEeC
Confidence              5666677766533211110   011 1345557789999999999999999887                   99999


Q ss_pred             cEEEEEEEcCC----eEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCcccccc
Q 005134          195 HECVSVSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (712)
Q Consensus       195 ~~v~~v~~~~~----~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  270 (712)
                      ++|++++++++    +|++++.+.   .+ +++++|||||+|||++|.||+++|+++.+.......+.+.+.. ++....
T Consensus       141 ~~v~~i~~~~~~~~~~v~v~~~~~---~~-~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~-~~~~~~  215 (535)
T 3ihg_A          141 TRLLSFRQHDDDAGAGVTARLAGP---DG-EYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGIM  215 (535)
T ss_dssp             CEEEEEEEECGGGCSEEEEEEEET---TE-EEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEEC-CGGGTS
T ss_pred             CEEEEEEECCCCccccEEEEEEcC---CC-eEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEec-cChhhc
Confidence            99999999998    988888742   21 4689999999999999999999999998887777777777765 555443


Q ss_pred             ccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechh
Q 005134          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAE  349 (712)
Q Consensus       271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~  349 (712)
                       ...+..++++++++..+++++.+. .+.|.+.+.+.+.. .....++++.+.+.+++.++.....+++.....|++...
T Consensus       216 -~~~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  293 (535)
T 3ihg_A          216 -EPGTTGWYYLHHPEFKGTFGPTDR-PDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQGWEMAAR  293 (535)
T ss_dssp             -CTTCCEEEEEECSSCEEEEEECSS-TTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCEEEEEEEEEEEEE
T ss_pred             -cCCceEEEEEECCCceEEEEEecC-CCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCceeEEEeeEeeeeEE
Confidence             234456677788887777777653 35777776654433 344567889999999999997767788888889999999


Q ss_pred             hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      ++++|..  |||+|+|||||.|+|++|||||+||+||++|+|||+.+++|++.+.+|++|++||+|+++.+++.|..+++
T Consensus       294 ~a~~~~~--grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~  371 (535)
T 3ihg_A          294 IAERWRE--GRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYA  371 (535)
T ss_dssp             EESCSEE--TTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECcccc--CCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            9999984  99999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             HhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcc
Q 005134          430 AAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSL  509 (712)
Q Consensus       430 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (712)
                      .+.....        ..                                           +                ...
T Consensus       372 ~~~~~~~--------~~-------------------------------------------~----------------~~~  384 (535)
T 3ihg_A          372 QRMAPHM--------AE-------------------------------------------V----------------WDK  384 (535)
T ss_dssp             HHTCGGG--------TT-------------------------------------------T----------------SCC
T ss_pred             hhccccc--------Cc-------------------------------------------c----------------ccc
Confidence            5421000        00                                           0                001


Q ss_pred             cccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEc
Q 005134          510 QLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIA  589 (712)
Q Consensus       510 ~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~  589 (712)
                      .+++.++++||+|.+++|+.+++..      |. ....|.|+++||+|+||+||.. ++.++||+||+|.   +||||++
T Consensus       385 ~~~~~~~~~~~~y~~~~~~~~~~~~------~~-~~~~~~~~~~pG~r~p~~~l~~-~~~~~~~~dl~g~---~f~ll~~  453 (535)
T 3ihg_A          385 SVGYPETLLGFRYRSSAVLATDDDP------AR-VENPLTPSGRPGFRGPHVLVSR-HGERLSTVDLFGD---GWTLLAG  453 (535)
T ss_dssp             CCCHHHHHTSBCCCSTTCCCSCCCC------CS-BCCTTSCCCCTTSBCCCCEEEE-TTEEEEGGGGCSS---SEEEEEC
T ss_pred             ccccceeeeCcccCCCceecCCCCC------Cc-ccccCCCCCCCCCcCCCceeec-CCceeeHHHhcCC---ceEEEec
Confidence            1234467899999999999765421      11 1236899999999999999975 5667999999986   4999998


Q ss_pred             CCccchHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEE
Q 005134          590 PVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILV  669 (712)
Q Consensus       590 ~~~~~~~~~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLV  669 (712)
                      +++  ..|.+++.++++++|+|++++.|+++                   +.|.+        +.|.+.+|+++.|+|||
T Consensus       454 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~~--------~~~~~~~~~~~~~~~lv  504 (535)
T 3ihg_A          454 ELG--ADWVAAAEAVSAELGVPVRAYRVGAG-------------------LTDPE--------SAVSERYGIGKAGASLV  504 (535)
T ss_dssp             TTC--HHHHHHHHHHHHHHTCCEEEEEBTTT-------------------BBCSS--------CCHHHHHTCTTTCEEEE
T ss_pred             CCc--cHHHHHHHHHHHhcCCceEEEEeCCc-------------------cccCc--------chHHHHhCCCCCceEee
Confidence            754  57999999999999999999999421                   44532        68999999999999999


Q ss_pred             cCCceEEEeeCCCCCCChHHHHHHHHHHhhCC
Q 005134          670 RPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGI  701 (712)
Q Consensus       670 RPDg~VaWr~~~~~~~~~~~~l~~~~~~~~~~  701 (712)
                      |||||||||+... ++||.++|.++|++||||
T Consensus       505 RPD~~va~r~~~~-~~~~~~~l~~~~~~~l~~  535 (535)
T 3ihg_A          505 RPDGIVAWRTDEA-AADAAQTLEGVLRRVLDR  535 (535)
T ss_dssp             CTTSBEEEEESSC-CSSHHHHHHHHHHHHTTC
T ss_pred             CCCceeEEecCCC-CCCHHHHHHHHHHHHhcC
Confidence            9999999999975 889999999999999986

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=3e-69  Score=616.94  Aligned_cols=542  Identities=27%  Similarity=0.384  Sum_probs=378.6

Q ss_pred             ccCcCcCcccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHH
Q 005134           16 IKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVF   95 (712)
Q Consensus        16 ~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeil   95 (712)
                      +.-++.|+..+++...+ |.    .+.++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~-M~----~~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l   78 (549)
T 2r0c_A            4 SHHHHHHSSGLVPRGSH-MN----APIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELF   78 (549)
T ss_dssp             -------------------C----CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHH
T ss_pred             cccccccccCccchhhh-cC----CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHH
Confidence            33445566666554333 11    24568999999999999999999999999999999999888999999999999999


Q ss_pred             HhhhcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCcccc-ccccCCccccccChhHHHHHHHHHHHhcCceeec
Q 005134           96 RKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF-EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICT  174 (712)
Q Consensus        96 r~l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~-~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~  174 (712)
                      +++ |+.+++.+.+.+........++....|..+..++....... .....|.....++|..|+++|.+.+.+       
T Consensus        79 ~~l-Gl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-------  150 (549)
T 2r0c_A           79 RRW-GVAKQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE-------  150 (549)
T ss_dssp             HHT-TCHHHHHTSSCCTTSBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG-------
T ss_pred             HHc-CChHHHHhhcCCcccccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH-------
Confidence            999 99999998887664433345555566766554433211100 001234445789999999999998765       


Q ss_pred             cCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccc
Q 005134          175 SEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ  254 (712)
Q Consensus       175 ~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~  254 (712)
                                    . |+++++|+++++++++|++++.+..+|+  +++++|||||+|||++|.||+++|+++.+....+
T Consensus       151 --------------~-v~~~~~v~~~~~~~~~v~v~~~~~~~G~--~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~  213 (549)
T 2r0c_A          151 --------------R-LRTRSRLDSFEQRDDHVRATITDLRTGA--TRAVHARYLVACDGASSPTRKALGIDAPPRHRTQ  213 (549)
T ss_dssp             --------------G-EECSEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCE
T ss_pred             --------------h-cccCcEEEEEEEeCCEEEEEEEECCCCC--EEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccc
Confidence                          2 7899999999999999988887433353  3579999999999999999999999998877777


Q ss_pred             cEEEEEeecCccccccccCCCceEEEEeecC-CeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 005134          255 KLVSVHFLSKDLGDYLLNERPGMLFFIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL  333 (712)
Q Consensus       255 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~  333 (712)
                      .++.+.+..+++...+ ...+...+++++++ ..+++++.+. ...|.+.++. +. +  . ++++.+.+.++++++.. 
T Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~p~~~-~~~~~~~~~~-~~-~--~-~~~~~~~~~l~~~~~~~-  285 (549)
T 2r0c_A          214 VFRNILFRAPELRSLL-GERAALFFFLMLSSSLRFPLRALDG-RGLYRLTVGV-DD-A--S-KSTMDSFELVRRAVAFD-  285 (549)
T ss_dssp             EEEEEEEECTTHHHHH-GGGCCSEEEEEEETTEEEEEEESSS-SSEEEEEEEC-ST-T--C-CSCCCHHHHHHHHBCSC-
T ss_pred             eEEEEEEECCchHHhc-CCCCceEEEEECCCCcEEEEEEECC-CcEEEEEecC-CC-C--C-CCHHHHHHHHHHHhCCC-
Confidence            6777777654443222 12344566666776 5556666642 3567766642 11 1  1 56667788999998863 


Q ss_pred             CcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhh
Q 005134          334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETER  413 (712)
Q Consensus       334 ~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eR  413 (712)
                      ..+++.....|.+..+++++|+  .|||||+|||||.|+|++|||||+||+||+||+|||+++++|++.+.+|++|++||
T Consensus       286 ~~~~~~~~~~~~~~~~~a~~~~--~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR  363 (549)
T 2r0c_A          286 TEIEVLSDSEWHLTHRVADSFS--AGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEER  363 (549)
T ss_dssp             CCCEEEEEEEEEECCEECSCSE--ETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHH
T ss_pred             CceeEEEEecchhHhhhHHhhc--CCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4567777788999889999998  49999999999999999999999999999999999999999998999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccch
Q 005134          414 KPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGS  493 (712)
Q Consensus       414 rp~a~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  493 (712)
                      +|+++.+++.+..+.+.+......    +                                         .+...++.+.
T Consensus       364 ~~~a~~~~~~s~~~~~~~~~~~~~----~-----------------------------------------~~~~~~~~~~  398 (549)
T 2r0c_A          364 RPVAITSLEEANVNLRRTMDRELP----P-----------------------------------------GLHDDGPRGE  398 (549)
T ss_dssp             HHHHHHHHHC----------CCCC----T-----------------------------------------TTTCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccc----c-----------------------------------------cccccCcchH
Confidence            999999999887665544211000    0                                         0011223333


Q ss_pred             HHHHHHHHHHHc-CCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcce
Q 005134          494 SRLAKLRHIFEE-GKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIIS  572 (712)
Q Consensus       494 ~~~~~~~~~~~~-~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~S  572 (712)
                      ..|+.+.+.+.. .....+...+.++|++|++++|+.++..      ++.  ...|.|+.+||.|+||+||.+  +  +|
T Consensus       399 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~~~~~~------~~~--~~~~~~~~~~G~r~p~~~l~~--g--~~  466 (549)
T 2r0c_A          399 RIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPET------EVA--TGGWRPSARPGARAPHAWLTP--T--TS  466 (549)
T ss_dssp             HHHHHHHHHHHHTTGGGGGSCHHHHHCCCCCSTTSCCC-----------------CCCCCCTTSBCCCCBSSS--S--CB
T ss_pred             HHHHHHHHHHHhhcccccccccceEeccEeCCccccCCCCC------Ccc--ccccCCCCCCCCcCCCcEeCC--C--cC
Confidence            344444444432 1111222234578999999998833211      111  135788999999999999962  3  79


Q ss_pred             eeeCCCCCcceEEEEEcCCccchHHHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCc
Q 005134          573 TLDLVSGDKVEFLLIIAPVEESYHLARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDS  652 (712)
Q Consensus       573 t~Dl~~~~~~~f~Ll~~~~~~~~~~~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  652 (712)
                      |+||+|.   +|+||++.+ .  .|..++.++++..|+++.++.++                       |          
T Consensus       467 l~d~~~~---~~~ll~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-----------------------~----------  507 (549)
T 2r0c_A          467 TLDLFGR---GFVLLSFGT-T--DGVEAVTRAFADRHVPLETVTCH-----------------------A----------  507 (549)
T ss_dssp             GGGGCSS---SEEEEEESC-C--TTHHHHHHHHHHTTCCEEEEEEC-----------------------C----------
T ss_pred             HHHHcCC---ceEEEEcCC-c--hhHHHHHHHHHHhCCceEEEEec-----------------------c----------
Confidence            9999985   499999864 2  48777777888899999988872                       0          


Q ss_pred             cchhhhhcccCCceEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhhCC
Q 005134          653 LSWWRICKMTDMGAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGI  701 (712)
Q Consensus       653 ~~~~~~~~~~~~gavLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~~~  701 (712)
                      ..|.   ++++.++||||||||||||++.. ++++    ..+|.+++|+
T Consensus       508 ~~~~---~~~~~~~~LvRPDg~Vaw~~~~~-~~~~----~~~l~~~~~~  548 (549)
T 2r0c_A          508 PEIH---ALYERAHVLVRPDGHVAWRGDHL-PAEL----GGLVDKVRGA  548 (549)
T ss_dssp             HHHH---HHHCSSEEEECTTSBEEEEESSC-CSCH----HHHHHHHTTC
T ss_pred             chhh---hccCCCEEEECCCCceEEecCCC-CcCH----HHHHHHHhcc
Confidence            2344   45578999999999999999854 4554    4467777765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=1e-60  Score=556.41  Aligned_cols=556  Identities=21%  Similarity=0.272  Sum_probs=361.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh-----CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK-----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLW  115 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar-----~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~  115 (712)
                      ..++|||||||||+||++|+.|++     +|++|+||||++.+...+++..|+++++|+|+++ |+.+++.+.+.+....
T Consensus         6 ~~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~l-Gl~~~l~~~~~~~~~~   84 (665)
T 1pn0_A            6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTI   84 (665)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEE
T ss_pred             CCCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHC-CCHHHHHHhccccceE
Confidence            346899999999999999999999     9999999999998888999999999999999999 9999998877654321


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                      .  .+.....|..........   .....++.....++|..|+++|++.+.+.|.                ..++|++++
T Consensus        85 ~--~~~~~~~g~i~~~~~~~~---~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~----------------~~v~v~~g~  143 (665)
T 1pn0_A           85 A--LYNPDENGHIRRTDRIPD---TLPGISRYHQVVLHQGRIERRILDSIAEISD----------------TRIKVERPL  143 (665)
T ss_dssp             E--EEEECTTSCEEEEEEEES---SCTTSCSSCCEECCHHHHHHHHHHHHHHHHT----------------TSSCEECSE
T ss_pred             E--EEeCCCCcceEeecccCc---ccCCCCCCeeEEeeHHHHHHHHHHHHHhcCC----------------CceEEEeCC
Confidence            1  122222233211100000   0001223345679999999999999998760                013899999


Q ss_pred             EEEEEEEcC--------CeEEEEEEec---------------------------------------cCCceeeEEEEecE
Q 005134          196 ECVSVSATD--------QCINVIASFL---------------------------------------KEGKCTERNIQCNI  228 (712)
Q Consensus       196 ~v~~v~~~~--------~~v~v~v~~~---------------------------------------~~g~~~~~~i~ad~  228 (712)
                      +++++++++        ++|++++...                                       .+|+  .++++|||
T Consensus       144 ~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~--~~~i~A~~  221 (665)
T 1pn0_A          144 IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGE--IETVHCKY  221 (665)
T ss_dssp             EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTC--EEEEEEEE
T ss_pred             EEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCc--eEEEEeCE
Confidence            999999875        5788887642                                       1232  36899999


Q ss_pred             EEeccCCCchhhcccCCCcccccccccEEEEEeec-CccccccccCCCceEEEEee-cCCeEEEEEecCCCCeEEEEEec
Q 005134          229 LIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNERPGMLFFIFN-TEAIGVLVAHDLKEGEFILQVPF  306 (712)
Q Consensus       229 VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~  306 (712)
                      ||||||++|.||+++|+++.|......+..+.... .++.     ... ..+++.. +.+..++++.+.  +.+.+.+.+
T Consensus       222 VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p-----~~~-~~~~~~~~~~g~~~~~P~~~--~~~r~~~~~  293 (665)
T 1pn0_A          222 VIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFP-----DIR-SRCAIHSAESGSIMIIPREN--NLVRFYVQL  293 (665)
T ss_dssp             EEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCT-----TTT-SEEEEECSSSCEEEEEECST--TCEEEEEEE
T ss_pred             EEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCC-----Ccc-eEEEEEeCCCceEEEEEcCC--CEEEEEEEe
Confidence            99999999999999999887765433332222211 1111     111 1222222 344444555443  334333332


Q ss_pred             CCCC-----CCCCCCCHHHHHHHHHHHhCCCCCcceEE-EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchh
Q 005134          307 YPPQ-----QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMN  380 (712)
Q Consensus       307 ~~~~-----~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n  380 (712)
                      ....     ......+.+.+.+.+++.++.....++.. ....|.+..+++++|.. .|||||+|||||.|+|++|||||
T Consensus       294 ~~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~-~gRV~L~GDAAH~~~P~~GqG~N  372 (665)
T 1pn0_A          294 QARAEKGGRVDRTKFTPEVVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSK-DERVFIAGDACHTHSPKAGQGMN  372 (665)
T ss_dssp             CC----------CCCCHHHHHHHHHHHHTTSCCEEEEEEEEEEEEEEEEECSCSEE-TTTEEECGGGTEECCSTTCCHHH
T ss_pred             CCccccccccCcCCCCHHHHHHHHHHHhCcccCceeeEEEEEeeeccceehhhccc-CCCEEEEECccccCCCcccCCcc
Confidence            2211     12345678888888888887432333221 22344566788999972 39999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCC
Q 005134          381 TGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVL  460 (712)
Q Consensus       381 ~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  460 (712)
                      +||+||+||+|||+.+++|++.+.+|++|+.||+|+++.++..+....+.+..-+.....                    
T Consensus       373 ~gi~DA~nLawkLa~vl~g~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~~~~~~~~--------------------  432 (665)
T 1pn0_A          373 TSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVA--------------------  432 (665)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCSSTT--------------------
T ss_pred             hhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--------------------
Confidence            999999999999999999999999999999999999999998776554433211100000                    


Q ss_pred             cHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccccCccccCCccccCCCCCCCCCCC
Q 005134          461 PSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEA  540 (712)
Q Consensus       461 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~  540 (712)
                                                  ++.+.. .+.+.+.+....    .| ...++++|..++++.++..       
T Consensus       433 ----------------------------~~~~~~-~~~~~~~~~~~~----~~-~~g~~~~Y~~s~l~~~~~~-------  471 (665)
T 1pn0_A          433 ----------------------------DEMGVS-MDVFKEAFVKGN----EF-ASGTAINYDENLVTDKKSS-------  471 (665)
T ss_dssp             ----------------------------CTTSBC-HHHHHHHHHHHH----HH-HTTCCCCCCSBTTBCSTTC-------
T ss_pred             ----------------------------cccchh-HHHHHHHHHHhh----cc-ccccCcccCCCcccCCCcc-------
Confidence                                        000000 011111111100    01 1248899999998754211       


Q ss_pred             CCCCccccccCCCCCCCCCcceeecC-CCCcceeeeCCCCCcceEEEEEcCCcc-chHHHHHHHHhhhhcC---------
Q 005134          541 PTGHRRDFVPSANPGSRLPHMNVRVL-STEIISTLDLVSGDKVEFLLIIAPVEE-SYHLARAALKVAEDFK---------  609 (712)
Q Consensus       541 ~~~~~~~~~p~~~pG~R~PH~~l~~~-~~~~~St~Dl~~~~~~~f~Ll~~~~~~-~~~~~~aa~~~~~~~g---------  609 (712)
                          ...+.++.+||.|+||+||.+. ++..++|+|+++.+ +.|+||++.+.. ...|..++.++++.++         
T Consensus       472 ----~~~~~~~~~~G~r~p~~~~~~~~~g~~~~l~~~l~~~-g~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  546 (665)
T 1pn0_A          472 ----KQELAKNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTD-GRFRIIVFAGKATDATQMSRIKKFAAYLDSENSVISRY  546 (665)
T ss_dssp             ----CGGGBTTSCTTSBCCCCEEEETTTTEEEEGGGGCCCS-SCEEEEEEEECTTSHHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             ----ccccCCCCCCcCCCCCCeEEecCCCcEEEHhHhhccC-CCEEEEEecCCcccchhHHHHHHHHHHhhccccHHhhc
Confidence                1235677899999999999752 45678999999632 249988875432 1248888877777653         


Q ss_pred             --------CceEEEEEcCCCCc-chhhhhhcc-cc----CCCCcccchhhhcccCCccchhhhhcccC-Cce-EEEcCCc
Q 005134          610 --------VPTKVCVLWPAGTT-NEVEFRSAA-EL----APWKNYIDVEEVKRSSDSLSWWRICKMTD-MGA-ILVRPDD  673 (712)
Q Consensus       610 --------~~~~~~~~~~~~~~-~~~~~~~~~-~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~ga-vLVRPDg  673 (712)
                              ..++++.|.+.... .+-.+ -.. ..    +.|+.|.|... . ....+.|++.+|+.+ .|+ |||||||
T Consensus       547 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~d~~~-~-~~~~~~~~~~~g~~~~~g~~vlvRPD~  623 (665)
T 1pn0_A          547 TPKGADRNSRIDVITIHSCHRDDIEMHD-FPAPALHPKWQYDFIYADCDS-W-HHPHPKSYQAWGVDETKGAVVVVRPDG  623 (665)
T ss_dssp             SBTTSCTTSSEEEEEEESSCTTSCCGGG-SCTTTTSCTTCCSSEEECSCC-S-SSCCCCHHHHHTBCTTTCEEEEECTTS
T ss_pred             CCcccCccceeEEEEEecCCCCccchhh-CCHHHcCcccchheEeecCcc-c-ccccccHHHHcCCCCCCceEEEECCCC
Confidence                    35888888433111 00000 000 11    11233444110 0 001257999999987 566 8999999


Q ss_pred             eEEEeeCCCCCCChHHHHHHHHHHhhCCC
Q 005134          674 HIAWRSKSGVSGNPKLEMEMAFSAVLGIK  702 (712)
Q Consensus       674 ~VaWr~~~~~~~~~~~~l~~~~~~~~~~~  702 (712)
                      |||||+. .   +..++|...|..++...
T Consensus       624 yV~~~~~-~---~~~~~l~~~~~~~~~~~  648 (665)
T 1pn0_A          624 YTSLVTD-L---EGTAEIDRYFSGILVEP  648 (665)
T ss_dssp             BEEEEEC-T---TTHHHHHHHHHTTBCCC
T ss_pred             cEEEEec-c---ccHHHHHHHHHHHhcCc
Confidence            9999986 2   23578999999988653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=1.4e-60  Score=538.52  Aligned_cols=486  Identities=22%  Similarity=0.249  Sum_probs=332.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ++++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+. .+.   ....+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~~---~~~~~   84 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR-GILPAFGPV-ETS---TQGHF   84 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHT-TCGGGGCSC-CEE---SEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHC-CCHHHHHhc-ccc---cccee
Confidence            4568999999999999999999999999999999999988899999999999999999 998887654 221   11111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                          .+..   ++.      .....+. ....++|..|+++|.+.+.+.|+                   +|+++++|++
T Consensus        85 ----~~~~---~~~------~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~  132 (499)
T 2qa2_A           85 ----GGRP---VDF------GVLEGAHYGVKAVPQSTTESVLEEWALGRGA-------------------ELLRGHTVRA  132 (499)
T ss_dssp             ----TTEE---EEG------GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEE
T ss_pred             ----ccee---ccc------ccCCCCCCceEecCHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEE
Confidence                1111   111      0001111 23678999999999999998887                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++++++|++++.+   +++ +++++|||||+|||++|.||+++|+++.+......++...+...+        .+...+
T Consensus       133 i~~~~~~v~v~~~~---~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~--------~~~~~~  200 (499)
T 2qa2_A          133 LTDEGDHVVVEVEG---PDG-PRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCE--------ITPRPI  200 (499)
T ss_dssp             EEECSSCEEEEEEC---SSC-EEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCC--------CCCEEE
T ss_pred             EEEeCCEEEEEEEc---CCC-cEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECC--------CCcceE
Confidence            99999999888763   322 367999999999999999999999998876655555555443321        112234


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCC--CCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhcccccc
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~  357 (712)
                      +.+.++...++++.+  ++.|.+.+.....  .......+.+.+.+.+++.++......++.....|....+++++|+  
T Consensus       201 ~~~~~~g~~~~~P~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--  276 (499)
T 2qa2_A          201 GETVPLGMVMSAPLG--DGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPVWVSAFGDPARQVSAYR--  276 (499)
T ss_dssp             EEEETTEEEEEEECS--SSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCTTCEEEEEEEECCCEEECSCSE--
T ss_pred             EEECCCeEEEEEEcC--CCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCCccceeEEEEEeCCcEEccccc--
Confidence            556666544555543  3444444332121  1222456788888999998885433234444456777788899998  


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccc
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA  437 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~  437 (712)
                      .|||||+|||||.|+|++|||||+||+||+||+|||+++++|++.+.+|++|++||+|+++.++..+......+..    
T Consensus       277 ~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~~~----  352 (499)
T 2qa2_A          277 RGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLS----  352 (499)
T ss_dssp             ETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            4999999999999999999999999999999999999999999889999999999999999999887654443321    


Q ss_pred             cCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccc
Q 005134          438 LGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAED  517 (712)
Q Consensus       438 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (712)
                         ++. ..                .++..++ .           .+   ..|..   +..+...+            ..
T Consensus       353 ---~~~-~~----------------~~R~~~~-~-----------~~---~~~~~---~~~~~~~~------------~~  382 (499)
T 2qa2_A          353 ---GDE-MQ----------------PLRDVLS-E-----------LI---RYDEV---SRHLAGMV------------SG  382 (499)
T ss_dssp             ---CGG-GH----------------HHHHHHH-H-----------HH---TSSHH---HHHHHHHH------------HT
T ss_pred             ---Cch-HH----------------HHHHHHH-H-----------hh---cCHHH---HHHHHHHH------------hC
Confidence               000 00                0111000 0           00   01111   01111111            13


Q ss_pred             cCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH
Q 005134          518 LGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL  597 (712)
Q Consensus       518 lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~  597 (712)
                      ++++|.++.    +                  +...||.|+||+||.. +++.+||+||++.+  .|+||++.+.  ..|
T Consensus       383 ~~~~Y~~~~----~------------------~~~~~G~r~p~~~l~~-~~~~~~l~d~~~~~--~~~ll~~~~~--~~~  435 (499)
T 2qa2_A          383 LDIRYEVDG----G------------------DHPLLGMRMPHQELVR-AHGKTSTTELLHPA--RGVLLDIADD--AEV  435 (499)
T ss_dssp             TTCCCCCCS----C------------------SCTTTTSBCCCCEEEC-SSSEEETTGGGTTC--SEEEEECSCC--HHH
T ss_pred             CCCccCCCC----C------------------CCCCCCCCCCCCeeec-CCCceeHHHHhcCC--eEEEEEecCc--ccc
Confidence            688997631    0                  0125899999999975 44468999999765  4999998642  233


Q ss_pred             HHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEE
Q 005134          598 ARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAW  677 (712)
Q Consensus       598 ~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaW  677 (712)
                      ..    ++....-.++++...                  +   .+         ...|   +++.+.++|||||||||||
T Consensus       436 ~~----~~~~~~~~~~~~~~~------------------~---~~---------~~~~---~~~~~~~~~LvRPDg~vaw  478 (499)
T 2qa2_A          436 RE----AATGWSDRVDIVTAS------------------L---HD---------APPQ---GPLSDARAVLVRPDGYVAW  478 (499)
T ss_dssp             HH----HTGGGTTTEEEEECE------------------E---SS---------CCSS---STTTTCSEEEECTTSBEEE
T ss_pred             hh----hhhcccccEEEecCc------------------c---cc---------cccc---cccCCCcEEEECCCCEEEE
Confidence            22    111111123322210                  0   00         0123   3567789999999999999


Q ss_pred             eeCCCCCCChHHHHHHHHHHhhCCC
Q 005134          678 RSKSGVSGNPKLEMEMAFSAVLGIK  702 (712)
Q Consensus       678 r~~~~~~~~~~~~l~~~~~~~~~~~  702 (712)
                      |++..  .   +.|.++|.+++|..
T Consensus       479 ~~~~~--~---~~l~~~l~~~~~~~  498 (499)
T 2qa2_A          479 ISPGS--R---AGLTEALDRWFGPA  498 (499)
T ss_dssp             EESSC--S---SCHHHHHHHHHCSC
T ss_pred             EeCCc--h---HHHHHHHHHhhCCC
Confidence            98742  2   35899999998854

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=2.1e-60  Score=537.21  Aligned_cols=486  Identities=21%  Similarity=0.260  Sum_probs=332.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ++++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+. .+.   ....+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~~---~~~~~   83 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR-GILPRFGEV-ETS---TQGHF   83 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTT-TCGGGGCSC-CBC---CEEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHC-CCHHHHHhc-ccc---ccccc
Confidence            4669999999999999999999999999999999999888899999999999999999 998887654 221   11111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                          .+..   ++..   ..   ..+. ....++|..|+++|.+.+.+.|+                   +|+++++|++
T Consensus        84 ----~~~~---~~~~---~~---~~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~  131 (500)
T 2qa1_A           84 ----GGLP---IDFG---VL---EGAWQAAKTVPQSVTETHLEQWATGLGA-------------------DIRRGHEVLS  131 (500)
T ss_dssp             ----TTEE---EEGG---GS---TTGGGCEEEEEHHHHHHHHHHHHHHTTC-------------------EEEETCEEEE
T ss_pred             ----ccee---cccc---cC---CCCCCceeecCHHHHHHHHHHHHHHCCC-------------------EEECCcEEEE
Confidence                1111   1110   00   1111 23678999999999999998887                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++++++|++++.+   +++ +++++|||||+|||++|.||+++|+++.+......++...+...+        .+...+
T Consensus       132 i~~~~~~v~v~~~~---~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  199 (500)
T 2qa1_A          132 LTDDGAGVTVEVRG---PEG-KHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE--------LQPRMI  199 (500)
T ss_dssp             EEEETTEEEEEEEE---TTE-EEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC--------CCCEEE
T ss_pred             EEEcCCeEEEEEEc---CCC-CEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC--------CCCceE
Confidence            99999999888763   322 367999999999999999999999998876655555554443221        122234


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCC--CCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhcccccc
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~  357 (712)
                      +.+.++...++++.+  ++.|.+.+.....  .......+.+.+.+.+++.++......++.....|....+++++|+. 
T Consensus       200 ~~~~~~g~~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-  276 (500)
T 2qa1_A          200 GETLPGGMVMVGPLP--GGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPVWVSAFGNATRQVTEYRR-  276 (500)
T ss_dssp             EEEETTEEEEEEEET--TTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCTTSEEEEEEEEECCEEECSCSEE-
T ss_pred             EEECCCcEEEEEEcC--CCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCCccceeEEEEeccCcEEcccccc-
Confidence            556666555555554  3445444332121  11223467888889999988854332344444568777888999984 


Q ss_pred             CCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhcccccc
Q 005134          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA  437 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~~  437 (712)
                       |||||+|||||.|+|++|||||+||+||+||+|||+++++|++.+.+|++|++||+|+++.++..+......+..    
T Consensus       277 -grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~~~----  351 (500)
T 2qa1_A          277 -GRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLS----  351 (500)
T ss_dssp             -TTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             -CCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence             999999999999999999999999999999999999999999899999999999999999999887654433311    


Q ss_pred             cCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCcccccccccc
Q 005134          438 LGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAED  517 (712)
Q Consensus       438 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (712)
                         ++. ..                .++..++ .           .+   ..|..   +..+...+            ..
T Consensus       352 ---~~~-~~----------------~~R~~~~-~-----------~~---~~~~~---~~~~~~~~------------~g  381 (500)
T 2qa1_A          352 ---GPE-VQ----------------PLRDVLT-E-----------LI---QYGEV---ARHLAGMV------------SG  381 (500)
T ss_dssp             ---CGG-GH----------------HHHHHHH-H-----------HH---TSHHH---HHHHHHHH------------HS
T ss_pred             ---Cch-HH----------------HHHHHHH-H-----------hh---cCHHH---HHHHhhhh------------cc
Confidence               000 00                0111000 0           00   01100   01111111            13


Q ss_pred             cCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH
Q 005134          518 LGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL  597 (712)
Q Consensus       518 lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~  597 (712)
                      ++++|.++.    .                  +...||.|+||+||.. +++.+||+||++.+  .|+||++.+.  ..|
T Consensus       382 ~~~~Y~~~~----~------------------~~~~~G~r~p~~~l~~-~~~~~~l~d~~~~~--~~~ll~~~~~--~~~  434 (500)
T 2qa1_A          382 LEITYDVGT----G------------------SHPLLGKRMPALELTT-ATRETSSTELLHTA--RGVLLDLADN--PRL  434 (500)
T ss_dssp             TTCCCCCCC----C------------------SCTTTTSBCCCCEEEC-SSCEEEHHHHTTTC--CEEEEETTCC--HHH
T ss_pred             CCCccCCCC----C------------------cCCcCCCCCCCCeeec-CCCcEeHHHHhCCC--eEEEEEeCCc--ccc
Confidence            688897631    0                  0125899999999975 44468999999765  4999998642  234


Q ss_pred             HHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEEE
Q 005134          598 ARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIAW  677 (712)
Q Consensus       598 ~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~VaW  677 (712)
                      ...    +....-.++++...                  +   .+         ...|   +++.+.++|||||||||||
T Consensus       435 ~~~----~~~~~~~~~~~~~~------------------~---~~---------~~~~---~~~~~~~~~LvRPDg~vaw  477 (500)
T 2qa1_A          435 RAR----AAAWSDRVDIVTAV------------------P---GE---------VSAT---SGLRDTTAVLIRPDGHVAW  477 (500)
T ss_dssp             HHH----HGGGTTTEEEEECE------------------E---CC---------CCTT---SSCTTCCEEEECTTSBEEE
T ss_pred             hhh----hhccccceEEecCc------------------c---cc---------cccc---cccCCCcEEEECCCcEEEE
Confidence            321    11111123322210                  0   00         0123   4567789999999999999


Q ss_pred             eeCCCCCCChHHHHHHHHHHhhCCC
Q 005134          678 RSKSGVSGNPKLEMEMAFSAVLGIK  702 (712)
Q Consensus       678 r~~~~~~~~~~~~l~~~~~~~~~~~  702 (712)
                      |++..  .   ..|.++|.+++|..
T Consensus       478 ~~~~~--~---~~l~~~l~~~~~~~  497 (500)
T 2qa1_A          478 AAPGS--H---HDLPMALERWFGAP  497 (500)
T ss_dssp             EESSC--S---SCHHHHHHHHHCSC
T ss_pred             EeCCc--h---HHHHHHHHHHhCCC
Confidence            98742  2   35899999999975

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=7e-58  Score=531.62  Aligned_cols=547  Identities=20%  Similarity=0.255  Sum_probs=341.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .++||+||||||+||++|+.|++ +|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...   ..+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~l-Gl~~~~~~~~~~~~~---~~~  106 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAF-EFADSILKEACWIND---VTF  106 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHT-TCHHHHHHHSEEECE---EEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHc-CcHHHHHHhcccccc---eEE
Confidence            46899999999999999999999 9999999999999988999999999999999999 999999887654422   122


Q ss_pred             eec-C--CCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134          121 CTS-V--TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (712)
Q Consensus       121 ~~~-~--~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v  197 (712)
                      ... .  .|.... ......  .....++.....++|..|+++|.+.+.+.|+                 +++|+++++|
T Consensus       107 ~~~~~~~~g~~~~-~~~~~~--~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~-----------------~v~v~~~~~v  166 (639)
T 2dkh_A          107 WKPDPGQPGRIAR-HGRVQD--TEDGLSEFPHVILNQARVHDHYLERMRNSPS-----------------RLEPHYARRV  166 (639)
T ss_dssp             EEECTTSTTCEEE-EEEEES--SCTTSCSSCEEECCHHHHHHHHHHHHHHSTT-----------------CCCCBCSEEE
T ss_pred             ECCCCCCCcceEe-ecccCc--ccCCCCCCceEeeCHHHHHHHHHHHHHhCCC-----------------CcEEecCCEE
Confidence            211 1  232211 100000  0001123334678999999999999998863                 1389999999


Q ss_pred             EEEEEcCC----eEEEEEEec---cCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeec-Cccccc
Q 005134          198 VSVSATDQ----CINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDY  269 (712)
Q Consensus       198 ~~v~~~~~----~v~v~v~~~---~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~-~~l~~~  269 (712)
                      ++++++++    +|++++...   .+|+  .++++|||||+|||++|.||+++|+++.|......+..+.... .++.. 
T Consensus       167 ~~l~~~~~~~~~~v~v~~~~~~~~~~G~--~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~-  243 (639)
T 2dkh_A          167 LDVKVDHGAADYPVTVTLERCDAAHAGQ--IETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPD-  243 (639)
T ss_dssp             EEEEECTTCSSCCEEEEEEECSGGGTTC--EEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTT-
T ss_pred             EEEEECCCCCcCCEEEEEEeccccCCCC--eEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCc-
Confidence            99998864    688877641   1342  3589999999999999999999999888766544433332211 11111 


Q ss_pred             cccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCC--CC--CCCCCCCHHHHHHHHHHHhCCCCCcceE-EEeecc
Q 005134          270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYP--PQ--QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPW  344 (712)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~e~~~~~i~~~~g~~~~~~~i-~~~~~w  344 (712)
                         .. .. +.+..+.+..++++.+.+ ..+.+.+....  ..  ......+.+.+.+.+++.++.....+.. .....|
T Consensus       244 ---~~-~~-~~~~~~~g~~~~~P~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (639)
T 2dkh_A          244 ---VR-YK-VAIQSEQGNVLIIPREGG-HLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEVKNVPWWSVY  317 (639)
T ss_dssp             ---TT-SE-EEEEETTEEEEEEECTTS-SCEEEEEECC-----------CCCHHHHHHHHHHHHTTSCEEEEEEEEEEEE
T ss_pred             ---cc-ee-EEEEcCCceEEEEEcCCC-cEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcccCcceeeeEEEec
Confidence               11 11 222224433344444322 13433332222  11  1223467788888888888742222221 122345


Q ss_pred             eechhhhccccc----------cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhh
Q 005134          345 VMHAEVAEKFLC----------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERK  414 (712)
Q Consensus       345 ~~~~~va~~~~~----------~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRr  414 (712)
                      .+..+++++|+.          ..|||||+|||||.|+|++|||||+||+||+||+|||+++++|++.+.+|++|++||+
T Consensus       318 ~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~a~~~lL~~Ye~eR~  397 (639)
T 2dkh_A          318 EIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQ  397 (639)
T ss_dssp             CCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTSBCGGGGHHHHHHHH
T ss_pred             ccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            556678888870          1499999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchH
Q 005134          415 PIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSS  494 (712)
Q Consensus       415 p~a~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  494 (712)
                      |+++.+++.+....+.+..       .+.....              .                             +. 
T Consensus       398 ~~a~~~~~~s~~~~~~~~~-------~~~~~~~--------------~-----------------------------~~-  426 (639)
T 2dkh_A          398 VVAQQLIDFDREWAKMFSD-------PAKEGGQ--------------G-----------------------------GV-  426 (639)
T ss_dssp             HHHHHHHHHHHHSCC-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CCccccc--------------c-----------------------------cc-
Confidence            9999988876432211100       0000000              0                             00 


Q ss_pred             HHHHHHHHHHcCCcccccccccccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecC-CCCccee
Q 005134          495 RLAKLRHIFEEGKSLQLQFPAEDLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVL-STEIIST  573 (712)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~-~~~~~St  573 (712)
                      ....+.+.+....    .| ...+|++|.+++|+.+++.            ..+.+..+||.|+||+||.+. ++..++|
T Consensus       427 ~~~~~~~~~~~~~----~~-~~g~~~~Y~~s~l~~~~~~------------~~~~~~~~~G~r~p~~~~~~~~~g~~~~l  489 (639)
T 2dkh_A          427 DPKEFQKYFEQHG----RF-TAGVGTHYAPSLLTGQAKH------------QALASGFTVGMRFHSAPVVRVCDAKPVQL  489 (639)
T ss_dssp             CHHHHHHHHHHHH----HH-HTTCCCCCCSSSSSCCCTT------------GGGBTTSCTTSBCCCCEEEETTTCCEEEG
T ss_pred             cHHHHHHHHHHhc----cc-cccCCcccCCCCccCCCCc------------cccCCCCCCcCCCCCCeEEecCCCCEEEH
Confidence            0001111111000    01 1248999999998754311            124556789999999999752 5667899


Q ss_pred             eeCCCCCcceEEEEEcCCccchHHH-HHHHHhhhhc------------------CCceEEEEEcCCCCc-chhhhhhccc
Q 005134          574 LDLVSGDKVEFLLIIAPVEESYHLA-RAALKVAEDF------------------KVPTKVCVLWPAGTT-NEVEFRSAAE  633 (712)
Q Consensus       574 ~Dl~~~~~~~f~Ll~~~~~~~~~~~-~aa~~~~~~~------------------g~~~~~~~~~~~~~~-~~~~~~~~~~  633 (712)
                      +|+++.+ +.|+||++.+.....|. .++.++++.+                  +-.++++.|.+.... .+-.+ -...
T Consensus       490 ~~~~~~~-g~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~p~~  567 (639)
T 2dkh_A          490 GHCGKAD-GRWRLYAFAAQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDIDSIFDLRAVFPQAYTEVALET-LPAL  567 (639)
T ss_dssp             GGGCCSS-SCEEEEEECCTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCTTSSEEEEEECSSCGGGCCGGG-SCGG
T ss_pred             HHhhccC-CCEEEEEecCCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCcCceEEEEEEecCCCCccchhh-CcHh
Confidence            9999632 24999998643211122 2222333222                  124777777433110 00000 0000


Q ss_pred             c----------CCCCcccchhhhcccCCccchhhhhcccC-Cce-EEEcCCceEEEeeCCCCCCChHHHHHHHHHHhh
Q 005134          634 L----------APWKNYIDVEEVKRSSDSLSWWRICKMTD-MGA-ILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVL  699 (712)
Q Consensus       634 ~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~ga-vLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~  699 (712)
                      .          +.|..|.|..    ..+.+.|++.+|+.+ .|+ |||||||||||+...   ++ .+.|...|..++
T Consensus       568 ~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~~g~~~~~g~~v~vRPD~yv~~~~~~---~~-~~~l~~~~~~~~  637 (639)
T 2dkh_A          568 LLPPKGQLGMIDYEKVFSPDL----KNAGQDIFELRGIDRQQGALVVVRPDQYVAQVLPL---GD-HAALSAYFESFM  637 (639)
T ss_dssp             GSCEETTTTEECCCSEEECCC----SSTTCCHHHHTTBCTTTCEEEEECTTSBEEEEECT---TC-HHHHHHHHHTTB
T ss_pred             hCCcccccccccceeEEeCCC----cccccchHHHhCCCCCceEEEEECCCCceEEeech---hh-HHHHHHHHHHHh
Confidence            0          1123344410    000146888999987 355 899999999999762   23 466788777654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=5.1e-54  Score=491.47  Aligned_cols=496  Identities=22%  Similarity=0.287  Sum_probs=323.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .+++||+||||||+||++|+.|+++|++|+||||.+.+...+++..|+++++++|+++ |+.+++.+.+......   . 
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~l-Gl~~~l~~~~~~~~~~---~-  121 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLDRFLEGTQVAKGL---P-  121 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTT-TCHHHHTTSCCBCSBC---C-
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHc-CChHHHHhcCcccCCc---e-
Confidence            4568999999999999999999999999999999999988999999999999999999 9999998876543210   0 


Q ss_pred             eecCCCCeeeeecCCCccccccccCCc-cccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~-~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                         ..+.....++      +.....+. ..+.++|..|++.|.+.+.+.|+                   +|+++++|++
T Consensus       122 ---~~~~~~~~~~------~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~~~v~~  173 (570)
T 3fmw_A          122 ---FAGIFTQGLD------FGLVDTRHPYTGLVPQSRTEALLAEHAREAGA-------------------EIPRGHEVTR  173 (570)
T ss_dssp             ---BTTBCTTCCB------GGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTE-------------------ECCBSCEEEE
T ss_pred             ---eCCccccccc------ccccCCCCCeeEEeCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence               0111000011      11001111 24578999999999999998886                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++++++|++++... +|   +++++|||||+|||++|.||+.+|+++.+..+....+...+......      ..  ..
T Consensus       174 l~~~~~~v~v~~~~~-~G---~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~------~~--~~  241 (570)
T 3fmw_A          174 LRQDAEAVEVTVAGP-SG---PYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE------VP--RR  241 (570)
T ss_dssp             CCBCSSCEEEEEEET-TE---EEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS------SC--CC
T ss_pred             EEEcCCeEEEEEEeC-CC---cEEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC------cc--eE
Confidence            999999998887632 33   14799999999999999999999999988776665555544332111      00  11


Q ss_pred             EEeecCCeEEE-EEecCCCC-eEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEE-Eeecceechhhhccccc
Q 005134          280 FIFNTEAIGVL-VAHDLKEG-EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC  356 (712)
Q Consensus       280 ~~~~~~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~-~~~~w~~~~~va~~~~~  356 (712)
                      +.+.+.+..++ ++.+.+.. ++++..+..+........+.+.+.+.+++.++......+.. ....|++..+.+++|+.
T Consensus       242 ~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  321 (570)
T 3fmw_A          242 WERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRS  321 (570)
T ss_dssp             CCCCCSSCEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSSCCCCCCSCCEEEEEECCCCEECSCSEE
T ss_pred             EEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhhcccccceeeeeeEEeeccccccccccc
Confidence            12233332222 23322212 34444432221222345677888888887777544333443 45567788888999984


Q ss_pred             cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHhccccc
Q 005134          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS  436 (712)
Q Consensus       357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~~~~~~  436 (712)
                        |||+|+|||||.++|++|||||+||+||.+|+|+|++++++.+.+.+|++|++||+|++..++..+....+.+..   
T Consensus       322 --grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~---  396 (570)
T 3fmw_A          322 --GRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMRP---  396 (570)
T ss_dssp             --TTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred             --CCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence              999999999999999999999999999999999999999999999999999999999999999888655443321   


Q ss_pred             ccCCCcchhhhhHHHhhcccCCCCcHHHHHHHHHhHhhhhhhhhhhhcccCCCccchHHHHHHHHHHHcCCccccccccc
Q 005134          437 ALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAE  516 (712)
Q Consensus       437 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (712)
                          ++.....+                +...+.            .+   ..|       .+++.+..        ...
T Consensus       397 ----~~~~~~~l----------------R~~~~~------------l~---~~~-------~~~~~~~~--------~~~  426 (570)
T 3fmw_A          397 ----DEQHTTPL----------------RGFVEE------------LL---GTD-------EVNRYFTG--------MIT  426 (570)
T ss_dssp             ----CTTTHHHH----------------HHHHHH------------HT---TSH-------HHHHHHHH--------HHH
T ss_pred             ----CchHHHHH----------------HHHHHH------------Hh---cCH-------HHHHHHHH--------HHh
Confidence                11001111                111110            00   011       11111110        011


Q ss_pred             ccCccccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchH
Q 005134          517 DLGFRYLKGALVPDSNCEVGAPEAPTGHRRDFVPSANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYH  596 (712)
Q Consensus       517 ~lgy~Y~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~  596 (712)
                      .++.+|+.+  ...++.        .       ....+|.|+|+++|...++..+.++||+..++  |+||.+.+..  .
T Consensus       427 g~~~~Y~~~--~~~~~~--------~-------~~~~~G~r~pd~~l~~~~g~~~~l~~~l~~~~--~~ll~~~~~~--~  485 (570)
T 3fmw_A          427 GTDVRYATF--APAASA--------R-------PHPWPGRFAGGLVLSRPSGEPVPVAELLRSAR--PLLLDLAGRA--D  485 (570)
T ss_dssp             STTCCCCCS--CC------------C-------CCSSTTCBCTTCEECCSTTCCEEHHHHSTTCC--CEEECSSCBH--H
T ss_pred             CCCcccCCC--CCCCCC--------C-------CCccccCcCCCceeecCCCcceeHHHHhcCCe--EEEEEecCCc--c
Confidence            356778654  111000        0       12369999999999742333489999998764  9999986431  1


Q ss_pred             HHHHHHHhhhhcCCceEEEEEcCCCCcchhhhhhccccCCCCcccchhhhcccCCccchhhhhcccCCceEEEcCCceEE
Q 005134          597 LARAALKVAEDFKVPTKVCVLWPAGTTNEVEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGAILVRPDDHIA  676 (712)
Q Consensus       597 ~~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~gavLVRPDg~Va  676 (712)
                      .    ..++.                             +|.+..|....       ...+.   .+-.+||||||||||
T Consensus       486 ~----~~~~~-----------------------------~~~~~~~~~~~-------~~~~~---~~~~~~lvrpdg~va  522 (570)
T 3fmw_A          486 L----REATR-----------------------------PWSDRVSVVAG-------EATVE---PPAQALLVRPDGYVA  522 (570)
T ss_dssp             H----HHTTT-----------------------------TCSSCEEECCC-------CSCCS---SCCSEEEECTTSBEE
T ss_pred             h----hhhcc-----------------------------ccCCceEEEec-------ccCCC---CCceEEEECCCceEE
Confidence            2    12222                             22222222110       00000   011589999999999


Q ss_pred             EeeCCCCCCChHHHHHHHHHHhhCCCC
Q 005134          677 WRSKSGVSGNPKLEMEMAFSAVLGIKP  703 (712)
Q Consensus       677 Wr~~~~~~~~~~~~l~~~~~~~~~~~~  703 (712)
                      |.++.  + +....|.++|.+.+|...
T Consensus       523 w~~~~--~-~~~~~~~~~~~~w~~~~~  546 (570)
T 3fmw_A          523 WAGSP--A-ATADELRASLARWFGPPA  546 (570)
T ss_dssp             EEECT--T-CCHHHHHHHHHHHHCCCC
T ss_pred             EecCC--C-CChHHHHHHHHHhcCCCC
Confidence            99862  2 234679999999999754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=4.7e-41  Score=369.29  Aligned_cols=353  Identities=22%  Similarity=0.196  Sum_probs=212.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc--eeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ--AHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~r--a~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ++|+||||||+||++|+.|+++|++|+||||++.+...++  ++.++++++++|+++ |+.+.+................
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQEC-LPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHH-SCHHHHHHHHHHCEEECCCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHc-CChHHHHHhhhhhcccCcceeE
Confidence            6899999999999999999999999999999998876644  577899999999999 9887765422111000000011


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                      ....+..+.......  .............+.|..|+++|.+.+.                      .+|+|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~R~~L~~~L~~~~~----------------------~~v~~~~~v~~~~  136 (412)
T 4hb9_A           81 YNERMRLLAVHGGIS--PMAGKIISEQRLSISRTELKEILNKGLA----------------------NTIQWNKTFVRYE  136 (412)
T ss_dssp             ECTTSCEEEC----------------CEEEEEHHHHHHHHHTTCT----------------------TTEECSCCEEEEE
T ss_pred             ecCCcceecccCCcc--ccccccccccceEeeHHHHHHHHHhhcc----------------------ceEEEEEEEEeee
Confidence            111222221111000  0000011223456889999998876532                      2799999999999


Q ss_pred             EcCC-eEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC-ccccccc-cCCCceE
Q 005134          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLL-NERPGML  278 (712)
Q Consensus       202 ~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~  278 (712)
                      +.++ +|++++.   +|+    +++|||||||||++|.||+++++...........+....... ....... .......
T Consensus       137 ~~~~~~v~v~~~---dG~----~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (412)
T 4hb9_A          137 HIENGGIKIFFA---DGS----HENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTP  209 (412)
T ss_dssp             ECTTSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCC
T ss_pred             EcCCCeEEEEEC---CCC----EEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCc
Confidence            8665 4666553   564    689999999999999999999876554322222222111110 0000000 0000001


Q ss_pred             EEEeecCCeEEEE---Eec---------CCCCeEEEEE---ecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcc-------
Q 005134          279 FFIFNTEAIGVLV---AHD---------LKEGEFILQV---PFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-------  336 (712)
Q Consensus       279 ~~~~~~~~~g~~~---~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~-------  336 (712)
                      ..++.......++   ..+         .....+...+   ..........+++.+...+.+++.+......+       
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~  289 (412)
T 4hb9_A          210 NSIVPKSPDWLFISMWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQS  289 (412)
T ss_dssp             EEECCSSSEEEEEEEEEEESCTTSCGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTS
T ss_pred             ceEeecCCCcceeeeeecCCceeEEEeccCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHhc
Confidence            1111111111100   000         0111222221   11111223445667777777666553211111       


Q ss_pred             eEEEeecceec-hhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCc-hhhHHHHHHhhh
Q 005134          337 DVIDIKPWVMH-AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP-ASILNTYETERK  414 (712)
Q Consensus       337 ~i~~~~~w~~~-~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~-~~lL~sY~~eRr  414 (712)
                      +.....+|... .....+|.  .|||+|+|||||.|+|++|||||+||+||++|+|+|+.++++... +.+|++|++||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R~  367 (412)
T 4hb9_A          290 DMENISPLHLRSMPHLLPWK--SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQMR  367 (412)
T ss_dssp             CTTCCEEEEEEECCCCCCCC--CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             ccceeccchhcccccccccc--ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            00112233322 22345676  599999999999999999999999999999999999999988765 889999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 005134          415 PIAEFNTALSVQNFRA  430 (712)
Q Consensus       415 p~a~~~~~~s~~~~~~  430 (712)
                      |+++.+++.|.++...
T Consensus       368 ~~~~~~~~~s~~~~~~  383 (412)
T 4hb9_A          368 AYANEIVGISLRSAQN  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999877653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=1.6e-37  Score=342.03  Aligned_cols=340  Identities=16%  Similarity=0.144  Sum_probs=223.7

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ++.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+...   +.
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~   95 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHL-GMGDIMETFGGPLRR---MA   95 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHT-TCHHHHHHHSCCCCE---EE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHC-CCHHHHHhhcCCCcc---eE
Confidence            35679999999999999999999999999999999998888889999999999999999 999999888766532   23


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +.....|+.+..++...   +.. ..+...+.++|..|++.|++.+.+  +                   +|+++++|++
T Consensus        96 ~~~~~~g~~~~~~~~~~---~~~-~~~~~~~~i~r~~l~~~L~~~~~~--~-------------------~i~~~~~v~~  150 (407)
T 3rp8_A           96 YRDFRSGENMTQFSLAP---LIE-RTGSRPCPVSRAELQREMLDYWGR--D-------------------SVQFGKRVTR  150 (407)
T ss_dssp             EEETTTCCEEEEEECHH---HHH-HHSSCCEEEEHHHHHHHHHHHHCG--G-------------------GEEESCCEEE
T ss_pred             EEECCCCCEeEEecchh---hhh-hcCCceEEEEHHHHHHHHHHhCCc--C-------------------EEEECCEEEE
Confidence            33332366555443211   000 012234678999999999999876  4                   8999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc-CCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l-gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      +++++++|++++.   +|+    +++||+||+|||.+|.||+.+ +............+...+....   .  .......
T Consensus       151 i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~  218 (407)
T 3rp8_A          151 CEEDADGVTVWFT---DGS----SASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDE---A--LAPGDQW  218 (407)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCT---T--TCCTTEE
T ss_pred             EEecCCcEEEEEc---CCC----EEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEeccc---c--cCCCCce
Confidence            9999999877653   453    689999999999999999998 7642211110111111111111   0  1112223


Q ss_pred             EEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc----------ceEEEeecceech
Q 005134          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD----------IDVIDIKPWVMHA  348 (712)
Q Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~----------~~i~~~~~w~~~~  348 (712)
                      ..++.++...++++..  ++.+.+.+....+...  ..+++...+.+.+.+......          ..+.....+... 
T Consensus       219 ~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (407)
T 3rp8_A          219 TTFVGEGKQVSLMPVS--AGRFYFFFDVPLPAGL--AEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIE-  293 (407)
T ss_dssp             EEEEETTEEEEEEEET--TTEEEEEEEEECCTTC--SCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECC-
T ss_pred             EEEECCCcEEEEEEcC--CCeEEEEEEeCCCcCC--CCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecC-
Confidence            3334565555555554  3444443332222111  112222333444433221110          111111111111 


Q ss_pred             hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHH
Q 005134          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (712)
Q Consensus       349 ~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~  428 (712)
                       ..++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+..  + ..+.+|++|+++|++++..+++.+....
T Consensus       294 -~~~~~~--~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~--~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~  367 (407)
T 3rp8_A          294 -PFSRLV--RGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT--R-DIAAALREYEAQRCDRVRDLVLKARKRC  367 (407)
T ss_dssp             -CCSCCE--ETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcee--cCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             226776  499999999999999999999999999999999999842  3 5689999999999999999999887766


Q ss_pred             HHh
Q 005134          429 RAA  431 (712)
Q Consensus       429 ~~~  431 (712)
                      +.+
T Consensus       368 ~~~  370 (407)
T 3rp8_A          368 DIT  370 (407)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            544

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=4.8e-36  Score=330.52  Aligned_cols=345  Identities=21%  Similarity=0.251  Sum_probs=220.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .++||+||||||+||++|+.|+++|++ |+||||.+.+...+++..++++++++|+++ |+.+.+.+.+.+...   +.+
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~---~~~   78 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTHE---LRY   78 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEECE---EEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHC-CChHHHHhhCCCcce---EEE
Confidence            458999999999999999999999999 999999998877888999999999999999 999999887654422   222


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                       .+..|..+.........     ....+...+.|..|++.|.+.+.+ .|.                  ++|+++++|++
T Consensus        79 -~~~~g~~~~~~~~~~~~-----~~~~~~~~i~r~~l~~~L~~~~~~~~g~------------------~~v~~~~~v~~  134 (410)
T 3c96_A           79 -IDQSGATVWSEPRGVEA-----GNAYPQYSIHRGELQMILLAAVRERLGQ------------------QAVRTGLGVER  134 (410)
T ss_dssp             -ECTTSCEEEEEECGGGG-----TCSSCEEEEEHHHHHHHHHHHHHHHHCT------------------TSEEESEEEEE
T ss_pred             -EcCCCCEEeeccCCccc-----cCCCCeeeeeHHHHHHHHHHHHHhhCCC------------------cEEEECCEEEE
Confidence             22345544322110000     011223578899999999999876 353                  38999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +++ +++|++++.+..+|+  +.+++||+||+|||++|.||+.++..... ..+.....+.... ....+    .....+
T Consensus       135 i~~-~~~v~v~~~~~~~g~--~~~~~ad~vV~AdG~~S~vR~~l~~~~~~-~~~~g~~~~~~~~-~~~~~----~~~~~~  205 (410)
T 3c96_A          135 IEE-RDGRVLIGARDGHGK--PQALGADVLVGADGIHSAVRAHLHPDQRP-LSHGGITMWRGVT-EFDRF----LDGKTM  205 (410)
T ss_dssp             EEE-ETTEEEEEEEETTSC--EEEEEESEEEECCCTTCHHHHHHCTTCCC-CEEEEEEEEEEEE-EESCC----TTSSEE
T ss_pred             Eec-CCccEEEEecCCCCC--ceEEecCEEEECCCccchhHHHhcCCCCC-CCcCCeeEEEeec-ccccc----cCCCeE
Confidence            999 778888776322353  35799999999999999999999754321 1111111111111 01111    112223


Q ss_pred             EEeec--CCeEEEEEecC-----CCCe--EEEEEecCC--CCCCCCCCCH-HHHHHHHHHHhCCCCC--cc-eE----EE
Q 005134          280 FIFNT--EAIGVLVAHDL-----KEGE--FILQVPFYP--PQQNLEDFSP-EICEKLIFKLVGWELS--DI-DV----ID  340 (712)
Q Consensus       280 ~~~~~--~~~g~~~~~~~-----~~~~--~~~~~~~~~--~~~~~~~~~~-e~~~~~i~~~~g~~~~--~~-~i----~~  340 (712)
                      +++++  ....++++...     +...  |++..+...  .......+.. ....++++.+-++...  .+ ++    ..
T Consensus       206 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~  285 (410)
T 3c96_A          206 IVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQL  285 (410)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHHHHTCSE
T ss_pred             EEecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHHHhcCcc
Confidence            33332  33334444321     1112  322222110  0011112211 1112233333222111  00 00    11


Q ss_pred             eecceech-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHH
Q 005134          341 IKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF  419 (712)
Q Consensus       341 ~~~w~~~~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~  419 (712)
                      ...|++.. ..+++|.  .|||+|+|||||.|+|++|||+|+||+||.+|+|+|+..   ...+.+|++|+++|++++..
T Consensus       286 ~~~~~~~~~~~~~~~~--~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~~~L~~Ye~~r~~~~~~  360 (410)
T 3c96_A          286 ILQYPMVDRDPLPHWG--RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---ADVAAALREYEEARRPTANK  360 (410)
T ss_dssp             EEEEEEEECCCCSCCC--BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHH
T ss_pred             cceeecccCCCccccc--cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHH
Confidence            22344322 2356786  499999999999999999999999999999999999863   24678999999999999999


Q ss_pred             HHHHHHHHH
Q 005134          420 NTALSVQNF  428 (712)
Q Consensus       420 ~~~~s~~~~  428 (712)
                      ++..+.+.+
T Consensus       361 ~~~~s~~~~  369 (410)
T 3c96_A          361 IILANRERE  369 (410)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhHHHH
Confidence            988877443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=1.5e-36  Score=332.49  Aligned_cols=338  Identities=19%  Similarity=0.261  Sum_probs=222.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+  ....++..++++++++|+++ |+.+.+.+.+.+...   +.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~   77 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEG---VEI   77 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESC---EEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHc-CCcHHHHhcCCccce---EEE
Confidence            489999999999999999999999999999998753  23456667999999999999 999998876654322   111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ..  .+.. ..++      +.....+.....++|..+.+.|.+.+.+.|+                   +|+++++|+++
T Consensus        78 ~~--~~~~-~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~i~~~~~v~~i  129 (394)
T 1k0i_A           78 AF--AGQR-RRID------LKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVRL  129 (394)
T ss_dssp             EE--TTEE-EEEC------HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEEE
T ss_pred             EE--CCce-EEec------cccccCCCceEEechHHHHHHHHHHHHhcCC-------------------eEEeceeEEEE
Confidence            11  1211 1111      1100112234567889999999999888776                   99999999999


Q ss_pred             EEcC-CeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeec--CccccccccCCCce
Q 005134          201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS--KDLGDYLLNERPGM  277 (712)
Q Consensus       201 ~~~~-~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~--~~l~~~~~~~~~~~  277 (712)
                      ++++ +++++++.  ++|+  +.+++||+||+|||.+|.||+.+++...  ..+.......+..  .+..    ...+..
T Consensus       130 ~~~~~~~~~v~~~--~~g~--~~~~~a~~vV~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~  199 (394)
T 1k0i_A          130 HDLQGERPYVTFE--RDGE--RLRLDCDYIAGCDGFHGISRQSIPAERL--KVFERVYPFGWLGLLADTP----PVSHEL  199 (394)
T ss_dssp             ECTTSSSCEEEEE--ETTE--EEEEECSEEEECCCTTCSTGGGSCGGGC--EEEEEEEEEEEEEEEESSC----CSCSSC
T ss_pred             EEecCCceEEEEe--cCCc--EEEEEeCEEEECCCCCcHHHHhcCcccc--ccccccccceeEEEecCCC----CCccce
Confidence            9864 56777763  2453  3479999999999999999999976521  1111111111110  0110    111222


Q ss_pred             EEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCC----CCcceEEEeecceechhhhcc
Q 005134          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE----LSDIDVIDIKPWVMHAEVAEK  353 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~----~~~~~i~~~~~w~~~~~va~~  353 (712)
                       ++...++...++...+.....|.+..+  + ......++++...+.+.+.++..    ...........|++....+++
T Consensus       200 -~~~~~~~g~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (394)
T 1k0i_A          200 -IYANHPRGFALCSQRSATRSQYYVQVP--L-SEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEP  275 (394)
T ss_dssp             -EEECCTTCCEEEEEEETTEEEEEEEEC--T-TCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEEEEEEEEEEEEEEC
T ss_pred             -EEEEcCCceEEEEecCCCcEEEEEEeC--C-CCCccccCHHHHHHHHHHhhCcccccccccCcceeeEEEEhhhhhccc
Confidence             222334434443333322123333332  2 22233456665555555544321    111122222334455556777


Q ss_pred             ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      |.  .|||+|+|||||.|+|++|||+|+||+||.+|+|+|+..+++. .+.+|++|+++|++++..+++.+..+..
T Consensus       276 ~~--~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~-~~~~L~~Y~~~r~~~~~~~~~~s~~~~~  348 (394)
T 1k0i_A          276 MQ--HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG-RGELLERYSAICLRRIWKAERFSWWMTS  348 (394)
T ss_dssp             SE--ETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC-CGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--cCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77  4999999999999999999999999999999999999887543 4789999999999999988887765443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.8e-37  Score=335.95  Aligned_cols=341  Identities=19%  Similarity=0.221  Sum_probs=232.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++...+.+...   +.+
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~---~~~   79 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEVTRRGGRVRH---ELE   79 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHT-TCHHHHHHTTCEEEC---EEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHc-CcHHHHHHhCCCcce---eEE
Confidence            4468999999999999999999999999999999988877889999999999999999 999998876654422   111


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                       ....|..+..++....      ..+.....++|..|.+.|.+.+.+. |+                   +|+++++|++
T Consensus        80 -~~~~g~~~~~~~~~~~------~~~~~~~~~~r~~l~~~L~~~~~~~~gv-------------------~i~~~~~v~~  133 (399)
T 2x3n_A           80 -VYHDGELLRYFNYSSV------DARGYFILMPCESLRRLVLEKIDGEATV-------------------EMLFETRIEA  133 (399)
T ss_dssp             -EEETTEEEEEEETTSS------CGGGCEEECCHHHHHHHHHHHHTTCTTE-------------------EEECSCCEEE
T ss_pred             -EeCCCCEEEecchHHh------cccCccccccHHHHHHHHHHHhhhcCCc-------------------EEEcCCEEEE
Confidence             1223433332221110      0122235789999999999999887 65                   9999999999


Q ss_pred             EEEcCCeE--EEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccc--cccccEEEEEeecCccccccccCCC
Q 005134          200 VSATDQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       200 v~~~~~~v--~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      ++++++++  ++++.   +|+    ++++|+||+|||.+|.||+.+|++....  .....+..+.+... .. .  ... 
T Consensus       134 i~~~~~~v~g~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~-~~-~--~~~-  201 (399)
T 2x3n_A          134 VQRDERHAIDQVRLN---DGR----VLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAP-CV-A--ERN-  201 (399)
T ss_dssp             EEECTTSCEEEEEET---TSC----EEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCH-HH-H--HCE-
T ss_pred             EEEcCCceEEEEEEC---CCC----EEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEec-CC-C--CCc-
Confidence            99998887  66553   453    6899999999999999999998876543  22220022222111 10 0  111 


Q ss_pred             ceEEEEeec-CCeEEEEEecCCCCeEEEEEecCCCC-CCC-CCCCHHHHHHHHHHHhCCCC--CcceEEE---eecceec
Q 005134          276 GMLFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQ-QNL-EDFSPEICEKLIFKLVGWEL--SDIDVID---IKPWVMH  347 (712)
Q Consensus       276 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~e~~~~~i~~~~g~~~--~~~~i~~---~~~w~~~  347 (712)
                        . ..+.+ +...++++.+.  +.+.+.+.+.+.. ... ...+.+.+.+.++. ++...  ..++...   ...|++.
T Consensus       202 --~-~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  275 (399)
T 2x3n_A          202 --R-LYVDSQGGLAYFYPIGF--DRARLVVSFPREEARELMADTRGESLRRRLQR-FVGDESAEAIAAVTGTSRFKGIPI  275 (399)
T ss_dssp             --E-EEECTTSCEEEEEEETT--TEEEEEEECCHHHHHHHHHSTTSHHHHHHHHT-TCCGGGHHHHHTCCCSTTCEECCC
T ss_pred             --c-EEEcCCCcEEEEEEcCC--CEEEEEEEeCccccccccccCCHHHHHHHHhh-cCCcchhhHHhcCCccceEEechh
Confidence              2 34456 55555555543  5566554221110 000 01234455555553 22221  1122111   2345555


Q ss_pred             h-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          348 A-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       348 ~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                      . ..+++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+..++ +...+.+|++|+++|++++..+++.+.
T Consensus       276 ~~~~~~~~~--~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~  353 (399)
T 2x3n_A          276 GYLNLDRYW--ADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGH  353 (399)
T ss_dssp             CCEECSCSE--ETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccc--cCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhccHHHHHHHHHH
Confidence            5 5677887  49999999999999999999999999999999999999876 444588999999999999999998886


Q ss_pred             HHHHHh
Q 005134          426 QNFRAA  431 (712)
Q Consensus       426 ~~~~~~  431 (712)
                      .+.+.+
T Consensus       354 ~~~~~~  359 (399)
T 2x3n_A          354 ALATSL  359 (399)
T ss_dssp             HHHHHT
T ss_pred             Hhhhhh
Confidence            655443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=1.4e-36  Score=333.32  Aligned_cols=335  Identities=16%  Similarity=0.161  Sum_probs=214.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+ ...+++..++++++++|+++ |+.+  ...+.+..   .+.
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~-g~~~--~~~~~~~~---~~~   76 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVEL--DSISVPSS---SME   76 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCG--GGTCBCCC---EEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHc-CCcc--cccccccc---ceE
Confidence            45689999999999999999999999999999999875 44567888999999999999 8876  33333322   222


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +.....|..+.....           +  ...+.+..|.+.|.+.+.  ++                   +|+++++|++
T Consensus        77 ~~~~~~g~~~~~~~~-----------~--~~~~~~~~l~~~L~~~~~--~~-------------------~i~~~~~v~~  122 (397)
T 2vou_A           77 YVDALTGERVGSVPA-----------D--WRFTSYDSIYGGLYELFG--PE-------------------RYHTSKCLVG  122 (397)
T ss_dssp             EEETTTCCEEEEEEC-----------C--CCEEEHHHHHHHHHHHHC--ST-------------------TEETTCCEEE
T ss_pred             EEecCCCCccccccC-----------c--ccccCHHHHHHHHHHhCC--Cc-------------------EEEcCCEEEE
Confidence            222224544432211           1  123567788888888752  33                   8999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeec--CccccccccCCCce
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS--KDLGDYLLNERPGM  277 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~--~~l~~~~~~~~~~~  277 (712)
                      ++++++++++++.   +|+    ++++|+||+|||.+|.||+.++ +..  ..+.....+....  .++...........
T Consensus       123 i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (397)
T 2vou_A          123 LSQDSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLL-GIE--PTYAGYVTWRGVLQPGEVADDVWNYFNDK  192 (397)
T ss_dssp             EEECSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHH-CCC--CEEEEEEEEEEEECTTSSCHHHHHHHTTE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEECCCcchhHHHHhc-cCC--CCccceEEEEEEeeccccChhhhhhhcCc
Confidence            9999998877653   453    6899999999999999999998 542  2222222211111  11111000000012


Q ss_pred             EEEEeecCCeEEEEEecCCCC------eEEEEEecCCCC--CC----C-----------CCCCHHHHHHHHHHHhC-CCC
Q 005134          278 LFFIFNTEAIGVLVAHDLKEG------EFILQVPFYPPQ--QN----L-----------EDFSPEICEKLIFKLVG-WEL  333 (712)
Q Consensus       278 ~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~--~~----~-----------~~~~~e~~~~~i~~~~g-~~~  333 (712)
                      ..+...++...++++.+...+      .|++..+.....  ..    .           ...+++...++++.+.. +.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (397)
T 2vou_A          193 FTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP  272 (397)
T ss_dssp             EEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH
T ss_pred             eeEEecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH
Confidence            223334444334444443222      244444422100  00    0           00134444444443321 111


Q ss_pred             CcceEE----EeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 005134          334 SDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY  409 (712)
Q Consensus       334 ~~~~i~----~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY  409 (712)
                       -.+++    ....|++....+++|.  .|||+|+|||||.|+|++|||+|+||+||.+|+++|..   +.+.+.+|++|
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~~~~~~L~~Y  346 (397)
T 2vou_A          273 -FRDLVLNASSPFVTVVADATVDRMV--HGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSW  346 (397)
T ss_dssp             -HHHHHHHCSSCEEEEEEEBCCSCSE--ETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHH
T ss_pred             -HHHHHhccCCcceeeeeeecCCcee--cCcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence             00111    1113445555677887  49999999999999999999999999999999999974   33457899999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHh
Q 005134          410 ETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       410 ~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      +++|+|++..+++.|..+.+.+
T Consensus       347 e~~R~~~~~~~~~~s~~~~~~~  368 (397)
T 2vou_A          347 ETRQLQQGHAYLNKVKKMASRL  368 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887765544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=3.5e-35  Score=322.37  Aligned_cols=341  Identities=18%  Similarity=0.220  Sum_probs=212.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ceeecCH-hHHHHHHhhhcHHHHHHhcCCCccccce
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINN-RYALVFRKLDGLAEEIERSQPPVDLWRK  117 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~--ra~~i~~-rtmeilr~l~Gl~d~l~~~~~~~~~~~~  117 (712)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+...+  .+..+.+ .++++|+++ |+.+++...+.+...   
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~---   99 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLLQTYYDLALPMGV---   99 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHT-TCHHHHHHHCBCCCE---
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhc-ChHHHHHHhhcccce---
Confidence            456899999999999999999999999999999998765433  3444554 579999999 999999877654422   


Q ss_pred             eEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEE
Q 005134          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (712)
Q Consensus       118 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v  197 (712)
                       .+ ....|..+....  .+.     ........+.|..|++.|.+.+.+                     ++|+++++|
T Consensus       100 -~~-~~~~g~~~~~~~--~~~-----~~~~~~~~i~r~~l~~~L~~~~~~---------------------~~i~~~~~v  149 (398)
T 2xdo_A          100 -NI-ADEKGNILSTKN--VKP-----ENRFDNPEINRNDLRAILLNSLEN---------------------DTVIWDRKL  149 (398)
T ss_dssp             -EE-ECSSSEEEEECC--CGG-----GTTSSCCEECHHHHHHHHHHTSCT---------------------TSEEESCCE
T ss_pred             -EE-ECCCCCchhhcc--ccc-----cCCCCCceECHHHHHHHHHhhcCC---------------------CEEEECCEE
Confidence             11 223344332210  000     001112357899999999887543                     278999999


Q ss_pred             EEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEE--EEeecCcc--ccccccC
Q 005134          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVS--VHFLSKDL--GDYLLNE  273 (712)
Q Consensus       198 ~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~--~~~~~~~l--~~~~~~~  273 (712)
                      ++++++++++++++.   +|+    ++++|+||+|||.+|.||+.++...   ..+.....  ..+...+.  ..+....
T Consensus       150 ~~i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vR~~l~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~  219 (398)
T 2xdo_A          150 VMLEPGKKKWTLTFE---NKP----SETADLVILANGGMSKVRKFVTDTE---VEETGTFNIQADIHQPEINCPGFFQLC  219 (398)
T ss_dssp             EEEEECSSSEEEEET---TSC----CEEESEEEECSCTTCSCCTTTCCCC---CEEEEEEEEEEEESSHHHHSHHHHHHH
T ss_pred             EEEEECCCEEEEEEC---CCc----EEecCEEEECCCcchhHHhhccCCC---ceEcceEEEEEEeCchhccCchhHhhc
Confidence            999999888776653   453    5899999999999999999986421   11111111  11111010  0000000


Q ss_pred             CCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCCCC-----CCCCCHHHHHHHHHHHhCCCCCcc-eEE----Eeec
Q 005134          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-----LEDFSPEICEKLIFKLVGWELSDI-DVI----DIKP  343 (712)
Q Consensus       274 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~i~~~~g~~~~~~-~i~----~~~~  343 (712)
                      ..+. ++.+.++...+..+.+  ++.+.+.+.+..+...     ....+++...+.+.+.++.-...+ +++    ....
T Consensus       220 ~~g~-~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (398)
T 2xdo_A          220 NGNR-LMASHQGNLLFANPNN--NGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVG  296 (398)
T ss_dssp             TTSE-EEEEETTEEEEEEEEE--TTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHCSCCEE
T ss_pred             CCce-EEEecCCCeEEEEeCC--CCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHHHHHhCccccee
Confidence            1222 3344554333333332  3444443322222111     111244555555555443210010 000    1112


Q ss_pred             ceech-hhhccccccCC--cEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC-chhhHHHHHHhhhHHHHH
Q 005134          344 WVMHA-EVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEF  419 (712)
Q Consensus       344 w~~~~-~va~~~~~~~g--RV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a-~~~lL~sY~~eRrp~a~~  419 (712)
                      |.... ....+|.. .+  ||+|+|||||.|+|++|||+|+||+||.+|+|+|+..  +.. .+.+|++|+++|++++..
T Consensus       297 ~~~~~~~~~~~~~~-~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~r~~~~~~  373 (398)
T 2xdo_A          297 LATRIFPLEKPWKS-KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG--KFNSIEEAVKNYEQQMFIYGKE  373 (398)
T ss_dssp             EEEEECCCCSCCCS-CCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC--CSSSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEeccCCCCccc-CCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHHHHHH
Confidence            22221 12345642 25  9999999999999999999999999999999999864  222 478999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 005134          420 NTALSVQNFRAA  431 (712)
Q Consensus       420 ~~~~s~~~~~~~  431 (712)
                      ++..+..+...+
T Consensus       374 ~~~~s~~~~~~~  385 (398)
T 2xdo_A          374 AQEESTQNEIEM  385 (398)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888776554

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.7e-32  Score=298.99  Aligned_cols=329  Identities=13%  Similarity=0.093  Sum_probs=200.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~-~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      |+++||+||||||+||++|+.|+++|++|+||||++.+. ...++..|+++.+   +.+ |+.........+   .....
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l---~~l-~~~~~~~~~~~~---~~~~~   74 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGIL---NEA-DIKADRSFIANE---VKGAR   74 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHH---HHT-TCCCCTTTEEEE---ESEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHH---HHc-CCCchhhhhhcc---cceEE
Confidence            567999999999999999999999999999999988763 3445777877654   444 442111111000   11111


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      . ....+.........       ...+...+.+.|..|++.|.+.+.+.|+                   ++++++++++
T Consensus        75 ~-~~~~~~~~~~~~~~-------~~~~~~~~~i~R~~~~~~L~~~a~~~G~-------------------~~~~~~~v~~  127 (397)
T 3oz2_A           75 I-YGPSEKRPIILQSE-------KAGNEVGYVLERDKFDKHLAALAAKAGA-------------------DVWVKSPALG  127 (397)
T ss_dssp             E-ECTTCSSCEEEECS-------SSSCCCEEEECHHHHHHHHHHHHHHHTC-------------------EEESSCCEEE
T ss_pred             E-EeCCCceEeecccc-------ccCCceeEEEEHHHHHHHHHHHHHhcCc-------------------EEeeeeeeee
Confidence            1 11122211111100       0112234578999999999999999887                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +.++++.++..... .+++  ..+++||+||+|||++|.||+.+|+.............+.+.....     ...+....
T Consensus       128 ~~~~~~~~~~v~~~-~~~~--~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  199 (397)
T 3oz2_A          128 VIKENGKVAGAKIR-HNNE--IVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINV-----DVDPDYTD  199 (397)
T ss_dssp             EEEETTEEEEEEEE-ETTE--EEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESC-----CCCTTEEE
T ss_pred             eeeccceeeeeeec-cccc--ceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeecc-----ccCcccce
Confidence            99998887654432 2332  4689999999999999999999998765443333333333322111     11122222


Q ss_pred             EEee---cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCC--CcceEEEe-ecceechhhhcc
Q 005134          280 FIFN---TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL--SDIDVIDI-KPWVMHAEVAEK  353 (712)
Q Consensus       280 ~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~--~~~~i~~~-~~w~~~~~va~~  353 (712)
                      +.+.   +....++.+..  ++.+.+.+......    ........+.+.+++...+  ...+.... ..+........+
T Consensus       200 ~~~~~~~~~g~~~~~~~~--~~~~~vg~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  273 (397)
T 3oz2_A          200 FYLGSIAPAGYIWVFPKG--EGMANVGIGSSINW----IHNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMP  273 (397)
T ss_dssp             EECSTTSTTEEEEEEEEE--TTEEEEEEEEETTT----SCSHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSC
T ss_pred             eeeeccCCCceEEEeecc--cceeEEEEeeccch----hhhhhhHHHHHHHHHHhCccccccceeeeeeccccccCcccc
Confidence            2222   22233334333  23443332211111    1122333344444332211  11111111 111122233345


Q ss_pred             ccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH-cCCCchhhHHHHHHhhhHHHHH
Q 005134          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKPIAEF  419 (712)
Q Consensus       354 ~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl-~g~a~~~lL~sY~~eRrp~a~~  419 (712)
                      +.  .+||+|+|||||.++|++|||+|+||+||..||+.|+..+ .+...+.+|+.|+++++..-..
T Consensus       274 ~~--~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~~  338 (397)
T 3oz2_A          274 IT--MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFER  338 (397)
T ss_dssp             CE--ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred             ee--eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence            55  4899999999999999999999999999999999999877 4566789999999988876543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=2.7e-33  Score=305.27  Aligned_cols=323  Identities=16%  Similarity=0.192  Sum_probs=211.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      |..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++...+.+...   +.+
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~---~~~   84 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGL-GALDDVLQGSHTPPT---YET   84 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHT-TCHHHHHTTCBCCSC---EEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHc-CCHHHHHhhCCCccc---eEE
Confidence            3468999999999999999999999999999999998877889999999999999999 999999887655432   223


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      ...  |..+...+..          ......++|..|+..|.+.+.+.|+                   +|+++++|+++
T Consensus        85 ~~~--g~~~~~~~~~----------~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~i  133 (379)
T 3alj_A           85 WMH--NKSVSKETFN----------GLPWRIMTRSHLHDALVNRARALGV-------------------DISVNSEAVAA  133 (379)
T ss_dssp             EET--TEEEEEECGG----------GCCEEEEEHHHHHHHHHHHHHHTTC-------------------EEESSCCEEEE
T ss_pred             EeC--CceeeeccCC----------CCceEEECHHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEE
Confidence            222  4444332110          1124678999999999999998876                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccc-cccCCCceEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY-LLNERPGMLF  279 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  279 (712)
                      ++  ++ ++++.   +|+    ++++|+||+|||.+|.+|+.+++... . .+.....+.+..+ .... .....+...+
T Consensus       134 ~~--~~-~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~l~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  200 (379)
T 3alj_A          134 DP--VG-RLTLQ---TGE----VLEADLIVGADGVGSKVRDSIGFKQD-R-WVSKDGLIRLIVP-RMKKELGHGEWDNTI  200 (379)
T ss_dssp             ET--TT-EEEET---TSC----EEECSEEEECCCTTCHHHHHHCCCEE-E-EEEEEEEEEEEEE-CCHHHHCSSCTTSEE
T ss_pred             Ee--CC-EEEEC---CCC----EEEcCEEEECCCccHHHHHHhcCCCC-c-CcCCcEEEEEEec-hhhccCCcCCccccc
Confidence            88  34 55543   453    68999999999999999999986421 1 1111111111111 0000 0000011111


Q ss_pred             E---EeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCH--HHHH-------HHHHHHhCCCCCcceEEEeecceec
Q 005134          280 F---IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSP--EICE-------KLIFKLVGWELSDIDVIDIKPWVMH  347 (712)
Q Consensus       280 ~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~-------~~i~~~~g~~~~~~~i~~~~~w~~~  347 (712)
                      .   .+.++...++++.+  ++...+.+.+.......+.+.+  +.+.       +++...-..        ....|.+.
T Consensus       201 ~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~  270 (379)
T 3alj_A          201 DMWNFWPRVQRILYSPCN--ENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKL--------KTARYDKY  270 (379)
T ss_dssp             EEECCSSSCCEEEEEECS--SSEEEEEEEECTTCTTTTCSSCCHHHHHHHCGGGHHHHHHHHTC--------TTCCEEEE
T ss_pred             ccceEECCCCEEEEEECC--CCcEEEEEEecCCCCCHHHHHHHHhcCCchhccHHHHHhhCCcc--------ceEEeccc
Confidence            1   23454444444443  3443333222211110111110  1111       122221100        11223332


Q ss_pred             h-hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134          348 A-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ  426 (712)
Q Consensus       348 ~-~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~  426 (712)
                      . ..+++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.   ....+.+|++|+++|++++..+++.+..
T Consensus       271 ~~~~~~~~~--~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~---~~~~~~~l~~Y~~~r~~~~~~~~~~s~~  345 (379)
T 3alj_A          271 ETTKLDSWT--RGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE---GSSVEDALVAWETRIRPITDRCQALSGD  345 (379)
T ss_dssp             EEEEESCSE--ETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCcc--cCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2 2356776  49999999999999999999999999999999999974   2234789999999999999999988843

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=2.2e-31  Score=301.67  Aligned_cols=348  Identities=15%  Similarity=0.140  Sum_probs=219.0

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHH-HHHhhhcHHHHHHhcCCCcccccee
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEEIERSQPPVDLWRKF  118 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtme-ilr~l~Gl~d~l~~~~~~~~~~~~~  118 (712)
                      .+.++||+||||||+||++|+.|+++|++|+||||.+.+... .+..+.+.++. +++.+ |+.+.+...+.+......+
T Consensus         4 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~g~~~~~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~   81 (512)
T 3e1t_A            4 RPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-IGESLLPATVHGICAML-GLTDEMKRAGFPIKRGGTF   81 (512)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC-SCCBCCHHHHTTHHHHT-TCHHHHHTTTCCEECEEEE
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC-CCcccCcchHHHHHHHh-CcHHHHHHcCCccccCceE
Confidence            356799999999999999999999999999999999865443 35566777664 89998 9999998877654332222


Q ss_pred             EeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE
Q 005134          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (712)
Q Consensus       119 ~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~  198 (712)
                      .+..  ...... +......    .......+++++..|.+.|.+.+.+.|+                   +|+++++|+
T Consensus        82 ~~~~--~~~~~~-~~~~~~~----~~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~~~~V~  135 (512)
T 3e1t_A           82 RWGK--EPEPWT-FGFTRHP----DDPYGFAYQVERARFDDMLLRNSERKGV-------------------DVRERHEVI  135 (512)
T ss_dssp             ECSS--CSSCEE-EESSSSS----SSTTCCEEBCCHHHHHHHHHHHHHHTTC-------------------EEESSCEEE
T ss_pred             EecC--Cccccc-cccccCC----CCCcceeeEecHHHHHHHHHHHHHhCCC-------------------EEEcCCEEE
Confidence            2111  111100 1110000    0112234678999999999999998887                   999999999


Q ss_pred             EEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecC-ccccccccCCCc
Q 005134          199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPG  276 (712)
Q Consensus       199 ~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~  276 (712)
                      +++.+++.++ +++.+ .+|+  +.+++||+||+|||.+|.+|+++|+...........+...+... .+.    .....
T Consensus       136 ~v~~~~~~v~gv~~~~-~dG~--~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~  208 (512)
T 3e1t_A          136 DVLFEGERAVGVRYRN-TEGV--ELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLP----APRQG  208 (512)
T ss_dssp             EEEEETTEEEEEEEEC-SSSC--EEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCS----TTCTT
T ss_pred             EEEEECCEEEEEEEEe-CCCC--EEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCC----CCCcC
Confidence            9999888765 55553 2343  35899999999999999999999765432222122222223211 111    11122


Q ss_pred             eEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHH------HHhCCCC-------CcceEEEee
Q 005134          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIF------KLVGWEL-------SDIDVIDIK  342 (712)
Q Consensus       277 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~------~~~g~~~-------~~~~i~~~~  342 (712)
                      ..+..+.+.+..++++..  ++.+.+.+.+.... .......++.+.+++.      +.+....       ..+.+.  .
T Consensus       209 ~~~~~~~~~G~~~~~Pl~--~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~~~~~~~~~i~~~--~  284 (512)
T 3e1t_A          209 NILSAAFQDGWFWYIPLS--DTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIR--K  284 (512)
T ss_dssp             SEEEEEETTEEEEEEECS--SSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTTCEECCSSTTSSCEEE--E
T ss_pred             ceEEEEeCCceEEEEEeC--CCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHhcCccccccccccceee--c
Confidence            233334444444444443  33333322211110 1111112333333332      2222110       001110  1


Q ss_pred             cceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC-chhhHHHHHHhhhHHHHHHH
Q 005134          343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNT  421 (712)
Q Consensus       343 ~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a-~~~lL~sY~~eRrp~a~~~~  421 (712)
                      .|.   ....+|.  .+||+|+|||||.++|+.|||+|+||+||..|+++|...+++.. .+.+|+.|+++|++....+.
T Consensus       285 ~~~---~~~~~~~--~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~~~~~  359 (512)
T 3e1t_A          285 DYS---YCNTSFW--KNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFY  359 (512)
T ss_dssp             SCC---EEESCSB--CSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc---ccccccc--cCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence            111   1344555  48999999999999999999999999999999999999887653 35789999999999999888


Q ss_pred             HHHHHHHHHh
Q 005134          422 ALSVQNFRAA  431 (712)
Q Consensus       422 ~~s~~~~~~~  431 (712)
                      +.....|...
T Consensus       360 ~~~~~~y~~~  369 (512)
T 3e1t_A          360 QFLVAFYDMN  369 (512)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhh
Confidence            8777665543

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=5.4e-33  Score=303.19  Aligned_cols=319  Identities=13%  Similarity=0.085  Sum_probs=200.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHH-HH-HHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLA-EE-IERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~-d~-l~~~~~~~~~~~~~~  119 (712)
                      +||+||||||+||++|+.|+++  |++|+||||.+.+...+++..+++++++.+... ++. +. +.....+.   ....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~   76 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANP-LSYLDAPERLNPQFL---EDFK   76 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCG-GGGSSCGGGGCCEEE---CCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCc-chhhhhhHHHhhccc---cceE
Confidence            4799999999999999999999  999999999998877888999998887733332 443 33 32222111   1122


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +..  .|..+..            ........+.|..|.+.|.+.+.+.|+                   +++++++|++
T Consensus        77 ~~~--~g~~~~~------------~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~  123 (381)
T 3c4a_A           77 LVH--HNEPSLM------------STGVLLCGVERRGLVHALRDKCRSQGI-------------------AIRFESPLLE  123 (381)
T ss_dssp             EEE--SSSEEEC------------CCCSCEEEEEHHHHHHHHHHHHHHTTC-------------------EEETTCCCCS
T ss_pred             EEe--CCeeEEe------------cCCCceeeecHHHHHHHHHHHHHHCCC-------------------EEEeCCEecc
Confidence            221  2333210            001123468899999999999998877                   8999999988


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhccc----CCCcccccccccEEEEEeecCccccccccCCC
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV----GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~l----gi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      +++..                  ++++|+||+|||.+|. |+.+    ++...+..   ..  ..+......    . ..
T Consensus       124 i~~~~------------------~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~---~~--~~~~~~~~~----~-~~  174 (381)
T 3c4a_A          124 HGELP------------------LADYDLVVLANGVNHK-TAHFTEALVPQVDYGR---NK--YIWYGTSQL----F-DQ  174 (381)
T ss_dssp             GGGCC------------------GGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEE---EE--EEEEEESSC----C-SS
T ss_pred             chhcc------------------cccCCEEEECCCCCch-HHhhhhhcCCCcccCC---cc--EEEEecCCC----C-Cc
Confidence            75420                  1369999999999999 9987    33322110   11  111110000    0 11


Q ss_pred             ceEEEEeecCCeEEEEEecCCCCeEEEEEecCCCC---CCCCCCCHHHHHHHHHHHhCCCCCcceEEEee--cceec-hh
Q 005134          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEICEKLIFKLVGWELSDIDVIDIK--PWVMH-AE  349 (712)
Q Consensus       276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~--~w~~~-~~  349 (712)
                      ...++.+.+.+..++...+..++.+.+.+...+..   .....++++...+.+++.++......+++...  .|... ..
T Consensus       175 ~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  254 (381)
T 3c4a_A          175 MNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTL  254 (381)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTTCCCBCCTTTCSEEEEEC
T ss_pred             ceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCCchhhcCCCcceeeeccc
Confidence            11122222322222112233334444333321110   12334565555555555443111112222211  35543 34


Q ss_pred             hhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       350 va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      .+++|.  .|||+|+|||||.|+|++|||+|+||+||.+|+|+|+..   ...+.+|++|+++|++++..++..+..+.+
T Consensus       255 ~~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~---~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~  329 (381)
T 3c4a_A          255 SHDRCH--DGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE---DGVPAALKRFEERALPLVQLFRGHADNSRV  329 (381)
T ss_dssp             CCSCSE--ETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcc--cCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            567887  499999999999999999999999999999999999873   345789999999999999999998877766


Q ss_pred             Hhcc
Q 005134          430 AAME  433 (712)
Q Consensus       430 ~~~~  433 (712)
                      .+..
T Consensus       330 ~~~~  333 (381)
T 3c4a_A          330 WFET  333 (381)
T ss_dssp             HHHT
T ss_pred             hhhc
Confidence            5544

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.98  E-value=9.8e-31  Score=291.92  Aligned_cols=332  Identities=14%  Similarity=0.076  Sum_probs=206.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~--~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+.  ...++..+   ++++|+++ |+.+.+...  ....+....
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~l-g~~~~~~~~--~~~~~~~~~   78 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKL-GMPYPKGEE--LENKINGIK   78 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHT-TCCCCCGGG--EEEEEEEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHh-cCCCCchHH--HHhhhcceE
Confidence            46899999999999999999999999999999997642  23345455   45777777 654321110  000001111


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                      +. ...+...          +   ..+.....++|..|.+.|.+.+.+.|+                   +++++++|++
T Consensus        79 ~~-~~~~~~~----------~---~~~~~~~~i~r~~l~~~L~~~a~~~gv-------------------~i~~~~~v~~  125 (453)
T 3atr_A           79 LY-SPDMQTV----------W---TVNGEGFELNAPLYNQRVLKEAQDRGV-------------------EIWDLTTAMK  125 (453)
T ss_dssp             EE-CTTSSCE----------E---EEEEEEEEECHHHHHHHHHHHHHHTTC-------------------EEESSEEEEE
T ss_pred             EE-CCCCceE----------E---eECCCcEEEcHHHHHHHHHHHHHHcCC-------------------EEEeCcEEEE
Confidence            11 1111100          0   001224578999999999999998876                   9999999999


Q ss_pred             EEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCccc--cccc---ccEEEEEeecCccccccccC
Q 005134          200 VSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG--EKDL---QKLVSVHFLSKDLGDYLLNE  273 (712)
Q Consensus       200 v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g--~~~~---~~~~~~~~~~~~l~~~~~~~  273 (712)
                      ++++++.++ |++....+|+  ..+++||+||+|||.+|.+|+.++.....  ....   ...+...+.....     ..
T Consensus       126 i~~~~~~v~gv~~~~~~~G~--~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  198 (453)
T 3atr_A          126 PIFEDGYVKGAVLFNRRTNE--ELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKED-----IE  198 (453)
T ss_dssp             EEEETTEEEEEEEEETTTTE--EEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSC-----CT
T ss_pred             EEEECCEEEEEEEEEcCCCc--eEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCC-----cc
Confidence            999888876 5665321342  35799999999999999999999876421  1111   1111111111110     01


Q ss_pred             CCceEEEEee----cCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecce-ech
Q 005134          274 RPGMLFFIFN----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWV-MHA  348 (712)
Q Consensus       274 ~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~-~~~  348 (712)
                      .+....++++    +++..++++...  +.+.+.+.+...... .+ ..+.+.+.+++... .....++.....+. ...
T Consensus       199 ~~~~~~~~~~~~~~~~g~~~~~P~~~--~~~~vg~~~~~~~~~-~~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~  273 (453)
T 3atr_A          199 DHDYLRIFIDQETSPGGYWWYFPKGK--NKVNVGLGIQGGMGY-PS-IHEYYKKYLDKYAP-DVDKSKLLVKGGALVPTR  273 (453)
T ss_dssp             TTTEEEEECCTTTSTTSCEEEEEEET--TEEEEEEEEESSSCC-CC-HHHHHHHHHHHHCT-TEEEEEEEEEEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcEEEEEECCC--CeEEEEEEecCCCCC-CC-HHHHHHHHHHhhhh-hcCCCeEEeccceeccCC
Confidence            1223223332    344455555542  344443322111111 11 23455556655322 11122333322222 223


Q ss_pred             hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHhhhHHHHHHHHHHHH
Q 005134          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSVQ  426 (712)
Q Consensus       349 ~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g~a~~~lL~sY~~eRrp~a~~~~~~s~~  426 (712)
                      ...++|.  .+||+|+|||||.++|+.|||+|+||+||.+||++|+..++ +...+.+|+.|+++|++.....+..+..
T Consensus       274 ~~~~~~~--~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~  350 (453)
T 3atr_A          274 RPLYTMA--WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDI  350 (453)
T ss_dssp             SCCSCSE--ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCcee--cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566776  49999999999999999999999999999999999998775 5445789999999999999877766543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.97  E-value=7.1e-31  Score=300.61  Aligned_cols=345  Identities=15%  Similarity=0.181  Sum_probs=219.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      |.++||+||||||+|+++|+.|+++|++|+||||.+.+.. ..+..+++.++++|+.+ |+.+.+...+........+.+
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~l-Gl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRL-GLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHT-TCHHHHHHHCCEEECEEEEEC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHc-CCcHHHHhcCCcccCCcEEEe
Confidence            5579999999999999999999999999999999976543 34788999999999999 999998877654322122221


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      .   .+............ ... ......+++++..|...|.+.+.+.|+                   +++++++|+++
T Consensus        99 ~---~~~~~~~~~~~~~~-~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~g~~V~~v  154 (591)
T 3i3l_A           99 G---QDQAPWTFSFAAPK-VAP-WVFDHAVQVKREEFDKLLLDEARSRGI-------------------TVHEETPVTDV  154 (591)
T ss_dssp             S---SSCCCEEEECCCC---CT-TCCSCEEECCHHHHHHHHHHHHHHTTC-------------------EEETTCCEEEE
T ss_pred             c---CCCccceeeccccc-ccc-cccCeeEEEcHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEE
Confidence            1   11111111111000 000 011224678999999999999998887                   99999999999


Q ss_pred             EEc-CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEE
Q 005134          201 SAT-DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (712)
Q Consensus       201 ~~~-~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (712)
                      +.+ ++.+.|++..  +|+  ..+++||+||+|||.+|.+|+.+++...........+...+.....   .........+
T Consensus       155 ~~~~g~~~~V~~~~--~G~--~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~---~~~~~~~~~~  227 (591)
T 3i3l_A          155 DLSDPDRVVLTVRR--GGE--SVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDP---FEGDLKGTTY  227 (591)
T ss_dssp             ECCSTTCEEEEEEE--TTE--EEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCS---CCSTTTTCEE
T ss_pred             EEcCCCEEEEEEec--CCc--eEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCcc---ccCCCCCceE
Confidence            876 5566666652  442  3579999999999999999999987643221111112222322110   0111222334


Q ss_pred             EEeecCCeEEEEEecCCCCeEEEEEecCCCCC-CCCCCCHHHHHHHHHHHhCCCC----------CcceEEEeecceech
Q 005134          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ-NLEDFSPEICEKLIFKLVGWEL----------SDIDVIDIKPWVMHA  348 (712)
Q Consensus       280 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~i~~~~g~~~----------~~~~i~~~~~w~~~~  348 (712)
                      ..+.+.+..++++..  ++.+.+.+...+... .....+.+   ++++++....+          ...+......|..  
T Consensus       228 ~~~~~~G~~w~iPl~--~~~~sv~~~~~~~~~~~l~~~~~~---~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~--  300 (591)
T 3i3l_A          228 SITFEDGWVWMIPIK--DDLYSVGLVVDRSKSAEVREQGAD---AFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWSY--  300 (591)
T ss_dssp             EEEETTEEEEEEECS--SSEEEEEEEEEGGGHHHHHHHCHH---HHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEEE--
T ss_pred             EEEcCCcEEEEEECC--CCeEEEEEEcCHHHHhhhccCCHH---HHHHHHHHhCHHHHHHHhcCccccCceEeccccc--
Confidence            444455444444443  344444332111100 00001112   22222221110          0000111122322  


Q ss_pred             hhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC-chhhHHHHHHhhhHHHHHHHHHHHHH
Q 005134          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQN  427 (712)
Q Consensus       349 ~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a-~~~lL~sY~~eRrp~a~~~~~~s~~~  427 (712)
                       .+.+|.  .+||+|+|||||.++|+.|||+|+|++||..|+++|...+.+.. .+.+++.|+++|++....+.+.....
T Consensus       301 -~~~~~~--~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~  377 (591)
T 3i3l_A          301 -DTEVFS--ADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASF  377 (591)
T ss_dssp             -EESCSE--ETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhhcc--cCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             345665  49999999999999999999999999999999999998876543 45689999999999999999888877


Q ss_pred             H
Q 005134          428 F  428 (712)
Q Consensus       428 ~  428 (712)
                      |
T Consensus       378 Y  378 (591)
T 3i3l_A          378 Y  378 (591)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.97  E-value=3.8e-30  Score=284.00  Aligned_cols=342  Identities=14%  Similarity=0.121  Sum_probs=215.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+. ...+..++++++++++.+ |+.+.+.+.+.+......+  
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~--   78 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEA-GFLDAVKAQGFQQKFGAKF--   78 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHT-TCHHHHHHTTCEEECEEEE--
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHc-CChHHHHHcCCcccCCcEE--
Confidence            456899999999999999999999999999999997655 356788999999999999 9999998876543221111  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      .   .+.....++.....  .  ..+...+.++|..|.+.|.+.+.+.|+                   +++++++|+++
T Consensus        79 ~---~~~~~~~~~~~~~~--~--~~~~~~~~~~r~~~~~~L~~~a~~~gv-------------------~i~~~~~v~~i  132 (421)
T 3nix_A           79 V---RGKEIADFNFSDQF--S--NGWNWTWQVPRGNFDKTLADEAARQGV-------------------DVEYEVGVTDI  132 (421)
T ss_dssp             E---ETTEEEEEETTSCS--S--CSCCCEEECCHHHHHHHHHHHHHHHTC-------------------EEECSEEEEEE
T ss_pred             E---eCCeeEEEeehhhc--C--CCCCceeEECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence            1   11222222211110  0  112234678999999999999998887                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEE
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (712)
                      +.+++++.+++... +|+  +++++||+||+|||.+|.+|+.+|++..........+...+......... .. ....++
T Consensus       133 ~~~~~~~~v~v~~~-~g~--~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~  207 (421)
T 3nix_A          133 KFFGTDSVTTIEDI-NGN--KREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAA-EM-EGNRIT  207 (421)
T ss_dssp             EEETTEEEEEEEET-TSC--EEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC------CCSEEE
T ss_pred             EEeCCEEEEEEEcC-CCC--EEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCcc-CC-CCeEEE
Confidence            99988887777643 443  45799999999999999999999987654433333343333321111000 11 112222


Q ss_pred             EeecCCeEEEEEecCCCCeEEEEEecCCCC-CCCCCCCHHHHHHHHHHHhCCC--CCcceE-EEeecceechhhhccccc
Q 005134          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE--LSDIDV-IDIKPWVMHAEVAEKFLC  356 (712)
Q Consensus       281 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~i~~~~g~~--~~~~~i-~~~~~w~~~~~va~~~~~  356 (712)
                      +......+++...+..++...+.+...+.. .....-.++.+.+++.......  ....+. .....|........++. 
T Consensus       208 ~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  286 (421)
T 3nix_A          208 AVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLY-  286 (421)
T ss_dssp             EEEEETTEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHHHHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSE-
T ss_pred             EEeCCCCEEEEEEEECCCCEEEEEEecHHHhhhcCCCHHHHHHHHHHhCcHHHHHHhcCccccCceeecccceeeeeec-
Confidence            221111233333333344444433221111 0111112222333332210000  000000 01122233333445565 


Q ss_pred             cCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHH
Q 005134          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN  420 (712)
Q Consensus       357 ~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~  420 (712)
                       .+|++|+|||||.++|+.|+|+|+|++||..|++.|+..+++. ....++.|+++++......
T Consensus       287 -~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~-~~~~~~~y~~~~~~~~~~~  348 (421)
T 3nix_A          287 -GDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGE-EVNWEKDFVEHMMQGIDTF  348 (421)
T ss_dssp             -ETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHTHHHHHHHHHHH
T ss_pred             -cCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHH
Confidence             4999999999999999999999999999999999999988764 3457889999988765433

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.97  E-value=3.7e-30  Score=292.55  Aligned_cols=344  Identities=13%  Similarity=0.124  Sum_probs=210.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh------------CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHH--HH
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK------------LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IE  106 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar------------~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~--l~  106 (712)
                      +..+||+||||||+|+++|+.|++            .|++|+||||.+.+.... +..+.++++++|+.+ |+.+.  +.
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~g~-g~~~~p~~~~~l~~l-Gi~e~~~~~   82 (526)
T 2pyx_A            5 KPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGV-GEGTWPSMRSTLSKI-GIDENDFIR   82 (526)
T ss_dssp             SCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCCCS-CEECCTHHHHHHHHH-TCCHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCcce-eeechHhHHHHHHHc-CCCHHHHHH
Confidence            456899999999999999999999            999999999977654433 788999999999999 99886  66


Q ss_pred             hcCCCccc------cce-------eEeeecCC-CCeeeeecCC-------Cc-------------------------ccc
Q 005134          107 RSQPPVDL------WRK-------FIYCTSVT-GPILGSVDHM-------QP-------------------------QDF  140 (712)
Q Consensus       107 ~~~~~~~~------~~~-------~~~~~~~~-G~~l~~~~~~-------~~-------------------------~~~  140 (712)
                      +.+.....      |..       ..+.+... |..+...+..       ..                         ..+
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~  162 (526)
T 2pyx_A           83 QCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQY  162 (526)
T ss_dssp             HTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTT
T ss_pred             HcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhcccc
Confidence            55433211      110       01111110 1000000000       00                         000


Q ss_pred             ccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCce
Q 005134          141 EKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC  219 (712)
Q Consensus       141 ~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~  219 (712)
                      .  ......++++|..|.+.|.+.+.+ .|+                   +++++ +|++++++++++.+.+... +|. 
T Consensus       163 ~--~~~~~~~~~~r~~l~~~L~~~a~~~~Gv-------------------~i~~~-~v~~i~~~~~g~~~~v~~~-~g~-  218 (526)
T 2pyx_A          163 H--FQNNYGYHLNAAKFSQLLTEHCTQKLGV-------------------THIRD-HVSQIINNQHGDIEKLITK-QNG-  218 (526)
T ss_dssp             C--CSSCCEEEECHHHHHHHHHHHHHHTSCC-------------------EEEEC-CEEEEEECTTSCEEEEEES-SSC-
T ss_pred             C--CCCCeeEEEcHHHHHHHHHHHHHhcCCC-------------------EEEEe-EEEEEEecCCCcEEEEEEC-CCC-
Confidence            0  111224678999999999999998 787                   89999 6999998776654455433 342 


Q ss_pred             eeEEEEecEEEeccCCCchh-hcccCCCcccccc---cccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecC
Q 005134          220 TERNIQCNILIGTDGAGSTV-RKLVGIDLVGEKD---LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDL  295 (712)
Q Consensus       220 ~~~~i~ad~VVgADG~~S~V-R~~lgi~~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  295 (712)
                         +++||+||+|||.+|.+ |+.+|+++.+...   ....+.+.........   ...+.. ...+.+.+..++++.. 
T Consensus       219 ---~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~g~~~~~pl~-  290 (526)
T 2pyx_A          219 ---EISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDANS---PIASCT-HSTAQPNGWIWDIGLP-  290 (526)
T ss_dssp             ---EEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTTC---CCCSSE-EEEEETTEEEEEEECS-
T ss_pred             ---EEEcCEEEECCCcchHHHHHHhCCCcccccccccCccEEEEEeeccCCCC---CCCCce-eEEecCCCeEEEeeCC-
Confidence               48999999999999999 6778877643321   1122222222110000   011111 1223333333334332 


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCC
Q 005134          296 KEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAG  375 (712)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~g  375 (712)
                       ....+..+ +.+.     ..+++...+.+++.+......++......|.+.....++|.  .|||+|+|||||.++|+.
T Consensus       291 -~~~~~~~v-~~~~-----~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAh~~~P~~  361 (526)
T 2pyx_A          291 -TRKGVGYV-YSSS-----HTNDIDAQKTLFNYLGVDGAAADKLEPRQLAINPGYRAKCW--QNNCIAIGMAAGFIEPLE  361 (526)
T ss_dssp             -SEEEEEEE-ECTT-----TCCHHHHHHHHHHHHTCCHHHHHHCCCEEEECCCEEESCSE--ETTEEECGGGTEECCCTT
T ss_pred             -CceEEEEE-ecCC-----CCChHHHHHHHHHHHHhcCcccccCCceEEecccCcccccc--CCCEEEEEhhhcccCccc
Confidence             22222211 1111     12445555666665532111111011223344444456665  499999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          376 GFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       376 G~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      |+|+|+||+||..|+..|...  +...+.+|++|+++|+++.+++.+....++.
T Consensus       362 GqGi~~ai~da~~La~~L~~~--~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  413 (526)
T 2pyx_A          362 ASALALIEWTASTLAQQLPPN--RMVMDTISARVNERYQQHWQQIIDFLKLHYV  413 (526)
T ss_dssp             CHHHHHHHHHHHHHHHTCCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888776421  1224689999999999999988876655554

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.97  E-value=1.7e-28  Score=281.54  Aligned_cols=332  Identities=15%  Similarity=0.099  Sum_probs=194.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-CceeecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH-PQAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~-~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~  113 (712)
                      .+++||+||||||+||++|+.|+++      |++|+||||.+.+..+ .++..+++++++.|  + +-   +.+.+.+..
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l-~~---~~~~g~~~~  106 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--F-PD---WKEKGAPLN  106 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--C-TT---HHHHTCCCC
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--H-HH---HHhcCCcee
Confidence            3568999999999999999999999      9999999999876543 45677899998876  3 21   222333332


Q ss_pred             cc---ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccce
Q 005134          114 LW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (712)
Q Consensus       114 ~~---~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (712)
                      ..   ..+.+... .+ .+ .++......    ......+.++|..|++.|.+.+++.|+                   +
T Consensus       107 ~~~~~~~~~~~~~-~~-~~-~~~~~~~~~----~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~  160 (584)
T 2gmh_A          107 TPVTEDRFGILTE-KY-RI-PVPILPGLP----MNNHGNYVVRLGHLVSWMGEQAEALGV-------------------E  160 (584)
T ss_dssp             EECCEEEEEEECS-SC-EE-ECCCCTTST----TCCTTCEECCHHHHHHHHHHHHHHTTC-------------------E
T ss_pred             eeechhheeeecc-CC-Cc-cccccCccc----cccCCCEEEeHHHHHHHHHHHHHHcCC-------------------E
Confidence            10   11222111 11 11 111000000    111224568899999999999998887                   9


Q ss_pred             EEeCcEEEEEEEcCCe-EE-EEEEec---cCCcee-----eEEEEecEEEeccCCCchhhccc----CCCccccc-cccc
Q 005134          191 ILMGHECVSVSATDQC-IN-VIASFL---KEGKCT-----ERNIQCNILIGTDGAGSTVRKLV----GIDLVGEK-DLQK  255 (712)
Q Consensus       191 v~~g~~v~~v~~~~~~-v~-v~v~~~---~~g~~~-----~~~i~ad~VVgADG~~S~VR~~l----gi~~~g~~-~~~~  255 (712)
                      |+++++++++.+++++ |+ |++.+.   .+|+..     ..+++||+||+|||++|.||+++    ++...... .+..
T Consensus       161 i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~  240 (584)
T 2gmh_A          161 VYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI  240 (584)
T ss_dssp             EETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEE
T ss_pred             EEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHh
Confidence            9999999999988754 43 443210   133200     13799999999999999999887    65532211 1111


Q ss_pred             EEEEEeecCccccccccCCCceEEEEee----cC--CeEEEEEecCCCCeEEEEEecCCCCCCCCCCC-HHHHHHHH---
Q 005134          256 LVSVHFLSKDLGDYLLNERPGMLFFIFN----TE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLI---  325 (712)
Q Consensus       256 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~i---  325 (712)
                      .+...+..+ ..    ...++...+.+.    ..  ..+++++....++.+.+.+........ ...+ .+.+.+++   
T Consensus       241 g~~~~~~v~-~~----~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~~l~~~~~~p  314 (584)
T 2gmh_A          241 GLKELWVID-EK----KWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQN-PYLSPFREFQRWKHHP  314 (584)
T ss_dssp             EEEEEEECC-GG----GCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCC-TTCCHHHHHHHHTTST
T ss_pred             hhhhheecC-cc----cccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCccc-ccCChHHHHHHHHhCh
Confidence            111112111 11    112333222221    11  123444333103455444322111111 1112 22332221   


Q ss_pred             --HHHhCCCCCcceEEEe---ecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHc-C
Q 005134          326 --FKLVGWELSDIDVIDI---KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D  399 (712)
Q Consensus       326 --~~~~g~~~~~~~i~~~---~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~-g  399 (712)
                        +..+..    .++...   ..|......+++|.  .+||+|+|||||.++|+.|||+|+||+||.+|||+|+.+++ +
T Consensus       315 ~i~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~--~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g  388 (584)
T 2gmh_A          315 SIKPTLEG----GKRIAYGARALNEGGFQSIPKLT--FPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE  388 (584)
T ss_dssp             TTHHHHTT----CEEEEEEEEEEECCGGGGCCCCE--ETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCC----CeEEEecceEccCCCcccCCccc--cCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcC
Confidence              112211    122211   11223344567776  49999999999999999999999999999999999999885 4


Q ss_pred             C-Cchh---hHHHHHHhhhHH
Q 005134          400 I-APAS---ILNTYETERKPI  416 (712)
Q Consensus       400 ~-a~~~---lL~sY~~eRrp~  416 (712)
                      . ..+.   +|++|+++|++.
T Consensus       389 ~~~~~~a~~~L~~Ye~~r~~~  409 (584)
T 2gmh_A          389 NLQSKTIGLHVTEYEDNLKNS  409 (584)
T ss_dssp             CCCCSSSSCCCTHHHHHHHTS
T ss_pred             CcchhhhhhhHHHHHHHHHHh
Confidence            2 3345   499999999976

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.96  E-value=3.1e-27  Score=269.30  Aligned_cols=340  Identities=13%  Similarity=0.110  Sum_probs=206.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCceeecCHhHHH-HHHhhhcHHHH--HHhcCCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~~~~~~~ra~~i~~rtme-ilr~l~Gl~d~--l~~~~~~~~~  114 (712)
                      +..+||+||||||+|+++|+.|++   .|++|+||||...+... .+..+.+++++ +++.+ |+.+.  +.........
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~-~g~~~~~~~~~~~l~~l-G~~~~~~~~~~~~~~~~   80 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIG-VGEATIPSLQKVFFDFL-GIPEREWMPQVNGAFKA   80 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCC-SCEECCTHHHHHTHHHH-TCCHHHHGGGGTCEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcC-CCcccchhHHHHHHHHh-CCCHHHHHHhcCchhhC
Confidence            345899999999999999999999   99999999997654433 37788899999 99999 88764  4443322210


Q ss_pred             ------cce-------eEeeecCCCCee--eeec-------------CCC----------cccc-------ccccCCccc
Q 005134          115 ------WRK-------FIYCTSVTGPIL--GSVD-------------HMQ----------PQDF-------EKVVSPVSV  149 (712)
Q Consensus       115 ------~~~-------~~~~~~~~G~~l--~~~~-------------~~~----------~~~~-------~~~~~p~~~  149 (712)
                            |..       ..+... .|...  ...+             ...          ..++       .........
T Consensus        81 g~~~~~w~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (538)
T 2aqj_A           81 AIKFVNWRKSPDPSRDDHFYHL-FGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHA  159 (538)
T ss_dssp             EEEEESCSSSCCTTSCCEEEEE-SSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCE
T ss_pred             CccccCcCcccccCCCCceECC-CCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCcc
Confidence                  100       000000 11000  0000             000          0000       000001124


Q ss_pred             cccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEE
Q 005134          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++++..|...|.+.+.+.|+                   +++++ +|++++.++++..+.+... +|+    +++||+|
T Consensus       160 ~~i~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~g~~~~v~~~-~g~----~i~ad~v  214 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAVERGV-------------------NRVVD-EVVDVRLNNRGYISNLLTK-EGR----TLEADLF  214 (538)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEET-TSC----EECCSEE
T ss_pred             EEEeHHHHHHHHHHHHHHCCC-------------------EEEEe-eEeEEEEcCCCcEEEEEEC-CCc----EEEeCEE
Confidence            678999999999999998887                   89999 8999998766543344432 442    6899999


Q ss_pred             EeccCCCchhh-cccCCCcccccc---cccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEe
Q 005134          230 IGTDGAGSTVR-KLVGIDLVGEKD---LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP  305 (712)
Q Consensus       230 VgADG~~S~VR-~~lgi~~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  305 (712)
                      |+|||.+|.+| +.+|+.+.+...   ....+.+......  .. ....+.. ...+.+.+..++++...   ...+...
T Consensus       215 V~A~G~~s~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~-~~~~~~~g~~~~~p~~~---~~~~g~v  287 (538)
T 2aqj_A          215 IDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDD--AR-DGVEPYT-SSIAMNSGWTWKIPMLG---RFGSGYV  287 (538)
T ss_dssp             EECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCH--HH-HCCCSSE-EEEECSSEEEEEEEETT---EEEEEEE
T ss_pred             EECCCCchhhHHHHhCCCccccccccccceEEEEecccCC--cc-cCCCCce-eeeecCCceEEEecCCC---ceEEEEE
Confidence            99999999995 456776543321   1122222222110  00 0011111 11233333334444432   2222222


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchhhHHHH
Q 005134          306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQD  385 (712)
Q Consensus       306 ~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~D  385 (712)
                      +..     ...+++...+.+++.++..+.    .....|.+.....++|.  .|||+|+|||||.++|+.|+|+|+||+|
T Consensus       288 ~~~-----~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~--~grvvliGDAAh~~~P~~gqG~~~a~~d  356 (538)
T 2aqj_A          288 FSS-----HFTSRDQATADFLKLWGLSDN----QPLNQIKFRVGRNKRAW--VNNCVSIGLSSCFLEPLESTGIYFIYAA  356 (538)
T ss_dssp             ECT-----TTSCHHHHHHHHHHHHTCCTT----CCCEEEECCCEEESCSE--ETTEEECGGGTEECCGGGSCHHHHHHHH
T ss_pred             EcC-----CCCChHHHHHHHHHHhcCCCC----CCceEEeeccccccccc--cCCEEEEcccccccCcchhccHHHHHHH
Confidence            211     122455666777777754321    11122333333455565  4999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          386 AHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       386 A~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      |..|+..|.   .+...+.+|+.|+++|+++.+++.+....++.
T Consensus       357 a~~La~~L~---~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  397 (538)
T 2aqj_A          357 LYQLVKHFP---DTSFDPRLSDAFNAEIVHMFDDCRDFVQAHYF  397 (538)
T ss_dssp             HHHHHHTCC---BTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999997764   34456789999999999999887776555553

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.96  E-value=1.2e-28  Score=277.78  Aligned_cols=307  Identities=21%  Similarity=0.230  Sum_probs=195.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..+||+||||||+||++|+.|+++|++|+||||.+.+.. .+...+.+++++.|+.+ |+.+....          +   
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~~~~~l~~~-g~~~~~~~----------~---  155 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRAL-GAKKFYGR----------F---  155 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHHHHHHHHTT-THHHHCTT----------T---
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChhHHHHHHHc-CCcccccc----------c---
Confidence            458999999999999999999999999999999987642 35677889999999998 88643100          0   


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                         .                    ......++|..|++.|.+.+.+.|+                   +|+++++|++++
T Consensus       156 ---~--------------------~~~~~~~~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~  193 (497)
T 2bry_A          156 ---C--------------------TGTLDHISIRQLQLLLLKVALLLGV-------------------EIHWGVKFTGLQ  193 (497)
T ss_dssp             ---T--------------------CTTCCEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEEEE
T ss_pred             ---c--------------------ccccccCCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEE
Confidence               0                    0001246788999999999988776                   999999999998


Q ss_pred             Ec---CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          202 AT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       202 ~~---~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      ++   ++++++++....+|+  ..++++|+||+|||++|.+|+..++++.|...+.....+... ..+.........+..
T Consensus       194 ~~~~~~~~~~v~~~~~~~g~--~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~~~~~G~~  270 (497)
T 2bry_A          194 PPPRKGSGWRAQLQPNPPAQ--LASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNG-RTVEETQVPEISGVA  270 (497)
T ss_dssp             CCCSTTCCBEEEEESCCCHH--HHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECC-CCHHHHTSCCBCC--
T ss_pred             EecCCCCEEEEEEEECCCCC--EEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeee-ccccccchhhcCceE
Confidence            75   356667665221331  236899999999999999998888777776543322221111 000000000011111


Q ss_pred             EEEeecC-----------CeEEEEEecCCCCeEEEEE-ecC------------CCC-C---CCCCCCHHHHH-------H
Q 005134          279 FFIFNTE-----------AIGVLVAHDLKEGEFILQV-PFY------------PPQ-Q---NLEDFSPEICE-------K  323 (712)
Q Consensus       279 ~~~~~~~-----------~~g~~~~~~~~~~~~~~~~-~~~------------~~~-~---~~~~~~~e~~~-------~  323 (712)
                      + .+++.           ...-++..+.  +.+.+.. +..            .+. .   .....+.+.+.       +
T Consensus       271 ~-~~~~~~f~~~~~~~Gi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  347 (497)
T 2bry_A          271 R-IYNQKFFQSLLKATGIDLENIVYYKD--ETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAAD  347 (497)
T ss_dssp             ---CCSSHHHHHHHHHCCCEEEEEEEES--SEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHH
T ss_pred             E-ecChhhhHhHHhhcCCCcccccccCC--CeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhccccc
Confidence            1 11110           0011111111  1111111 100            000 0   00112222111       1


Q ss_pred             HH--------H---HHhCCCCCcc-eEEEeecceechhhhccccccCCc-EEEEccCCc-cCCCCCCcchhhHHHHHHHH
Q 005134          324 LI--------F---KLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQ-IILAGDACH-RFPPAGGFGMNTGVQDAHNL  389 (712)
Q Consensus       324 ~i--------~---~~~g~~~~~~-~i~~~~~w~~~~~va~~~~~~~gR-V~LvGDAAH-~~~P~gG~G~n~gi~DA~~L  389 (712)
                      +-        +   ..+|.+...+ ++.....|++..+++++|+.  || |+|+||||| .++| +|||+|+||+||.+|
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~~~--gRr~~l~Gda~~~~~~p-~g~G~n~g~~~a~~l  424 (497)
T 2bry_A          348 FATHGKLGKLEFAQDARGRPDVAAFDFTSMMRAESSARVQEKHGA--RLLLGLVGDCLVEPFWP-LGTGVARGFLAAFDA  424 (497)
T ss_dssp             HHTTTTTCSCCBCBCTTSSBCEEEEECSEEEEESCSEEEEEETTE--EEEEEECGGGTBCCCGG-GCCHHHHHHHHHHHH
T ss_pred             cchhhccccchhhhhccCCCCCceeeeEEEEecchhhHHHHhcCC--cccceEeccccccCcCc-cccchhhHHHHHHHH
Confidence            11        1   1122221222 44566789999999999984  88 999999999 5666 999999999999999


Q ss_pred             HHHHHHHHcCCCchhhHHHHHHhhhHHHH
Q 005134          390 AWKIASVLKDIAPASILNTYETERKPIAE  418 (712)
Q Consensus       390 awkLa~vl~g~a~~~lL~sY~~eRrp~a~  418 (712)
                      +|+|+.+++|.+...+|    .||+++++
T Consensus       425 ~~~l~~~~~g~~~~~~l----~~r~~~~~  449 (497)
T 2bry_A          425 AWMVKRWAEGAGPLEVL----AERESLYQ  449 (497)
T ss_dssp             HHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred             HHHHHHHhCCCCccchh----hhHHHHhh
Confidence            99999999999888888    89999775

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.96  E-value=4.4e-27  Score=266.40  Aligned_cols=336  Identities=13%  Similarity=0.112  Sum_probs=203.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHH--HHhcCCCccc----
Q 005134           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVDL----  114 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~--l~~~~~~~~~----  114 (712)
                      +||+||||||+|+++|+.|++   +|++|+||||.+.+. .+.+..+.+.++++++.+ |+.+.  +.........    
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~-~~~g~~~~~~~~~~l~~l-gi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRR-IGVGEATFSTVRHFFDYL-GLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHH-TCCHHHHHHHTTCEEECEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCc-eeeccccCcchHHHHHHc-CCCHHHHHHHcCCeEecccee
Confidence            799999999999999999999   999999999986543 334677889999999999 98775  5554422211    


Q ss_pred             --cce--eEeeecCC------CCee------------e------------eecCCC----cccc----c------c--cc
Q 005134          115 --WRK--FIYCTSVT------GPIL------------G------------SVDHMQ----PQDF----E------K--VV  144 (712)
Q Consensus       115 --~~~--~~~~~~~~------G~~l------------~------------~~~~~~----~~~~----~------~--~~  144 (712)
                        |..  ..+.+...      +..+            .            ......    ...+    .      .  ..
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence              100  00011000      0000            0            000000    0001    0      0  00


Q ss_pred             C--CccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeE
Q 005134          145 S--PVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER  222 (712)
Q Consensus       145 ~--p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~  222 (712)
                      .  ....+++++..|.+.|.+.+.+.|+                   +++++ +|+++++++++..+.+... +|+    
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~~~~~~v~~~-~g~----  215 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGV-------------------RHVVD-DVQHVGQDERGWISGVHTK-QHG----  215 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEES-SSC----
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCC-------------------EEEEC-eEeEEEEcCCCCEEEEEEC-CCC----
Confidence            0  1224678999999999999998887                   99999 9999998766633344432 452    


Q ss_pred             EEEecEEEeccCCCchhh-cccCCCccccc--c-cccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCC
Q 005134          223 NIQCNILIGTDGAGSTVR-KLVGIDLVGEK--D-LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG  298 (712)
Q Consensus       223 ~i~ad~VVgADG~~S~VR-~~lgi~~~g~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  298 (712)
                      +++||+||+|||.+|.+| +.+|+++.+..  . ....+.+.+......    ...+ .....+.+.+..++++..  + 
T Consensus       216 ~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~g~~~~~P~~--~-  287 (511)
T 2weu_A          216 EISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNNRAVALRVPRENDE----DMRP-YTTATAMSAGWMWTIPLF--K-  287 (511)
T ss_dssp             EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECSSGG----GCCS-SEEEEEETTEEEEEEECS--S-
T ss_pred             EEEcCEEEECCCcchHHHHHHhCCCCccccccCcccceEEEEeccCCCC----CCCc-ceeceecCCCcEEEEECC--C-
Confidence            689999999999999995 55787654321  1 112222222211100    0111 122233444334444432  1 


Q ss_pred             eEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCC--cceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCC
Q 005134          299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS--DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG  376 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~--~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG  376 (712)
                      ...+.+.+..     ...+++...+.+++.++..+.  ....+     .+.....+++.  .+||+|+|||||.++|+.|
T Consensus       288 ~~~~g~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~rv~liGDAAh~~~P~~g  355 (511)
T 2weu_A          288 RDGNGYVYSD-----EFISPEEAERELRSTVAPGRDDLEANHI-----QMRIGRNERTW--INNCVAVGLSAAFVEPLES  355 (511)
T ss_dssp             EEEEEEEECT-----TTSCHHHHHHHHHHHHCTTCTTSCCEEE-----ECCCEEESCSE--ETTEEECGGGTEECCGGGC
T ss_pred             ceEEEEEECC-----CCCCHHHHHHHHHHHhCcccccccceeE-----Eeecccccccc--CCCEEEEechhhccCcccc
Confidence            2322222221     123566667777777765421  12222     11122344554  4999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       377 ~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      +|+|+|++||..|++.|..   +...+.+|+.|+++|+++.+.+.+.....+.
T Consensus       356 ~G~~~a~~da~~La~~l~~---~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  405 (511)
T 2weu_A          356 TGIFFIQHAIEQLVKHFPG---ERWDPVLISAYNERMAHMVDGVKEFLVLHYK  405 (511)
T ss_dssp             CHHHHHHHHHHHHHHTCCC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988762   4456789999999999999888776555444

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.95  E-value=3.6e-27  Score=269.23  Aligned_cols=339  Identities=12%  Similarity=0.098  Sum_probs=207.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCceeecCHhHHH-HHHhhhcHHHH--HHhcCCCccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPVDL  114 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~~~~~~~ra~~i~~rtme-ilr~l~Gl~d~--l~~~~~~~~~  114 (712)
                      +..+||+||||||+|+++|+.|++   .|++|+||||.+.+.. ..+..+.+++++ +++.+ |+.+.  +.........
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~-~~g~~~~p~~~~~~l~~l-Gi~~~~~~~~~~~~~~~  100 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL-GVGEATIPNLQTAFFDFL-GIPEDEWMRECNASYKV  100 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCC-CCCEECCTHHHHHTHHHH-TCCHHHHHHHTTCEEEC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCcc-ceeeeechhHHHHHHHHh-CCChHHHHHhcCCeEEE
Confidence            346899999999999999999999   9999999999765443 346788899999 99999 98765  5544322211


Q ss_pred             ------ccee---------------EeeecCCCCe-------eeee----c-----CCC----------cccccc-----
Q 005134          115 ------WRKF---------------IYCTSVTGPI-------LGSV----D-----HMQ----------PQDFEK-----  142 (712)
Q Consensus       115 ------~~~~---------------~~~~~~~G~~-------l~~~----~-----~~~----------~~~~~~-----  142 (712)
                            |...               .+.... |..       +...    .     ...          ..++..     
T Consensus       101 g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (550)
T 2e4g_A          101 AIKFINWRTAGEGTSEARELDGGPDHFYHSF-GLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRL  179 (550)
T ss_dssp             EEEEESSSSCCCCCSSCCEETTEESEEEEES-SCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCT
T ss_pred             eeeEeecccccccccccccccCCCCeeEecC-CccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhh
Confidence                  1100               000000 000       0000    0     000          000000     


Q ss_pred             --ccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCce
Q 005134          143 --VVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC  219 (712)
Q Consensus       143 --~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~  219 (712)
                        .......+++++..|.+.|.+.+.+. |+                   +++++ +|++++.++++..+.+... +|+ 
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv-------------------~i~~~-~V~~i~~~~~g~~~~v~~~-~G~-  237 (550)
T 2e4g_A          180 DGSKVTNYAWHFDAHLVADFLRRFATEKLGV-------------------RHVED-RVEHVQRDANGNIESVRTA-TGR-  237 (550)
T ss_dssp             TSCBCSCCEEEECHHHHHHHHHHHHHHHSCC-------------------EEEEC-CEEEEEECTTSCEEEEEET-TSC-
T ss_pred             cCCCCCCcceEEcHHHHHHHHHHHHHhcCCc-------------------EEEEC-eEeEEEEcCCCCEEEEEEC-CCC-
Confidence              00011235689999999999999988 87                   99999 9999998766633344432 442 


Q ss_pred             eeEEEEecEEEeccCCCchh-hcccCCCccccccc---ccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecC
Q 005134          220 TERNIQCNILIGTDGAGSTV-RKLVGIDLVGEKDL---QKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDL  295 (712)
Q Consensus       220 ~~~~i~ad~VVgADG~~S~V-R~~lgi~~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  295 (712)
                         +++||+||+|||.+|.+ ++.+|+.+.+...+   ...+.+........   ....+... ....+.+..++++...
T Consensus       238 ---~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~ipl~~  310 (550)
T 2e4g_A          238 ---VFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDA---NGVEPFTS-AIAMKSGWTWKIPMLG  310 (550)
T ss_dssp             ---EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHH---HCCCSSEE-EEECSSEEEEEEECSS
T ss_pred             ---EEECCEEEECCCCchhhHHHHhCCCcccccccccccceEEEeecccCCc---ccCCCcee-eeecCCceEEEccCCC
Confidence               68999999999999999 66778765433211   11222222111000   00111111 1122332333333321


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCC--CcceEEEeecceechhhhccccccCCcEEEEccCCccCCC
Q 005134          296 KEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL--SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP  373 (712)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~--~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P  373 (712)
                         .......+..     ...+++...+.+++.++..+  .....+     .+.....+++.  .+||+|+|||||.++|
T Consensus       311 ---~~~~g~v~~~-----~~~~~~~~~~~l~~~~~~~p~l~~~~~i-----~~~~~~~~~~~--~~rvvliGDAAh~~~P  375 (550)
T 2e4g_A          311 ---RFGTGYVYSS-----RFATEDEAVREFCEMWHLDPETQPLNRI-----RFRVGRNRRAW--VGNCVSIGTSSCFVEP  375 (550)
T ss_dssp             ---EEEEEEEECT-----TTSCHHHHHHHHHHHTTCCTTTSCCEEE-----ECCCEEESCSE--ETTEEECSTTTEECCG
T ss_pred             ---ccceEEEEec-----CCCChHHHHHHHHHhhCcCcccCCCceE-----EecCCCccccc--cCCEEEEehhhcccCc
Confidence               1111111111     12355666777777776542  112221     22223344554  4999999999999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          374 AGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       374 ~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      +.|||+|+|++||.+|++.|.   ++...+.+|++|+++|+++.+.+.+....++.
T Consensus       376 ~~GqGi~~a~~da~~La~~L~---~~~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~  428 (550)
T 2e4g_A          376 LESTGIYFVYAALYQLVKHFP---DKSLNPVLTARFNREIETMFDDTRDFIQAHFY  428 (550)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCC---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998775   34557889999999999999988887766654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.92  E-value=1.8e-24  Score=239.55  Aligned_cols=321  Identities=13%  Similarity=0.030  Sum_probs=170.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-C---ceeecCHhHHHHHHhhhcHHHHHHhcCCCccccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-P---QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR  116 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~-~---ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~  116 (712)
                      .++.||+||||||+||++|+.|+++|++|+||||++..... +   ....+...+++.++.+ |+.. ......+..   
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-g~~~-~~~~~~~~~---   94 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVAL-DVNE-WPSEEFGYF---   94 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHT-TCCC-SCHHHHCEE---
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhc-Chhh-hhhhccccc---
Confidence            34579999999999999999999999999999998733211 1   1233556788888777 6521 000011111   


Q ss_pred             eeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcE
Q 005134          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (712)
Q Consensus       117 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~  196 (712)
                      .+.... .....+         ++.... ......+.+..+.+.|.+.+.+.|+                   ++++.. 
T Consensus        95 ~~~~~~-~~~~~~---------~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~Gv-------------------~v~~~~-  143 (430)
T 3ihm_A           95 GHYYYV-GGPQPM---------RFYGDL-KAPSRAVDYRLYQPMLMRALEARGG-------------------KFCYDA-  143 (430)
T ss_dssp             EEEEEE-CSSSCE---------EEEEEE-EEEEBEECHHHHHHHHHHHHHHTTC-------------------EEEECC-
T ss_pred             ceeEEE-CCCCcc---------ccchhc-CCcceeecHHHHHHHHHHHHHHcCC-------------------EEEEEe-
Confidence            110000 011000         110000 1123567899999999999998887                   554421 


Q ss_pred             EEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcc--cccccccEE-EEEeecCccccccccC
Q 005134          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLV--GEKDLQKLV-SVHFLSKDLGDYLLNE  273 (712)
Q Consensus       197 v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~--g~~~~~~~~-~~~~~~~~l~~~~~~~  273 (712)
                      +            ++.   +.+  +...++|+||+|||.+|.+|.. +....  .....+..+ ...+..  +..   ..
T Consensus       144 v------------~~~---~l~--~~~~~ad~VV~AdG~~S~~~~~-~~~~~~~~~~~p~r~~~~~~~~g--~~~---~~  200 (430)
T 3ihm_A          144 V------------SAE---DLE--GLSEQYDLLVVCTGKYALGKVF-EKQSENSPFEKPQRALCVGLFKG--IKE---AP  200 (430)
T ss_dssp             C------------CGG---GHH--HHHTTSSEEEECCCCTTGGGGS-CBCGGGCCCSSCSSEEEEEEEES--BCC---CS
T ss_pred             c------------chh---hhh--hhcccCCEEEECCCCcchHHhc-cCCCCCCcccCCCeeEEEEEEcc--CCC---CC
Confidence            0            000   000  0112589999999999988743 22211  111122222 222221  111   11


Q ss_pred             CCceEEEEeecCCeEEEEEecCCCCeEEEE-EecCCCC--CCCCCC----CHHHH----HHHHHHHhCC---CCC-----
Q 005134          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQ-VPFYPPQ--QNLEDF----SPEIC----EKLIFKLVGW---ELS-----  334 (712)
Q Consensus       274 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~----~~e~~----~~~i~~~~g~---~~~-----  334 (712)
                      .....+.++.+.+..++++.....+...+. +...+..  ......    +++..    .+.++...+.   ...     
T Consensus       201 ~~~~~~~~~~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (430)
T 3ihm_A          201 IRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFD  280 (430)
T ss_dssp             SCCEEEEEETTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCE
T ss_pred             cCeeeeeecCCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhc
Confidence            112223333222222333332122222111 1111211  111111    44433    3333332211   000     


Q ss_pred             ----cceEEEeecceechhhhccccccCCcEEE-EccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 005134          335 ----DIDVIDIKPWVMHAEVAEKFLCCYNQIIL-AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY  409 (712)
Q Consensus       335 ----~~~i~~~~~w~~~~~va~~~~~~~gRV~L-vGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY  409 (712)
                          ...+.....|+.......+|.  .||++| +|||||.++|++|||+|+||+||.+|+|+|+..  + ..+.+|.+|
T Consensus       281 ~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~--~-~~~~~~~~~  355 (430)
T 3ihm_A          281 LANSSLDILQGGVVPAFRDGHATLN--NGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH--S-VYDLRFSEH  355 (430)
T ss_dssp             ESSSTTSEEEECCCCEEBCSEEECT--TSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC--S-CCSHHHHHH
T ss_pred             cccCccceeecceeecccccccccC--CCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc--C-CHHHHHHHH
Confidence                112222233444444556776  488888 999999999999999999999999999999975  3 367899999


Q ss_pred             HHhhh-HHHHHHHHHHH
Q 005134          410 ETERK-PIAEFNTALSV  425 (712)
Q Consensus       410 ~~eRr-p~a~~~~~~s~  425 (712)
                      +.+|+ ++++.+.+++.
T Consensus       356 ~~~r~~~~~~~~~~~~~  372 (430)
T 3ihm_A          356 LERRRQDRVLCATRWTN  372 (430)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999 66666555543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.63  E-value=1.3e-14  Score=158.35  Aligned_cols=218  Identities=9%  Similarity=0.092  Sum_probs=122.4

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+.-..+...|.+.+++.|+                   +++++++|++++.+++.+. .+.. ++|     +++||+||
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~-~v~~-~~g-----~~~a~~vV  223 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGV-------------------DIIQNCEVTGFIKDGEKVT-GVKT-TRG-----TIHAGKVA  223 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEE-EEEE-TTC-----CEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEEeCCEEE-EEEe-CCc-----eEECCEEE
Confidence            34455788889999988887                   9999999999998876643 2222 233     58999999


Q ss_pred             eccCCCc-hhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCCC
Q 005134          231 GTDGAGS-TVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPP  309 (712)
Q Consensus       231 gADG~~S-~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (712)
                      .|+|++| .+++.+|+..........++..  .  .+...+    ...   +++.+...++.+.  .++.+.+.....+.
T Consensus       224 ~a~G~~s~~l~~~~g~~~~~~~~~~~~~~~--~--~~~~~~----~~~---~~~~~~~~y~~p~--~~g~~~ig~~~~~~  290 (405)
T 2gag_B          224 LAGAGHSSVLAEMAGFELPIQSHPLQALVS--E--LFEPVH----PTV---VMSNHIHVYVSQA--HKGELVMGAGIDSY  290 (405)
T ss_dssp             ECCGGGHHHHHHHHTCCCCEEEEEEEEEEE--E--EBCSCC----CSE---EEETTTTEEEEEC--TTSEEEEEEEECSS
T ss_pred             ECCchhHHHHHHHcCCCCCccccceeEEEe--c--CCcccc----Cce---EEeCCCcEEEEEc--CCCcEEEEeccCCC
Confidence            9999998 6888887765322222222111  1  111110    111   1122222222222  23455554332211


Q ss_pred             CCCCCCCCHHH---HHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCCccCCCCCCcchh-hHHHH
Q 005134          310 QQNLEDFSPEI---CEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMN-TGVQD  385 (712)
Q Consensus       310 ~~~~~~~~~e~---~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAAH~~~P~gG~G~n-~gi~D  385 (712)
                      .......+++.   +.+.+++.++. ....++.  ..|.-.    ..+.  .++++++|++. .-.-+...|+| .|+..
T Consensus       291 ~~~~~~~~~~~~~~l~~~~~~~~p~-l~~~~~~--~~w~g~----~~~t--~d~~p~ig~~~-~~~l~~~~G~~g~G~~~  360 (405)
T 2gag_B          291 NGYGQRGAFHVIQEQMAAAVELFPI-FARAHVL--RTWGGI----VDTT--MDASPIISKTP-IQNLYVNCGWGTGGFKG  360 (405)
T ss_dssp             CCCSSCCCTHHHHHHHHHHHHHCGG-GGGCEEC--EEEEEE----EEEE--TTSCCEEEECS-SBTEEEEECCGGGCSTT
T ss_pred             CccccCCCHHHHHHHHHHHHHhCCc-cccCCcc--eEEeec----cccC--CCCCCEecccC-CCCEEEEecCCCchhhH
Confidence            11111223333   33444444432 1122332  234211    1122  37889999975 11112345555 78999


Q ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHhhhHHH
Q 005134          386 AHNLAWKIASVLKDIAPASILNTYETERKPIA  417 (712)
Q Consensus       386 A~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a  417 (712)
                      +.+++|+|+..+.+...+..++.|+.+|.+..
T Consensus       361 a~~~g~~la~~i~g~~~~~~~~~~~~~R~~~~  392 (405)
T 2gag_B          361 TPGAGFTLAHTIANDEPHELNKPFSLERFETG  392 (405)
T ss_dssp             HHHHHHHHHHHHHHTSCCTTTTTSCSTHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCCccccccCcchhcCC
Confidence            99999999999887766778999999997653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.56  E-value=5.6e-14  Score=142.76  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=34.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+||+||||||+||++|+.|+++|++|+||||.+.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            489999999999999999999999999999998865

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.53  E-value=9.7e-14  Score=150.35  Aligned_cols=209  Identities=14%  Similarity=0.100  Sum_probs=111.3

Q ss_pred             cccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEE
Q 005134          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      ..+....+...|.+.+.+.|+                   +++++++|++++.+++++.++.   .+|     +++||+|
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~v~~---~~g-----~~~a~~v  211 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKT---PSG-----DVWANHV  211 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEE---TTE-----EEEEEEE
T ss_pred             eEEcHHHHHHHHHHHHHHCCC-------------------EEEcCCcEEEEEEECCEEEEEc---CCc-----eEEcCEE
Confidence            355667888999999988887                   9999999999998888774432   222     5899999


Q ss_pred             EeccCCCch-hhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEeecCCeEEEEEecCCCCeEEEEEecCC
Q 005134          230 IGTDGAGST-VRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYP  308 (712)
Q Consensus       230 VgADG~~S~-VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  308 (712)
                      |.|+|.+|. +.+.+++...-.......  +.+....  ..+    ...   ++..  ..++.+.  .++.+.+......
T Consensus       212 V~A~G~~s~~l~~~~~~~~~~~~~~g~~--~~~~~~~--~~~----~~~---~~~~--~~~~~p~--~~g~~~vG~~~~~  276 (382)
T 1ryi_A          212 VVASGVWSGMFFKQLGLNNAFLPVKGEC--LSVWNDD--IPL----TKT---LYHD--HCYIVPR--KSGRLVVGATMKP  276 (382)
T ss_dssp             EECCGGGTHHHHHHTTCCCCCEEEEEEE--EEEECCS--SCC----CSE---EEET--TEEEEEC--TTSEEEEECCCEE
T ss_pred             EECCChhHHHHHHhcCCCCceeccceEE--EEECCCC--CCc----cce---EEcC--CEEEEEc--CCCeEEEeecccc
Confidence            999999987 777776543211111111  1222111  110    111   1222  1233332  2244444422111


Q ss_pred             CCCCCCCCCHHHHH---HHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEEEEccCC-----ccCCCCCCcchh
Q 005134          309 PQQNLEDFSPEICE---KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDAC-----HRFPPAGGFGMN  380 (712)
Q Consensus       309 ~~~~~~~~~~e~~~---~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~LvGDAA-----H~~~P~gG~G~n  380 (712)
                      . ......+++...   +.++++++. ....++.  ..|.-.    ..+.  .++..++|++.     +...+++|.|+.
T Consensus       277 ~-~~~~~~~~~~~~~l~~~~~~~~p~-l~~~~~~--~~w~g~----~~~t--~d~~p~ig~~~~~~~l~~~~G~~g~G~~  346 (382)
T 1ryi_A          277 G-DWSETPDLGGLESVMKKAKTMLPA-IQNMKVD--RFWAGL----RPGT--KDGKPYIGRHPEDSRILFAAGHFRNGIL  346 (382)
T ss_dssp             T-CCCCSCCHHHHHHHHHHHHHHCGG-GGGSEEE--EEEEEE----EEEC--SSSCCEEEEETTEEEEEEEECCSSCTTT
T ss_pred             c-CCCCCCCHHHHHHHHHHHHHhCCC-cCCCcee--eEEEEe----cccC--CCCCcEeccCCCcCCEEEEEcCCcchHH
Confidence            1 111123344333   334444432 1122332  223211    1122  25667778763     335678889999


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCchhhH-HHHHHhhh
Q 005134          381 TGVQDAHNLAWKIASVLKDIAPASIL-NTYETERK  414 (712)
Q Consensus       381 ~gi~DA~~LawkLa~vl~g~a~~~lL-~sY~~eRr  414 (712)
                      ++..-+..||..|    .+...+..+ +.|.-+|.
T Consensus       347 ~a~~~g~~la~~i----~~~~~~~~~~~~~~~~Rf  377 (382)
T 1ryi_A          347 LAPATGALISDLI----MNKEVNQDWLHAFRIDRK  377 (382)
T ss_dssp             THHHHHHHHHHHH----TTCCCCHHHHHHTCSCCC
T ss_pred             HhHHHHHHHHHHH----hCCCCCchhhcCCChhhc
Confidence            8887776666555    344333334 77766664

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.45  E-value=6.1e-13  Score=144.08  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++...+...|.+.+++.|+                   +++++++|++++.++++++ ++.   .+|     +++||+|
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~v~gv~~---~~g-----~i~a~~V  197 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGA-------------------KLLEYTEVKGFLIENNEIKGVKT---NKG-----IIKTGIV  197 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEEEEEE---TTE-----EEECSEE
T ss_pred             eECHHHHHHHHHHHHHHCCC-------------------EEECCceEEEEEEECCEEEEEEE---CCc-----EEECCEE
Confidence            45667888889999988887                   9999999999998888765 433   233     5899999


Q ss_pred             EeccCCCc-hhhcccCCC
Q 005134          230 IGTDGAGS-TVRKLVGID  246 (712)
Q Consensus       230 VgADG~~S-~VR~~lgi~  246 (712)
                      |.|+|.+| .+.+.+|+.
T Consensus       198 V~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          198 VNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EECCGGGHHHHHHHHTCC
T ss_pred             EECcchhHHHHHHHcCCC
Confidence            99999998 567777654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.35  E-value=3.9e-12  Score=139.45  Aligned_cols=143  Identities=18%  Similarity=0.275  Sum_probs=89.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CceeecC------------H-hHHHHHHhh--
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFIN------------N-RYALVFRKL--   98 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra~~i~------------~-rtmeilr~l--   98 (712)
                      .+.++||+||||||+||++|+.|+++|++|+||||.+.+...      ++....+            + .....+.++  
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP  103 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence            356799999999999999999999999999999999865211      0110000            0 011122222  


Q ss_pred             hcHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcc
Q 005134           99 DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (712)
Q Consensus        99 ~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~  178 (712)
                      ..+.+.+...+.+..        ....|.                    .........+.+.|.+.+++.|+        
T Consensus       104 ~~~~~~~~~~Gi~~~--------~~~~g~--------------------~~~~~~~~~l~~~L~~~l~~~Gv--------  147 (417)
T 3v76_A          104 QDFVALVERHGIGWH--------EKTLGQ--------------------LFCDHSAKDIIRMLMAEMKEAGV--------  147 (417)
T ss_dssp             HHHHHHHHHTTCCEE--------ECSTTE--------------------EEESSCHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHcCCCcE--------EeeCCE--------------------EeeCCCHHHHHHHHHHHHHHCCC--------
Confidence            011111222221110        000000                    01123466788889999998887        


Q ss_pred             ccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       179 ~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                                 +++++++|++++.+++++.+...   +|     +++||+||.|+|.+|
T Consensus       148 -----------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          148 -----------QLRLETSIGEVERTASGFRVTTS---AG-----TVDAASLVVASGGKS  187 (417)
T ss_dssp             -----------EEECSCCEEEEEEETTEEEEEET---TE-----EEEESEEEECCCCSS
T ss_pred             -----------EEEECCEEEEEEEeCCEEEEEEC---Cc-----EEEeeEEEECCCCcc
Confidence                       99999999999998888665542   22     689999999999999

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.35  E-value=2.2e-11  Score=132.68  Aligned_cols=67  Identities=9%  Similarity=0.112  Sum_probs=53.1

Q ss_pred             cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      +....+...|.+.+.+.|+                   +++++++|++++.++++++++.   +++     +++||+||.
T Consensus       150 ~~~~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~v~t---~~g-----~i~a~~VV~  202 (397)
T 2oln_A          150 IDVRGTLAALFTLAQAAGA-------------------TLRAGETVTELVPDADGVSVTT---DRG-----TYRAGKVVL  202 (397)
T ss_dssp             EEHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEETTEEEEEE---SSC-----EEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHcCC-------------------EEECCCEEEEEEEcCCeEEEEE---CCC-----EEEcCEEEE
Confidence            3445678888888888887                   9999999999999888866532   233     589999999


Q ss_pred             ccCCC-chhhcccCC
Q 005134          232 TDGAG-STVRKLVGI  245 (712)
Q Consensus       232 ADG~~-S~VR~~lgi  245 (712)
                      |+|++ +.+++.+|+
T Consensus       203 A~G~~s~~l~~~~g~  217 (397)
T 2oln_A          203 ACGPYTNDLLEPLGA  217 (397)
T ss_dssp             CCGGGHHHHHGGGTC
T ss_pred             cCCcChHHHhhhcCC
Confidence            99999 457777775

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.34  E-value=2.2e-11  Score=131.95  Aligned_cols=67  Identities=10%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+....+...|.+.+++.|+                   +++++++|++++.+++++.++.   ++|     +++||+||
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~~~v~~---~~g-----~~~a~~vV  198 (389)
T 2gf3_A          146 VLFSENCIRAYRELAEARGA-------------------KVLTHTRVEDFDISPDSVKIET---ANG-----SYTADKLI  198 (389)
T ss_dssp             EEEHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECSSCEEEEE---TTE-----EEEEEEEE
T ss_pred             EEeHHHHHHHHHHHHHHCCC-------------------EEEcCcEEEEEEecCCeEEEEe---CCC-----EEEeCEEE
Confidence            34456788889999988887                   9999999999999888765542   222     58999999


Q ss_pred             eccCCCch-hhcccC
Q 005134          231 GTDGAGST-VRKLVG  244 (712)
Q Consensus       231 gADG~~S~-VR~~lg  244 (712)
                      .|+|.+|. +.+.++
T Consensus       199 ~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          199 VSMGAWNSKLLSKLN  213 (389)
T ss_dssp             ECCGGGHHHHGGGGT
T ss_pred             EecCccHHHHhhhhc
Confidence            99999975 555565

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.33  E-value=4.3e-11  Score=129.10  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=54.6

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++...+...|.+.+++.|+                   +++++++|++++.+++++.|+.   .+|     +++||.||
T Consensus       150 ~~~~~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t---~~g-----~i~a~~VV  202 (381)
T 3nyc_A          150 DIDTDALHQGYLRGIRRNQG-------------------QVLCNHEALEIRRVDGAWEVRC---DAG-----SYRAAVLV  202 (381)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEESSCCCCEEEEETTEEEEEC---SSE-----EEEESEEE
T ss_pred             eECHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEEeCCeEEEEe---CCC-----EEEcCEEE
Confidence            35567788889999988887                   9999999999999888755443   122     68999999


Q ss_pred             eccCCCc-hhhcccCCC
Q 005134          231 GTDGAGS-TVRKLVGID  246 (712)
Q Consensus       231 gADG~~S-~VR~~lgi~  246 (712)
                      .|+|++| .+.+.+|+.
T Consensus       203 ~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          203 NAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             ECCGGGHHHHHHHHTCC
T ss_pred             ECCChhHHHHHHHhCCC
Confidence            9999998 466667754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.33  E-value=1.7e-11  Score=131.57  Aligned_cols=72  Identities=11%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .+....+...|.+.+++.|+                   +++++++|++++.++++ +.+++.   +|+  ..+++||+|
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~~~a~~V  201 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGA-------------------QLVFHTPLIAGRVRPEGGFELDFG---GAE--PMTLSCRVL  201 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECTTSSEEEEEC---TTS--CEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEEcCCceEEEEEC---CCc--eeEEEeCEE
Confidence            45667888899999999887                   99999999999998776 655442   442  357999999


Q ss_pred             EeccCCCc-hhhccc-CCC
Q 005134          230 IGTDGAGS-TVRKLV-GID  246 (712)
Q Consensus       230 VgADG~~S-~VR~~l-gi~  246 (712)
                      |.|+|++| .+.+.+ |++
T Consensus       202 V~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          202 INAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECCGGGHHHHHHTEETSC
T ss_pred             EECCCcchHHHHHHhcCCC
Confidence            99999998 567777 765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.33  E-value=3.8e-11  Score=115.66  Aligned_cols=118  Identities=22%  Similarity=0.321  Sum_probs=86.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      ++|+||||||+|+.+|..|+++|.+|+|||+.+.....  ..           .+              .         .
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~--~~-----------~~--------------~---------~   45 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG--VS-----------RV--------------P---------N   45 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTT--CS-----------CC--------------C---------C
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccC--ch-----------hh--------------h---------c
Confidence            68999999999999999999999999999998732110  00           00              0         0


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                      ..+             +     |   ..+....+...|.+.+++.|+                   +++++ ++++++.+
T Consensus        46 ~~~-------------~-----~---~~~~~~~~~~~l~~~~~~~gv-------------------~v~~~-~v~~i~~~   84 (180)
T 2ywl_A           46 YPG-------------L-----L---DEPSGEELLRRLEAHARRYGA-------------------EVRPG-VVKGVRDM   84 (180)
T ss_dssp             STT-------------C-----T---TCCCHHHHHHHHHHHHHHTTC-------------------EEEEC-CCCEEEEC
T ss_pred             cCC-------------C-----c---CCCCHHHHHHHHHHHHHHcCC-------------------EEEeC-EEEEEEEc
Confidence            000             0     0   123456788888888888887                   89999 99999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCC
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID  246 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~  246 (712)
                      ++++++++.   +|     ++++|+||.|+|.+|.+++.+|++
T Consensus        85 ~~~~~v~~~---~g-----~i~ad~vI~A~G~~~~~~~~~g~~  119 (180)
T 2ywl_A           85 GGVFEVETE---EG-----VEKAERLLLCTHKDPTLPSLLGLT  119 (180)
T ss_dssp             SSSEEEECS---SC-----EEEEEEEEECCTTCCHHHHHHTCC
T ss_pred             CCEEEEEEC---CC-----EEEECEEEECCCCCCCccccCCCC
Confidence            777655432   33     589999999999999887777654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.30  E-value=1.3e-11  Score=136.93  Aligned_cols=166  Identities=17%  Similarity=0.251  Sum_probs=93.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CceeecCHhHH-HHHHhhh---c-HHHHHHhcC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYA-LVFRKLD---G-LAEEIERSQ  109 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra~~i~~rtm-eilr~l~---G-l~d~l~~~~  109 (712)
                      .+++||+|||||++||++|+.|+++|++|+||||.+.+...      ++....+.... +++..+.   . +...+....
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN  103 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcC
Confidence            34589999999999999999999999999999998754210      01111110000 1111110   0 000000000


Q ss_pred             CCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccc
Q 005134          110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (712)
Q Consensus       110 ~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (712)
                       ..+.   ..++. ..|-.+...      .... ..|   .......+.+.|.+.+++.|+                   
T Consensus       104 -~~~~---~~~~~-~~G~~~~~~------~~g~-~~p---~~~~~~~l~~~L~~~~~~~GV-------------------  149 (447)
T 2i0z_A          104 -NEDI---ITFFE-NLGVKLKEE------DHGR-MFP---VSNKAQSVVDALLTRLKDLGV-------------------  149 (447)
T ss_dssp             -HHHH---HHHHH-HTTCCEEEC------GGGE-EEE---TTCCHHHHHHHHHHHHHHTTC-------------------
T ss_pred             -HHHH---HHHHH-hcCCceEEe------eCCE-EEC---CCCCHHHHHHHHHHHHHHCCC-------------------
Confidence             0000   00000 001000000      0000 000   011246778889898888887                   


Q ss_pred             eEEeCcEEEEEEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCc-----------hhhcccCCCc
Q 005134          190 EILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS-----------TVRKLVGIDL  247 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S-----------~VR~~lgi~~  247 (712)
                      +|+++++|+++..+++. +.|++   .+|+    +++||.||.|+|..|           .+++++|+..
T Consensus       150 ~i~~~~~V~~i~~~~~~v~~V~~---~~G~----~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          150 KIRTNTPVETIEYENGQTKAVIL---QTGE----VLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             EEECSCCEEEEEEETTEEEEEEE---TTCC----EEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             EEEeCcEEEEEEecCCcEEEEEE---CCCC----EEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence            99999999999987776 33433   2442    589999999999999           7777777654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.29  E-value=8.1e-10  Score=124.22  Aligned_cols=73  Identities=15%  Similarity=0.052  Sum_probs=57.1

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++...+...|.+.+.+.|+                   +++++++|++++.+++.+.|++.+..+|+  +.+++||+||
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv-------------------~i~~~~~V~~l~~~~~~~~V~~~d~~~G~--~~~i~A~~VV  203 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGG-------------------EVLTRTRATSARRENGLWIVEAEDIDTGK--KYSWQARGLV  203 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEEETTEEEEEEEETTTCC--EEEEEESCEE
T ss_pred             EEcHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEECCCCC--EEEEECCEEE
Confidence            45677899999999999887                   99999999999988766666665433453  3579999999


Q ss_pred             eccCCCch-hhcc-cC
Q 005134          231 GTDGAGST-VRKL-VG  244 (712)
Q Consensus       231 gADG~~S~-VR~~-lg  244 (712)
                      .|+|.+|. +++. ++
T Consensus       204 ~AtG~~s~~l~~~~l~  219 (501)
T 2qcu_A          204 NATGPWVKQFFDDGMH  219 (501)
T ss_dssp             ECCGGGHHHHHHHHTC
T ss_pred             ECCChhHHHHHHHhcc
Confidence            99999986 5554 54

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.28  E-value=1.1e-10  Score=136.21  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+....+...|.+.+++.|+                   +|+++++|++++.+++++.|+..   +|.    +++||.||
T Consensus       413 ~v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~----~i~Ad~VV  466 (676)
T 3ps9_A          413 WLCPAELTRNVLELAQQQGL-------------------QIYYQYQLQNFSRKDDCWLLNFA---GDQ----QATHSVVV  466 (676)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEETTEEEEEET---TSC----EEEESEEE
T ss_pred             eeCHHHHHHHHHHHHHhCCC-------------------EEEeCCeeeEEEEeCCeEEEEEC---CCC----EEECCEEE
Confidence            45567888899999998887                   99999999999999888655432   332    58999999


Q ss_pred             eccCCCch-hhcccCCC
Q 005134          231 GTDGAGST-VRKLVGID  246 (712)
Q Consensus       231 gADG~~S~-VR~~lgi~  246 (712)
                      .|+|..|. +.+.++++
T Consensus       467 lAtG~~s~~l~~~~~lp  483 (676)
T 3ps9_A          467 LANGHQISRFSQTSTLP  483 (676)
T ss_dssp             ECCGGGGGCSTTTTTCS
T ss_pred             ECCCcchhccccccCCc
Confidence            99999986 45445544

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.27  E-value=8.2e-11  Score=129.87  Aligned_cols=62  Identities=8%  Similarity=0.162  Sum_probs=50.6

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc---EEEEEEEcCCeEE-EEEEeccCCceeeEEEEe
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH---ECVSVSATDQCIN-VIASFLKEGKCTERNIQC  226 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~---~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~a  226 (712)
                      .+....+...|.+.+++.|+                   +|++++   +|+++..++++++ |++.   +|    .+++|
T Consensus       157 ~~~~~~~~~~L~~~a~~~Gv-------------------~i~~~t~~~~V~~i~~~~~~v~gV~t~---~G----~~i~A  210 (438)
T 3dje_A          157 WAHARNALVAAAREAQRMGV-------------------KFVTGTPQGRVVTLIFENNDVKGAVTA---DG----KIWRA  210 (438)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEEESTTTTCEEEEEEETTEEEEEEET---TT----EEEEC
T ss_pred             EecHHHHHHHHHHHHHhcCC-------------------EEEeCCcCceEEEEEecCCeEEEEEEC---CC----CEEEC
Confidence            44556788899999998887                   999999   9999999888876 5442   45    26899


Q ss_pred             cEEEeccCCCch
Q 005134          227 NILIGTDGAGST  238 (712)
Q Consensus       227 d~VVgADG~~S~  238 (712)
                      |.||.|+|++|.
T Consensus       211 d~VV~AtG~~s~  222 (438)
T 3dje_A          211 ERTFLCAGASAG  222 (438)
T ss_dssp             SEEEECCGGGGG
T ss_pred             CEEEECCCCChh
Confidence            999999999985

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.27  E-value=1.6e-09  Score=123.29  Aligned_cols=75  Identities=13%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~V  229 (712)
                      .++...|...|.+.+.+.|+                   +++++++|+++..+++++. |++.+..+|+  ..+++|++|
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~-------------------~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~--~~~i~A~~V  224 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGA-------------------VALNYMKVESFIYDQGKVVGVVAKDRLTDT--THTIYAKKV  224 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEEETTEEEEEEEEETTTCC--EEEEEEEEE
T ss_pred             eEcHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEEcCCeEEEEEEEEcCCCc--eEEEECCEE
Confidence            56677888899999998887                   9999999999999888754 6665433443  468999999


Q ss_pred             EeccCCCc-hhhcccCCC
Q 005134          230 IGTDGAGS-TVRKLVGID  246 (712)
Q Consensus       230 VgADG~~S-~VR~~lgi~  246 (712)
                      |.|+|.+| .+++.+|+.
T Consensus       225 V~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          225 VNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             EECCGGGHHHHHHTTTCC
T ss_pred             EECCCcchHHHHHhcCCC
Confidence            99999998 678887764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.26  E-value=3.5e-11  Score=125.05  Aligned_cols=143  Identities=14%  Similarity=0.219  Sum_probs=92.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCC--Cc-----eeecCHhHHHHHHhhhcHHHHHHhcCCCcc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTH--PQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~~~~--~r-----a~~i~~rtmeilr~l~Gl~d~l~~~~~~~~  113 (712)
                      .++||+||||||+||++|+.|+++ |++|+||||.+.+...  .+     ...+.....++|+++ |+         +..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~-G~---------~~~  107 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEI-GV---------AYD  107 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHH-TC---------CCE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHc-CC---------Ccc
Confidence            458999999999999999999998 9999999998765311  11     112222333444443 32         110


Q ss_pred             ccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEE
Q 005134          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREIL  192 (712)
Q Consensus       114 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~  192 (712)
                      .          .+..                    ........+...|.+++.+ .|+                   +++
T Consensus       108 ~----------~~~~--------------------~~~~~~~~~~~~l~~~~~~~~gv-------------------~i~  138 (284)
T 1rp0_A          108 E----------QDTY--------------------VVVKHAALFTSTIMSKLLARPNV-------------------KLF  138 (284)
T ss_dssp             E----------CSSE--------------------EEESCHHHHHHHHHHHHHTSTTE-------------------EEE
T ss_pred             c----------CCCE--------------------EEecCHHHHHHHHHHHHHhcCCC-------------------EEE
Confidence            0          0000                    0112345677778887765 465                   999


Q ss_pred             eCcEEEEEEEcCCeEE-EEEEec----c--CC-ceeeEEEEecEEEeccCCCchhhccc
Q 005134          193 MGHECVSVSATDQCIN-VIASFL----K--EG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (712)
Q Consensus       193 ~g~~v~~v~~~~~~v~-v~v~~~----~--~g-~~~~~~i~ad~VVgADG~~S~VR~~l  243 (712)
                      ++++|+++..+++.+. +.+...    +  ++ .....+++||+||.|+|.+|.++...
T Consensus       139 ~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          139 NAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             ETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             cCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            9999999998877653 333210    1  11 01235799999999999999987653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.23  E-value=3.1e-11  Score=136.17  Aligned_cols=69  Identities=14%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       154 q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ...+...|.+.+.+.|+                   +|+++++|++++.+++.+. +++   .+|+    +++||+||.|
T Consensus       219 ~~~l~~~L~~~l~~~Gv-------------------~I~~~t~V~~I~~~~~~v~gV~l---~~G~----~i~Ad~VVlA  272 (549)
T 3nlc_A          219 LVTMIEKMRATIIELGG-------------------EIRFSTRVDDLHMEDGQITGVTL---SNGE----EIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEESSSBEEEEEE---TTSC----EEECSCEEEC
T ss_pred             HHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEEEeCCEEEEEEE---CCCC----EEECCEEEEC
Confidence            35677778888888887                   9999999999998877654 333   2453    6899999999


Q ss_pred             cCCCch----hhcccCCCcc
Q 005134          233 DGAGST----VRKLVGIDLV  248 (712)
Q Consensus       233 DG~~S~----VR~~lgi~~~  248 (712)
                      +|.+|.    ..+.+|+.+.
T Consensus       273 ~G~~s~~~~~~l~~~Gi~~~  292 (549)
T 3nlc_A          273 VGHSARDTFEMLHERGVYME  292 (549)
T ss_dssp             CCTTCHHHHHHHHHTTCCCE
T ss_pred             CCCChhhHHHHHHHcCCCcc
Confidence            999994    4455676643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.22  E-value=2.6e-10  Score=133.24  Aligned_cols=71  Identities=10%  Similarity=0.063  Sum_probs=54.0

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+....+...|.+.+.+.|+                   +|+++++|++++.+++++.|...   +|.   .+++||.||
T Consensus       408 ~v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~---~~i~Ad~VV  462 (689)
T 3pvc_A          408 WLCPSDLTHALMMLAQQNGM-------------------TCHYQHELQRLKRIDSQWQLTFG---QSQ---AAKHHATVI  462 (689)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEECSSSEEEEEC----CC---CCEEESEEE
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEeCCeEeEEEEeCCeEEEEeC---CCc---EEEECCEEE
Confidence            34567788889999988887                   99999999999998888755442   331   158999999


Q ss_pred             eccCCCch-hhcccCCC
Q 005134          231 GTDGAGST-VRKLVGID  246 (712)
Q Consensus       231 gADG~~S~-VR~~lgi~  246 (712)
                      .|+|..|. +.+.++++
T Consensus       463 lAtG~~s~~l~~~~~lp  479 (689)
T 3pvc_A          463 LATGHRLPEWEQTHHLP  479 (689)
T ss_dssp             ECCGGGTTCSTTTTTSC
T ss_pred             ECCCcchhccccccCCc
Confidence            99999986 44444443

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.19  E-value=1.5e-10  Score=122.19  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=92.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCC-------CCceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~-------~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~  112 (712)
                      .++||+||||||+||++|+.|+++  |++|+||||.+.+..       ......+.+...+.|+++ |+         +.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~-Gv---------~~  147 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEV-GV---------PY  147 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHH-TC---------CC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHc-CC---------cc
Confidence            468999999999999999999998  999999999876531       112233344555566555 43         11


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                      ..          .|. +.                   .......+...|.+.+.+. ++                   ++
T Consensus       148 ~~----------~G~-~~-------------------~~~~~~d~~~~L~~~a~~~~gV-------------------~i  178 (344)
T 3jsk_A          148 ED----------EGD-YV-------------------VVKHAALFTSTVLSKVLQRPNV-------------------KL  178 (344)
T ss_dssp             EE----------CSS-EE-------------------EESCHHHHHHHHHHHHHTCTTE-------------------EE
T ss_pred             cc----------cCC-eE-------------------EEecHHHHHHHHHHHHHhCCCC-------------------EE
Confidence            00          010 00                   0112345668888888774 54                   99


Q ss_pred             EeCcEEEEEEEcCC-------------------eEE-EEEEec---cCCc----eeeEEEEecEEEeccCCCchhhccc
Q 005134          192 LMGHECVSVSATDQ-------------------CIN-VIASFL---KEGK----CTERNIQCNILIGTDGAGSTVRKLV  243 (712)
Q Consensus       192 ~~g~~v~~v~~~~~-------------------~v~-v~v~~~---~~g~----~~~~~i~ad~VVgADG~~S~VR~~l  243 (712)
                      +++++++++..+++                   .|. |.+...   ..+.    ....+|+|++||.|+|..|+|++.+
T Consensus       179 ~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          179 FNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             EETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             EeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            99999999987653                   221 111110   1121    0235899999999999999977655

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.16  E-value=1.6e-10  Score=126.11  Aligned_cols=142  Identities=18%  Similarity=0.229  Sum_probs=86.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCceee----cC--------Hh-HHHHHHhh--h
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHF----IN--------NR-YALVFRKL--D   99 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~------~~ra~~----i~--------~r-tmeilr~l--~   99 (712)
                      |.++||+||||||+|+++|+.|+++|.+|+||||.+.+..      .++...    ..        +. ....+..+  .
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            3569999999999999999999999999999999875411      000000    00        00 00111111  0


Q ss_pred             cHHHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccc
Q 005134          100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE  179 (712)
Q Consensus       100 Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~  179 (712)
                      .+.+.+...+.+...        ...|.                .-|.   . ....+...|.+.+++.|+         
T Consensus        82 ~~~~~~~~~Gi~~~~--------~~~g~----------------~~p~---~-~~~~l~~~L~~~~~~~Gv---------  124 (401)
T 2gqf_A           82 DFISLVAEQGITYHE--------KELGQ----------------LFCD---E-GAEQIVEMLKSECDKYGA---------  124 (401)
T ss_dssp             HHHHHHHHTTCCEEE--------CSTTE----------------EEET---T-CTHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHhCCCceEE--------CcCCE----------------EccC---C-CHHHHHHHHHHHHHHCCC---------
Confidence            111111222211100        00000                0010   1 456777888888888887         


Q ss_pred             cccccccccceEEeCcEEEEEEEc----CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          180 GLHNHLLQGREILMGHECVSVSAT----DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       180 ~~~~~~~~~~~v~~g~~v~~v~~~----~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                                +++++++++++..+    ++++.++.   +++     +++||+||.|+|.+|
T Consensus       125 ----------~i~~~~~v~~i~~~~~g~~~~~~v~~---~~g-----~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          125 ----------KILLRSEVSQVERIQNDEKVRFVLQV---NST-----QWQCKNLIVATGGLS  168 (401)
T ss_dssp             ----------EEECSCCEEEEEECCSCSSCCEEEEE---TTE-----EEEESEEEECCCCSS
T ss_pred             ----------EEEeCCEEEEEEcccCcCCCeEEEEE---CCC-----EEECCEEEECCCCcc
Confidence                      99999999999876    55555433   122     589999999999999

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.15  E-value=5.7e-11  Score=129.95  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEE---------EEEEcCCeEEEEEEeccCCceee
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV---------SVSATDQCINVIASFLKEGKCTE  221 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~---------~v~~~~~~v~v~v~~~~~g~~~~  221 (712)
                      .+....+...|.+.+.+.|+                   +++++++|+         +++.+++.+.+..   ++|    
T Consensus       168 ~v~~~~l~~~L~~~~~~~Gv-------------------~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~---~~g----  221 (405)
T 3c4n_A          168 TYRPGSLALLAAQQAIGQGA-------------------GLLLNTRAELVPGGVRLHRLTVTNTHQIVVH---ETR----  221 (405)
T ss_dssp             EECHHHHHHHHHHHHHTTTC-------------------EEECSCEEEEETTEEEEECBCC-------CB---CCE----
T ss_pred             EEcHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEeccccccccceEeeCCeEEEEE---CCc----
Confidence            45667789999999988887                   899999999         8887776653321   122    


Q ss_pred             EEEEecEEEeccCCCc-hhhc-ccCCCc
Q 005134          222 RNIQCNILIGTDGAGS-TVRK-LVGIDL  247 (712)
Q Consensus       222 ~~i~ad~VVgADG~~S-~VR~-~lgi~~  247 (712)
                       +++||+||.|+|++| .+++ .+|+..
T Consensus       222 -~i~a~~VV~A~G~~s~~l~~~~~g~~~  248 (405)
T 3c4n_A          222 -QIRAGVIIVAAGAAGPALVEQGLGLHT  248 (405)
T ss_dssp             -EEEEEEEEECCGGGHHHHHHHHHCCCC
T ss_pred             -EEECCEEEECCCccHHHHHHHhcCCCC
Confidence             689999999999999 6887 787653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.14  E-value=4.6e-10  Score=124.71  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCCCCCC---------------ceeecCHhHHHHHHhhhc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAFSTHP---------------QAHFINNRYALVFRKLDG  100 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G------i~v~lvEr~~~~~~~~---------------ra~~i~~rtmeilr~l~G  100 (712)
                      +.+||+|||||++||++|+.|+++|      ++|+|+|+++.+--..               ......+..+++++++ |
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g   82 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDL-G   82 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHT-T
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHc-C
Confidence            3579999999999999999999999      9999999986542110               0122356788889888 8


Q ss_pred             HHHHH
Q 005134          101 LAEEI  105 (712)
Q Consensus       101 l~d~l  105 (712)
                      +.+.+
T Consensus        83 l~~~~   87 (470)
T 3i6d_A           83 LEHLL   87 (470)
T ss_dssp             CCTTE
T ss_pred             Cccee
Confidence            76544

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.14  E-value=4.5e-10  Score=123.27  Aligned_cols=35  Identities=34%  Similarity=0.514  Sum_probs=32.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            48999999999999999999999999999998764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.12  E-value=6.3e-10  Score=118.56  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~~~   78 (712)
                      .||+|||||++||++|+.|++   +|++|+||||.+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            589999999999999999999   99999999998653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.12  E-value=4.9e-10  Score=112.72  Aligned_cols=134  Identities=18%  Similarity=0.165  Sum_probs=88.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      +++||+||||||+|+.+|+.|+++|++|+|||+.....  +  ..+++.       +.++         .          
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~--G--~~~~~~-------~~~~---------~----------   51 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV--M--MPFLPP-------KPPF---------P----------   51 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT--T--CCSSCC-------CSCC---------C----------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC--C--cccCcc-------cccc---------c----------
Confidence            45899999999999999999999999999999984210  0  001110       0000         0          


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeCcEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                         .+..+..++     +  . ..|      ++..+...|.+.+++. |+                   +++ +++++++
T Consensus        52 ---~~~~~~~~~-----d--~-~g~------~~~~~~~~l~~~~~~~~gv-------------------~i~-~~~v~~i   94 (232)
T 2cul_A           52 ---PGSLLERAY-----D--P-KDE------RVWAFHARAKYLLEGLRPL-------------------HLF-QATATGL   94 (232)
T ss_dssp             ---TTCHHHHHC-----C--T-TCC------CHHHHHHHHHHHHHTCTTE-------------------EEE-ECCEEEE
T ss_pred             ---hhhHHhhhc-----c--C-CCC------CHHHHHHHHHHHHHcCCCc-------------------EEE-EeEEEEE
Confidence               000000000     0  0 011      5778889999998886 65                   777 5799999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcc
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLV  248 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~  248 (712)
                      ..+++.+.. +.. .+|+    +++||+||.|+|.+|..+..+|....
T Consensus        95 ~~~~~~v~~-v~~-~~g~----~i~a~~VV~A~G~~s~~~~~~G~~~~  136 (232)
T 2cul_A           95 LLEGNRVVG-VRT-WEGP----PARGEKVVLAVGSFLGARLFLGGVVE  136 (232)
T ss_dssp             EEETTEEEE-EEE-TTSC----CEECSEEEECCTTCSSCEEEETTEEE
T ss_pred             EEeCCEEEE-EEE-CCCC----EEECCEEEECCCCChhhceecCCccC
Confidence            888777532 222 2442    68999999999999999988776543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.10  E-value=4.7e-10  Score=128.07  Aligned_cols=162  Identities=16%  Similarity=0.164  Sum_probs=96.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ceeecCHhHHHHHHhhhcH-----------------
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGL-----------------  101 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~--ra~~i~~rtmeilr~l~Gl-----------------  101 (712)
                      ..++||||||||++||++|+.|+++|.+|+||||.+.+....  .+..++....+..+.+ |+                 
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAH-GVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHh-CCCCCHHHHHHHHHHhcCC
Confidence            456899999999999999999999999999999998653211  1111111111111111 11                 


Q ss_pred             -----------------HHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHH
Q 005134          102 -----------------AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ  164 (712)
Q Consensus       102 -----------------~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~  164 (712)
                                       .+.+.+.+.+...      .....|..           +.....|. ...+....+...|.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~------~~~~~g~~-----------~~r~~~~~-~~~~~~~~l~~~L~~~  259 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLESLGANLDD------LKRSGGAR-----------VDRTHRPH-GGKSSGPEIIDTLRKA  259 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE------EECCTTCS-----------SCCEEECS-SSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhcCCcccc------ccccCCCC-----------CCceeecC-CCCCCHHHHHHHHHHH
Confidence                             1111111211100      00000000           00000010 0113456788899999


Q ss_pred             HHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC-CeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcc
Q 005134          165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (712)
Q Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~-~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~  242 (712)
                      +.+.|+                   +|+++++|+++..++ +.|+ |++.. .+|+  ..+++||.||.|+|..|.+|+.
T Consensus       260 ~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~--~~~i~A~~VVlAtGg~s~~~~~  317 (566)
T 1qo8_A          260 AKEQGI-------------------DTRLNSRVVKLVVNDDHSVVGAVVHG-KHTG--YYMIGAKSVVLATGGYGMNKEM  317 (566)
T ss_dssp             HHHTTC-------------------CEECSEEEEEEEECTTSBEEEEEEEE-TTTE--EEEEEEEEEEECCCCCTTCHHH
T ss_pred             HHhcCC-------------------EEEeCCEEEEEEECCCCcEEEEEEEe-CCCc--EEEEEcCEEEEecCCcccCHHH
Confidence            988887                   999999999999887 6554 44442 2342  4579999999999999987654


Q ss_pred             c
Q 005134          243 V  243 (712)
Q Consensus       243 l  243 (712)
                      +
T Consensus       318 ~  318 (566)
T 1qo8_A          318 I  318 (566)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.07  E-value=1.1e-09  Score=117.97  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=47.8

Q ss_pred             cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      +....+...|.+.+.+.|+                   +++++++|++++.+++++.++.   .+|     +++||.||.
T Consensus       146 ~~~~~l~~~l~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~---~~g-----~~~a~~vV~  198 (372)
T 2uzz_A          146 LRSELAIKTWIQLAKEAGC-------------------AQLFNCPVTAIRHDDDGVTIET---ADG-----EYQAKKAIV  198 (372)
T ss_dssp             EEHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECSSSEEEEE---SSC-----EEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEEcCCEEEEEE---CCC-----eEEcCEEEE
Confidence            3445778888888888887                   9999999999998887765543   233     489999999


Q ss_pred             ccCCCch
Q 005134          232 TDGAGST  238 (712)
Q Consensus       232 ADG~~S~  238 (712)
                      |+|++|.
T Consensus       199 a~G~~s~  205 (372)
T 2uzz_A          199 CAGTWVK  205 (372)
T ss_dssp             CCGGGGG
T ss_pred             cCCccHH
Confidence            9999874

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.06  E-value=1.1e-09  Score=125.12  Aligned_cols=160  Identities=15%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc--eeecCHhHHHHHHhhhcH-----------------
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ--AHFINNRYALVFRKLDGL-----------------  101 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~r--a~~i~~rtmeilr~l~Gl-----------------  101 (712)
                      ..++||||||||++||++|+.|+++|.+|+||||.+.......  +..++.......+++ |+                 
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAK-KITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHh-CCCCCHHHHHHHHHHhcCC
Confidence            3468999999999999999999999999999999986532110  111111001111222 21                 


Q ss_pred             -----------------HHHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHH
Q 005134          102 -----------------AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ  164 (712)
Q Consensus       102 -----------------~d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~  164 (712)
                                       .+.+.+.+.+...      .....|..           +.....+.. .......+...|.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~------~~~~~g~~-----------~~r~~~~~~-g~~~g~~l~~~L~~~  264 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLTD------VGMMGGAS-----------VNRAHRPTG-GAGVGAHVVQVLYDN  264 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE------EECCTTCS-----------SCCEEESTT-TCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCcc------CcccCCcC-----------CCeeEecCC-CCCCHHHHHHHHHHH
Confidence                             0111111111100      00000100           000000000 012346788889999


Q ss_pred             HHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC-CeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhc
Q 005134          165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRK  241 (712)
Q Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~-~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~  241 (712)
                      +++.|+                   +|+++++|+++..++ +.|+ |++.. .+|+  ..+|+||.||.|+|..|..++
T Consensus       265 ~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~--~~~i~a~~VVlAtGg~~~n~~  321 (571)
T 1y0p_A          265 AVKRNI-------------------DLRMNTRGIEVLKDDKGTVKGILVKG-MYKG--YYWVKADAVILATGGFAKNNE  321 (571)
T ss_dssp             HHHTTC-------------------EEESSEEEEEEEECTTSCEEEEEEEE-TTTE--EEEEECSEEEECCCCCTTCHH
T ss_pred             HHhcCC-------------------EEEeCCEeeEeEEcCCCeEEEEEEEe-CCCc--EEEEECCeEEEeCCCcccCHH
Confidence            988887                   999999999999876 5554 44442 1342  457999999999999987554

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.05  E-value=8.5e-10  Score=117.46  Aligned_cols=131  Identities=15%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .++||+||||||+||++|+.|+++|++|+|||+.+.+.    +...+        .++++     ....+.         
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g----g~~~~--------~~~~~-----~~~~~~---------   55 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPG----GAWQH--------AWHSL-----HLFSPA---------   55 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSS----GGGGG--------SCTTC-----BCSSCG---------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC----CcccC--------CCCCc-----EecCch---------
Confidence            45899999999999999999999999999999987542    11000        00000     000000         


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                            ....+.     .+.  .........++..+...|.+.+++.++                   +++++++|++++
T Consensus        56 ------~~~~~~-----~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i~  103 (357)
T 4a9w_A           56 ------GWSSIP-----GWP--MPASQGPYPARAEVLAYLAQYEQKYAL-------------------PVLRPIRVQRVS  103 (357)
T ss_dssp             ------GGSCCS-----SSC--CCCCSSSSCBHHHHHHHHHHHHHHTTC-------------------CEECSCCEEEEE
T ss_pred             ------hhhhCC-----CCC--CCCCccCCCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEE
Confidence                  000000     000  001112234577888889988888887                   899999999999


Q ss_pred             EcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 ATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .+++.++ ++.   +++     ++++|+||.|+|.+|.
T Consensus       104 ~~~~~~~~v~~---~~g-----~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A          104 HFGERLRVVAR---DGR-----QWLARAVISATGTWGE  133 (357)
T ss_dssp             EETTEEEEEET---TSC-----EEEEEEEEECCCSGGG
T ss_pred             ECCCcEEEEEe---CCC-----EEEeCEEEECCCCCCC
Confidence            9888765 442   233     6899999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.04  E-value=5.4e-10  Score=118.24  Aligned_cols=125  Identities=18%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .+.+||+||||||+||++|+.|+++|++|+|||+.+.....+.+....         .          .           
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~---------~----------~-----------   69 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT---------T----------T-----------   69 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG---------S----------S-----------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc---------c----------h-----------
Confidence            456899999999999999999999999999999977332222211000         0          0           


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                             .+..+             |.....+....+...|.+.+.+.++                   ++++++ ++++
T Consensus        70 -------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~gv-------------------~i~~~~-v~~i  109 (338)
T 3itj_A           70 -------EIENF-------------PGFPDGLTGSELMDRMREQSTKFGT-------------------EIITET-VSKV  109 (338)
T ss_dssp             -------EECCS-------------TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECSC-EEEE
T ss_pred             -------hhccc-------------CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEEeE-EEEE
Confidence                   00000             0001124456778888888888876                   899998 9999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +.+++.++++.....++    .++.+|+||.|.|.++..
T Consensus       110 ~~~~~~~~v~~~~~~~~----~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          110 DLSSKPFKLWTEFNEDA----EPVTTDAIILATGASAKR  144 (338)
T ss_dssp             ECSSSSEEEEETTCSSS----CCEEEEEEEECCCEEECC
T ss_pred             EEcCCEEEEEEEecCCC----cEEEeCEEEECcCCCcCC
Confidence            98888877655321223    368999999999997643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.02  E-value=2.3e-09  Score=113.47  Aligned_cols=127  Identities=21%  Similarity=0.295  Sum_probs=86.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+||||||+|+++|+.|+++|++|+|||+.+...                    |....   . .+..    .  
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~---~-~~~~----~--   52 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG--------------------GQLTA---L-YPEK----Y--   52 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC--------------------HHHHH---T-CTTS----E--
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC--------------------Ceeec---c-CCCc----e--
Confidence            456899999999999999999999999999999986531                    11100   0 1110    0  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                              +...             +. ...+....+...|.+.+.+.+.                   +++++++|+++
T Consensus        53 --------~~~~-------------~~-~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i   91 (335)
T 2zbw_A           53 --------IYDV-------------AG-FPKVYAKDLVKGLVEQVAPFNP-------------------VYSLGERAETL   91 (335)
T ss_dssp             --------ECCS-------------TT-CSSEEHHHHHHHHHHHHGGGCC-------------------EEEESCCEEEE
T ss_pred             --------eecc-------------CC-CCCCCHHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEE
Confidence                    0000             00 0013345666777777777665                   88999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCC
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI  245 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi  245 (712)
                      +.+++.+++++.   +|.    ++++|+||.|+|.+|...+.+++
T Consensus        92 ~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~~~p~~~~i  129 (335)
T 2zbw_A           92 EREGDLFKVTTS---QGN----AYTAKAVIIAAGVGAFEPRRIGA  129 (335)
T ss_dssp             EEETTEEEEEET---TSC----EEEEEEEEECCTTSEEEECCCCC
T ss_pred             EECCCEEEEEEC---CCC----EEEeCEEEECCCCCCCCCCCCCC
Confidence            988776555432   342    68999999999999866655543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.02  E-value=1.1e-09  Score=121.18  Aligned_cols=70  Identities=10%  Similarity=-0.056  Sum_probs=53.4

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      ..++..+.+.|.+.+.+.+.                   .++++++|++++.++++++|++....+|+. .+++++|+||
T Consensus       111 ~~~~~~l~~~l~~~~~~~~~-------------------~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~-~~~~~~d~VV  170 (447)
T 2gv8_A          111 FPHRHTIQEYQRIYAQPLLP-------------------FIKLATDVLDIEKKDGSWVVTYKGTKAGSP-ISKDIFDAVS  170 (447)
T ss_dssp             SCBHHHHHHHHHHHHGGGGG-------------------GEECSEEEEEEEEETTEEEEEEEESSTTCC-EEEEEESEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhC-------------------eEEeCCEEEEEEeCCCeEEEEEeecCCCCe-eEEEEeCEEE
Confidence            35677888888888877654                   789999999999988888888764222420 2468999999


Q ss_pred             eccCCCchhh
Q 005134          231 GTDGAGSTVR  240 (712)
Q Consensus       231 gADG~~S~VR  240 (712)
                      .|+|.+|.-+
T Consensus       171 vAtG~~s~p~  180 (447)
T 2gv8_A          171 ICNGHYEVPY  180 (447)
T ss_dssp             ECCCSSSSBC
T ss_pred             ECCCCCCCCC
Confidence            9999987533

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.02  E-value=3.2e-09  Score=116.40  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|+.|+++|.+|+|||+++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            48999999999999999999999999999998765

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.00  E-value=1.6e-09  Score=116.19  Aligned_cols=125  Identities=16%  Similarity=0.286  Sum_probs=86.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..+||+||||||+||++|+.|+++|++|+|||+.+.+.                    |....+    .+..    .   
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~~----~~~~----~---   61 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG--------------------GQLAAL----YPEK----H---   61 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHT----CTTS----E---
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC--------------------Cccccc----CCCc----c---
Confidence            45899999999999999999999999999999986531                    111000    1110    0   


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                             +...             |. ...+.+..+...|.+.+.+.++                   +++++++|++++
T Consensus        62 -------~~~~-------------~~-~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i~  101 (360)
T 3ab1_A           62 -------IYDV-------------AG-FPEVPAIDLVESLWAQAERYNP-------------------DVVLNETVTKYT  101 (360)
T ss_dssp             -------ECCS-------------TT-CSSEEHHHHHHHHHHHHHTTCC-------------------EEECSCCEEEEE
T ss_pred             -------cccC-------------CC-CCCCCHHHHHHHHHHHHHHhCC-------------------EEEcCCEEEEEE
Confidence                   0000             00 0123456677778888877776                   889999999999


Q ss_pred             EcCC-eEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccC
Q 005134          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG  244 (712)
Q Consensus       202 ~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lg  244 (712)
                      .+++ .+++++.   +|.    ++++|+||.|+|.+|..++.++
T Consensus       102 ~~~~~~~~v~~~---~g~----~~~~~~li~AtG~~~~~~~~~~  138 (360)
T 3ab1_A          102 KLDDGTFETRTN---TGN----VYRSRAVLIAAGLGAFEPRKLP  138 (360)
T ss_dssp             ECTTSCEEEEET---TSC----EEEEEEEEECCTTCSCCBCCCG
T ss_pred             ECCCceEEEEEC---CCc----EEEeeEEEEccCCCcCCCCCCC
Confidence            8765 5555542   442    6899999999999987666554

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.99  E-value=4.5e-09  Score=120.54  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             hhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       154 q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ...+...|.+.+.+.|.                  ++|+++++++++..+++.|. +.+....+|+  ..+++|+.||.|
T Consensus       133 g~~l~~~L~~~~~~~gn------------------v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~--~~~i~A~~VVlA  192 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQ------------------IQRFDEHFVLDILVDDGHVRGLVAMNMMEGT--LVQIRANAVVMA  192 (602)
T ss_dssp             HHHHHHHHHHHHTTCTT------------------EEEEETEEEEEEEEETTEEEEEEEEETTTTE--EEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEEEeCCEEEEEEEEEcCCCc--EEEEEcCeEEEC
Confidence            35788888888887771                  39999999999998777543 3333323453  457999999999


Q ss_pred             cCCCchhhcccC
Q 005134          233 DGAGSTVRKLVG  244 (712)
Q Consensus       233 DG~~S~VR~~lg  244 (712)
                      +|..|.++....
T Consensus       193 tGg~s~~~~~~~  204 (602)
T 1kf6_A          193 TGGAGRVYRYNT  204 (602)
T ss_dssp             CCCCGGGSSSBS
T ss_pred             CCCCcccccCcC
Confidence            999999986653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.98  E-value=5.2e-08  Score=109.13  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=46.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------ceee---cCHhHHHHHHhhhcHHHH
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHF---INNRYALVFRKLDGLAEE  104 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~------------ra~~---i~~rtmeilr~l~Gl~d~  104 (712)
                      ++||+|||||++||++|..|+++|++|+|+|+++.+--+-            .++.   ..++.+++++++ |+.++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~l-gl~~~  114 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRY-KMHNA  114 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHT-TCTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHc-CCcce
Confidence            4799999999999999999999999999999997542111            1122   246777888877 77543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.98  E-value=5.1e-09  Score=119.11  Aligned_cols=154  Identities=16%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCCc---eeecCH-hHHHHHHhhhcHHHHHHh-cCCCcccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQ---AHFINN-RYALVFRKLDGLAEEIER-SQPPVDLW  115 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~-~~~~~r---a~~i~~-rtmeilr~l~Gl~d~l~~-~~~~~~~~  115 (712)
                      .++||+|||||++|+++|+.|++.|.+|+|||+... ....++   ..++.. ...+.++.++|+...+.. .+      
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~g------  100 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAG------  100 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHE------
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcc------
Confidence            458999999999999999999999999999999842 222222   112221 122233333222111111 00      


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEeC
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                      ..+.......|..                .......+++..+...|.+.+++ .|+                   ++ ++
T Consensus       101 i~f~~l~~~kgpa----------------v~~~r~~~Dr~~~~~~L~e~Le~~~GV-------------------~I-~~  144 (651)
T 3ces_A          101 IQFRILNASKGPA----------------VRATRAQADRVLYRQAVRTALENQPNL-------------------MI-FQ  144 (651)
T ss_dssp             EEEEEESTTSCGG----------------GCEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EE
T ss_pred             cchhhhhcccCcc----------------cccchhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EE
Confidence            0011100000000                00011346777888889998887 465                   77 67


Q ss_pred             cEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcccC
Q 005134          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG  244 (712)
Q Consensus       195 ~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lg  244 (712)
                      ++|+.+..+++.|. |.+   .+|    .+++||.||.|+|.+|..+...|
T Consensus       145 ~~V~~L~~e~g~V~GV~t---~dG----~~I~Ad~VVLATGt~s~~~~i~G  188 (651)
T 3ces_A          145 QAVEDLIVENDRVVGAVT---QMG----LKFRAKAVVLTVGTFLDGKIHIG  188 (651)
T ss_dssp             CCEEEEEESSSBEEEEEE---TTS----EEEEEEEEEECCSTTTCCEEECC
T ss_pred             EEEEEEEecCCEEEEEEE---CCC----CEEECCEEEEcCCCCccCccccC
Confidence            79999988777653 332   244    36899999999999987765543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.96  E-value=4.9e-09  Score=118.71  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||++||++|+.|++ |.+|+||||.+..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            567999999999999999999999 9999999998754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.94  E-value=2.2e-08  Score=112.67  Aligned_cols=38  Identities=26%  Similarity=0.432  Sum_probs=35.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            46799999999999999999999999999999999865

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.93  E-value=1.2e-08  Score=115.63  Aligned_cols=152  Identities=15%  Similarity=0.165  Sum_probs=91.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCc---eeecCH-hHHHHHHhhhcHHHHHHh-cCCCcccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQ---AHFINN-RYALVFRKLDGLAEEIER-SQPPVDLW  115 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~-~~~~~~r---a~~i~~-rtmeilr~l~Gl~d~l~~-~~~~~~~~  115 (712)
                      .++||+|||||++|+++|+.|++.|++|+|||+.. .....++   ..++.. ...+.++.++|+...+.. .+.     
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi-----  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGI-----  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEE-----
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccc-----
Confidence            45999999999999999999999999999999984 2222121   112221 222333333222222111 110     


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceEEeC
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                       .+.......|...                ......+++..+...|.+.+++. |+                   ++ ++
T Consensus       101 -~f~~l~~~kGpav----------------~~~r~~~Dr~~~~~~L~~~Le~~~GV-------------------eI-~~  143 (637)
T 2zxi_A          101 -QFKMLNTRKGKAV----------------QSPRAQADKKRYREYMKKVCENQENL-------------------YI-KQ  143 (637)
T ss_dssp             -EEEEESTTSCGGG----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EE
T ss_pred             -ceeecccccCccc----------------cchhhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EE
Confidence             0111000000000                00112456778888999988874 55                   77 57


Q ss_pred             cEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhcc
Q 005134          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (712)
Q Consensus       195 ~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~  242 (712)
                      ++|+++..+++.|. |.+   .+|.    +++|+.||.|+|..|..+..
T Consensus       144 ~~Vt~L~~e~g~V~GV~t---~dG~----~i~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          144 EEVVDIIVKNNQVVGVRT---NLGV----EYKTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             SCEEEEEESSSBEEEEEE---TTSC----EEECSEEEECCTTCBTCEEE
T ss_pred             eEEEEEEecCCEEEEEEE---CCCc----EEEeCEEEEccCCCccCcee
Confidence            89999988777654 332   2452    68999999999999876654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.93  E-value=1e-07  Score=108.65  Aligned_cols=73  Identities=19%  Similarity=0.083  Sum_probs=54.3

Q ss_pred             cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEE
Q 005134          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      +.-..+...|.+.+.+.|+                   +|+++++|+++..+++.|. |++.+..+|+  ..+|+||.||
T Consensus       185 v~~~~l~~~l~~~a~~~Ga-------------------~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~--~~~i~A~~VV  243 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGA-------------------YLVSKMKAVGFLYEGDQIVGVKARDLLTDE--VIEIKAKLVI  243 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEETTEEEEEEEEETTTCC--EEEEEBSCEE
T ss_pred             EchHHHHHHHHHHHHHcCC-------------------eEEeccEEEEEEEeCCEEEEEEEEEcCCCC--EEEEEcCEEE
Confidence            4455677778888888887                   9999999999998877643 5554332343  3479999999


Q ss_pred             eccCCCc-hhhcccCC
Q 005134          231 GTDGAGS-TVRKLVGI  245 (712)
Q Consensus       231 gADG~~S-~VR~~lgi  245 (712)
                      .|.|++| .+++.+++
T Consensus       244 ~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          244 NTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCGGGHHHHHTTCCS
T ss_pred             ECCChhHHHHHHhhcc
Confidence            9999998 46666554

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.91  E-value=1e-08  Score=107.62  Aligned_cols=144  Identities=19%  Similarity=0.261  Sum_probs=87.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCC-------CceeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTH-------PQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~-------~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~  112 (712)
                      .++||+||||||+||++|+.|+++  |.+|+||||.+.+...       .+...+.+...+.|..+ |         .+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~-G---------v~~  133 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQEL-E---------IPY  133 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHT-T---------CCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhh-C---------ccc
Confidence            457999999999999999999999  9999999998765211       11122222233333333 2         111


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                      ..          .|..                    ........+...|++++.+. |+                   ++
T Consensus       134 ~~----------~g~~--------------------~~~~~~~~~~~~L~~~a~~~~GV-------------------~i  164 (326)
T 2gjc_A          134 ED----------EGDY--------------------VVVKHAALFISTVLSKVLQLPNV-------------------KL  164 (326)
T ss_dssp             EE----------CSSE--------------------EEESCHHHHHHHHHHHHHTSTTE-------------------EE
T ss_pred             cc----------CCCe--------------------EEEcchHHHHHHHHHHHHHhcCc-------------------EE
Confidence            00          0100                    00112346677888888775 54                   99


Q ss_pred             EeCcEEEEEEEcC----C--eEE-EEEEec---cCC----ceeeEEEEe---------------cEEEeccCCCchhhcc
Q 005134          192 LMGHECVSVSATD----Q--CIN-VIASFL---KEG----KCTERNIQC---------------NILIGTDGAGSTVRKL  242 (712)
Q Consensus       192 ~~g~~v~~v~~~~----~--~v~-v~v~~~---~~g----~~~~~~i~a---------------d~VVgADG~~S~VR~~  242 (712)
                      +.+++++++..++    +  .|+ |.+...   .+|    .....+|+|               ++||.|+|..|++.+.
T Consensus       165 ~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~  244 (326)
T 2gjc_A          165 FNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAF  244 (326)
T ss_dssp             ETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSH
T ss_pred             EecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHH
Confidence            9999999998773    2  332 222110   111    001357999               9999999999998876


Q ss_pred             cC
Q 005134          243 VG  244 (712)
Q Consensus       243 lg  244 (712)
                      +.
T Consensus       245 ~~  246 (326)
T 2gjc_A          245 CA  246 (326)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.90  E-value=7.9e-09  Score=114.81  Aligned_cols=152  Identities=17%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCCCCCCceeecCHhHH--HHHHhhhcHHHHHHhcCCCccc
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDL  114 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G-----i~v~lvEr~~~~~~~~ra~~i~~rtm--eilr~l~Gl~d~l~~~~~~~~~  114 (712)
                      ..+||+||||||+||++|+.|+++|     ++|+||||.+....++.. .+....+  ..++.+       .....|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~-~~~~~~~~~~~~~~l-------~~~~~p~~~  100 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNT-LVSQSELQISFLKDL-------VSLRNPTSP  100 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGG-CCSSCBCSSCTTSSS-------STTTCTTCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCC-CCCCCcCCcchhhcc-------ccccCCCCC
Confidence            4579999999999999999999999     999999999865422210 0000000  000000       000000000


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeC
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g  194 (712)
                      +....|... .+..         ..+    ........++..+...|...+.+.+.                   +++++
T Consensus       101 ~~~~~~l~~-~~~~---------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~i~~~  147 (463)
T 3s5w_A          101 YSFVNYLHK-HDRL---------VDF----INLGTFYPCRMEFNDYLRWVASHFQE-------------------QSRYG  147 (463)
T ss_dssp             TSHHHHHHH-TTCH---------HHH----HHHCCSCCBHHHHHHHHHHHHTTCTT-------------------TEEES
T ss_pred             CChhHhhhh-cCce---------eec----ccccCCCCCHHHHHHHHHHHHHHcCC-------------------eEEeC
Confidence            000000000 0000         000    00111234677888888888777765                   89999


Q ss_pred             cEEEEEEEc---CCe--EEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          195 HECVSVSAT---DQC--INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       195 ~~v~~v~~~---~~~--v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++|++++.+   +..  +++++..   |+++++++++|+||.|.|...
T Consensus       148 ~~V~~i~~~~~~~~~~~~~V~~~~---g~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          148 EEVLRIEPMLSAGQVEALRVISRN---ADGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEE---TTSCEEEEEESEEEECCCCEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEec---CCCceEEEEeCEEEECCCCCC
Confidence            999999876   332  3455442   222345899999999999844

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.90  E-value=1.1e-08  Score=113.13  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE---------------cCCeEEEEEEecc
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA---------------TDQCINVIASFLK  215 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~---------------~~~~v~v~v~~~~  215 (712)
                      .+....+...|.+.+.+.|+                   +++++++|++++.               +++++. .+.. +
T Consensus       177 ~~~~~~l~~~L~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~-~V~t-~  235 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGAGV-------------------EFIFGRRVVGVELKPRVELGIEGEPLPWQEARAS-AAVL-S  235 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEE-EEEE-T
T ss_pred             EEcHHHHHHHHHHHHHhCCC-------------------EEEcCCeEEEEEecccccccccccccccCCCceE-EEEe-C
Confidence            35566888889999988887                   9999999999987               555542 2222 2


Q ss_pred             CCceeeEEE--EecEEEeccCCCch-hhcccCCC
Q 005134          216 EGKCTERNI--QCNILIGTDGAGST-VRKLVGID  246 (712)
Q Consensus       216 ~g~~~~~~i--~ad~VVgADG~~S~-VR~~lgi~  246 (712)
                      +|     ++  +||.||.|.|++|. +.+.+|+.
T Consensus       236 ~g-----~i~~~Ad~VV~AtG~~s~~l~~~~g~~  264 (448)
T 3axb_A          236 DG-----TRVEVGEKLVVAAGVWSNRLLNPLGID  264 (448)
T ss_dssp             TS-----CEEEEEEEEEECCGGGHHHHHGGGTCC
T ss_pred             CC-----EEeecCCEEEECCCcCHHHHHHHcCCC
Confidence            34     47  99999999999987 77777654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.90  E-value=1.2e-08  Score=116.02  Aligned_cols=150  Identities=17%  Similarity=0.264  Sum_probs=90.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCC---CceeecCHhHHHHHHhh---hcHHHHHH-hcCCCc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTH---PQAHFINNRYALVFRKL---DGLAEEIE-RSQPPV  112 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~-~~~~---~ra~~i~~rtmeilr~l---~Gl~d~l~-~~~~~~  112 (712)
                      +.++||+|||||++|+++|+.|+++|.+|+|||+... ....   +...++  ....+++.+   +|+..... ..+.  
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGi--a~~~lv~el~al~g~~~~~~d~~gi--   94 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGV--AKGQITREIDALGGEMGKAIDATGI--   94 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECH--HHHHHHHHHHHHTCSHHHHHHHHEE--
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhh--hHHHHHHHHHhcccHHHHHHHhcCC--
Confidence            4469999999999999999999999999999999852 2222   211222  122333333   22221111 1110  


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhc-CceeeccCccccccccccccceE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                          .+.......|..               . ......+++..+...|.+.+++. |+                   ++
T Consensus        95 ----~f~~l~~~kgpa---------------v-~~~r~~~Dr~~l~~~L~~~l~~~~GV-------------------~I  135 (641)
T 3cp8_A           95 ----QFRMLNRSKGPA---------------M-HSPRAQADKTQYSLYMRRIVEHEPNI-------------------DL  135 (641)
T ss_dssp             ----EEEEECSSSCTT---------------T-CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE
T ss_pred             ----chhhcccccCcc---------------c-cchhhhcCHHHHHHHHHHHHHhCCCC-------------------EE
Confidence                011100000000               0 00113567788889998888875 54                   77


Q ss_pred             EeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCchhhc
Q 005134          192 LMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRK  241 (712)
Q Consensus       192 ~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~  241 (712)
                       ++.+|+.+..+++.|. |.+   .+|.    +++||.||.|+|.++..+-
T Consensus       136 -~~~~V~~L~~d~g~V~GV~t---~~G~----~i~Ad~VVLATG~~s~~~i  178 (641)
T 3cp8_A          136 -LQDTVIGVSANSGKFSSVTV---RSGR----AIQAKAAILACGTFLNGLI  178 (641)
T ss_dssp             -EECCEEEEEEETTEEEEEEE---TTSC----EEEEEEEEECCTTCBTCEE
T ss_pred             -EeeEEEEEEecCCEEEEEEE---CCCc----EEEeCEEEECcCCCCCccc
Confidence             4558999988877765 433   2452    6899999999999876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.89  E-value=3e-09  Score=112.54  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+||||||+|+++|+.|+++|++|+|||+.........+.            +       ...       .    
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~------------~-------~~~-------~----   55 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------L-------TTT-------T----   55 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------G-------GGC-------S----
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce------------e-------eec-------c----
Confidence            456899999999999999999999999999999821110000000            0       000       0    


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                             .+...             |.....+.+..+...|.+.+.+.++                   ++++++ ++++
T Consensus        56 -------~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~~~-v~~i   95 (333)
T 1vdc_A           56 -------DVENF-------------PGFPEGILGVELTDKFRKQSERFGT-------------------TIFTET-VTKV   95 (333)
T ss_dssp             -------EECCS-------------TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECCC-CCEE
T ss_pred             -------ccccC-------------CCCccCCCHHHHHHHHHHHHHHCCC-------------------EEEEeE-EEEE
Confidence                   00000             0001123456777778888887776                   888887 8888


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +.+++.+++++    ++    .++++|+||.|+|.++..
T Consensus        96 ~~~~~~~~v~~----~~----~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           96 DFSSKPFKLFT----DS----KAILADAVILAIGAVAKR  126 (333)
T ss_dssp             ECSSSSEEEEC----SS----EEEEEEEEEECCCEEECC
T ss_pred             EEcCCEEEEEE----CC----cEEEcCEEEECCCCCcCC
Confidence            88777766553    33    368999999999998743

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.89  E-value=1.7e-08  Score=114.53  Aligned_cols=142  Identities=19%  Similarity=0.185  Sum_probs=86.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+|||||++||++|+.|+++|++|+||||.+...    +      +.. ....+|+.     ...+.        
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G----G------~w~-~~~~pg~~-----~d~~~--------   69 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG----G------VWY-WNRYPGAR-----CDIES--------   69 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC----T------HHH-HCCCTTCB-----CSSCT--------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC----C------ccc-ccCCCcee-----ecccc--------
Confidence            456899999999999999999999999999999987642    0      000 00011110     00000        


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                             .+..... .+.....  .+......++..+.+.|.+.+++.+.                 ...++++++|+++
T Consensus        70 -------~~~~~~f-~~~~~~~--~~~~~~~~~~~~i~~yl~~~~~~~~l-----------------~~~i~~~~~V~~~  122 (542)
T 1w4x_A           70 -------IEYCYSF-SEEVLQE--WNWTERYASQPEILRYINFVADKFDL-----------------RSGITFHTTVTAA  122 (542)
T ss_dssp             -------TTSSCCS-CHHHHHH--CCCCBSSCBHHHHHHHHHHHHHHTTG-----------------GGGEECSCCEEEE
T ss_pred             -------ccccccc-Chhhhhc--cCcccccCCHHHHHHHHHHHHHHcCC-----------------CceEEcCcEEEEE
Confidence                   0000000 0000000  00011235677888888887777653                 1379999999999


Q ss_pred             EEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       201 ~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +.+++  .++|++.   +|+    +++||+||.|+|..|.-+
T Consensus       123 ~~~~~~~~w~V~~~---~G~----~~~ad~vV~AtG~~s~p~  157 (542)
T 1w4x_A          123 AFDEATNTWTVDTN---HGD----RIRARYLIMASGQLSVPQ  157 (542)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSCCCCC
T ss_pred             EEcCCCCeEEEEEC---CCC----EEEeCEEEECcCCCCCCC
Confidence            88764  4555442   453    689999999999988543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.87  E-value=1.1e-08  Score=122.18  Aligned_cols=70  Identities=14%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+....+...|.+.+.+.|+                   +|+++++|++++.+++++.. +.. ++|     +++||+||
T Consensus       147 ~v~p~~l~~~L~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~v~~-V~t-~~G-----~i~Ad~VV  200 (830)
T 1pj5_A          147 LASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTG-VQT-ADG-----VIPADIVV  200 (830)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEE-EEE-TTE-----EEECSEEE
T ss_pred             eEcHHHHHHHHHHHHHHcCC-------------------EEECCceEEEEEEeCCEEEE-EEE-CCc-----EEECCEEE
Confidence            44666888999999998887                   99999999999988777532 221 233     58999999


Q ss_pred             eccCCCchh-hcccCCC
Q 005134          231 GTDGAGSTV-RKLVGID  246 (712)
Q Consensus       231 gADG~~S~V-R~~lgi~  246 (712)
                      .|+|++|.. .+.+|+.
T Consensus       201 ~AaG~~s~~l~~~~g~~  217 (830)
T 1pj5_A          201 SCAGFWGAKIGAMIGMA  217 (830)
T ss_dssp             ECCGGGHHHHHHTTTCC
T ss_pred             ECCccchHHHHHHhCCC
Confidence            999999853 4455654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.86  E-value=1.3e-08  Score=113.14  Aligned_cols=157  Identities=15%  Similarity=0.189  Sum_probs=89.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCC---EEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcc--cc
Q 005134           44 VPVLIVGAGPVGLVLSILLTK---LGIK---CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD--LW  115 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar---~Gi~---v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~--~~  115 (712)
                      +||+||||||+||++|..|++   .|++   |+||||.+.+.    +......      .. |+.    ..+.+..  .+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G----G~w~~~~------~~-g~~----~~g~~~~~~~y   67 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG----GQWNYTW------RT-GLD----ENGEPVHSSMY   67 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC----GGGSCCS------CC-SBC----TTSSBCCCCCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC----CEeecCC------CC-Ccc----ccCCCCcCccc
Confidence            689999999999999999999   9999   99999986541    1000000      00 100    0000100  00


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                      ...  ..+ .......+...   .+...........+++..+...|.+.+++.++.                 ..+++++
T Consensus        68 ~~l--~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~-----------------~~i~~~~  124 (464)
T 2xve_A           68 RYL--WSN-GPKECLEFADY---TFDEHFGKPIASYPPREVLWDYIKGRVEKAGVR-----------------KYIRFNT  124 (464)
T ss_dssp             TTC--BCS-SCGGGTCBTTB---CHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCG-----------------GGEECSE
T ss_pred             cch--hhc-CChhhcccCCC---CCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCc-----------------ceEEeCC
Confidence            000  000 00000000000   000000000123456788888898888887760                 1289999


Q ss_pred             EEEEEEEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          196 ECVSVSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       196 ~v~~v~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +|++++.+++  .++|++....+|+  ..++.+|+||.|+|.+|.-+
T Consensus       125 ~V~~v~~~~~~~~~~V~~~~~~~g~--~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          125 AVRHVEFNEDSQTFTVTVQDHTTDT--IYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTTE--EEEEEESEEEECCCSSSSBC
T ss_pred             EEEEEEEcCCCCcEEEEEEEcCCCc--eEEEEcCEEEECCCCCCCCc
Confidence            9999998766  6677766422342  35789999999999876544

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.85  E-value=3.8e-08  Score=112.55  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc-CCeEE-EEEEeccCCceeeEEEEecEEEec
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~-~~~v~-v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ..+...|.+.+.+.|+                   +|+++++++++..+ ++.|. |.+.+..+|+  ..+++|+.||.|
T Consensus       143 ~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~--~~~i~A~~VVlA  201 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHT-------------------TIFSEWYALDLVKNQDGAVVGCTALCIETGE--VVYFKARATVLA  201 (588)
T ss_dssp             HHHHHHHHHHHHHTTC-------------------EEEETEEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEeCcEEEEEEECCCCEEEEEEEEEcCCCe--EEEEEcCEEEEC
Confidence            5677888888888776                   99999999999886 44443 4444323443  457999999999


Q ss_pred             cCCCchh
Q 005134          233 DGAGSTV  239 (712)
Q Consensus       233 DG~~S~V  239 (712)
                      +|..|.+
T Consensus       202 tGg~~~~  208 (588)
T 2wdq_A          202 TGGAGRI  208 (588)
T ss_dssp             CCCCGGG
T ss_pred             CCCCccc
Confidence            9998864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.85  E-value=7.4e-08  Score=111.26  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      ..+...|.+.+.+.|+                   +|+++++++++..+++.+. +.+....+|+  ...++|+.||.|.
T Consensus       158 ~~l~~~L~~~a~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~--~~~i~A~~VVlAT  216 (660)
T 2bs2_A          158 HTMLFAVANECLKLGV-------------------SIQDRKEAIALIHQDGKCYGAVVRDLVTGD--IIAYVAKGTLIAT  216 (660)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------EEECSEEEEEEEEETTEEEEEEEEETTTCC--EEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEECcEEEEEEecCCEEEEEEEEECCCCc--EEEEEcCEEEEcc
Confidence            3577888888888776                   9999999999987766443 3333323453  4579999999999


Q ss_pred             CCCchh
Q 005134          234 GAGSTV  239 (712)
Q Consensus       234 G~~S~V  239 (712)
                      |..+.+
T Consensus       217 GG~~~~  222 (660)
T 2bs2_A          217 GGYGRI  222 (660)
T ss_dssp             CCCGGG
T ss_pred             Ccchhh
Confidence            999865

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.85  E-value=1.5e-08  Score=106.04  Aligned_cols=115  Identities=21%  Similarity=0.334  Sum_probs=80.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      +||+||||||+|+++|+.|+++|+ +|+|||+..     ..+...+                   .. ..          
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-----~gg~~~~-------------------~~-~~----------   46 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITG-------------------SS-EI----------   46 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-----TTCGGGG-------------------CS-CB----------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-----CCccccc-------------------cc-cc----------
Confidence            689999999999999999999999 999999852     1111000                   00 00          


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                             ...             |.....+++..+...|.+.+.+.++                   ++++ +++++++.
T Consensus        47 -------~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~-~~v~~i~~   86 (311)
T 2q0l_A           47 -------ENY-------------PGVKEVVSGLDFMQPWQEQCFRFGL-------------------KHEM-TAVQRVSK   86 (311)
T ss_dssp             -------CCS-------------TTCCSCBCHHHHHHHHHHHHHTTSC-------------------EEEC-SCEEEEEE
T ss_pred             -------ccC-------------CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEEE
Confidence                   000             0001134567788888888887776                   7777 78999988


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +++.+++++.   +|.    ++++|+||.|+|.++.+.
T Consensus        87 ~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           87 KDSHFVILAE---DGK----TFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             ETTEEEEEET---TSC----EEEEEEEEECCCEEECCC
T ss_pred             cCCEEEEEEc---CCC----EEECCEEEECCCCCCCCC
Confidence            8877665542   342    689999999999877544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.84  E-value=1.1e-08  Score=107.78  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..+||+||||||+||++|+.|+++|++|+|||+.+...                    |.....    .|..        
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------G~~~~~----~~~~--------   53 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG--------------------GQLSAL----YPEK--------   53 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHH----CTTS--------
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC--------------------ceehhc----CCCc--------
Confidence            45899999999999999999999999999999987531                    221100    0100        


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                            .+...  .   .         ...++...+...|.+.+.+.++                   +++++++|++++
T Consensus        54 ------~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~i~   94 (332)
T 3lzw_A           54 ------YIYDV--A---G---------FPKIRAQELINNLKEQMAKFDQ-------------------TICLEQAVESVE   94 (332)
T ss_dssp             ------EECCS--T---T---------CSSEEHHHHHHHHHHHHTTSCC-------------------EEECSCCEEEEE
T ss_pred             ------eEecc--C---C---------CCCCCHHHHHHHHHHHHHHhCC-------------------cEEccCEEEEEE
Confidence                  00000  0   0         0123456777888888877766                   899999999999


Q ss_pred             EcCC-eEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       202 ~~~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      .+++ .+.+++.   +|     ++.+|+||.|.|.+|...
T Consensus        95 ~~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~~~p  126 (332)
T 3lzw_A           95 KQADGVFKLVTN---EE-----THYSKTVIITAGNGAFKP  126 (332)
T ss_dssp             ECTTSCEEEEES---SE-----EEEEEEEEECCTTSCCEE
T ss_pred             ECCCCcEEEEEC---CC-----EEEeCEEEECCCCCcCCC
Confidence            8876 5555542   33     389999999999976433

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.84  E-value=5.6e-08  Score=108.23  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC-------C--------ceeecCHhHHHHHHhhhcHHHHH
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH-------P--------QAHFINNRYALVFRKLDGLAEEI  105 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~~~~-------~--------ra~~i~~rtmeilr~l~Gl~d~l  105 (712)
                      ++||+|||||++||++|+.|+++|  ++|+|+|+++...-+       +        ......+..+++++++ |+.+++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~l-g~~~~~   82 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAI-GLGEKL   82 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHT-TCGGGE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHc-CCcceE
Confidence            579999999999999999999999  999999997653211       0        0122356788999998 886554

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.84  E-value=1.1e-08  Score=115.84  Aligned_cols=141  Identities=18%  Similarity=0.231  Sum_probs=87.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~La-r~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      +.++||+|||||++|+++|+.|+ +.|++|+||||++...    +      +.. ....+|+         ..+....  
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~G----G------tw~-~~~ypg~---------~~d~~s~--   63 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPG----G------TWY-WNRYPGA---------LSDTESH--   63 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSC----T------HHH-HCCCTTC---------EEEEEGG--
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCC----C------ccc-ccCCCCc---------eecCCcc--
Confidence            45689999999999999999999 9999999999987542    0      000 0001111         0000000  


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                               ...... .. .... ..+......++..+...|.+.+++.++                 ...++++++|++
T Consensus        64 ---------~~~~~~-~~-~~~~-~~~~~~~~~~~~ei~~~l~~~~~~~g~-----------------~~~i~~~~~V~~  114 (540)
T 3gwf_A           64 ---------LYRFSF-DR-DLLQ-ESTWKTTYITQPEILEYLEDVVDRFDL-----------------RRHFKFGTEVTS  114 (540)
T ss_dssp             ---------GSSCCS-CH-HHHH-HCCCSBSEEEHHHHHHHHHHHHHHTTC-----------------GGGEEESCCEEE
T ss_pred             ---------eeeecc-cc-cccc-CCCCcccCCCHHHHHHHHHHHHHHcCC-----------------cceeEeccEEEE
Confidence                     000000 00 0000 001111245678888888888888765                 127899999999


Q ss_pred             EEEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          200 VSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       200 v~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++.+++  .++|++.   +|+    +++||+||.|+|..|.-
T Consensus       115 i~~~~~~~~~~V~~~---~G~----~i~ad~lV~AtG~~s~p  149 (540)
T 3gwf_A          115 ALYLDDENLWEVTTD---HGE----VYRAKYVVNAVGLLSAI  149 (540)
T ss_dssp             EEEETTTTEEEEEET---TSC----EEEEEEEEECCCSCCSB
T ss_pred             EEEeCCCCEEEEEEc---CCC----EEEeCEEEECCcccccC
Confidence            998876  5555442   453    68999999999998743

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.83  E-value=4.9e-07  Score=99.16  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|+.|+++|.+|+|||+++..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            69999999999999999999999999999997643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.82  E-value=1.8e-08  Score=105.68  Aligned_cols=113  Identities=15%  Similarity=0.198  Sum_probs=78.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      +++||+||||||+||++|+.|+++|++|+||||.  +   +                 |...   .  .+.         
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~---g-----------------g~~~---~--~~~---------   57 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P---G-----------------GQLT---E--AGI---------   57 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T---T-----------------GGGG---G--CCE---------
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C---C-----------------Ceec---c--ccc---------
Confidence            3589999999999999999999999999999987  1   0                 1000   0  000         


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                             ...+             |. ...+....+...|.+.+.+.++                   ++++ +++++++
T Consensus        58 -------~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i~   96 (323)
T 3f8d_A           58 -------VDDY-------------LG-LIEIQASDMIKVFNKHIEKYEV-------------------PVLL-DIVEKIE   96 (323)
T ss_dssp             -------ECCS-------------TT-STTEEHHHHHHHHHHHHHTTTC-------------------CEEE-SCEEEEE
T ss_pred             -------cccc-------------CC-CCCCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEE
Confidence                   0000             00 0013456677778888888776                   7788 8999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .+++.++++..   +|.    ++.+|+||.|.|....
T Consensus        97 ~~~~~~~v~~~---~g~----~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           97 NRGDEFVVKTK---RKG----EFKADSVILGIGVKRR  126 (323)
T ss_dssp             EC--CEEEEES---SSC----EEEEEEEEECCCCEEC
T ss_pred             ecCCEEEEEEC---CCC----EEEcCEEEECcCCCCc
Confidence            88777666553   332    6899999999998843

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.81  E-value=6.4e-08  Score=110.45  Aligned_cols=67  Identities=10%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcC-CeEE-EEEEeccCCceeeEEEEecEEEe
Q 005134          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       154 q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~-~~v~-v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      ...+...|.+.+.+.|+                   +|+++++++++..++ +.|+ |.+.. .+|+  ..+|+||.||.
T Consensus       254 g~~l~~~L~~~~~~~gv-------------------~i~~~t~v~~l~~~~~g~v~GV~~~~-~~G~--~~~i~A~~VVl  311 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGT-------------------DIRLNSRVVRILEDASGKVTGVLVKG-EYTG--YYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEC--CCEEEEEEEE-TTTE--EEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHHcCC-------------------eEEecCEEEEEEECCCCeEEEEEEEe-CCCc--EEEEEcCEEEE
Confidence            55788889999988887                   999999999998776 5543 44442 2342  45799999999


Q ss_pred             ccCCCchhhcc
Q 005134          232 TDGAGSTVRKL  242 (712)
Q Consensus       232 ADG~~S~VR~~  242 (712)
                      |+|..|..++.
T Consensus       312 AtGg~~~~~~~  322 (572)
T 1d4d_A          312 AAGGFAKNNER  322 (572)
T ss_dssp             CCCCCTTCHHH
T ss_pred             eCCCCccCHHH
Confidence            99999976543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.80  E-value=2.3e-07  Score=103.95  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            47999999999999999999999999999999765

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.79  E-value=4.4e-07  Score=102.29  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3579999999999999999999999999999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.79  E-value=2.7e-08  Score=112.84  Aligned_cols=140  Identities=16%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+|||||++|+++|+.|++.|++|+||||++...    +      +.. ....+|+.     ...+...+.    
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G----G------tw~-~~~ypg~~-----~dv~s~~y~----   78 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVG----G------VWY-WNRYPGAR-----CDVESIDYS----   78 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC----T------HHH-HCCCTTCB-----CSSCTTTSS----
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCC----C------ccc-cCCCCCce-----eCCCchhcc----
Confidence            456899999999999999999999999999999987542    0      000 00011210     000100000    


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                                 ... .. +... .........++..+...|.+.+++.++                 ...++++++|+++
T Consensus        79 -----------~~f-~~-~~~~-~~~~~~~~~~~~ei~~yl~~~~~~~g~-----------------~~~i~~~~~V~~i  127 (549)
T 4ap3_A           79 -----------YSF-SP-ELEQ-EWNWSEKYATQPEILAYLEHVADRFDL-----------------RRDIRFDTRVTSA  127 (549)
T ss_dssp             -----------CCS-CH-HHHH-HCCCSSSSCBHHHHHHHHHHHHHHTTC-----------------GGGEECSCCEEEE
T ss_pred             -----------ccc-cc-cccc-CCCCccCCCCHHHHHHHHHHHHHHcCC-----------------CccEEECCEEEEE
Confidence                       000 00 0000 000111245678888888888888775                 1278999999999


Q ss_pred             EEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +.+++  .++|++.   +|+    +++||+||.|+|..|.
T Consensus       128 ~~~~~~~~w~V~~~---~G~----~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A          128 VLDEEGLRWTVRTD---RGD----EVSARFLVVAAGPLSN  160 (549)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSEEE
T ss_pred             EEcCCCCEEEEEEC---CCC----EEEeCEEEECcCCCCC
Confidence            88776  4444442   453    6899999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.79  E-value=3.8e-08  Score=101.86  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      +||+||||||+||++|+.|+++|++|+|||+.+....                 +            +..  .       
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~-----------------~------------~~~--~-------   44 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR-----------------F------------ASH--S-------   44 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG-----------------G------------CSC--C-------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc-----------------c------------chh--h-------
Confidence            7999999999999999999999999999999651100                 0            000  0       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                       .             .+     +. ...++...+...|.+.+.+.+.                  ++++ ..++++++.+
T Consensus        45 -~-------------~~-----~~-~~~~~~~~~~~~~~~~~~~~~~------------------v~~~-~~~v~~i~~~   85 (297)
T 3fbs_A           45 -H-------------GF-----LG-QDGKAPGEIIAEARRQIERYPT------------------IHWV-EGRVTDAKGS   85 (297)
T ss_dssp             -C-------------SS-----TT-CTTCCHHHHHHHHHHHHTTCTT------------------EEEE-ESCEEEEEEE
T ss_pred             -c-------------CC-----cC-CCCCCHHHHHHHHHHHHHhcCC------------------eEEE-EeEEEEEEEc
Confidence             0             00     00 0123445677777777776532                  2554 4589999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      ++++++++.   +|+    ++++|+||.|.|.++...
T Consensus        86 ~~~~~v~~~---~g~----~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           86 FGEFIVEID---GGR----RETAGRLILAMGVTDELP  115 (297)
T ss_dssp             TTEEEEEET---TSC----EEEEEEEEECCCCEEECC
T ss_pred             CCeEEEEEC---CCC----EEEcCEEEECCCCCCCCC
Confidence            888766653   442    689999999999976543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.79  E-value=7.6e-08  Score=111.11  Aligned_cols=173  Identities=15%  Similarity=0.077  Sum_probs=94.5

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCCc--e-eecC----HhHHH------------
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHPQ--A-HFIN----NRYAL------------   93 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~------Gi~v~lvEr~~~~~~~~r--a-~~i~----~rtme------------   93 (712)
                      +...++||||||||++||++|+.|+++      |.+|+||||......+..  + .+++    ..+.+            
T Consensus        18 ~~~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~~~~g   97 (662)
T 3gyx_A           18 IVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMG   97 (662)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTT
T ss_pred             cceEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHHhcCC
Confidence            345679999999999999999999998      999999999865422211  1 1221    11111            


Q ss_pred             --------HHHh-hhcHHHHHHhcCCCccccceeEeeecCCCCeee-----eecCCCccccccccCCccccccChhHHHH
Q 005134           94 --------VFRK-LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILG-----SVDHMQPQDFEKVVSPVSVAHFSQYKLNK  159 (712)
Q Consensus        94 --------ilr~-l~Gl~d~l~~~~~~~~~~~~~~~~~~~~G~~l~-----~~~~~~~~~~~~~~~p~~~~~i~q~~Le~  159 (712)
                              .+-+ .+...+.+.+.+.+....       ...|....     .+...................+....+.+
T Consensus        98 l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~-------~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~  170 (662)
T 3gyx_A           98 LVREDLIYDLGRHVDDSVHLFEEWGLPVWIK-------DEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKV  170 (662)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCBCEE-------CSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHcCCCceec-------CCCCccccchhhhccccccccCccccccceecccCCHHHHHH
Confidence                    1110 011122333444332110       01111110     00000000000000000011233456788


Q ss_pred             HHHHHHHhc--CceeeccCccccccccccccceEEeCcEEEEEEEcCC---eEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134          160 LLLKQLEKL--NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ---CIN-VIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       160 ~L~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~---~v~-v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      .|.+.+.+.  |+                   +|+.++.++++..+++   .|. |.+....+|+  ..+|+|+.||.|.
T Consensus       171 ~L~~~a~~~~~gV-------------------~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVLAT  229 (662)
T 3gyx_A          171 IVAEAAKNALGQD-------------------RIIERIFIVKLLLDKNTPNRIAGAVGFNLRANE--VHIFKANAMVVAC  229 (662)
T ss_dssp             HHHHHHHHHHCTT-------------------TEECSEEECCCEECSSSTTBEEEEEEEESSSSC--EEEEECSEEEECC
T ss_pred             HHHHHHHhcCCCc-------------------EEEEceEEEEEEEeCCccceEEEEEEEEcCCCc--EEEEEeCEEEECC
Confidence            888888876  66                   8999999999887766   443 2233323443  4679999999999


Q ss_pred             CCCchh
Q 005134          234 GAGSTV  239 (712)
Q Consensus       234 G~~S~V  239 (712)
                      |..+.+
T Consensus       230 GG~g~~  235 (662)
T 3gyx_A          230 GGAVNV  235 (662)
T ss_dssp             CCBCSS
T ss_pred             Cccccc
Confidence            998854

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.77  E-value=3.9e-08  Score=103.37  Aligned_cols=113  Identities=19%  Similarity=0.193  Sum_probs=77.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .++||+||||||+|+++|+.|+++|++|+||||.. +    .+.            + ..      . ...         
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----gg~------------~-~~------~-~~~---------   60 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-A----GGL------------T-AE------A-PLV---------   60 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-T----TGG------------G-GG------C-SCB---------
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-C----Ccc------------c-cc------c-chh---------
Confidence            45899999999999999999999999999999942 1    110            0 00      0 000         


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                              ...             |.. ..+....+...|.+.+.+.++                   ++++ .++++++
T Consensus        61 --------~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i~   98 (319)
T 3cty_A           61 --------ENY-------------LGF-KSIVGSELAKLFADHAANYAK-------------------IREG-VEVRSIK   98 (319)
T ss_dssp             --------CCB-------------TTB-SSBCHHHHHHHHHHHHHTTSE-------------------EEET-CCEEEEE
T ss_pred             --------hhc-------------CCC-cccCHHHHHHHHHHHHHHcCC-------------------EEEE-eeEEEEE
Confidence                    000             000 123445667777777777776                   7777 6899998


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .+++.+++..    ++.    ++.+|+||.|+|.++.
T Consensus        99 ~~~~~~~v~~----~~~----~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           99 KTQGGFDIET----NDD----TYHAKYVIITTGTTHK  127 (319)
T ss_dssp             EETTEEEEEE----SSS----EEEEEEEEECCCEEEC
T ss_pred             EeCCEEEEEE----CCC----EEEeCEEEECCCCCcc
Confidence            8777765543    232    5899999999998764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.77  E-value=8.4e-08  Score=110.01  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      ..+...|.+.+.+.|+                   +|+++++++++..+++.|. |.+.+..+|+  ..+++|+.||.|.
T Consensus       155 ~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~--~~~i~A~~VVlAT  213 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDT-------------------SYFVEYFALDLLMENGECRGVIALCIEDGT--IHRFRAKNTVIAT  213 (621)
T ss_dssp             HHHHHHHHHHHTTSCC-------------------EEEETEEEEEEEEETTEEEEEEEEETTTCC--EEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEEceEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCeEEECC
Confidence            4677888888887776                   9999999999988766543 3343323453  4579999999999


Q ss_pred             CCCchh
Q 005134          234 GAGSTV  239 (712)
Q Consensus       234 G~~S~V  239 (712)
                      |..|.+
T Consensus       214 GG~~~~  219 (621)
T 2h88_A          214 GGYGRT  219 (621)
T ss_dssp             CCCGGG
T ss_pred             Cccccc
Confidence            999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.76  E-value=4.7e-08  Score=103.03  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      .++||+||||||+||++|+.|+++|++|+|||+.. +    .+...          .         .. ..         
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----gg~~~----------~---------~~-~~---------   52 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-P----GGQIA----------W---------SE-EV---------   52 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-T----TGGGG----------G---------CS-CB---------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-C----Ccccc----------c---------cc-cc---------
Confidence            46899999999999999999999999999999972 1    11000          0         00 00         


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                              ...             |.....+++..+...|.+.+.+.|+                   ++++ .++++++
T Consensus        53 --------~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~i~   91 (325)
T 2q7v_A           53 --------ENF-------------PGFPEPIAGMELAQRMHQQAEKFGA-------------------KVEM-DEVQGVQ   91 (325)
T ss_dssp             --------CCS-------------TTCSSCBCHHHHHHHHHHHHHHTTC-------------------EEEE-CCEEEEE
T ss_pred             --------ccC-------------CCCCCCCCHHHHHHHHHHHHHHcCC-------------------EEEe-eeEEEEE
Confidence                    000             0000124556777888888888876                   7777 5888888


Q ss_pred             Ec--CCe-EEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 AT--DQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~--~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .+  ++. ++++..   +|.    ++++|+||.|+|.++.
T Consensus        92 ~~~~~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           92 HDATSHPYPFTVRG---YNG----EYRAKAVILATGADPR  124 (325)
T ss_dssp             ECTTSSSCCEEEEE---SSC----EEEEEEEEECCCEEEC
T ss_pred             eccCCCceEEEEEC---CCC----EEEeCEEEECcCCCcC
Confidence            76  443 555543   342    6899999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.74  E-value=4.4e-08  Score=110.98  Aligned_cols=141  Identities=13%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +.++||+|||||++|+++|+.|++.|++|+||||++....          +.. ....+|+.     ...+...      
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG----------tw~-~~~yPg~~-----~d~~~~~------   64 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG----------TWY-WNRYPGCR-----LDTESYA------   64 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT----------HHH-HCCCTTCB-----CSSCHHH------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC----------ccc-cCCCCcee-----ecCchhh------
Confidence            4468999999999999999999999999999999875420          000 00011100     0000000      


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                               ..... .+..+.  .........++..+...|.+.+++.+.                 ...++++++|+++
T Consensus        65 ---------y~~~f-~~~~~~--~~~~~~~~~~~~ei~~yl~~~~~~~~l-----------------~~~i~~~~~V~~~  115 (545)
T 3uox_A           65 ---------YGYFA-LKGIIP--EWEWSENFASQPEMLRYVNRAADAMDV-----------------RKHYRFNTRVTAA  115 (545)
T ss_dssp             ---------HCHHH-HTTSST--TCCCSBSSCBHHHHHHHHHHHHHHHTC-----------------GGGEECSCCEEEE
T ss_pred             ---------ccccc-Cccccc--CCCccccCCCHHHHHHHHHHHHHHcCC-----------------cCcEEECCEEEEE
Confidence                     00000 000000  000011234677888888888887765                 1278999999999


Q ss_pred             EEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       201 ~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +.+++  .++|++.   +|    .+++||+||.|+|..|.-
T Consensus       116 ~~~~~~~~w~V~~~---~G----~~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A          116 RYVENDRLWEVTLD---NE----EVVTCRFLISATGPLSAS  149 (545)
T ss_dssp             EEEGGGTEEEEEET---TT----EEEEEEEEEECCCSCBC-
T ss_pred             EEeCCCCEEEEEEC---CC----CEEEeCEEEECcCCCCCC
Confidence            87765  3444432   45    268999999999987643

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.73  E-value=1.2e-07  Score=105.45  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ||||||||++||++|+.|+++|.+|+||||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999998

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.72  E-value=6.4e-08  Score=101.55  Aligned_cols=115  Identities=17%  Similarity=0.309  Sum_probs=78.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      |+++||+||||||+|+++|+.|+++|++|+|||+..     +.+.            + -       .....        
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-----~gg~------------~-~-------~~~~~--------   49 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-----KGGQ------------L-T-------TTTEV--------   49 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-----TTGG------------G-G-------GCSBC--------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-----CCce------------E-e-------cchhh--------
Confidence            456899999999999999999999999999999641     1111            0 0       00000        


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                               ...             |.....+....+...|.+.+.+.++                   ++++++ ++.+
T Consensus        50 ---------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-v~~i   87 (320)
T 1trb_A           50 ---------ENW-------------PGDPNDLTGPLLMERMHEHATKFET-------------------EIIFDH-INKV   87 (320)
T ss_dssp             ---------CCS-------------TTCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEE
T ss_pred             ---------hhC-------------CCCCCCCCHHHHHHHHHHHHHHCCC-------------------EEEEee-eeEE
Confidence                     000             0000123445666777777777776                   888886 8888


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +.+++.+++ +.   ++.    ++.+|+||.|+|.++.
T Consensus        88 ~~~~~~~~v-~~---~~~----~~~~~~lv~AtG~~~~  117 (320)
T 1trb_A           88 DLQNRPFRL-NG---DNG----EYTCDALIIATGASAR  117 (320)
T ss_dssp             ECSSSSEEE-EE---SSC----EEEEEEEEECCCEEEC
T ss_pred             EecCCEEEE-Ee---CCC----EEEcCEEEECCCCCcC
Confidence            887777766 32   342    6899999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.72  E-value=5.6e-08  Score=104.19  Aligned_cols=141  Identities=18%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      .++||+||||||+|+++|..|+++|+ +|+|||+.+ +.    +         .+...+..    ...-.+.       +
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~G----g---------~~~~~~~~----~~~~~~~-------~   57 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VG----H---------SFKHWPKS----TRTITPS-------F   57 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TT----H---------HHHTSCTT----CBCSSCC-------C
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CC----C---------ccccCccc----ccccCcc-------h
Confidence            35899999999999999999999999 999999986 21    1         00000000    0000000       0


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                      .....|-.  .+.......... . ......+.+..+...|.+.+++.|+                   +++++++|+++
T Consensus        58 ~~~~~g~~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~i~~~~~v~~i  114 (369)
T 3d1c_A           58 TSNGFGMP--DMNAISMDTSPA-F-TFNEEHISGETYAEYLQVVANHYEL-------------------NIFENTVVTNI  114 (369)
T ss_dssp             CCGGGTCC--CTTCSSTTCCHH-H-HHCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEE
T ss_pred             hcccCCch--hhhhcccccccc-c-cccccCCCHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEE
Confidence            00000000  000000000000 0 0001134556677778777777776                   89999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +.++++++++..   ++     ++.+|+||.|.|.++.
T Consensus       115 ~~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A          115 SADDAYYTIATT---TE-----TYHADYIFVATGDYNF  144 (369)
T ss_dssp             EECSSSEEEEES---SC-----CEEEEEEEECCCSTTS
T ss_pred             EECCCeEEEEeC---CC-----EEEeCEEEECCCCCCc
Confidence            988777666542   33     4789999999998863

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.72  E-value=6e-07  Score=100.26  Aligned_cols=38  Identities=34%  Similarity=0.541  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            45689999999999999999999999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.71  E-value=1.4e-08  Score=107.57  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=76.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +..+||+||||||+|+++|+.|+++|++|+|||+..     +.+.            +       . .....        
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-----~gg~------------~-------~-~~~~~--------   58 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-----FGGA------------L-------M-TTTDV--------   58 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-----CSCG------------G-------G-SCSCB--------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-----CCCc------------e-------e-ccchh--------
Confidence            345899999999999999999999999999999651     1110            0       0 00000        


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                               ...             |.....+....+...|.+.+.+.++                   ++++++ ++++
T Consensus        59 ---------~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~~~-v~~i   96 (335)
T 2a87_A           59 ---------ENY-------------PGFRNGITGPELMDEMREQALRFGA-------------------DLRMED-VESV   96 (335)
T ss_dssp             ---------CCS-------------TTCTTCBCHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEE
T ss_pred             ---------hhc-------------CCCCCCCCHHHHHHHHHHHHHHcCC-------------------EEEEee-EEEE
Confidence                     000             0000123456677777777777776                   888887 8888


Q ss_pred             EEcCCeEEE-EEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATDQCINV-IASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~~~v~v-~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +. ++.+++ .+   .+|.    ++.+|+||.|+|.++.
T Consensus        97 ~~-~~~~~v~~~---~~g~----~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           97 SL-HGPLKSVVT---ADGQ----THRARAVILAMGAAAR  127 (335)
T ss_dssp             EC-SSSSEEEEE---TTSC----EEEEEEEEECCCEEEC
T ss_pred             Ee-CCcEEEEEe---CCCC----EEEeCEEEECCCCCcc
Confidence            77 455555 33   2342    6899999999998764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.68  E-value=7.6e-08  Score=106.98  Aligned_cols=144  Identities=16%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCH---hHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINN---RYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~---rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ++||+||||||+|+++|+.|+++|++|+||||.. .    .+..++.   .+..++... ++.+.+........    +.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~----gG~~~~~g~~psk~ll~~~-~~~~~~~~~~~~~g----~~   72 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-W----GGVCLNVGCIPSKALLRNA-ELVHIFTKDAKAFG----IS   72 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-T----THHHHHHSHHHHHHHHHHH-HHHHHHHHHTTTTT----EE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-C----CCcccccCchhhHHHHHHH-HHHHHHHHHHHhcC----CC
Confidence            5899999999999999999999999999999972 1    1221211   234445544 55555541111110    00


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                           .+..   .      ++.... .... . -...+...|.+.+.+.++                   ++++++.+. 
T Consensus        73 -----~~~~---~------~~~~~~-~~~~-~-~~~~l~~~l~~~~~~~gv-------------------~~~~g~~~~-  115 (464)
T 2a8x_A           73 -----GEVT---F------DYGIAY-DRSR-K-VAEGRVAGVHFLMKKNKI-------------------TEIHGYGTF-  115 (464)
T ss_dssp             -----ECCE---E------CHHHHH-HHHH-H-HHHHHHHHHHHHHHHTTC-------------------EEECEEEEE-
T ss_pred             -----CCCc---c------CHHHHH-HHHH-H-HHHHHHHHHHHHHHhCCC-------------------EEEEeEEEE-
Confidence                 0000   0      000000 0000 0 013345556666666665                   888887654 


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                        .+.+.+++...   +|+  ..++++|+||.|+|.++.+.
T Consensus       116 --id~~~v~V~~~---~G~--~~~~~~d~lViAtG~~~~~~  149 (464)
T 2a8x_A          116 --ADANTLLVDLN---DGG--TESVTFDNAIIATGSSTRLV  149 (464)
T ss_dssp             --SSSSEEEEEET---TSC--CEEEEEEEEEECCCEEECCC
T ss_pred             --ecCCeEEEEeC---CCc--eEEEEcCEEEECCCCCCCCC
Confidence              35556555432   342  24789999999999988544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.68  E-value=5.1e-08  Score=114.44  Aligned_cols=37  Identities=41%  Similarity=0.658  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+||+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            4589999999999999999999999999999997654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.68  E-value=4e-08  Score=105.40  Aligned_cols=37  Identities=22%  Similarity=0.528  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++||+|||||++|+++|+.|+++|++|+||||...
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            3468999999999999999999999999999999753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.67  E-value=6.1e-08  Score=101.29  Aligned_cols=113  Identities=17%  Similarity=0.310  Sum_probs=76.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ++||+||||||+||++|+.|+++|++|+|||+...      +...        ... ++                     
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~g------G~~~--------~~~-~~---------------------   44 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG------GQIL--------DTV-DI---------------------   44 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT------GGGG--------GCC-EE---------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC------ceec--------ccc-cc---------------------
Confidence            37999999999999999999999999999986421      1000        000 00                     


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                             ..+  .        .    .....+..+...|.+.+.+.++                   +++++++++.++.
T Consensus        45 -------~~~--~--------~----~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~~~v~~i~~   84 (310)
T 1fl2_A           45 -------ENY--I--------S----VPKTEGQKLAGALKVHVDEYDV-------------------DVIDSQSASKLIP   84 (310)
T ss_dssp             -------CCB--T--------T----BSSEEHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEEEC
T ss_pred             -------ccc--c--------C----cCCCCHHHHHHHHHHHHHHcCC-------------------eEEccCEEEEEEe
Confidence                   000  0        0    0012345666777777777776                   8999999999976


Q ss_pred             cCC---eEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQ---CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~---~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +.+   .+++++.   +|+    ++++|+||.|+|.++.
T Consensus        85 ~~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           85 AAVEGGLHQIETA---SGA----VLKARSIIVATGAKWR  116 (310)
T ss_dssp             CSSTTCCEEEEET---TSC----EEEEEEEEECCCEEEC
T ss_pred             cccCCceEEEEEC---CCC----EEEeCEEEECcCCCcC
Confidence            532   4555442   442    6899999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.65  E-value=9.3e-08  Score=99.88  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .|+++||+||||||+||++|+.|+|+|.+|+|||+..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3678999999999999999999999999999999863

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.62  E-value=1.2e-07  Score=105.84  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+||||||+|+++|+.|++.|++|+||||.+..
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4689999999999999999999999999999997643

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.61  E-value=4.3e-07  Score=105.00  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH---h-CCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLT---K-LGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~La---r-~Gi~v~lvEr~~~~   78 (712)
                      ..++||||||||++||++|+.|+   + +|.+|+||||....
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            45689999999999999999999   6 89999999998743

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.56  E-value=6.5e-07  Score=100.39  Aligned_cols=65  Identities=11%  Similarity=0.094  Sum_probs=51.2

Q ss_pred             cccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCC--------eEEEEEEeccCCceee
Q 005134          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ--------CINVIASFLKEGKCTE  221 (712)
Q Consensus       150 ~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~--------~v~v~v~~~~~g~~~~  221 (712)
                      ...+|.++...|...+++++.                   .|+|+++|++++..++        ..+|++.+..+|+  .
T Consensus       140 ~~p~r~E~~~Yl~~~A~~~~~-------------------~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~--~  198 (501)
T 4b63_A          140 FLPARLEFEDYMRWCAQQFSD-------------------VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE--I  198 (501)
T ss_dssp             SCCBHHHHHHHHHHHHHTTGG-------------------GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC--E
T ss_pred             CCCCHHHHHHHHHHHHHHcCC-------------------ceEcceEEEeeccccccccccccceEEEEEecCCCce--E
Confidence            346788999999999887654                   7999999999987542        4677777554453  5


Q ss_pred             EEEEecEEEeccCC
Q 005134          222 RNIQCNILIGTDGA  235 (712)
Q Consensus       222 ~~i~ad~VVgADG~  235 (712)
                      .+++|+.||.|-|.
T Consensus       199 ~~~~ar~vVlatG~  212 (501)
T 4b63_A          199 SARRTRKVVIAIGG  212 (501)
T ss_dssp             EEEEEEEEEECCCC
T ss_pred             EEEEeCEEEECcCC
Confidence            68999999999994

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.56  E-value=5.1e-07  Score=100.86  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      +.++||+||||||+||++|+.|+++|++|+||||.
T Consensus        24 ~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           24 SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            34689999999999999999999999999999994

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.55  E-value=2.1e-07  Score=103.83  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            4589999999999999999999999999999997543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.52  E-value=2.7e-07  Score=104.00  Aligned_cols=115  Identities=16%  Similarity=0.302  Sum_probs=78.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      +..+||+||||||+|+++|+.|+++|++|+|||++..      +...        ... ++         +         
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~G------G~~~--------~~~-~~---------~---------  256 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFG------GQVL--------DTV-DI---------E---------  256 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTT------GGGT--------TCS-CB---------C---------
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC------Cccc--------ccc-cc---------c---------
Confidence            3468999999999999999999999999999986421      1000        000 00         0         


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                                        .+.  .    ........+...|.+.+.+.|+                   +++++++++++
T Consensus       257 ------------------~~~--~----~~~~~~~~l~~~l~~~~~~~gv-------------------~v~~~~~v~~i  293 (521)
T 1hyu_A          257 ------------------NYI--S----VPKTEGQKLAGALKAHVSDYDV-------------------DVIDSQSASKL  293 (521)
T ss_dssp             ------------------CBT--T----BSSBCHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEE
T ss_pred             ------------------ccC--C----CCCCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEE
Confidence                              000  0    0012455677778888888776                   89999999999


Q ss_pred             EEcC---CeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          201 SATD---QCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       201 ~~~~---~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ..+.   +.+++++.   +|.    ++++|+||.|+|+++.
T Consensus       294 ~~~~~~~~~~~V~~~---~g~----~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          294 VPAATEGGLHQIETA---SGA----VLKARSIIIATGAKWR  327 (521)
T ss_dssp             ECCSSTTSCEEEEET---TSC----EEEEEEEEECCCEEEC
T ss_pred             EeccCCCceEEEEEC---CCC----EEEcCEEEECCCCCcC
Confidence            7542   25555542   453    6899999999998753

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.51  E-value=1.6e-06  Score=97.06  Aligned_cols=37  Identities=32%  Similarity=0.611  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      |+++||+||||||+|+++|+.|+++|.+|+||||.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4569999999999999999999999999999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.50  E-value=2.6e-07  Score=102.83  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCce------------ee---cCHhHHHHHHhhhcHHHHH
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA------------HF---INNRYALVFRKLDGLAEEI  105 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra------------~~---i~~rtmeilr~l~Gl~d~l  105 (712)
                      ..+||+|||||++||++|..|+++|++|+|+|+++.+.-+.+.            ..   -.+..+++++++ |+.+.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~-gl~~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAAL-NLEGRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHT-TCGGGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHc-CCccee
Confidence            3579999999999999999999999999999999865221111            11   146788999998 876544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.47  E-value=2.3e-07  Score=103.17  Aligned_cols=37  Identities=38%  Similarity=0.603  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4589999999999999999999999999999998654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.43  E-value=3.3e-07  Score=101.92  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~   78 (712)
                      .||+|||||++||++|+.|+++|.  +|+|+|+++.+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            689999999999999999999999  99999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.37  E-value=1.4e-06  Score=90.67  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=75.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~l-vEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ..+||+||||||+||++|+.|+++|++|+| +||. .+    .                |..   .... ..        
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~----g----------------G~~---~~~~-~~--------   49 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MP----G----------------GQI---TSSS-EI--------   49 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-ST----T----------------GGG---GGCS-CB--------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CC----C----------------cee---eeec-ee--------
Confidence            348999999999999999999999999999 9993 22    1                110   0000 00        


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                               .             ..|.....++...+...|.+.+.+.++                   +++++ +++++
T Consensus        50 ---------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~-~v~~i   87 (315)
T 3r9u_A           50 ---------E-------------NYPGVAQVMDGISFMAPWSEQCMRFGL-------------------KHEMV-GVEQI   87 (315)
T ss_dssp             ---------C-------------CSTTCCSCBCHHHHHHHHHHHHTTTCC-------------------EEECC-CEEEE
T ss_pred             ---------c-------------cCCCCCCCCCHHHHHHHHHHHHHHcCc-------------------EEEEE-EEEEE
Confidence                     0             000001134456777778888887776                   78888 88888


Q ss_pred             EEcC--CeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          201 SATD--QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       201 ~~~~--~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                       .++  +.+++.+.   ++   . ++.+|+||.|.|...
T Consensus        88 -~~~~~~~~~v~~~---~~---~-~~~~d~lvlAtG~~~  118 (315)
T 3r9u_A           88 -LKNSDGSFTIKLE---GG---K-TELAKAVIVCTGSAP  118 (315)
T ss_dssp             -EECTTSCEEEEET---TS---C-EEEEEEEEECCCEEE
T ss_pred             -ecCCCCcEEEEEe---cC---C-EEEeCEEEEeeCCCC
Confidence             666  66654343   22   1 689999999999743

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.35  E-value=4.5e-08  Score=104.43  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G------i~v~lvEr~~   76 (712)
                      +||+|||||++||++|+.|+++|      .+|+||||..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            48999999999999999999998      9999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.35  E-value=4.7e-07  Score=94.59  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+||+||||||+||++|+.|+++|++|+|||+..
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            3899999999999999999999999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.32  E-value=1.1e-05  Score=89.63  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=33.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.++||+||||||+|+++|+.|+++|.+|+||||..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            456999999999999999999999999999999764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.28  E-value=2.3e-06  Score=98.00  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +...+|+||||||+||++|..|+++  |.+|+||||.+..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3457999999999999999999999  8999999999865

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.28  E-value=1e-05  Score=89.97  Aligned_cols=36  Identities=39%  Similarity=0.672  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .++||+||||||+|+++|+.|+++|.+|+||||.+.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            359999999999999999999999999999999863

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.22  E-value=2.8e-06  Score=94.93  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~~   78 (712)
                      +++||+||||||+|+++|..|+++|   .+|+|||+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            3589999999999999999999998   999999998754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.22  E-value=2.7e-06  Score=94.69  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            34689999999999999999999999999999998643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.21  E-value=6.3e-06  Score=91.16  Aligned_cols=34  Identities=41%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      .++||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3589999999999999999999999999999997

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.21  E-value=3e-06  Score=94.20  Aligned_cols=36  Identities=14%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +.+|+||||||+||++|..|+++  |.+|+||||.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999999  9999999999765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.20  E-value=1.9e-06  Score=93.86  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~   76 (712)
                      .+|+|||||++||++|..|++   .|++|+|||+++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            479999999999999999999   899999999987

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.19  E-value=6e-06  Score=91.28  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~   79 (712)
                      +||+||||||+||++|..|+++  |.+|+|||+.+...
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            6999999999999999999999  99999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.19  E-value=3.3e-06  Score=92.73  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      ++||+||||||+|+++|..|+++|.  +|+|||+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            4899999999999999999999998  7999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.17  E-value=1e-06  Score=92.20  Aligned_cols=37  Identities=24%  Similarity=0.549  Sum_probs=33.2

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      |+..+|||+||||||+||++|+.|+++|++|+||||.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~   38 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG   38 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4456799999999999999999999999999999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.16  E-value=5.9e-06  Score=91.28  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=32.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +||+||||||+|+++|..|+++  |.+|+|||+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4899999999999999999999  9999999998754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.14  E-value=1.3e-05  Score=90.31  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            356999999999999999999999999999999975

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.14  E-value=7e-06  Score=91.46  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6999999999999999999997  9999999998754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1.8e-06  Score=91.08  Aligned_cols=37  Identities=38%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar--~Gi~v~lvEr~~~~   78 (712)
                      .++||+||||||+||++|+.|++  .|++|+||||.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            35799999999999999999975  59999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.13  E-value=6.8e-06  Score=89.40  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~   78 (712)
                      .+|+|||||++||++|..|+++|.  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            589999999999999999999999  89999998743

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.12  E-value=3.6e-06  Score=93.46  Aligned_cols=36  Identities=39%  Similarity=0.636  Sum_probs=33.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            489999999999999999999999999999998643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.12  E-value=3.4e-05  Score=85.96  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      +.++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            34699999999999999999999999999999963

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.11  E-value=1.5e-05  Score=87.95  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      +||+||||||+|+++|..|+++  |.+|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            4799999999999999999998  9999999998754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.11  E-value=2.1e-05  Score=87.25  Aligned_cols=104  Identities=18%  Similarity=0.274  Sum_probs=77.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                +                         
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-------------------------  208 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ----------------G-------------------------  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------S-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc----------------c-------------------------
Confidence            58999999999999999999999999999997653210                0                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                    ...+...|.+.+++.|+                   ++++++++++++.+
T Consensus       209 ------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          209 ------------------------------DPETAALLRRALEKEGI-------------------RVRTKTKAVGYEKK  239 (464)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEEE
T ss_pred             ------------------------------CHHHHHHHHHHHHhcCC-------------------EEEcCCEEEEEEEe
Confidence                                          01223445566667776                   99999999999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++.+++....+|+  +.++.+|+||.|.|.++..
T Consensus       240 ~~~~~v~~~~~~~g~--~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          240 KDGLHVRLEPAEGGE--GEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             TTEEEEEEEETTCCS--CEEEEESEEEECSCEEESC
T ss_pred             CCEEEEEEeecCCCc--eeEEEcCEEEECCCcccCC
Confidence            877766664211142  3478999999999977643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.10  E-value=8.2e-06  Score=88.21  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+++|+|||||++|+++|..|.+.+.+++|||+.+..
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            45689999999999999999998889999999998864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.10  E-value=3.5e-05  Score=88.46  Aligned_cols=38  Identities=29%  Similarity=0.430  Sum_probs=34.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      .++||+|||||++|+++|+.|+++|++|+||||.+...
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            46899999999999999999999999999999987654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.09  E-value=6.4e-06  Score=90.95  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .++|+||||||+||++|..|+++  |.+|+|||+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999998  8899999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.09  E-value=3.3e-05  Score=86.96  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=34.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +.++||+|||||++|+++|+.|++.|.+|+|||+.+.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3458999999999999999999999999999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.08  E-value=8.5e-06  Score=92.65  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .+|+||||||+||++|..|+++  |.+|+|||+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4799999999999999999998  8999999999765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.08  E-value=8.1e-06  Score=90.57  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .++||+||||||+|+++|+.|+++|++|+||||++.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~   38 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE   38 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            368999999999999999999999999999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.07  E-value=2.1e-05  Score=86.84  Aligned_cols=100  Identities=18%  Similarity=0.301  Sum_probs=75.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.                +                        
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------~------------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT----------------M------------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT----------------S------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc----------------c------------------------
Confidence            357999999999999999999999999999998653110                0                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       207 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~~  236 (455)
T 2yqu_A          207 -------------------------------DLEVSRAAERVFKKQGL-------------------TIRTGVRVTAVVP  236 (455)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                           01122334555566676                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +++++.+++.   +|+    ++.+|+||.|.|.++..
T Consensus       237 ~~~~v~v~~~---~g~----~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          237 EAKGARVELE---GGE----VLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             eCCEEEEEEC---CCe----EEEcCEEEECcCCCcCC
Confidence            8877665542   342    68999999999988754

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.07  E-value=1.9e-06  Score=96.60  Aligned_cols=38  Identities=32%  Similarity=0.556  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      .+++||+|||||++||++|..|+++ |++|+|+|+++.+
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            4569999999999999999999985 9999999999764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.06  E-value=1.7e-05  Score=85.50  Aligned_cols=101  Identities=21%  Similarity=0.297  Sum_probs=76.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                .                        
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~------------------------  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------------L------------------------  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------T------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc----------------c------------------------
Confidence            367999999999999999999999999999987643210                0                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                    ....+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       185 ------------------------------~~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  215 (384)
T 2v3a_A          185 ------------------------------LHPAAAKAVQAGLEGLGV-------------------RFHLGPVLASLKK  215 (384)
T ss_dssp             ------------------------------SCHHHHHHHHHHHHTTTC-------------------EEEESCCEEEEEE
T ss_pred             ------------------------------cCHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEe
Confidence                                          001233455666667776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +++++.+++.   +|+    ++.+|+||.|.|.++..
T Consensus       216 ~~~~~~v~~~---~g~----~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          216 AGEGLEAHLS---DGE----VIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             cCCEEEEEEC---CCC----EEECCEEEECcCCCcCH
Confidence            8777666543   453    68999999999987743

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.04  E-value=1.1e-05  Score=88.12  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~--v~lvEr~~~~   78 (712)
                      .+++|+|||||++|+++|..|+++|.+  |+|||+.+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            458999999999999999999999987  9999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.04  E-value=4.4e-05  Score=84.64  Aligned_cols=35  Identities=17%  Similarity=0.434  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|+.|+++|.+|+|||+..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45899999999999999999999999999999983

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.03  E-value=9.3e-06  Score=89.79  Aligned_cols=34  Identities=47%  Similarity=0.764  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +||+||||||+|+++|+.|+++|++|+|||+.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            7999999999999999999999999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.00  E-value=6.8e-06  Score=90.64  Aligned_cols=39  Identities=36%  Similarity=0.516  Sum_probs=35.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++.++||+|||||++||++|+.|+++|++|+|+|++..+
T Consensus         2 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            355789999999999999999999999999999998755

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.97  E-value=2.6e-05  Score=86.44  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus         5 ~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            5 KTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36899999999999999999999999999999976

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.96  E-value=8.7e-05  Score=82.44  Aligned_cols=105  Identities=19%  Similarity=0.358  Sum_probs=77.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.     +.                                  
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~----------------------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----MD----------------------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----SC----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-----cC----------------------------------
Confidence            358999999999999999999999999999998743210     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       224 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  252 (478)
T 1v59_A          224 --------------------------------GEVAKATQKFLKKQGL-------------------DFKLSTKVISAKR  252 (478)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            1223345555666776                   9999999999987


Q ss_pred             --cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 --TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 --~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                        +++.+.+++....+|+  ..++.+|.||.|.|.....
T Consensus       253 ~~~~~~~~v~~~~~~~g~--~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          253 NDDKNVVEIVVEDTKTNK--QENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             ETTTTEEEEEEEETTTTE--EEEEEESEEEECSCEEECC
T ss_pred             ecCCCeEEEEEEEcCCCC--ceEEECCEEEECCCCCcCC
Confidence              5666666665322332  2478999999999987654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.96  E-value=3.2e-05  Score=86.03  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|+.|++.|.+|+||||..
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999974

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.95  E-value=1.1e-05  Score=87.98  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~   78 (712)
                      .++||+||||||+|+++|..|+++|.  +|+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            45899999999999999999999998  49999998643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.95  E-value=4.7e-05  Score=84.91  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            356999999999999999999999999999999854

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.90  E-value=2.9e-05  Score=86.94  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~   76 (712)
                      ++||+||||||+|+++|..|+++   |++|+||||.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            47999999999999999999999   99999999986

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.89  E-value=9.3e-06  Score=89.30  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar---~Gi~v~lvEr~~~   77 (712)
                      .+|+|||||++|+++|..|++   .|++|+|||+.+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            589999999999999999999   8999999999874

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.89  E-value=1.1e-05  Score=86.40  Aligned_cols=37  Identities=43%  Similarity=0.584  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~-~~   77 (712)
                      ...++|+|||||++||++|+.|+++|++|+|+|++ ..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            34689999999999999999999999999999998 53

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.89  E-value=1.2e-05  Score=89.86  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=48.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------ceeec---CHhHHHHHHhhhcHHHH
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHFI---NNRYALVFRKLDGLAEE  104 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~------------ra~~i---~~rtmeilr~l~Gl~d~  104 (712)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.+.-.-            .++.+   .+..+++++++ |+.+.
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l-gl~~~   88 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSL-GLREK   88 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHT-TCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHc-CCccc
Confidence            35899999999999999999999999999999998652211            11222   46788999998 88654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.87  E-value=0.0001  Score=81.32  Aligned_cols=103  Identities=17%  Similarity=0.342  Sum_probs=77.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                +                        
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------~------------------------  209 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG----------------F------------------------  209 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------S------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc----------------c------------------------
Confidence            368999999999999999999999999999988653100                0                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       210 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  239 (455)
T 1ebd_A          210 -------------------------------EKQMAAIIKKRLKKKGV-------------------EVVTNALAKGAEE  239 (455)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                           01123345555666776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +++++.+++..  +|+  ..++.+|.||.|.|.+...
T Consensus       240 ~~~~~~v~~~~--~g~--~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          240 REDGVTVTYEA--NGE--TKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ETTEEEEEEEE--TTE--EEEEEESEEEECSCEEESC
T ss_pred             eCCeEEEEEEe--CCc--eeEEEcCEEEECcCCCccc
Confidence            87777666642  332  2478999999999987643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=2.9e-05  Score=83.28  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -.||+||||||+|+++|..|+++| +|+|||+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            469999999999999999999999 99999998754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.85  E-value=1.2e-05  Score=88.92  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+|||||++||++|..|+++|.+|+|+||++.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~   46 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   46 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            4589999999999999999999999999999999865

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.84  E-value=1.4e-05  Score=87.04  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~--v~lvEr~~~~   78 (712)
                      .+|+|||||++|+++|..|+++|.+  |+|||+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            4899999999999999999999988  9999998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.84  E-value=4.5e-05  Score=83.81  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~   78 (712)
                      +|+||||||+|+++|..|+++|  .+|+|||+.+..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            6999999999999999999998  579999998653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.80  E-value=6.9e-05  Score=82.62  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=73.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                .+ .                      
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------~~-~----------------------  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP----------------SF-D----------------------  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS-C----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh----------------hh-h----------------------
Confidence            35799999999999999999999999999998764210                00 0                      


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       208 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  236 (450)
T 1ges_A          208 --------------------------------PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVK  236 (450)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            0122344555666676                   9999999999988


Q ss_pred             cCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++ +.+++.   +|+    ++.+|.||.|.|.++.+
T Consensus       237 ~~~~~~~v~~~---~g~----~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          237 NTDGSLTLELE---DGR----SETVDCLIWAIGREPAN  267 (450)
T ss_dssp             CTTSCEEEEET---TSC----EEEESEEEECSCEEESC
T ss_pred             eCCcEEEEEEC---CCc----EEEcCEEEECCCCCcCC
Confidence            7654 555442   453    68999999999977643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.80  E-value=0.00021  Score=78.85  Aligned_cols=142  Identities=13%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCc----eeecCHhHHHHHHhhhcHH--HHHHhcCCCccc
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGLA--EEIERSQPPVDL  114 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~~~~r----a~~i~~rtmeilr~l~Gl~--d~l~~~~~~~~~  114 (712)
                      ..+|+|||||.+|+-+|..|++.  |.+|++++|.+...+...    ....++...+.|..+ .-.  ..+.+.....  
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l-~~~~~~~~~~~~~~~--  303 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSR-EHAERERLLREYHNT--  303 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHS-CHHHHHHHHHHTGGG--
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcC-CHHHHHHHHHHhhcc--
Confidence            45899999999999999999999  999999999986533211    123345555555544 111  1111110000  


Q ss_pred             cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHh-cCceeeccCccccccccccccceEEe
Q 005134          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILM  193 (712)
Q Consensus       115 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~  193 (712)
                                              .    .... ...+.....+.+..+.+.. .+                   +++++
T Consensus       304 ------------------------~----~~~~-~~~~~~~~~~~l~~~~~~~~~~-------------------v~i~~  335 (463)
T 3s5w_A          304 ------------------------N----YSVV-DTDLIERIYGVFYRQKVSGIPR-------------------HAFRC  335 (463)
T ss_dssp             ------------------------T----SSCB-CHHHHHHHHHHHHHHHHHCCCC-------------------SEEET
T ss_pred             ------------------------C----CCcC-CHHHHHHHHHHHHHHHhcCCCC-------------------eEEEe
Confidence                                    0    0000 0000111122222233322 23                   49999


Q ss_pred             CcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       194 g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++|++++.+++++.+++....+|+  +.++.+|+||-|-|...
T Consensus       336 ~~~v~~v~~~~~~~~v~~~~~~~g~--~~~~~~D~Vv~AtG~~p  377 (463)
T 3s5w_A          336 MTTVERATATAQGIELALRDAGSGE--LSVETYDAVILATGYER  377 (463)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTCC--EEEEEESEEEECCCEEC
T ss_pred             CCEEEEEEecCCEEEEEEEEcCCCC--eEEEECCEEEEeeCCCC
Confidence            9999999999899888887654554  45799999999999664

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.78  E-value=3.6e-05  Score=82.98  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~   76 (712)
                      ++||+||||||+|+++|..|+++|  ++|+|+|++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            489999999999999999999999  6799999875

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.77  E-value=1.4e-05  Score=89.84  Aligned_cols=38  Identities=37%  Similarity=0.507  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~   78 (712)
                      +.++||+|||||++||++|..|+++| ++|+|+|++..+
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            55689999999999999999999999 999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.75  E-value=0.00015  Score=80.38  Aligned_cols=104  Identities=16%  Similarity=0.335  Sum_probs=77.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                + .                      
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------~-~----------------------  217 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT----------------M-D----------------------  217 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------S-C----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc----------------c-c----------------------
Confidence            357999999999999999999999999999998643110                0 0                      


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       218 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  246 (470)
T 1dxl_A          218 --------------------------------AEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVDT  246 (470)
T ss_dssp             --------------------------------HHHHHHHHHHHHHSSC-------------------CEECSEEEEEEEC
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                            0122345555666776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++++.+++....+|+  ..++.+|.||.|.|....
T Consensus       247 ~~~~~~v~~~~~~~g~--~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          247 SGDGVKLTVEPSAGGE--QTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             SSSSEEEEEEESSSCC--CEEEEESEEECCCCEEEC
T ss_pred             cCCeEEEEEEecCCCc--ceEEECCEEEECCCCCcC
Confidence            7777777665322332  247899999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.75  E-value=3.8e-05  Score=85.76  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||+||||||+||++|+.|+++ .+|+|||+.+.+
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~  142 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWL  142 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSS
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCC
Confidence            3457999999999999999999999 999999998754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.73  E-value=2.4e-05  Score=85.42  Aligned_cols=37  Identities=30%  Similarity=0.571  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~   78 (712)
                      .++||+|||||++||++|+.|+++| ++|+|+|+++.+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4589999999999999999999999 999999998754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.71  E-value=0.00024  Score=78.79  Aligned_cols=105  Identities=19%  Similarity=0.333  Sum_probs=76.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.               .+                        
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~------------------------  218 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV---------------GI------------------------  218 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS---------------SC------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc---------------cc------------------------
Confidence            357999999999999999999999999999998653210               00                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+...|.+.+++.|+                   ++++++++++++.
T Consensus       219 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  248 (474)
T 1zmd_A          219 -------------------------------DMEISKNFQRILQKQGF-------------------KFKLNTKVTGATK  248 (474)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCceEEEEEE
Confidence                                           01122345556667776                   9999999999998


Q ss_pred             cCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++ +.+++....+++  ..++.+|.||.|.|....
T Consensus       249 ~~~~~~~v~~~~~~~~~--~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          249 KSDGKIDVSIEAASGGK--AEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             CTTSCEEEEEEETTSCC--CEEEEESEEEECSCEEEC
T ss_pred             cCCceEEEEEEecCCCC--ceEEEcCEEEECcCCCcC
Confidence            7766 766654321222  247899999999997653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.68  E-value=2.9e-05  Score=83.85  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            45689999999999999999999999999999998653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.67  E-value=3.1e-05  Score=84.88  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~   77 (712)
                      +|+|||||++|+++|..|++.+  ++|+|||+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            6999999999999999999876  89999998864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.66  E-value=3.1e-05  Score=84.05  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      .++||+|||||++||++|..|+++ |++|+|+|+++.+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            358999999999999999999999 9999999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.65  E-value=2.4e-05  Score=86.67  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      .++||+||||||+||++|+.|+++|++|+||||
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            468999999999999999999999999999999

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.64  E-value=0.00018  Score=79.14  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc
Confidence            346899999999999999999999999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.62  E-value=0.00038  Score=77.05  Aligned_cols=103  Identities=17%  Similarity=0.360  Sum_probs=75.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.     +.                                  
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d----------------------------------  214 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-----LD----------------------------------  214 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SC----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----CC----------------------------------
Confidence            358999999999999999999999999999988653110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHH-HhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL-EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                                                      ..+...|.+.+ ++.|+                   ++++++++++++
T Consensus       215 --------------------------------~~~~~~l~~~l~~~~gv-------------------~i~~~~~v~~i~  243 (468)
T 2qae_A          215 --------------------------------EDVTNALVGALAKNEKM-------------------KFMTSTKVVGGT  243 (468)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTCC-------------------EEECSCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHhhcCCc-------------------EEEeCCEEEEEE
Confidence                                            11223455556 66676                   999999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      .+++++.+++.. .+|+  ..++.+|.||.|-|.++.
T Consensus       244 ~~~~~~~v~~~~-~~g~--~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          244 NNGDSVSLEVEG-KNGK--RETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             ECSSSEEEEEEC-C-----EEEEEESEEEECSCEEEC
T ss_pred             EcCCeEEEEEEc-CCCc--eEEEECCEEEECCCcccC
Confidence            877777666642 1332  347899999999997764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.60  E-value=0.00045  Score=71.83  Aligned_cols=100  Identities=14%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+....       .                                   
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-----------------------------------  183 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------E-----------------------------------  183 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC-------C-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc-------C-----------------------------------
Confidence            5799999999999999999999999999998764310       0                                   


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       184 -------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~~  213 (320)
T 1trb_A          184 -------------------------------KILIKRLMDKVENGNI-------------------ILHTNRTLEEVTGD  213 (320)
T ss_dssp             -------------------------------HHHHHHHHHHHHTSSE-------------------EEECSCEEEEEEEC
T ss_pred             -------------------------------HHHHHHHHHhcccCCe-------------------EEEcCceeEEEEcC
Confidence                                           0112234445556665                   99999999999887


Q ss_pred             CCeEE-EEEEeccC-CceeeEEEEecEEEeccCCCc
Q 005134          204 DQCIN-VIASFLKE-GKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~-v~v~~~~~-g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++.++ +++.+..+ |+  ..++.+|.||.|-|...
T Consensus       214 ~~~v~~v~~~~~~~~g~--~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          214 QMGVTGVRLRDTQNSDN--IESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             SSSEEEEEEECCTTCCC--CEEEECSEEEECSCEEE
T ss_pred             CCceEEEEEEeccCCCc--eEEEEcCEEEEEeCCCC
Confidence            75543 55542212 32  35789999999999664

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.60  E-value=2.8e-05  Score=86.82  Aligned_cols=36  Identities=25%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..++||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus         6 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            6 VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            346999999999999999999999999999999964

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.60  E-value=0.00026  Score=78.35  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-.                .+ +                       
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~----------------~~-~-----------------------  206 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF----------------QF-D-----------------------  206 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS-C-----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc----------------cc-C-----------------------
Confidence            5799999999999999999999999999998764310                00 0                       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...|.+.+++.|+                   ++++++++++++.+
T Consensus       207 -------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          207 -------------------------------PLLSATLAENMHAQGI-------------------ETHLEFAVAALERD  236 (463)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEEE
T ss_pred             -------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEe
Confidence                                           0111234455566676                   99999999999987


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++.+++.   +|+  + ++.+|.||.|.|.++.
T Consensus       237 ~~~~~v~~~---~G~--~-~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          237 AQGTTLVAQ---DGT--R-LEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             TTEEEEEET---TCC--E-EEEESEEEECSCEEES
T ss_pred             CCeEEEEEe---CCc--E-EEEcCEEEECCCCCcC
Confidence            777655542   453  2 6899999999997653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.59  E-value=7.2e-05  Score=83.48  Aligned_cols=37  Identities=35%  Similarity=0.448  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            4579999999999999999999999999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.56  E-value=0.00047  Score=76.59  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=75.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                +   .                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------~---~--------------------  225 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG----------------A---D--------------------  225 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------S---C--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc----------------c---C--------------------
Confidence            458999999999999999999999999999987643110                0   0                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       226 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  254 (482)
T 1ojt_A          226 --------------------------------RDLVKVWQKQNEYRFD-------------------NIMVNTKTVAVEP  254 (482)
T ss_dssp             --------------------------------HHHHHHHHHHHGGGEE-------------------EEECSCEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECCEEEEEEE
Confidence                                            0122344555666666                   9999999999998


Q ss_pred             cCCeEEEEEEeccC-CceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~v~v~v~~~~~-g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      +++++.+++.+..+ |+    ++.+|.||.|-|.+...
T Consensus       255 ~~~~~~v~~~~~~~~g~----~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          255 KEDGVYVTFEGANAPKE----PQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ETTEEEEEEESSSCCSS----CEEESCEEECCCEEECG
T ss_pred             cCCeEEEEEeccCCCce----EEEcCEEEECcCCCcCC
Confidence            87777776652111 32    57899999999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.52  E-value=0.00063  Score=75.15  Aligned_cols=101  Identities=20%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.     +.                                  
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~----------------------------------  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-----ED----------------------------------  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SC----------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cC----------------------------------
Confidence            357999999999999999999999999999998643110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       212 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  240 (464)
T 2a8x_A          212 --------------------------------ADVSKEIEKQFKKLGV-------------------TILTATKVESIAD  240 (464)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCcEEEEEEE
Confidence                                            0122334555566676                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++++.+++.  ++|+  ..++.+|.||.|-|...
T Consensus       241 ~~~~~~v~~~--~~g~--~~~~~~D~vv~a~G~~p  271 (464)
T 2a8x_A          241 GGSQVTVTVT--KDGV--AQELKAEKVLQAIGFAP  271 (464)
T ss_dssp             CSSCEEEEEE--SSSC--EEEEEESEEEECSCEEE
T ss_pred             cCCeEEEEEE--cCCc--eEEEEcCEEEECCCCCc
Confidence            7777766654  2342  34789999999999764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.52  E-value=6.4e-05  Score=83.72  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~   78 (712)
                      +..+||+|||||++||++|+.|+++| .+|+|+|+++.+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            34689999999999999999999999 799999998754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.52  E-value=5.1e-05  Score=81.87  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +++|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            479999999999999999999999999999998654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.50  E-value=0.00053  Score=77.14  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|||+||||||+|+++|+.++++|.+|.|||+....
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~   77 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPS   77 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            589999999999999999999999999999987643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00064  Score=75.45  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...     +.                                  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d----------------------------------  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-----FD----------------------------------  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----SC----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-----cC----------------------------------
Confidence            357999999999999999999999999999988643110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       226 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  254 (479)
T 2hqm_A          226 --------------------------------ECIQNTITDHYVKEGI-------------------NVHKLSKIVKVEK  254 (479)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEE
Confidence                                            0122234455566676                   9999999999988


Q ss_pred             cCCe--EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQC--INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~--v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++  +.+++.   +|+   .++.+|.||.|-|.+...
T Consensus       255 ~~~~~~~~v~~~---~G~---~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          255 NVETDKLKIHMN---DSK---SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             CC-CCCEEEEET---TSC---EEEEESEEEECSCEEECC
T ss_pred             cCCCcEEEEEEC---CCc---EEEEcCEEEECCCCCCcc
Confidence            6655  555442   452   368999999999987654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.48  E-value=0.0008  Score=74.97  Aligned_cols=101  Identities=18%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...     +.+                                 
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d~---------------------------------  215 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-----QDE---------------------------------  215 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----CCH---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----CCH---------------------------------
Confidence            467999999999999999999999999999998753210     000                                 


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                       .+.+.+.+.+++. +                   ++++++++++++.
T Consensus       216 ---------------------------------~~~~~l~~~l~~~-V-------------------~i~~~~~v~~i~~  242 (492)
T 3ic9_A          216 ---------------------------------EMKRYAEKTFNEE-F-------------------YFDAKARVISTIE  242 (492)
T ss_dssp             ---------------------------------HHHHHHHHHHHTT-S-------------------EEETTCEEEEEEE
T ss_pred             ---------------------------------HHHHHHHHHHhhC-c-------------------EEEECCEEEEEEE
Confidence                                             1122333444443 4                   8999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++++++++.. .+|+  +.++.+|.||.|-|...
T Consensus       243 ~~~~v~v~~~~-~~G~--~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          243 KEDAVEVIYFD-KSGQ--KTTESFQYVLAATGRKA  274 (492)
T ss_dssp             CSSSEEEEEEC-TTCC--EEEEEESEEEECSCCEE
T ss_pred             cCCEEEEEEEe-CCCc--eEEEECCEEEEeeCCcc
Confidence            88888776652 2342  35799999999999764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.47  E-value=6.4e-05  Score=80.58  Aligned_cols=35  Identities=37%  Similarity=0.450  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            68999999999999999999999999999998643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.46  E-value=8.5e-05  Score=86.54  Aligned_cols=37  Identities=35%  Similarity=0.479  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+.||+||||||+||++|..|+++|++|+||||.+.
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~  425 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD  425 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4568999999999999999999999999999999874

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.45  E-value=0.00019  Score=80.30  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+.+|||||||++|+++|..|++.+++|+|||+++.
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3456899999999999999999999999999999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.45  E-value=0.00086  Score=74.82  Aligned_cols=100  Identities=16%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.     +.                                  
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d----------------------------------  222 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----ED----------------------------------  222 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----SS----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cC----------------------------------
Confidence            368999999999999999999999999999988643110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       223 --------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~  251 (499)
T 1xdi_A          223 --------------------------------ADAALVLEESFAERGV-------------------RLFKNARAASVTR  251 (499)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEETTCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            0123345555667776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++++++.   .+|+    ++.+|.||.|-|.++..
T Consensus       252 ~~~~v~v~~---~~g~----~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          252 TGAGVLVTM---TDGR----TVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             CSSSEEEEE---TTSC----EEEESEEEECCCEEECC
T ss_pred             eCCEEEEEE---CCCc----EEEcCEEEECCCCCcCC
Confidence            777765543   2342    68999999999988654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.43  E-value=0.00046  Score=74.59  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~   77 (712)
                      +|+||||||+|+++|..|+++|  ++|+|||+++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            6999999999999999999876  68999998764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.41  E-value=0.00082  Score=73.06  Aligned_cols=100  Identities=18%  Similarity=0.279  Sum_probs=74.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...               .+                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~---------------~~------------------------  192 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR---------------VA------------------------  192 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------------TS------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh---------------hc------------------------
Confidence            457999999999999999999999999999988754110               00                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       193 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  222 (415)
T 3lxd_A          193 -------------------------------GEALSEFYQAEHRAHGV-------------------DLRTGAAMDCIEG  222 (415)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEETCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCEEEEEEe
Confidence                                           01233445566667776                   9999999999998


Q ss_pred             cCCeEE-EEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++.++ +++   .+|+    ++.||+||.|-|....
T Consensus       223 ~~~~v~~v~l---~dG~----~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          223 DGTKVTGVRM---QDGS----VIPADIVIVGIGIVPC  252 (415)
T ss_dssp             SSSBEEEEEE---SSSC----EEECSEEEECSCCEES
T ss_pred             cCCcEEEEEe---CCCC----EEEcCEEEECCCCccC
Confidence            776653 333   2453    6899999999997653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.39  E-value=0.00012  Score=80.85  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3579999999999999999999999999999998653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.38  E-value=0.00011  Score=82.23  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++||+||||||+|+++|..|+++|.+|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999974

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.38  E-value=0.00016  Score=76.87  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +||+|||||++|+.+|+.|+++|++|+|||+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            6899999999999999999999999999999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.37  E-value=0.00094  Score=74.35  Aligned_cols=100  Identities=14%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      .-+|+|||||++|+-+|..|++.   |.+|+|+|+.+.+-+.                +   .                 
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~----------------~---d-----------------  230 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG----------------F---D-----------------  230 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT----------------S---C-----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc----------------c---C-----------------
Confidence            35899999999999999999999   9999999988643110                0   0                 


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                                                         ..+...|.+.+++.|+                   ++++++++++
T Consensus       231 -----------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  256 (490)
T 1fec_A          231 -----------------------------------SELRKQLTEQLRANGI-------------------NVRTHENPAK  256 (490)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTTE-------------------EEEETCCEEE
T ss_pred             -----------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                               0122345556667776                   9999999999


Q ss_pred             EEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       200 v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++.++++ +.+++.   +|+    ++.+|.||.|-|.+...
T Consensus       257 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          257 VTKNADGTRHVVFE---SGA----EADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEESC
T ss_pred             EEEcCCCEEEEEEC---CCc----EEEcCEEEEccCCCcCc
Confidence            9887654 555442   453    68999999999987643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.37  E-value=0.00053  Score=76.61  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-+.     +.                                  
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d----------------------------------  216 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-----FD----------------------------------  216 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-----SC----------------------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-----cc----------------------------------
Confidence            357999999999999999999999999999987653110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       217 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  245 (500)
T 1onf_A          217 --------------------------------ESVINVLENDMKKNNI-------------------NIVTFADVVEIKK  245 (500)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             --------------------------------hhhHHHHHHHHHhCCC-------------------EEEECCEEEEEEE
Confidence                                            0122334555666676                   9999999999987


Q ss_pred             cCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       203 ~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++++ +.+++.   +|+  + ++.+|.||.|-|.....
T Consensus       246 ~~~~~~~v~~~---~g~--~-~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          246 VSDKNLSIHLS---DGR--I-YEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             SSTTCEEEEET---TSC--E-EEEESEEEECCCBCCTT
T ss_pred             cCCceEEEEEC---CCc--E-EEECCEEEECCCCCcCC
Confidence            6544 545442   453  1 38999999999987644

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.37  E-value=0.00049  Score=75.96  Aligned_cols=36  Identities=36%  Similarity=0.576  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            357999999999999999999999999999998643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.35  E-value=0.00016  Score=79.33  Aligned_cols=37  Identities=22%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY   41 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            4589999999999999999999999999999998754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.35  E-value=0.00077  Score=73.77  Aligned_cols=100  Identities=13%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...               .+                        
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~---------------~~------------------------  189 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER---------------VT------------------------  189 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT---------------TS------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc---------------hh------------------------
Confidence            357999999999999999999999999999987642110               00                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     -..+...|.+.+++.|+                   ++++++++++++.
T Consensus       190 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  219 (431)
T 1q1r_A          190 -------------------------------APPVSAFYEHLHREAGV-------------------DIRTGTQVCGFEM  219 (431)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------hHHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEe
Confidence                                           01223345556666776                   9999999999987


Q ss_pred             --cCCeE-EEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 --TDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 --~~~~v-~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                        +++.+ .+++   .+|+    ++.+|.||.|-|....
T Consensus       220 ~~~~~~v~~v~~---~~G~----~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          220 STDQQKVTAVLC---EDGT----RLPADLVIAGIGLIPN  251 (431)
T ss_dssp             CTTTCCEEEEEE---TTSC----EEECSEEEECCCEEEC
T ss_pred             ccCCCcEEEEEe---CCCC----EEEcCEEEECCCCCcC
Confidence              44554 3333   2453    6899999999997653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.34  E-value=0.001  Score=73.54  Aligned_cols=98  Identities=20%  Similarity=0.388  Sum_probs=75.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      -+|+|||||++|+-+|..|++. |.+|+++|+.+......               +                        
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~---------------~------------------------  200 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF---------------T------------------------  200 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT---------------S------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc---------------c------------------------
Confidence            5799999999999999999999 99999999875331100               0                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     ...+...|.+.+++.|+                   ++++++++++++.
T Consensus       201 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  230 (472)
T 3iwa_A          201 -------------------------------SKSLSQMLRHDLEKNDV-------------------VVHTGEKVVRLEG  230 (472)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEEc
Confidence                                           01233455666677776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++.+++++.   +|+    ++.+|.||.|-|...
T Consensus       231 ~~~~v~v~~~---~g~----~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          231 ENGKVARVIT---DKR----TLDADLVILAAGVSP  258 (472)
T ss_dssp             SSSBEEEEEE---SSC----EEECSEEEECSCEEE
T ss_pred             cCCeEEEEEe---CCC----EEEcCEEEECCCCCc
Confidence            7777776654   453    689999999999764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.34  E-value=0.00014  Score=80.14  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +..+||+|||+|++|+++|..|++.|.+|+|+||++..
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY   55 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            45689999999999999999999999999999999754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.33  E-value=0.00012  Score=80.91  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|..|++.|++|+|||+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            35899999999999999999999999999999973

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.33  E-value=0.00077  Score=73.19  Aligned_cols=100  Identities=26%  Similarity=0.397  Sum_probs=73.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.         ++      .+   .                    
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l---------~~------~~---~--------------------  184 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL---------VR------VL---G--------------------  184 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------HH------HH---C--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc---------hh------hc---C--------------------
Confidence            3579999999999999999999999999999876432         00      00   0                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       185 --------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  213 (410)
T 3ef6_A          185 --------------------------------RRIGAWLRGLLTELGV-------------------QVELGTGVVGFSG  213 (410)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEC
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEec
Confidence                                            1223345555666676                   9999999999987


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++....+++.   +|+    ++.+|+||.|-|..+.
T Consensus       214 ~~~~~~v~~~---dg~----~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          214 EGQLEQVMAS---DGR----SFVADSALICVGAEPA  242 (410)
T ss_dssp             SSSCCEEEET---TSC----EEECSEEEECSCEEEC
T ss_pred             cCcEEEEEEC---CCC----EEEcCEEEEeeCCeec
Confidence            6543344443   453    6899999999998753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.32  E-value=0.0012  Score=68.90  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            357999999999999999999999999999987643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.31  E-value=0.00012  Score=80.56  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+|+++|..|++.|.+|+||||..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            35899999999999999999999999999999973

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.29  E-value=0.0024  Score=70.92  Aligned_cols=101  Identities=20%  Similarity=0.243  Sum_probs=72.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+++.....                    .+.                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~--------------------~~d--------------------  224 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR--------------------GFD--------------------  224 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------TSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc--------------------cCC--------------------
Confidence            3579999999999999999999999999999753110                    000                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.+.+.+++.|+                   ++++++++.+++.
T Consensus       225 --------------------------------~~~~~~l~~~l~~~gv-------------------~~~~~~~v~~i~~  253 (488)
T 3dgz_A          225 --------------------------------QQMSSLVTEHMESHGT-------------------QFLKGCVPSHIKK  253 (488)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEEETEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            0122344555666676                   9999999999987


Q ss_pred             c-CCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          203 T-DQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       203 ~-~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      . ++.+.+++...++|+  +.++.+|.||.|-|..
T Consensus       254 ~~~~~~~v~~~~~~~g~--~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          254 LPTNQLQVTWEDHASGK--EDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             CTTSCEEEEEEETTTTE--EEEEEESEEEECSCEE
T ss_pred             cCCCcEEEEEEeCCCCe--eEEEECCEEEEcccCC
Confidence            4 445667766433342  3568999999999954

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.28  E-value=0.00017  Score=79.62  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      +.++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            35689999999999999999999999999999993

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.27  E-value=0.0023  Score=66.07  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            36899999999999999999999999999998764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.26  E-value=0.0016  Score=72.51  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      .-+|+|||||.+|+-+|..|++.   |.+|+|+|+.+.+-..                +   .                 
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~----------------~---d-----------------  234 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG----------------F---D-----------------  234 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT----------------S---C-----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc----------------c---C-----------------
Confidence            35799999999999999999999   9999999987643110                0   0                 


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                                                         ..+...|.+.+++.|+                   ++++++++++
T Consensus       235 -----------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  260 (495)
T 2wpf_A          235 -----------------------------------ETIREEVTKQLTANGI-------------------EIMTNENPAK  260 (495)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTTC-------------------EEEESCCEEE
T ss_pred             -----------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                               0122344555666776                   9999999999


Q ss_pred             EEEcCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       200 v~~~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      ++.++++ +.+++.   +|+    ++.+|.||.|-|.+...
T Consensus       261 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          261 VSLNTDGSKHVTFE---SGK----TLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             EEEcCCceEEEEEC---CCc----EEEcCEEEECCCCcccc
Confidence            9887654 545442   453    68999999999977543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.25  E-value=0.0012  Score=73.40  Aligned_cols=35  Identities=34%  Similarity=0.616  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            46899999999999999999999999999998763

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.24  E-value=0.0013  Score=72.45  Aligned_cols=99  Identities=18%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...               .+ +                      
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~-~----------------------  190 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK---------------YF-D----------------------  190 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT---------------TS-C----------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh---------------hh-h----------------------
Confidence            357999999999999999999999999999987643110               00 0                      


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       191 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  219 (452)
T 2cdu_A          191 --------------------------------KEFTDILAKDYEAHGV-------------------NLVLGSKVAAFEE  219 (452)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEEESSCEEEEEE
T ss_pred             --------------------------------hhHHHHHHHHHHHCCC-------------------EEEcCCeeEEEEc
Confidence                                            1123345556667776                   9999999999987


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++.++. +. . +|+    ++.+|.||.|-|...
T Consensus       220 ~~~~v~~-v~-~-~g~----~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          220 VDDEIIT-KT-L-DGK----EIKSDIAILCIGFRP  247 (452)
T ss_dssp             ETTEEEE-EE-T-TSC----EEEESEEEECCCEEE
T ss_pred             CCCeEEE-EE-e-CCC----EEECCEEEECcCCCC
Confidence            6666542 22 2 342    689999999999764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.23  E-value=0.002  Score=66.59  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            5799999999999999999999999999998764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.23  E-value=0.0013  Score=69.85  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            57999999999999999999999999999988643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.17  E-value=0.0018  Score=73.36  Aligned_cols=34  Identities=35%  Similarity=0.501  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            4799999999999999999999999999999764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.14  E-value=0.0016  Score=70.66  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            36899999999999999999999999999999874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.13  E-value=0.00032  Score=77.71  Aligned_cols=37  Identities=30%  Similarity=0.429  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      ..+||+|||||++||++|+.|++.|+ +|+|+|+++.+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            35899999999999999999999999 89999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.10  E-value=0.0027  Score=69.83  Aligned_cols=97  Identities=21%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+......               +                         
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------~-------------------------  187 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY---------------F-------------------------  187 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT---------------C-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc---------------C-------------------------
Confidence            579999999999999999999999999999876431100               0                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                    -..+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       188 ------------------------------d~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  218 (452)
T 3oc4_A          188 ------------------------------DKEMVAEVQKSLEKQAV-------------------IFHFEETVLGIEET  218 (452)
T ss_dssp             ------------------------------CHHHHHHHHHHHHTTTE-------------------EEEETCCEEEEEEC
T ss_pred             ------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEcc
Confidence                                          01233445566667776                   99999999999987


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      ++++.+++   +++     ++.+|.||.|-|.+.
T Consensus       219 ~~~v~v~~---~~g-----~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          219 ANGIVLET---SEQ-----EISCDSGIFALNLHP  244 (452)
T ss_dssp             SSCEEEEE---SSC-----EEEESEEEECSCCBC
T ss_pred             CCeEEEEE---CCC-----EEEeCEEEECcCCCC
Confidence            77774443   233     589999999999653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.09  E-value=0.00026  Score=78.87  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr   74 (712)
                      ++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            5899999999999999999999 9999999994

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.08  E-value=0.0032  Score=65.79  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            35799999999999999999999999999998764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.08  E-value=0.0023  Score=71.32  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar----~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      -+|+|||||++|+-+|..|++    .|++|+++++.+.+...               .+                     
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~---------------~l---------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK---------------IL---------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT---------------TS---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc---------------cC---------------------
Confidence            579999999999999999987    48899999876532100               00                     


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                                                       + ..+...+.+.+++.|+                   ++++++++++
T Consensus       225 ---------------------------------~-~~~~~~~~~~l~~~GV-------------------~v~~~~~V~~  251 (493)
T 1m6i_A          225 ---------------------------------P-EYLSNWTMEKVRREGV-------------------KVMPNAIVQS  251 (493)
T ss_dssp             ---------------------------------C-HHHHHHHHHHHHTTTC-------------------EEECSCCEEE
T ss_pred             ---------------------------------C-HHHHHHHHHHHHhcCC-------------------EEEeCCEEEE
Confidence                                             0 1223345556667776                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++.+++.+.+++.   +|+    ++.+|+||.|-|....
T Consensus       252 i~~~~~~~~v~l~---dG~----~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          252 VGVSSGKLLIKLK---DGR----KVETDHIVAAVGLEPN  283 (493)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCEEEC
T ss_pred             EEecCCeEEEEEC---CCC----EEECCEEEECCCCCcc
Confidence            9877766655442   453    6899999999997653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.07  E-value=0.00033  Score=80.09  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..++||+||||||+||++|..|+++|++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34589999999999999999999999999999984

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.06  E-value=0.0004  Score=81.33  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...+|+||||||+||++|..|+++|++|+|||+.+.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~  423 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK  423 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            457999999999999999999999999999999875

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.06  E-value=0.00039  Score=78.59  Aligned_cols=37  Identities=32%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+|||||++|+++|..|++.|++|+|+|+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4589999999999999999999999999999998754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.05  E-value=0.00026  Score=78.16  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-C------CCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTK-L------GIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar-~------Gi~v~lvEr~~~   77 (712)
                      ..++|+||||||+|+++|..|++ +      |++|+|||+.+.
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            35799999999999999999999 7      999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.04  E-value=0.0039  Score=64.70  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            5799999999999999999999999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.03  E-value=0.00033  Score=78.12  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr   74 (712)
                      .++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            36899999999999999999999 9999999995

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.03  E-value=0.0026  Score=70.75  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT  228 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence            35799999999999999999999999999998864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.01  E-value=0.0075  Score=67.52  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999974

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.95  E-value=0.0025  Score=68.12  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            58999999999999999999999999999998743

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.93  E-value=0.00055  Score=79.36  Aligned_cols=37  Identities=24%  Similarity=0.481  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+||+||||||+|+++|..|+++|++|+|||+.+..
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4579999999999999999999999999999998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.92  E-value=0.00057  Score=79.10  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|++.|++|+|+|+++.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999999999999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.0026  Score=70.18  Aligned_cols=99  Identities=20%  Similarity=0.290  Sum_probs=73.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                +                        
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~----------------~------------------------  209 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR----------------F------------------------  209 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------S------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc----------------c------------------------
Confidence            467999999999999999999999999999987632100                0                        


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                     -..+.+.|.+.+++.|+                   +++.++++++++.
T Consensus       210 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  239 (463)
T 4dna_A          210 -------------------------------DQDMRRGLHAAMEEKGI-------------------RILCEDIIQSVSA  239 (463)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEE
Confidence                                           01223445566677776                   9999999999998


Q ss_pred             cCCe-EEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ++++ +.++. . ++|    . +.+|.||.|-|....
T Consensus       240 ~~~~~~~v~~-~-~~g----~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          240 DADGRRVATT-M-KHG----E-IVADQVMLALGRMPN  269 (463)
T ss_dssp             CTTSCEEEEE-S-SSC----E-EEESEEEECSCEEES
T ss_pred             cCCCEEEEEE-c-CCC----e-EEeCEEEEeeCcccC
Confidence            7666 34431 2 244    2 899999999997654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.92  E-value=0.004  Score=64.95  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+|+++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            357999999999999999999999999999988643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.91  E-value=0.0052  Score=69.02  Aligned_cols=99  Identities=19%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..-+++|||||+.|+=+|..|++.|.+|+|+++....   +                 +..                   
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L---~-----------------~~D-------------------  262 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL---R-----------------GFD-------------------  262 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS---T-----------------TSC-------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc---c-----------------ccc-------------------
Confidence            3467999999999999999999999999999874321   0                 110                   


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                                                       .++...|.+.+++.|+                   +++.++++.+++
T Consensus       263 ---------------------------------~ei~~~l~~~l~~~gi-------------------~~~~~~~v~~~~  290 (542)
T 4b1b_A          263 ---------------------------------QQCAVKVKLYMEEQGV-------------------MFKNGILPKKLT  290 (542)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTTC-------------------EEEETCCEEEEE
T ss_pred             ---------------------------------hhHHHHHHHHHHhhcc-------------------eeecceEEEEEE
Confidence                                             1122345555666776                   999999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      ..++.+++.+.   +++    ++.+|.|+.|-|.+-.
T Consensus       291 ~~~~~~~v~~~---~~~----~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          291 KMDDKILVEFS---DKT----SELYDTVLYAIGRKGD  320 (542)
T ss_dssp             EETTEEEEEET---TSC----EEEESEEEECSCEEES
T ss_pred             ecCCeEEEEEc---CCC----eEEEEEEEEcccccCC
Confidence            99998776653   332    5679999999996543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.90  E-value=0.00059  Score=80.69  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|+.|+++|++|+|||++..+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            3479999999999999999999999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.90  E-value=0.0077  Score=62.62  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            5799999999999999999999999999998764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.88  E-value=0.0011  Score=75.44  Aligned_cols=40  Identities=30%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~~   78 (712)
                      |.+.++|++|||+|++|+++|..|++ .|++|+|||+....
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            33567999999999999999999999 79999999998755

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.86  E-value=0.0006  Score=82.27  Aligned_cols=37  Identities=30%  Similarity=0.499  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++||+||||||+||++|+.|+++|++|+|||+.+.+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4589999999999999999999999999999998653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.84  E-value=0.0006  Score=76.00  Aligned_cols=37  Identities=16%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .+++|+||||||+|+++|..|+++  |.+|+|||+.+..
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            468999999999999999999887  8999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.81  E-value=0.0007  Score=74.76  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~   78 (712)
                      .++|+||||||+|+.+|..|+++|  ++|+|||+.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            479999999999999999999999  999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.80  E-value=0.0046  Score=65.45  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+|+++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            4799999999999999999999999999998764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.79  E-value=0.00065  Score=76.52  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++|+||||||++|+++|..|++ |.+|+|+|+.+..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            356999999999999999999999 9999999998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.78  E-value=0.00089  Score=81.31  Aligned_cols=36  Identities=25%  Similarity=0.557  Sum_probs=33.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      ..+|+||||||+||++|..|+++|+ +|+||||.+.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            5799999999999999999999999 79999997643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.77  E-value=0.008  Score=62.02  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            357999999999999999999999999999987643

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.75  E-value=0.00081  Score=75.44  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~   77 (712)
                      .++|+||||||++|+++|..|++ .|++|+|||+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46999999999999999999998 6899999999865

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.68  E-value=0.012  Score=60.49  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            357999999999999999999999999999987643

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.65  E-value=0.0011  Score=75.28  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      ..++|+||||||.+|+++|..|++.| ++|+|||+...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 89999999876

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.64  E-value=0.0012  Score=73.91  Aligned_cols=38  Identities=24%  Similarity=0.448  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||+|||+|++|+++|..|++.|++|+|||+....
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            35689999999999999999999999999999998743

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.63  E-value=0.0069  Score=62.90  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            35799999999999999999999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.62  E-value=0.0072  Score=63.23  Aligned_cols=35  Identities=11%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            35799999999999999999999999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.62  E-value=0.0061  Score=69.37  Aligned_cols=105  Identities=19%  Similarity=0.331  Sum_probs=74.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.....     +.                                   
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-----------------------------------  227 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-----ID-----------------------------------  227 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----SC-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----CC-----------------------------------
Confidence            57999999999999999999999999999987643110     00                                   


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+...|.+.+++.|+                   ++++++++++++.+
T Consensus       228 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  257 (588)
T 3ics_A          228 -------------------------------YEMAAYVHEHMKNHDV-------------------ELVFEDGVDALEEN  257 (588)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEGG
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCeEEEEecC
Confidence                                           1122344555666676                   89999999999876


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccCCCchh--hcccCCCc
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGIDL  247 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V--R~~lgi~~  247 (712)
                      +++  +++.   +|+    ++.+|.||.|-|.....  -+.+|+..
T Consensus       258 ~~~--v~~~---~g~----~i~~D~Vi~a~G~~p~~~~l~~~g~~~  294 (588)
T 3ics_A          258 GAV--VRLK---SGS----VIQTDMLILAIGVQPESSLAKGAGLAL  294 (588)
T ss_dssp             GTE--EEET---TSC----EEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             CCE--EEEC---CCC----EEEcCEEEEccCCCCChHHHHhcCceE
Confidence            665  3332   453    68999999999987543  33445543

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.55  E-value=0.00094  Score=77.02  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--------CCEEEEcCCC-CC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG--------IKCSVLEKNK-AF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G--------i~v~lvEr~~-~~   78 (712)
                      ..+|+|||||++||++|..|+++|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999999        9999999987 54

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.49  E-value=0.03  Score=63.70  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999986

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.46  E-value=0.0061  Score=66.83  Aligned_cols=34  Identities=18%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            4899999999999999999999999999998763

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.46  E-value=0.0017  Score=73.69  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~   76 (712)
                      ...+|+||||||.+|+++|..|++. |++|+|||+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4569999999999999999999975 89999999987

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.45  E-value=0.0021  Score=71.90  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++|++|||+|++|+++|..|++.|.+|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            34699999999999999999999999999999998643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.42  E-value=0.0022  Score=72.42  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~   78 (712)
                      .++||+|||+|++|+++|..|++. |.+|+|||+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            569999999999999999999998 9999999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.41  E-value=0.0084  Score=66.10  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-.|+|||||++|+-+|..|++.|.+|+|+++.+..
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            357999999999999999999999999999987643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.39  E-value=0.018  Score=64.51  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            5799999999999999999999999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.21  E-value=0.013  Score=64.06  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  181 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK  181 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecc
Confidence            4799999999999999999999999999998764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.08  E-value=0.0022  Score=72.51  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr~~~~   78 (712)
                      ++|+||||||++|+++|..|++ .|++|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 69999999997644

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.82  E-value=0.0056  Score=68.86  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHH
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr   96 (712)
                      .-+|+|||+|.+|+-+|..|++.|.+|+|++|.+.........-+.+...+.|+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIK  231 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHH
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHH
Confidence            357999999999999999999999999999999873111112345666666666

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.81  E-value=0.0079  Score=68.44  Aligned_cols=38  Identities=11%  Similarity=0.300  Sum_probs=35.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      +++||+|||+|..|..+|..|++.|.+|++|||++...
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            36999999999999999999999999999999998764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.71  E-value=0.082  Score=58.05  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLT--------------------KLGI-KCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~La--------------------r~Gi-~v~lvEr~~~~   78 (712)
                      .-+|+|||+|.+|+-+|..|+                    +.|+ +|+|++|+...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            357999999999999999999                    6798 69999998743

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.68  E-value=0.015  Score=65.53  Aligned_cols=55  Identities=13%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHh
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRK   97 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~   97 (712)
                      .-+|+|||+|.+|+-+|..|++.+.+|+|++|.+.........-+.+..++.|+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~  239 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRN  239 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHH
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHh
Confidence            4579999999999999999999999999999998631111123355666666653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.51  E-value=0.034  Score=64.51  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             cCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVG--aGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||  +|.+|+-+|..|++.|.+|+++++.+.
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~  559 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ  559 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence            4599999  999999999999999999999998764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.43  E-value=0.013  Score=62.96  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            3589999999999999999999999999999998653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.41  E-value=0.011  Score=54.55  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|+|+|..|+.+|..|.+.|++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36799999999999999999999999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.34  E-value=0.017  Score=52.33  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+-.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            346899999999999999999999999999999753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.29  E-value=0.019  Score=52.69  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34679999999999999999999999999999974

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.20  E-value=0.092  Score=57.58  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--------------------CC-CEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--------------------GI-KCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--------------------Gi-~v~lvEr~~~~   78 (712)
                      .-+|+|||+|.+|+-+|..|++.                    |. +|+|++|+...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            35799999999999999999974                    65 89999988643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.10  E-value=0.017  Score=51.66  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.83  E-value=0.022  Score=51.35  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|+|+|+|..|..+|..|.++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=94.76  E-value=0.055  Score=54.91  Aligned_cols=33  Identities=12%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            358999999999999999999999 999998765

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.74  E-value=0.072  Score=64.12  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||+|+.|+-+|..|++.|.+|+|||+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~  318 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSS  318 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc
Confidence            5799999999999999999999999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.66  E-value=0.023  Score=49.04  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~   76 (712)
                      ..|+|+|+|..|..++..|.++| .++++++|++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            57999999999999999999999 8999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.36  E-value=0.029  Score=57.86  Aligned_cols=35  Identities=17%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            47999999999999999999999999999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.30  E-value=0.19  Score=60.95  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -+|+|||||.+|+-+|..|.+.|. +|+|++|++
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999997 899999876

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.26  E-value=0.037  Score=49.58  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|+|+|+|..|..+|..|.+.|++|+++++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=94.25  E-value=0.11  Score=60.40  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             cCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVG--aGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|+|||  ||.+|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799998  99999999999999999999999876

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.15  E-value=0.044  Score=51.85  Aligned_cols=34  Identities=26%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~   76 (712)
                      ..+|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            46899999999999999999999 99999999865

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.08  E-value=0.24  Score=53.81  Aligned_cols=44  Identities=11%  Similarity=-0.031  Sum_probs=29.0

Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC
Q 005134          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~  235 (712)
                      ++++++++++++.  +++++.....++.+.+..++.+|+||.|-|.
T Consensus       224 ~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          224 EAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             EEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             EEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            9999999999864  4554443322221112357999999999874

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.99  E-value=0.044  Score=56.52  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|.|||+|..|..+|..|+++|++|+++++++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=93.91  E-value=0.15  Score=58.92  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSV   71 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~l   71 (712)
                      .-+|+|||||++|+-+|..|++.|.++++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            35899999999999999999999976643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.79  E-value=0.039  Score=53.93  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|+|||+|..|..+|..|.++|++|+++|+++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3699999999999999999999999999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.49  E-value=0.061  Score=56.29  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...++|.|||||-.|.++|..|++.|+ +++++|+..
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            345689999999999999999999998 999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.33  E-value=0.058  Score=55.38  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=32.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||..|+-+|..|++.|.+|+|+||....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            57999999999999999999999999999987653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.03  E-value=0.082  Score=56.84  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      -+|+|||+|++|+-+|..|++.|.+|+++|+.+.+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            579999999999999999999999999999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.79  E-value=0.1  Score=55.16  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +..++|.|||+|-.|.++|..|++.|++|++++|++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            344789999999999999999999999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.66  E-value=0.091  Score=57.66  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  212 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF  212 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC
Confidence            3579999999999999999999999999999987553

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.43  E-value=0.1  Score=54.11  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      |.+...+|.|||+|..|.++|..|++.|+ +++++|+.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            33445689999999999999999999999 999999863

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.31  E-value=0.1  Score=54.24  Aligned_cols=33  Identities=30%  Similarity=0.600  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|||+|-.|.++|..|++.|.+|+++.|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            679999999999999999999999999999853

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.18  E-value=0.13  Score=53.91  Aligned_cols=32  Identities=38%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++|.|||+|-.|.++|..|++.|.+|++++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            68999999999999999999999999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.89  E-value=0.15  Score=49.89  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....+|||||||.+|...+..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            44578999999999999999999999999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.68  E-value=0.15  Score=52.98  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ...+|.|||+|-+|.++|+.|+..|+  +++++|...
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34799999999999999999999998  899999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.59  E-value=0.14  Score=53.04  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=29.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ++|+|||+|-.|.++|..|++.|.+|+++.|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            57999999999999999999999999999985

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.50  E-value=0.12  Score=56.53  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...+|+|||.|.+|+++|..|.++|++|.+.|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34689999999999999999999999999999876

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.33  E-value=0.13  Score=56.02  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||.|++|+++|..|+++|++|+++|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            57999999999999999999999999999988753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.31  E-value=0.17  Score=51.40  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +|.|||+|..|..+|..|++.|++|++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999999764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=91.26  E-value=0.17  Score=55.73  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            357999999999999999999999999999998764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.17  E-value=4.2  Score=44.48  Aligned_cols=49  Identities=10%  Similarity=0.083  Sum_probs=35.4

Q ss_pred             ceEEeCcEEEEEEEcCCe------EEEEEEeccCCceeeEEEEecEEEeccCCCchh
Q 005134          189 REILMGHECVSVSATDQC------INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (712)
Q Consensus       189 ~~v~~g~~v~~v~~~~~~------v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~V  239 (712)
                      .+|+++++|++|+.++++      +.|++.. .+|+. ..+++||.||.|-......
T Consensus       256 ~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~-~~g~~-~~~~~ad~VI~a~p~~~l~  310 (504)
T 1sez_A          256 DELRLNSRVLELSCSCTEDSAIDSWSIISAS-PHKRQ-SEEESFDAVIMTAPLCDVK  310 (504)
T ss_dssp             TTEETTCCEEEEEEECSSSSSSCEEEEEEBC-SSSSC-BCCCEESEEEECSCHHHHH
T ss_pred             ceEEcCCeEEEEEecCCCCcccceEEEEEcC-CCCcc-ceeEECCEEEECCCHHHHH
Confidence            389999999999988877      6676642 23310 0367899999998876543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.06  E-value=0.16  Score=54.79  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +..|+|||.|..|..+|..|.++|++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999998864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.00  E-value=0.19  Score=51.18  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|.|||+|..|...|..|+++|++|+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.99  E-value=0.068  Score=58.67  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|+|+|+|-+|..+|..|...|++|+|||+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            6799999999999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.88  E-value=0.18  Score=53.83  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|+|++|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.86  E-value=0.18  Score=51.81  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|-.|..+|..|++.|++|++++|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.80  E-value=0.16  Score=52.05  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|||+|-.|.++|..|++.|.+|+++.|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.80  E-value=0.22  Score=48.22  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|.|||+|-.|.++|..|++.|.+|++++|.+.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999998865

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.75  E-value=0.18  Score=55.08  Aligned_cols=34  Identities=26%  Similarity=0.564  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|.|||+|-.|+.+|..|++.|++|+++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            5799999999999999999999999999998753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.71  E-value=0.24  Score=51.20  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|.|||+|-.|..+|..|.+.|++|++++|++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.67  E-value=0.18  Score=55.48  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..++|.|||+|-.|+.+|..|++.|++|+++++++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34789999999999999999999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.60  E-value=0.19  Score=51.95  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|+|||+|-+|.++|..|++.|+  +|+++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999999999  999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=90.59  E-value=2.9  Score=45.75  Aligned_cols=44  Identities=9%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             eEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       190 ~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      +|+++++|++|+.++++|+|++.   +|+....+++||+||.|=+..
T Consensus       254 ~i~~~~~V~~I~~~~~~v~v~~~---~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          254 KVHFNAQVIKIQQNDQKVTVVYE---TLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             GEESSCEEEEEEECSSCEEEEEE---CSSSCCCEEEESEEEECSCHH
T ss_pred             ccccCCEEEEEEECCCeEEEEEe---cCCcccceEEeCEEEECCChH
Confidence            79999999999999889887765   332112358999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.55  E-value=0.19  Score=52.26  Aligned_cols=35  Identities=34%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ....+|.|||+|.+|.++|..|+..|+  +++++|..
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            344689999999999999999999998  89999974

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.52  E-value=0.2  Score=52.65  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++|.|||+|-.|..+|..|++.|++|++++|++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.49  E-value=0.21  Score=51.42  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|.|||.|-.|..+|..|++.|++|++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999865

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.40  E-value=0.23  Score=51.82  Aligned_cols=33  Identities=21%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+|.|||||-.|.++|..|++.|+ +|+++|++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999999 999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=90.31  E-value=0.21  Score=54.87  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=33.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+...
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  216 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL  216 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            3579999999999999999999999999999987653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.30  E-value=0.24  Score=51.57  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      ...+|.|||+|-+|.++|..|+..|+ +++++|..+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            34689999999999999999999999 9999998763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=90.07  E-value=0.16  Score=52.35  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC-----C-CCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL-----G-IKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~-----G-i~v~lvEr   74 (712)
                      ++|.|||+|..|.++|..|++.     | .+|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5799999999999999999999     9 99999987

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.04  E-value=0.26  Score=51.16  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+|.|||+|.+|.++|..|+..|+ ++.++|..+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            4689999999999999999999998 999999876

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.99  E-value=0.23  Score=51.48  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|.|||||.-|..-|..++.+|++|+|+|..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=89.98  E-value=0.21  Score=51.17  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=33.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|.|||.|-.|..+|..|+++|++|++++|++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999998753

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=89.89  E-value=0.21  Score=55.20  Aligned_cols=103  Identities=19%  Similarity=0.342  Sum_probs=77.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.....     +.                                  
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d----------------------------------  238 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-----MD----------------------------------  238 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-----SC----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-----CC----------------------------------
Confidence            357999999999999999999999999999988743110     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.|.+.+++.|+                   +++.++++++++.
T Consensus       239 --------------------------------~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~  267 (491)
T 3urh_A          239 --------------------------------GEVAKQLQRMLTKQGI-------------------DFKLGAKVTGAVK  267 (491)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEE
Confidence                                            1122334555566676                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +++++.+++.+.++|+  ..++.+|.||.|-|...
T Consensus       268 ~~~~~~v~~~~~~~g~--~~~i~~D~Vi~a~G~~p  300 (491)
T 3urh_A          268 SGDGAKVTFEPVKGGE--ATTLDAEVVLIATGRKP  300 (491)
T ss_dssp             ETTEEEEEEEETTSCC--CEEEEESEEEECCCCEE
T ss_pred             eCCEEEEEEEecCCCc--eEEEEcCEEEEeeCCcc
Confidence            8888888776433342  35789999999999654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.84  E-value=0.25  Score=51.23  Aligned_cols=33  Identities=12%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+|.|||+|-.|.++|..|++.|+ +|+++|+.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            579999999999999999999999 999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=89.81  E-value=0.22  Score=54.58  Aligned_cols=34  Identities=24%  Similarity=0.131  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|+|||||.+|+=+|..|++.|.+|+|+++++.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            5799999999999999999999999999998865

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.79  E-value=0.23  Score=49.65  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|+..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            35789999999999999999999999 789999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=89.79  E-value=0.25  Score=50.91  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +|.|||||-+|.++|..|+..|+  +++++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999999  999999863

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.75  E-value=0.16  Score=51.33  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....|||||||.+|+..+..|.+.|.+|+||+...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45789999999999999999999999999998643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=89.71  E-value=0.31  Score=48.94  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~   76 (712)
                      .++|.|||+|-.|..+|..|++.|++ |.+++|.+
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            46899999999999999999999999 88998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.68  E-value=0.2  Score=53.03  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|+|.+|+.+|..|...|.+|+++++++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998853

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.47  E-value=0.31  Score=50.69  Aligned_cols=33  Identities=21%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+|.|||||-+|.++|..|+..|+ +++++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            589999999999999999999998 999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=89.39  E-value=0.29  Score=53.29  Aligned_cols=36  Identities=19%  Similarity=0.002  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~   78 (712)
                      .-+|+|||||++|+=+|..|++.|.+ |+|++|.+..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            35799999999999999999999999 9999998643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=89.31  E-value=0.27  Score=53.97  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~-Gi-~v~lvEr~~~   77 (712)
                      ++|.|||+|-.|+.+|..|+++ |+ +|+++++++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5799999999999999999999 99 9999999976

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.31  E-value=0.11  Score=46.86  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|||+|..|..+|..|.+.|+++++++|.+
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3679999999999999999999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=89.29  E-value=0.26  Score=55.28  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=40.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHH
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr   96 (712)
                      .-+|+|||+|.+|+-+|..|++.|.+|+||+|.+.......-.-+++...+.|+
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~  244 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQK  244 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHH
Confidence            468999999999999999999999999999999863111112335666666666

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.24  E-value=0.21  Score=48.70  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~l-vEr~~~   77 (712)
                      ++|.|||+|-.|.++|..|.+.|++|++ ++|++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            6899999999999999999999999999 887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.24  E-value=0.33  Score=50.23  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +..+|.|||.|..|.++|..|.+.|+  +|+++++++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            34689999999999999999999999  899999765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.18  E-value=0.27  Score=51.18  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHH-HHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLV-LSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~-~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||.|.+|++ +|..|.++|++|.+.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            57999999999996 89999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.17  E-value=0.27  Score=53.12  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..++|.|||+|-.|+.+|..|++ |++|+++++.+.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            33689999999999999999998 999999998753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=89.16  E-value=0.5  Score=52.56  Aligned_cols=36  Identities=14%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            679999999999999999999999999999987653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.15  E-value=0.31  Score=53.03  Aligned_cols=37  Identities=24%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+.+.|||.|-.|+.+|..|++.|++|+++++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3478999999999999999999999999999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.10  E-value=0.3  Score=52.07  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|+|+|++|+.++..|...|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.02  E-value=0.27  Score=51.01  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            46899999999999999999999999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.99  E-value=0.3  Score=50.37  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=88.98  E-value=0.33  Score=50.08  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+|.|||||-+|..+|..|+..|+ ++.++|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            579999999999999999999997 999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.96  E-value=0.49  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999999875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.95  E-value=0.31  Score=50.29  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|||+|-.|.++|..|+ .|.+|+++.|.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            67999999999999999999 999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.92  E-value=0.37  Score=53.01  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.87  E-value=0.29  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|+|+|.+|+.+|..|...|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998753

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.86  E-value=0.34  Score=50.04  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .++|.|||.|-.|..+|..|++.|+ +|++++|++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3689999999999999999999999 999999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.86  E-value=0.4  Score=46.59  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|.|||+|-.|..+|..|.+.|++|.+++|++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=88.83  E-value=0.5  Score=48.64  Aligned_cols=34  Identities=21%  Similarity=0.491  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|.|||.|-.|..+|..|.+.|++|++++|.+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=88.72  E-value=0.11  Score=51.13  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      ..++|.|||+|..|.++|..|+++|++|+++++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            446899999999999999999999999999988

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.66  E-value=0.31  Score=50.49  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ..++|.|||||-+|.++|..|+..|+  ++.++|..
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45799999999999999999999986  78899865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=88.66  E-value=0.35  Score=49.90  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~   76 (712)
                      +|.|||+|-+|.++|..|++.  |.+|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999985  78999999975

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.45  E-value=0.32  Score=51.46  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            679999999999999999999999999999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=88.40  E-value=0.4  Score=51.91  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|.|||.|-+||.+|..|+++|++|+.||.++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            579999999999999999999999999999764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=88.26  E-value=0.29  Score=53.15  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-+|+.+|..|++.|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=88.19  E-value=0.32  Score=49.71  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|..|..+|..|.+.|++|.++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.06  E-value=0.38  Score=49.83  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...+|.|||+|-.|.++|..|++.|.+|+++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3468999999999999999999999999999 653

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.90  E-value=0.52  Score=47.53  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..|+|.|+|..|..++..|.++|++|+++.|+...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            57999999999999999999999999999998643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=87.83  E-value=0.32  Score=53.90  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--------------CCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--------------GIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--------------Gi~v~lvEr~~~~~   79 (712)
                      ..|+||||||+|+=+|..|+..              .++|+|+|+.+...
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il  267 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL  267 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence            3699999999999999998754              37899999998753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.68  E-value=0.19  Score=49.48  Aligned_cols=34  Identities=18%  Similarity=0.069  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +..|+|+|+|..|..+|..|.++|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            4579999999999999999999999 999998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.65  E-value=0.38  Score=49.29  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||+|.+|.++|..|++.|+  ++.++|+.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            369999999999999999999998  899999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.57  E-value=0.4  Score=48.79  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|.|||.|-.|..+|..|++.|++|++++|++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4699999999999999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.50  E-value=0.49  Score=53.20  Aligned_cols=36  Identities=14%  Similarity=0.372  Sum_probs=33.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      ..|+|||+|..|..+|..|.+.|++|+++|+++...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~  384 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPV  384 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHH
Confidence            689999999999999999999999999999998753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=87.46  E-value=0.42  Score=49.39  Aligned_cols=33  Identities=18%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||+|.+|.++|..|++.|+  +++++|..+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            469999999999999999999998  899999876

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=87.45  E-value=0.59  Score=48.55  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ..+|.|||+|.+|.++|..|+..|+  +++++|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            4689999999999999999999998  899999743

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.45  E-value=0.37  Score=49.29  Aligned_cols=39  Identities=18%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             cCCCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           37 IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        37 ~~~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.....+.+|.|||+|.-|...|..|+ +|++|+++|+.+
T Consensus         6 ~~~~~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A            6 IHHHHHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             cccccCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            334456689999999999999999999 999999999875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.34  E-value=0.5  Score=47.16  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G----i~v~lvEr~~~~   78 (712)
                      .++|.|||+|-.|.++|..|.+.|    .+|.+++|++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            357999999999999999999999    699999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=87.26  E-value=0.46  Score=49.52  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++.+|.|||+|-.|.++|..|++.|.+|++++|.+
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            345889999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.22  E-value=0.75  Score=47.09  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVG-aGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.||| +|-.|.++|..|++.|++|+++++.+.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4799999 999999999999999999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.07  E-value=0.48  Score=46.97  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....+|.|||+|-.|.++|..|++.|++|++++|++.
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3457899999999999999999999999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=86.95  E-value=0.56  Score=51.23  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~   78 (712)
                      .-+|+|||||.+|+-+|..|.+.|.+ |+|++|++..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            35799999999999999999999985 9999988753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=86.86  E-value=0.48  Score=49.24  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ....+|.|||+|.+|.++|..|+..|+  ++.|+|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            344789999999999999999999998  89999974

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=86.78  E-value=0.34  Score=51.23  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-.|.++|..|++.|++|++++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=86.67  E-value=0.43  Score=49.48  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      +|.|||+|-.|.++|..|++.|++|++++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=86.66  E-value=0.69  Score=48.41  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|.|||.|..|.++|..|.+.|++|+++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.61  E-value=0.47  Score=50.28  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|+|+|.+|+.+|..|+..|.+|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3679999999999999999999999999998764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.42  E-value=0.28  Score=50.87  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      ++|.|||.|-.|..+|..|++.| ++|+++++.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            57999999999999999999999 99999999864

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=86.39  E-value=5.4  Score=35.37  Aligned_cols=144  Identities=8%  Similarity=0.025  Sum_probs=73.3

Q ss_pred             CCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHH----HHHHhhhhcC-CceEEEEEcCCCCcchhh
Q 005134          553 NPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLAR----AALKVAEDFK-VPTKVCVLWPAGTTNEVE  627 (712)
Q Consensus       553 ~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~----aa~~~~~~~g-~~~~~~~~~~~~~~~~~~  627 (712)
                      .+|..+|.+-+...+|+.+++-++-|.    .+||.+-. ..+..+.    ...++.+... ..+.++.|..+..+.+.-
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk----~vll~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~   77 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGEVVKLSDLKGQ----VVIVNFWA-TWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV   77 (154)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTS----EEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEehhhcCCC----EEEEEEEC-CCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHH
Confidence            589999999998767777888887442    56665532 1122222    2333444443 356777773332100000


Q ss_pred             hhh-ccccCCCCcccchhhhcccCCccchhhhhcccCCc-eEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhhCCCCCC
Q 005134          628 FRS-AAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMG-AILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVN  705 (712)
Q Consensus       628 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g-avLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~~~~~~~  705 (712)
                      ..- ..-.-+|..+.|.        .....+.+++..-- .+||-+||.|.++..+..+.+ ..++.+.|+.++...+.+
T Consensus        78 ~~~~~~~~~~~~~~~d~--------~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~-~~~l~~~l~~l~~~~~~~  148 (154)
T 3kcm_A           78 EEFFRKTGFTLPVLLDA--------DKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWD-HPEVIAFLNNELSKAREG  148 (154)
T ss_dssp             HHHHHHHCCCCCEEECT--------TCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTT-SHHHHHHHHTC-------
T ss_pred             HHHHHHcCCCeeEEecC--------chHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccc-cHHHHHHHHHHHHHhhhc
Confidence            000 0001123222331        13455667777665 889999999998876442223 357889999988777666


Q ss_pred             CcccC
Q 005134          706 VEGTT  710 (712)
Q Consensus       706 ~~~~~  710 (712)
                      -++++
T Consensus       149 ~~~~~  153 (154)
T 3kcm_A          149 HHHHH  153 (154)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            55543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.37  E-value=0.54  Score=51.46  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=86.27  E-value=0.55  Score=51.65  Aligned_cols=99  Identities=22%  Similarity=0.445  Sum_probs=75.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+....                .+   .                    
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------------~~---~--------------------  231 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR----------------NF---D--------------------  231 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS---C--------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc----------------cc---C--------------------
Confidence            46899999999999999999999999999998764310                00   0                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       232 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~~  260 (484)
T 3o0h_A          232 --------------------------------YDLRQLLNDAMVAKGI-------------------SIIYEATVSQVQS  260 (484)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEESSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEe
Confidence                                            1122345555666676                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++++.+++.   +|+    ++.+|.||.|.|..+.
T Consensus       261 ~~~~v~v~~~---~g~----~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          261 TENCYNVVLT---NGQ----TICADRVMLATGRVPN  289 (484)
T ss_dssp             CSSSEEEEET---TSC----EEEESEEEECCCEEEC
T ss_pred             eCCEEEEEEC---CCc----EEEcCEEEEeeCCCcC
Confidence            8888765543   453    6899999999997654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=86.07  E-value=0.54  Score=48.34  Aligned_cols=33  Identities=21%  Similarity=0.533  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      .+|.|||||-+|..+|..|+..|+  +++|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            689999999999999999999998  999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=86.06  E-value=0.59  Score=49.27  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..++|.|||.|-.|..+|..|++.|++|++++|.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34689999999999999999999999999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.05  E-value=0.45  Score=47.94  Aligned_cols=33  Identities=27%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|+|.|||..|..++..|.++|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999998865

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=86.03  E-value=0.8  Score=48.58  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....|+|+|+|..|..++..+++.|++|++++..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            346799999999999999999999999999987654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=86.02  E-value=0.51  Score=48.89  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +|.|||+|-.|.++|..|++.|+  +++++|+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            68999999999999999999999  999999863

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=86.02  E-value=0.72  Score=50.62  Aligned_cols=35  Identities=11%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|.|||.|-.|..+|..|+++|++|++++|.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998763

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.00  E-value=0.67  Score=48.03  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~G----i~v~lvEr~~~   77 (712)
                      .++|.|||+|-.|.++|..|.+.|    .+|++++|.+.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            457999999999999999999999    79999998753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=86.00  E-value=0.47  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||.|-.|..+|..|++.|++|++++|++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3699999999999999999999999999998764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=85.97  E-value=8.1  Score=44.09  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             ccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          187 QGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       187 ~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      ...+|+++++|++|+.++++|+|++.+..++. ...+++||+||.|=...
T Consensus       409 ~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~-~~~~~~Ad~VI~tvP~~  457 (662)
T 2z3y_A          409 EGLDIKLNTAVRQVRYTASGCEVIAVNTRSTS-QTFIYKCDAVLCTLPLG  457 (662)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEESSCTT-CEEEEEESEEEECCCHH
T ss_pred             hcCceecCCeEEEEEECCCcEEEEEeecccCC-CCeEEEeCEEEECCCHH
Confidence            34589999999999999999988876421111 12479999999987644

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=85.94  E-value=0.61  Score=48.24  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ..+|.|||+|.+|.++|+.|+..|+  +++++|.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3689999999999999999999886  79999975

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=85.90  E-value=0.36  Score=50.65  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-------i~v~lvEr~~~   77 (712)
                      ++|.|||+|-.|.++|..|++.|       .+|++++|.+.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            57999999999999999999999       89999998865

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=85.85  E-value=0.66  Score=50.98  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .|.+.+|.|||+|-.|..+|..|+++|++|.+++|.+
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3567889999999999999999999999999999874

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.83  E-value=0.47  Score=50.96  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-+|+.+|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=85.71  E-value=0.55  Score=51.62  Aligned_cols=100  Identities=22%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.....                    .+.                     
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~--------------------~~d---------------------  226 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR--------------------GFD---------------------  226 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST--------------------TSC---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--------------------ccC---------------------
Confidence            479999999999999999999999999999742110                    000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       227 -------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~~  256 (483)
T 3dgh_A          227 -------------------------------QQMAELVAASMEERGI-------------------PFLRKTVPLSVEKQ  256 (483)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------CEEETEEEEEEEEC
T ss_pred             -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence                                           0122344555666676                   89999999999886


Q ss_pred             CC-eEEEEEEeccCCceeeEEEEecEEEeccCCC
Q 005134          204 DQ-CINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (712)
Q Consensus       204 ~~-~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~  236 (712)
                      ++ .+.+++.+..++  +..++.+|.||.|-|..
T Consensus       257 ~~~~~~v~~~~~~~~--~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          257 DDGKLLVKYKNVETG--EESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             TTSCEEEEEEETTTC--CEEEEEESEEEECSCEE
T ss_pred             CCCcEEEEEecCCCC--ceeEEEcCEEEECcccc
Confidence            55 466666643223  24578999999999965

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.69  E-value=0.55  Score=45.88  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3467999999 99999999999999999999998753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.61  E-value=0.57  Score=49.81  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....|+|+|+|.+|+.+|..|+..|.+|+++++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34679999999999999999999999999998763

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=85.61  E-value=0.63  Score=47.49  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=32.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ....+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            456899999999999999999999999 788898775

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=85.60  E-value=7.7  Score=34.19  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=72.8

Q ss_pred             CCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHH----HHHHHhhhhcCC-ceEEEEEcCCCCcchh
Q 005134          552 ANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLA----RAALKVAEDFKV-PTKVCVLWPAGTTNEV  626 (712)
Q Consensus       552 ~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~----~aa~~~~~~~g~-~~~~~~~~~~~~~~~~  626 (712)
                      -.+|..+|.+-|.. +++.+++-|+-|.    .+||.+-. ..+..+    ....++.++..- .+.++.|..+... + 
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk----~vll~f~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~-~-   74 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLSDKTGS----VVYLDFWA-SWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKT-G-   74 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGGGGTTS----EEEEEEEC-TTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSH-H-
T ss_pred             CCCCCcCCceEeeC-CCCeEeHHHhCCC----EEEEEEEC-CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCH-H-
Confidence            35899999999987 7778888887553    56665432 112222    122333333321 2666666322111 0 


Q ss_pred             hhhhcc--ccCCCCcccchhhhcccCCccchhhhhcccCCc-eEEEcCCceEEEeeCCCCCCChHHHHHHHHHHhhCCCC
Q 005134          627 EFRSAA--ELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMG-AILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKP  703 (712)
Q Consensus       627 ~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g-avLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~~~~~  703 (712)
                      ......  ....|..+.|.        .....+.+++..-- .+||-|||-|.++..+..+ ....+|.+.|+..++..+
T Consensus        75 ~~~~~~~~~~~~~~~~~d~--------~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~-~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A           75 DAMKFLAQVPAEFTVAFDP--------KGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRP-ADKEALEQQILAALGGNE  145 (152)
T ss_dssp             HHHHHHHHSCCCSEEEECT--------TCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCT-TTHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHcCCCCceeECC--------cchhHHHcCCCCCCeEEEECCCCCEEEEEccCCC-cCHHHHHHHHHHHHcccc
Confidence            000000  00122222221        13455667776654 4899999999999875422 334679999999887765


Q ss_pred             CCCc
Q 005134          704 VNVE  707 (712)
Q Consensus       704 ~~~~  707 (712)
                      .+-.
T Consensus       146 ~~~~  149 (152)
T 3gl3_A          146 GHHH  149 (152)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5433

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.54  E-value=0.67  Score=46.73  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-.|.++|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=85.51  E-value=0.75  Score=46.65  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+ |-.|..+|..|.+.|++|++++|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.26  E-value=0.64  Score=44.66  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVG-aGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+||| +|-.|..+|..|.++|++|.+++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999998864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.08  E-value=0.86  Score=46.18  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI---KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi---~v~lvEr~~   76 (712)
                      ..+|.|||+|-.|.++|..|.+.|+   +|.+++|++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3679999999999999999999999   999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.95  E-value=0.74  Score=44.12  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+|.|| |-.|..++..|.++|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=84.95  E-value=0.65  Score=49.11  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~   75 (712)
                      ..+.+|+|+|||-+|..+|..|...|. +++++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            567899999999999999999999999 99999987

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.71  E-value=0.56  Score=51.63  Aligned_cols=34  Identities=32%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~   77 (712)
                      ++|.|||+|-+|+.+|..|+++  |++|+++++++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5799999999999999999998  799999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=84.51  E-value=0.8  Score=46.53  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|.|||+|-.|..+|..|.+.|++|++++|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=84.49  E-value=0.79  Score=43.32  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..|+|.|| |-.|..++..|.++|.+|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            56999999 99999999999999999999999764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=84.49  E-value=0.94  Score=46.20  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            467999999 99999999999999999999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=84.33  E-value=0.95  Score=47.31  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ..+|.|||+ |-+|.++|..|...|+  +++++|...
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            468999998 9999999999999996  899999753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=84.20  E-value=0.58  Score=51.27  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~   77 (712)
                      ++|.|||+|-.|+.+|..|++.  |++|+++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5799999999999999999999  899999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=84.10  E-value=2.9  Score=44.53  Aligned_cols=36  Identities=22%  Similarity=0.143  Sum_probs=26.5

Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL  397 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl  397 (712)
                      .+||.+||+++.-.|.   -...+..++..+|..|...+
T Consensus       300 ~~vfa~GD~~~~~~~~---~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          300 DNVYAVGDANSMTVPK---LGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             TTEEECGGGBTTCCSC---CHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEeehhccCCCCc---HHHHHHHHHHHHHHHHHHHh
Confidence            6899999999863332   23567888888888887766

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.07  E-value=0.75  Score=50.24  Aligned_cols=34  Identities=29%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....|||||||.+|...+..|.+.|.+|+|++..
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3468999999999999999999999999999964

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=84.00  E-value=0.94  Score=45.66  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|+|+|-+|.++|..|++.|.+|+|+.|..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=83.98  E-value=0.89  Score=47.33  Aligned_cols=36  Identities=28%  Similarity=0.485  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      ...+|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            45789999999999999999999999 6788988763

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=83.98  E-value=0.84  Score=49.84  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ....|+|+|+|..|..+|..|+..|.+|+++|++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3457999999999999999999999999999875

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=83.93  E-value=5  Score=36.38  Aligned_cols=133  Identities=11%  Similarity=0.016  Sum_probs=71.2

Q ss_pred             CCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH----HHHHHHhhhhcCCceEEEEEcCCCCcchhh
Q 005134          552 ANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL----ARAALKVAEDFKVPTKVCVLWPAGTTNEVE  627 (712)
Q Consensus       552 ~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~----~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~  627 (712)
                      ..+|..+|.+-|.+.+|+.+++-|+-|.    .+||.+-....+..    .....++.++. -.+.++.|..+..  + .
T Consensus        18 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk----~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~--~-~   89 (167)
T 2jsy_A           18 VKVGDQAPDFTVLTNSLEEKSLADMKGK----VTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLP--F-A   89 (167)
T ss_dssp             CCTTSCCCCCEEEBTTCCEEEHHHHTTS----CEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSG--G-G
T ss_pred             cCCCCcCCceEEECCCCCEeeHHHhCCC----eEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCH--H-H
Confidence            4689999999988767788898898663    56666532110111    22233445554 4567777733211  1 0


Q ss_pred             hhhcccc-C--CCCcccchhhhcccCCccchhhhhcccC-------CceEEEcCCceEEEeeCCCCC-CC-hHHHHHHHH
Q 005134          628 FRSAAEL-A--PWKNYIDVEEVKRSSDSLSWWRICKMTD-------MGAILVRPDDHIAWRSKSGVS-GN-PKLEMEMAF  695 (712)
Q Consensus       628 ~~~~~~~-~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~gavLVRPDg~VaWr~~~~~~-~~-~~~~l~~~~  695 (712)
                      ....... .  .|.-+.|..       .....+.+++..       ...+||-|||.|.++..+... .. ..+++.+.|
T Consensus        90 ~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l  162 (167)
T 2jsy_A           90 QARWCGANGIDKVETLSDHR-------DMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAA  162 (167)
T ss_dssp             TSCCGGGSSCTTEEEEEGGG-------TCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHH
T ss_pred             HHHHHHhcCCCCceEeeCCc-------hhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHH
Confidence            0000000 0  122222200       135556677765       457999999999999753211 11 124566666


Q ss_pred             HHhh
Q 005134          696 SAVL  699 (712)
Q Consensus       696 ~~~~  699 (712)
                      ++++
T Consensus       163 ~~ll  166 (167)
T 2jsy_A          163 KALV  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=83.89  E-value=0.98  Score=46.98  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|.|| |-.|..++..|.++|.+|.++.|.+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            468999999 9999999999999999999999986

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=83.82  E-value=0.78  Score=48.43  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~   75 (712)
                      ..+.+|+|+|||-+|..+|..|...|. +++++||.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            567899999999999999999999999 79999987

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.80  E-value=0.86  Score=43.85  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+|.|| |-.|..++..|.++|.+|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999999 9999999999999999999999874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=83.79  E-value=0.85  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      .+.+|.|||||-+|.++|+.|...++  ++.|+|..
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            34799999999999999999999987  78889864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=83.75  E-value=0.63  Score=48.43  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCC
Q 005134           42 AVVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi-------~v~lvEr~   75 (712)
                      ..++|+|+|| |-+|.+++..|...|+       ++.++|+.
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            3468999998 9999999999999986       78888875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=83.52  E-value=0.86  Score=46.06  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|..|...|..|.+ |++|++++|++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            369999999999999999999 99999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=83.51  E-value=0.81  Score=48.47  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-------i~v~lvEr~~~   77 (712)
                      .+|.|||+|-.|.++|..|++.|       .+|++++|.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.49  E-value=0.81  Score=45.59  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~   76 (712)
                      +|.|||+|-.|..+|..|.+.| .+|.+++|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=83.48  E-value=0.84  Score=46.74  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...|+|+|+|.+|.++|..|.+.|+ +++|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998874

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=83.43  E-value=0.78  Score=47.22  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~   76 (712)
                      ++|.|||+|-.|.++|..|++.|  .+++++++..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            36999999999999999999999  6899999863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=83.43  E-value=1  Score=45.38  Aligned_cols=35  Identities=34%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|+|-+|.++|..|.+.|.+++|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=83.38  E-value=0.7  Score=47.78  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .-+|+|||+|++|+-+|..|++.| +|+++++..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            368999999999999999999999 799999884

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=83.38  E-value=1.1  Score=49.35  Aligned_cols=33  Identities=12%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|-.|..+|..|+++|++|.+++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999865

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.35  E-value=0.99  Score=47.79  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      .-.|+|+|+|++|++++..++..|. +|+++++.+.
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK  229 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            3579999999999999999999999 7999987653

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=83.34  E-value=0.92  Score=47.67  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .|+|+|||..|..++..+++.|++++++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            5999999999999999999999999999987754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=83.32  E-value=0.98  Score=45.83  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|||.|| |-.|..++..|.++|++|+++-|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46999999 99999999999999999999988764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=83.23  E-value=7.5  Score=34.33  Aligned_cols=140  Identities=9%  Similarity=0.027  Sum_probs=71.6

Q ss_pred             CCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHHH----HHHhhhhcC-CceEEEEEcCCCCcchhhh
Q 005134          554 PGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLARA----ALKVAEDFK-VPTKVCVLWPAGTTNEVEF  628 (712)
Q Consensus       554 pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~a----a~~~~~~~g-~~~~~~~~~~~~~~~~~~~  628 (712)
                      +|..+|.+-|.+.+|..+++-|+-|.    .+||.+-. ..+..+..    ..++.+..+ -.+.++.|..+........
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~~~~gk----~vlv~F~~-~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~   76 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELSDLKGK----GVFLNFWG-TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN   76 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGGGGTTS----EEEEEEEC-TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHHHcCCC----EEEEEEEC-CCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence            68889999887666777888888542    56665532 11222221    223333332 2356666632211000000


Q ss_pred             hhccccCCCCcccchhhhcccCCccchhhhhcccCCce-EEEcCCceEEEeeCCCCCCChHHHHHHHHHHhhCCCCCCCc
Q 005134          629 RSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTDMGA-ILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAVLGIKPVNVE  707 (712)
Q Consensus       629 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ga-vLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  707 (712)
                      -.....-.|..+.|.        .....+.+++..--. +||-|||.|.++..+.   ....+|.+.|+.++.....+.+
T Consensus        77 ~~~~~~~~~~~~~d~--------~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~---~~~~~l~~~l~~ll~~~~~~~~  145 (151)
T 2f9s_A           77 FMKSYGVNFPVVLDT--------DRQVLDAYDVSPLPTTFLINPEGKVVKVVTGT---MTESMIHDYMNLIKPGETSGLE  145 (151)
T ss_dssp             HHHHHTCCSCEEEET--------TSHHHHHTTCCSSCEEEEECTTSEEEEEEESC---CCHHHHHHHHHHHSCC------
T ss_pred             HHHHcCCCceEEECC--------chHHHHhcCCCCCCeEEEECCCCcEEEEEeCC---CCHHHHHHHHHHHHhhhhcccc
Confidence            000001123223331        135556677766644 7888999999997643   2356799999999877666655


Q ss_pred             cc
Q 005134          708 GT  709 (712)
Q Consensus       708 ~~  709 (712)
                      +.
T Consensus       146 ~~  147 (151)
T 2f9s_A          146 HH  147 (151)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.22  E-value=0.78  Score=50.41  Aligned_cols=34  Identities=32%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|||+|.+|..+|..|+..|.+|+++|+.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=83.18  E-value=0.96  Score=45.63  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +|.|||+|..|.++|..|++.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899998764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=83.18  E-value=1.1  Score=46.76  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      ...|+|.|| |..|..++..|.++| .+|+++.|...
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            367999999 999999999999999 99999988754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=83.13  E-value=1.3  Score=46.29  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..|.|||+|-.|.++|..|++.|++|+++++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            579999999999999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=83.06  E-value=1  Score=46.77  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ...+|.|||+|-+|.++|+.|+..|+  +++|+|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34789999999999999999999998  89999975

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=83.06  E-value=1.1  Score=49.29  Aligned_cols=36  Identities=11%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +..+|.|||.|..|..+|..|+++|++|++++|.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            347899999999999999999999999999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=83.05  E-value=0.86  Score=45.42  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            45789999999999999999999999 678888765

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.04  E-value=1.2  Score=44.04  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC----CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI----KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi----~v~lvEr~~   76 (712)
                      .+|.|||+|-.|.++|..|.+.|+    +|.+++|++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            579999999999999999999998    999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=82.90  E-value=0.62  Score=49.91  Aligned_cols=31  Identities=32%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar-~Gi~v~lvEr   74 (712)
                      ++|.|||+|-.|.++|..|++ .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            479999999999999999998 4999999984

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=82.87  E-value=11  Score=34.39  Aligned_cols=130  Identities=10%  Similarity=-0.024  Sum_probs=70.6

Q ss_pred             CCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH----HHHHHHhhhhcCCceEEEEEcCCCCcchhhh
Q 005134          553 NPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL----ARAALKVAEDFKVPTKVCVLWPAGTTNEVEF  628 (712)
Q Consensus       553 ~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~----~~aa~~~~~~~g~~~~~~~~~~~~~~~~~~~  628 (712)
                      .+|..+|.+-|.+.+|+.+|+-|+-|.    .+||.+-.+..+.-    .....++.+++ -.+.++.|..+..  +...
T Consensus        22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk----~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~--~~~~   94 (171)
T 2yzh_A           22 KVGDRAPEAVVVTKDLQEKIVGGAKDV----VQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLP--FAQK   94 (171)
T ss_dssp             CTTSBCCCEEEEETTSCEEEESSCCSS----EEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCH--HHHH
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCC----eEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCH--HHHH
Confidence            588899999888767788899898653    67776531111111    11223344444 4577777743311  1111


Q ss_pred             hhccccC--CCCcccchhhhcccCCccchhhhhcccC----------CceEEEcCCceEEEeeCCC---CCCChHHHHHH
Q 005134          629 RSAAELA--PWKNYIDVEEVKRSSDSLSWWRICKMTD----------MGAILVRPDDHIAWRSKSG---VSGNPKLEMEM  693 (712)
Q Consensus       629 ~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------~gavLVRPDg~VaWr~~~~---~~~~~~~~l~~  693 (712)
                      .-.....  .|.-+.|..       .... +.+|+..          ...+||-|||.|.++....   ...+ .+++.+
T Consensus        95 ~~~~~~~~~~~~~l~D~~-------~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~-~~~ll~  165 (171)
T 2yzh_A           95 RFCESFNIQNVTVASDFR-------YRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPN-YDEVVN  165 (171)
T ss_dssp             HHHHHTTCCSSEEEECTT-------TCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC-CHHHHH
T ss_pred             HHHHHcCCCCeEEeecCc-------cCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCC-HHHHHH
Confidence            1111111  233334410       1355 6777652          4679999999999987421   1122 345666


Q ss_pred             HHHHh
Q 005134          694 AFSAV  698 (712)
Q Consensus       694 ~~~~~  698 (712)
                      .|+++
T Consensus       166 ~l~~l  170 (171)
T 2yzh_A          166 KVKEL  170 (171)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            66654

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=82.86  E-value=1.1  Score=46.10  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      +|.|||||-+|.++|+.|+..|+ ++.|+|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999998 699999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=82.85  E-value=0.82  Score=46.59  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++|.|||+|-.|...|..|.+.|++|++++|++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3679999999999999999999999999998764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=82.82  E-value=0.86  Score=48.88  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|+|||.|++|..+|..|...|.+|+++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999999763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=82.80  E-value=1  Score=46.99  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+|+|++|++++..++..|.+|+++++.+.
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  211 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH  211 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999987654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=82.66  E-value=1.2  Score=47.38  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ....++|+|||.+|..+|..++..|++|+|+|.++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            3468999999999999999999999999999988764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=82.63  E-value=1.2  Score=48.82  Aligned_cols=34  Identities=15%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.+|.|||+|-.|..+|..|+++|++|.+++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3689999999999999999999999999998764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=82.60  E-value=7.4  Score=37.32  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             CCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHH----HHHHHHhhhhcC-CceEEEEEcCCCC----
Q 005134          552 ANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHL----ARAALKVAEDFK-VPTKVCVLWPAGT----  622 (712)
Q Consensus       552 ~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~----~~aa~~~~~~~g-~~~~~~~~~~~~~----  622 (712)
                      -.+|..+|.+-|.+.+|+.+++-|+-|.   ..+||.+-.. .+..    .....++.++.. -.+.++.|..+..    
T Consensus        32 l~~G~~aP~f~l~~~~G~~v~l~~~~gk---~~vll~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~  107 (218)
T 3u5r_E           32 ITLGTRAADFVLPDAGGNLFTLAEFKDS---PALLVAFISN-RCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFP  107 (218)
T ss_dssp             CCTTCBCCCCCEECTTCCEECGGGGTTC---SEEEEEECCS-SCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCG
T ss_pred             CCCCCcCCCcEeECCCCCEEeHHHhCCC---CeEEEEEECC-CCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence            4689999999998767888899898774   1366665431 1111    122334444432 2377777733210    


Q ss_pred             -cchhhhhhc-cc-cCCCCcccchhhhcccCCccchhhhhcccCC-ceEEEcCCceEEEeeCCCC------CCChHHHHH
Q 005134          623 -TNEVEFRSA-AE-LAPWKNYIDVEEVKRSSDSLSWWRICKMTDM-GAILVRPDDHIAWRSKSGV------SGNPKLEME  692 (712)
Q Consensus       623 -~~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-gavLVRPDg~VaWr~~~~~------~~~~~~~l~  692 (712)
                       +........ .. .-.|..+.|.        .....+.+++..- ..+||-+||.|.||+.-..      ..-...+|+
T Consensus       108 ~d~~~~~~~~~~~~~~~~~~l~D~--------~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~  179 (218)
T 3u5r_E          108 EETLERVGAEVKAYGYGFPYLKDA--------SQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLR  179 (218)
T ss_dssp             GGSHHHHHHHHHHHTCCSCEEECT--------TCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHH
T ss_pred             cCCHHHHHHHHHHhCCCccEEECC--------ccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHH
Confidence             000000000 00 0122222231        1355566776654 5688899999999974210      011246799


Q ss_pred             HHHHHhhCCCCCCC
Q 005134          693 MAFSAVLGIKPVNV  706 (712)
Q Consensus       693 ~~~~~~~~~~~~~~  706 (712)
                      ++|+.+|.-.+...
T Consensus       180 ~~i~~ll~~~~~~~  193 (218)
T 3u5r_E          180 AAVDAVLKGKDVGT  193 (218)
T ss_dssp             HHHHHHHTTCCCCS
T ss_pred             HHHHHHHcCCCCCc
Confidence            99999986655443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=82.29  E-value=1.1  Score=45.40  Aligned_cols=71  Identities=20%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             ecccceeeeccCcCcCcccccc---cccCCCCccCC------------------------CCcccCEEEECCCHHHHHHH
Q 005134            7 TRGLNCFSRIKTFPYPYGYTQC---RALSDSKTIVS------------------------NEAVVPVLIVGAGPVGLVLS   59 (712)
Q Consensus         7 ~~~~~~~~~~~~~~~p~~~~~~---~~~s~~~~~~~------------------------~~~~~~VlIVGaGpaGL~~A   59 (712)
                      .+|+|.+---|..++|+++.-.   ..++..+++..                        +.....|+|+|+|-+|.++|
T Consensus        54 ~~G~nVTiP~K~~v~~~~d~l~~~A~~iGAVNTv~~~~g~l~G~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia  133 (277)
T 3don_A           54 IDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIA  133 (277)
T ss_dssp             CSEEEECTTCTTTTGGGCSEECHHHHHHTCCCEEEEETTEEEEECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHH
T ss_pred             CCEEEECcCCHHHHHHHhhhCCHHHHHhCceeEEEecCCEEEEECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHH
Confidence            4678887777888888876311   22333332210                        12345799999999999999


Q ss_pred             HHHHhCCC-CEEEEcCCCC
Q 005134           60 ILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        60 ~~Lar~Gi-~v~lvEr~~~   77 (712)
                      ..|.+.|+ +++|+.|...
T Consensus       134 ~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          134 NELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             HHHHTTCCSCCEEECSCGG
T ss_pred             HHHHHCCCCEEEEEeCCHH
Confidence            99999999 8999998864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=82.22  E-value=1.4  Score=45.96  Aligned_cols=39  Identities=28%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             CCCcccCEEEECC-CHHHHHHHHHHHh--CCCCEEEEcCCCC
Q 005134           39 SNEAVVPVLIVGA-GPVGLVLSILLTK--LGIKCSVLEKNKA   77 (712)
Q Consensus        39 ~~~~~~~VlIVGa-GpaGL~~A~~Lar--~Gi~v~lvEr~~~   77 (712)
                      |.+....|+|.|| |-.|..++..|.+  .|++|+++.|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            3344568999976 9999999999999  9999999998654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=82.10  E-value=1.1  Score=46.17  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+.|||.|| |-.|..++..|.++|.+|+++.|...
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT   55 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            357999998 99999999999999999999998643

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=82.06  E-value=1.1  Score=46.60  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      .+.+|.|||||-+|.++|+.|...++  ++.|+|..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            34789999999999999999999887  78888864

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=82.00  E-value=4.5  Score=37.00  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             CCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEc
Q 005134          553 NPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIA  589 (712)
Q Consensus       553 ~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~  589 (712)
                      ..|..+|-+-|.+.+|+.+|+-|+.+.|+  .++|.+
T Consensus         6 ~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk--~vvl~f   40 (164)
T 4gqc_A            6 ELGEKAPDFTLPNQDFEPVNLYEVLKRGR--PAVLIF   40 (164)
T ss_dssp             CTTSBCCCCEEEBTTSCEEEHHHHHHTSS--CEEEEE
T ss_pred             cCCCCCcCcEeECCCCCEEEHHHHhcCCC--EEEEEE
Confidence            47899999999876778889999876554  455554

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=81.92  E-value=1.1  Score=45.42  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..-|||.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            345888886 6789999999999999999998753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=81.86  E-value=10  Score=41.66  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .+|+|||+|-+|.-.+..|+++  +.+|+++=|.+..
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            3699999999999999999876  7799999998754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=81.84  E-value=1  Score=46.02  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||+|-+|.++|+.|..+++  ++.|||...
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            479999999999999999999886  688998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=81.76  E-value=1.2  Score=45.42  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....|+|||+|..|..+|..|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34679999999999999999999999999999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=81.68  E-value=1.3  Score=48.60  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|-.|..+|..|+++|++|.+++|.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=81.64  E-value=1.4  Score=45.72  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=31.7

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .....|||.|| |-.|..++..|.++|++|+++.|.+..
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            34568999999 999999999999999999999998653

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=81.62  E-value=1.5  Score=47.32  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ....|+|+|+|..|..++..+++.|++|++++..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            446899999999999999999999999999986543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=81.52  E-value=1.2  Score=44.28  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             ccCEEEECC-C-HHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGA-G-PVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGa-G-paGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...|||.|| | -.|..+|..|+++|.+|+++.|+.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            456999999 7 599999999999999999998864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=81.37  E-value=1.4  Score=46.71  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ...|+|+|+|..|..++..+.+.|++|++++..+.
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35799999999999999999999999999997654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=81.27  E-value=1  Score=47.32  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            35789999999999999999999999 788898765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=81.24  E-value=1.2  Score=44.95  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|||+|-+|.++|..|.+.|+++++++|..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4679999999999999999999999999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=81.23  E-value=1.1  Score=47.19  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+|+|++|+.++..++..|.+|+.+++.+.
T Consensus       181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~  214 (360)
T 1piw_A          181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR  214 (360)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999987654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=81.12  E-value=1.3  Score=45.31  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ....|+|||+|..|..+|..|...|.+|++++|..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44679999999999999999999999999999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=80.92  E-value=1  Score=48.69  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+.-|||.|-+|+.+|..|+++|++|+++++++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5678999999999999999999999999998853

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=80.72  E-value=1.6  Score=43.57  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             ecccceeeeccCcCcCcccccc--cccCCCCccC----C--------------CCcccCEEEECCCHHHHHHHHHHHhCC
Q 005134            7 TRGLNCFSRIKTFPYPYGYTQC--RALSDSKTIV----S--------------NEAVVPVLIVGAGPVGLVLSILLTKLG   66 (712)
Q Consensus         7 ~~~~~~~~~~~~~~~p~~~~~~--~~~s~~~~~~----~--------------~~~~~~VlIVGaGpaGL~~A~~Lar~G   66 (712)
                      .+|+|.+---|..++|+++.++  ..++..+++.    .              .... .|+|+|+|-+|.+++..|.+.|
T Consensus        53 ~~G~nVT~P~K~~v~~~~d~~~~A~~iGAvNTi~~~~G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G  131 (253)
T 3u62_A           53 YDGFNATIPHKERVMRYVEPSEDAQRIKAVNCVFRGKGYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMG  131 (253)
T ss_dssp             CSEEEECTTCTTGGGGGSEECHHHHHHTCCCEEETTEEECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCceeecCChHHHHHHHhCCCHHHHHcCcceEeecCEEEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcC
Confidence            3566666666666677666511  1233333221    0              1234 8999999999999999999999


Q ss_pred             C-CEEEEcCCCC
Q 005134           67 I-KCSVLEKNKA   77 (712)
Q Consensus        67 i-~v~lvEr~~~   77 (712)
                      + +++|+.|...
T Consensus       132 ~~~I~v~nR~~~  143 (253)
T 3u62_A          132 VKDIWVVNRTIE  143 (253)
T ss_dssp             CCCEEEEESCHH
T ss_pred             CCEEEEEeCCHH
Confidence            9 9999998753

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=80.70  E-value=18  Score=32.12  Aligned_cols=143  Identities=10%  Similarity=0.064  Sum_probs=70.5

Q ss_pred             CCCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHH----HHHHhhhhcC-CceEEEEEcCCCCcch
Q 005134          551 SANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLAR----AALKVAEDFK-VPTKVCVLWPAGTTNE  625 (712)
Q Consensus       551 ~~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~----aa~~~~~~~g-~~~~~~~~~~~~~~~~  625 (712)
                      ...+|..+|.+-+.+.+|+.+++-++-|.    .+||.+-. ..+..+.    ...++.++.+ -.+.++.|..+.+...
T Consensus         7 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk----~vlv~f~~-~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~   81 (165)
T 3or5_A            7 ADARPTPAPSFSGVTVDGKPFSSASLKGK----AYIVNFFA-TWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPN   81 (165)
T ss_dssp             CCCCCCBCCCCEEECTTSCEEEGGGGTTC----EEEEEEEC-TTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHH
T ss_pred             hhcCCCCCCCceeeCCCCCEechhHcCCC----EEEEEEEc-CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH
Confidence            35689999999888767777888887542    56665542 1122221    2223333433 2367777732211100


Q ss_pred             hhhhhccccCCCCcccchhhhcccCCccchhhhh------cccCC-ceEEEcCCceEEEeeCCCCCCChHHHHHHHHHHh
Q 005134          626 VEFRSAAELAPWKNYIDVEEVKRSSDSLSWWRIC------KMTDM-GAILVRPDDHIAWRSKSGVSGNPKLEMEMAFSAV  698 (712)
Q Consensus       626 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~-gavLVRPDg~VaWr~~~~~~~~~~~~l~~~~~~~  698 (712)
                      ...--....-.|..+.|.         ....+.+      ++..- ..+||-|||.|.++..+.   ....+|.+.|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~---~~~~~l~~~l~~~  149 (165)
T 3or5_A           82 VKNYMKTQGIIYPVMMAT---------PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP---RSKADFDRIVKMA  149 (165)
T ss_dssp             HHHHHHHHTCCSCEEECC---------HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCceEecC---------HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC---CCHHHHHHHHHHH
Confidence            000000001122222221         1222223      34333 458889999999997643   2457799999999


Q ss_pred             hCCCCCCCcccC
Q 005134          699 LGIKPVNVEGTT  710 (712)
Q Consensus       699 ~~~~~~~~~~~~  710 (712)
                      |........+++
T Consensus       150 l~~~~~~~~~~~  161 (165)
T 3or5_A          150 LGAKAATKEGHH  161 (165)
T ss_dssp             HC----------
T ss_pred             Hhhhcccccccc
Confidence            987655555443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=80.60  E-value=0.99  Score=46.61  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCC--CCEEEEcCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLG--IKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~G--i~v~lvEr~~   76 (712)
                      ++|+|||| |-+|.++|..|+..|  .++.++|...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            36999998 999999999999998  5899999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=80.53  E-value=1.3  Score=51.23  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4699999999999999999999999999998763

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=80.42  E-value=9.2  Score=34.55  Aligned_cols=112  Identities=11%  Similarity=-0.068  Sum_probs=64.8

Q ss_pred             CCCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEcCCccchHHHH-------HHHHhhhhcCCceEEEEEcCCCCcc
Q 005134          552 ANPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIAPVEESYHLAR-------AALKVAEDFKVPTKVCVLWPAGTTN  624 (712)
Q Consensus       552 ~~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~~~~~~~~~~~-------aa~~~~~~~g~~~~~~~~~~~~~~~  624 (712)
                      ..+|..+|.+-|.+.+|+.+++-|+-|.    .+||.+-.+   .|+.       ...++.++. -.+.++.|..+..  
T Consensus        16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk----~vvl~F~~~---~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~--   85 (163)
T 1psq_A           16 LQVGDKALDFSLTTTDLSKKSLADFDGK----KKVLSVVPS---IDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLP--   85 (163)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTS----EEEEEECSC---TTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCH--
T ss_pred             CCCCCCCCCEEEEcCCCcEeeHHHhCCC----EEEEEEECC---CCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCH--
Confidence            4689999999998767788899898653    677766321   1421       223344444 4567777743311  


Q ss_pred             hhhh--hhccccCCCCcccchhhhcccCCccchhhhhcccC-------CceEEEcCCceEEEeeC
Q 005134          625 EVEF--RSAAELAPWKNYIDVEEVKRSSDSLSWWRICKMTD-------MGAILVRPDDHIAWRSK  680 (712)
Q Consensus       625 ~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~gavLVRPDg~VaWr~~  680 (712)
                      +...  ........|.-+.|..       .+...+.+|+..       ...+||-|||.|.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~l~D~~-------~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~  143 (163)
T 1psq_A           86 FAQKRWCGAEGLDNAIMLSDYF-------DHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY  143 (163)
T ss_dssp             HHHHHHHHHHTCTTSEEEECTT-------TCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHhcCCCCcEEecCCc-------hhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEe
Confidence            1111  1111111333233310       145667777763       47799999999999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=80.25  E-value=1.1  Score=48.00  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ...|+|||+|..|..+|..|...|. +|++++|..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4579999999999999999999999 899998763

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=80.16  E-value=1.6  Score=45.44  Aligned_cols=33  Identities=36%  Similarity=0.484  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+|++|++++..++..|. +|+++++.+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999999 999988653

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=80.04  E-value=1.7  Score=43.33  Aligned_cols=32  Identities=28%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|+|||+|-+|.+.|..|.+.|+++++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	712
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	3e-25
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-12
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-09
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	9e-11
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-10
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-07
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	7e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	3e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	5e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	6e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	8e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	8e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.002
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.002
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.002
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.003
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score =  105 bits (262), Expect = 3e-25
 Identities = 79/408 (19%), Positives = 124/408 (30%), Gaps = 84/408 (20%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILL-----TKLGIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L      K  +K  +++K      + QA  +  R   
Sbjct: 3   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 63  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 116

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
           Q ++ + +L  + +++      E                                     
Sbjct: 117 QGRIERRILDSIAEISDTRIKVERP----------------------------------- 141

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
                     ++ +     D     V   +      E                     ++
Sbjct: 142 -----LIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDES--------------TPLQFGHK 182

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
               LF             + L EG+                      E +  K V    
Sbjct: 183 TENGLFRSNLQTQEEEDANYRLPEGKE-----------------AGEIETVHCKYVIGCD 225

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
                +          V EKF     ++ +AGDACH   P  G GMNT + D +NL WK+
Sbjct: 226 GGHSWVRRTLGFEM-IVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKL 283

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
             VL   A   IL TYE ER+P A+       Q  R     P+    D
Sbjct: 284 GLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVAD 331

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLA 102
            V I+GAGP GL+L  LL K GI   +LE+          +A  +      + R+  G+ 
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVD 62

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
             + R     +                      +  D +++    +V  + Q ++ + L+
Sbjct: 63  RRMARDGLVHEGVEIAFAG------------QRRRIDLKRLSGGKTVTVYGQTEVTRDLM 110

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +  E                     G   +     V +    Q      +F ++G+    
Sbjct: 111 EAREA-------------------CGATTVYQAAEVRLH-DLQGERPYVTFERDGE--RL 148

Query: 223 NIQCNILIGTDGAGSTVRKLV 243
            + C+ + G DG     R+ +
Sbjct: 149 RLDCDYIAGCDGFHGISRQSI 169

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.1 bits (134), Expect = 4e-09
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
             + ++ LAGDA H  PP G  G+N    D   L   +    ++     +L  Y      
Sbjct: 174 MQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE-GRGELLERYSAICLR 232

Query: 416 IAEFNTALSVQNFRAAM 432
                     + F   M
Sbjct: 233 RIW-----KAERFSWWM 244

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.9 bits (146), Expect = 9e-11
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
           V                     +I L GDA H   P G  G +  + D   LA  +A   
Sbjct: 168 VRAHLHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA--- 224

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
           ++   A+ L  YE  R+P A      + +  +      S
Sbjct: 225 RNADVAAALREYEEARRPTANKIILANREREKEEWAAAS 263

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.6 bits (140), Expect = 6e-10
 Identities = 29/197 (14%), Positives = 54/197 (27%), Gaps = 31/197 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           +LI GAG  GL  ++ L + GI K ++LE +           I         +L      
Sbjct: 4   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
              +          +     +G  + S               +         L       
Sbjct: 64  AATAI-----PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAA----- 113

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
                                L  + +  G     +   D  + +     ++G    + +
Sbjct: 114 -----------------VRERLGQQAVRTGLGVERIEERDGRVLIG---ARDGHGKPQAL 153

Query: 225 QCNILIGTDGAGSTVRK 241
             ++L+G DG  S VR 
Sbjct: 154 GADVLVGADGIHSAVRA 170

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFINNRYALVFRKLDGLAEE 104
           + +VG    GL  +++L   G+   V E++    S       +         +     + 
Sbjct: 7   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 105 IERSQPPVDLWRKF 118
           I      ++     
Sbjct: 67  ISVPSSSMEYVDAL 80

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK------AFSTHPQAHFINNRYALVFRKLD 99
           V+++G GP GL+ +I   + G    +L+K        A S   + +  N        K  
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                   S   +      I      G  L   DH +          V  A  ++ K
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN------------KAFSTHPQAHFINNRYAL 93
           V ++GAG  GL  +  L   G+  +V E                      A+ +      
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGD 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQ 136
           V   +D L    ++  P     R      +        +D ++
Sbjct: 64  VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIK 106

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 34

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +I+GAG  GL  +  L KLG   +V +  K
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +IVG+G  G V +  L KL  K  V+EK  
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS +++  G K   +++N
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRN 38

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 14/196 (7%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN-----KAFSTHPQ--------AHFINNRYA 92
           V++VG G  G+  + LL   G+   VLE       + ++   Q          ++     
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 93  LVFRKLDGLAEEIERSQPPVDL-WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH 151
            + R    L  E  +      L            GP     + +   D       +    
Sbjct: 62  RILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMG 121

Query: 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
                         E+ +         +       +    L  + CV+    +       
Sbjct: 122 REIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFL 181

Query: 212 SFLKEGKCTERNIQCN 227
            ++K+   T R I   
Sbjct: 182 WYVKQCGGTTRIISTT 197

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 47/365 (12%), Positives = 98/365 (26%), Gaps = 35/365 (9%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQ--------AHFINNRYAL 93
           V +VG G  GL ++  L   G    +LE +        TH           +   +R   
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPA 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
                  L  E           R+++Y       +  S       D   + + + VA   
Sbjct: 63  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGEL 122

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
             +     + +      +         +    +Q        E +SV+AT   +  +   
Sbjct: 123 FSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPML--VKME 180

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
            +        I+           +     +   L       +++     +       +  
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGA 240

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEF---ILQVPFYPPQQNLEDFSPEICEKLIFKLVG 330
           R   L        + +       E      +L  P +   + L      +          
Sbjct: 241 RVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAA-------- 292

Query: 331 WELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLA 390
             ++ I  +     V      +  L     + L G+A        G G+N  +++A  LA
Sbjct: 293 -LVAGIYNLGHLERV---AAIDAALQRLPGLHLIGNAYK------GVGLNDCIRNAAQLA 342

Query: 391 WKIAS 395
             + +
Sbjct: 343 DALVA 347

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS LL+  G K   ++K 
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQ 37

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V VL+VGAG  GL     L +LG    V+E     
Sbjct: 8  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+IVGAG  GL  + +L   G + +VLE +
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 37/351 (10%), Positives = 82/351 (23%), Gaps = 20/351 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF----STHPQAHFINNRYALVFRKLDG 100
           V++VGAG  G+  +  L++ GI    +LE              A       A     ++G
Sbjct: 3   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 62

Query: 101 LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                        L  +               +     D + V   + +A   +    KL
Sbjct: 63  GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 122

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                      +          +        +           +       + L+     
Sbjct: 123 SATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL 182

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
                    +           +V                    +   + ++ E       
Sbjct: 183 ATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG 242

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID 340
           +        + + D      ++       Q +L  F P+        L  W++  I    
Sbjct: 243 VTVKTEDNSVYSAD----YVMVSASLGVLQSDLIQFKPK--------LPTWKVRAIY--Q 288

Query: 341 IKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG-MNTGVQDAHNLA 390
             P  ++    ++      ++   G+           G   +G+  A  L 
Sbjct: 289 FWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           V+IVGAGP GL  +  L +L       ++  ++EK      H  +    +  A      D
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
              +    + P  +     +         +     M       V     V+   +     
Sbjct: 95  WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+I+G+G  GL  +  L   G+  ++LE  
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLEAR 37

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V++VG+G  G   +I  T  G K  ++EK      +
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH 85
          V++VGAG +G+     L K G+K  +++      T+   H
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHH 45

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN 88
          VLIVG+GP G   +I   + GI+  ++ +             N
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIEN 46

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +++G G +G  ++  L K     ++ E  
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V+I+G+G  GL  ++     G K  +LEK      +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+++G GP G   +      G+K +++E+ K  
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 42  AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGL 101
             VP +++G G    V ++ L + G++  +LE  + ++       I        ++    
Sbjct: 1   GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 60

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
                R++ P+  +           P  G +D +     
Sbjct: 61  ---KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQM 96

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+I+G GP G V +I   +LG K + +EK  A 
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          VL+VGAG  G   S+   K G    +++K      +
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 6/31 (19%), Positives = 18/31 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
          ++++G G  G+  +    +   K +++EK++
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVEKSR 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	712
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.96
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.7
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.37
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.22
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.21
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.09
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.06
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.04
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.03
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.9
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.89
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.82
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.78
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.78
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.77
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.76
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.74
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.71
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.71
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.7
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.63
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.6
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.58
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.58
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.56
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.54
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.54
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.51
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.41
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.37
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.35
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.34
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.33
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.32
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.31
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.31
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.27
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.26
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.22
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.22
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.22
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.18
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.15
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.15
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.14
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.1
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.08
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.08
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.07
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.06
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.04
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.03
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.95
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.93
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.9
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.89
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.82
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.8
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.77
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.77
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.72
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.64
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.61
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.61
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.57
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.54
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.49
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	97.49
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.46
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.34
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.31
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.17
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.09
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.97
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.87
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.84
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.65
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.45
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.22
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.13
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.95
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	95.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.86
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.62
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.53
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.99
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.81
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.47
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.29
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.06
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.74
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.69
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.5
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.5
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.43
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.35
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.99
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.62
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.57
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.33
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.3
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.14
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.08
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.0
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.99
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.44
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.33
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.03
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.83
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.7
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.38
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.28
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.27
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.94
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	89.89
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.86
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.61
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.59
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.67
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.36
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.14
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.03
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.95
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	87.85
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	87.42
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.18
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.09
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.35
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.81
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.74
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	85.18
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.09
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.06
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.92
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.63
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.6
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.91
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.23
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.63
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.03
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.56
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	81.18
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	81.18
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.54

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=6.8e-34  Score=303.37  Aligned_cols=308  Identities=24%  Similarity=0.289  Sum_probs=186.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH-----hCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCcccc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLT-----KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLW  115 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~La-----r~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~  115 (712)
                      ...|||+||||||+||++|+.|+     ++|++|+||||++.+...++++.|+++++++|+++ |+++++.+.+.+....
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~i~~~~~~~~~~   83 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTI   83 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHc-CChHHHHhhcCCccee
Confidence            35699999999999999999996     57999999999999999999999999999999999 9999999988765432


Q ss_pred             ceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc
Q 005134          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (712)
Q Consensus       116 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~  195 (712)
                      .  .+.....+.........   .............+.|..++..|.+.+.+...                  ..+...+
T Consensus        84 ~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~  140 (360)
T d1pn0a1          84 A--LYNPDENGHIRRTDRIP---DTLPGISRYHQVVLHQGRIERRILDSIAEISD------------------TRIKVER  140 (360)
T ss_dssp             E--EEEECTTSCEEEEEEEE---SSCTTSCSSCCEECCHHHHHHHHHHHHHHHHT------------------TSSCEEC
T ss_pred             E--EEecccCCccccccccc---ccccccccchheeecHHHHHHHHHHHHHhccc------------------cceeeeE
Confidence            2  11122222222111110   00011122234567899999999988766432                  0111110


Q ss_pred             EEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCC
Q 005134          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (712)
Q Consensus       196 ~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (712)
                      .+                      ...++.+|++++|||.+|.||.............            ..... ....
T Consensus       141 ~~----------------------~~~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~------------~~~~~-~~~~  185 (360)
T d1pn0a1         141 PL----------------------IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP------------LQFGH-KTEN  185 (360)
T ss_dssp             SE----------------------EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCC------------CTTCC-CCCS
T ss_pred             ec----------------------ccceEEeeEEEEeecCCcceEEEEEEeecccccc------------eeeee-ecCC
Confidence            00                      1135789999999999999997653221111000            00000 0000


Q ss_pred             ceEEE--EeecCC-eEEEEEecCCCCeEE-EEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhh
Q 005134          276 GMLFF--IFNTEA-IGVLVAHDLKEGEFI-LQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA  351 (712)
Q Consensus       276 ~~~~~--~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va  351 (712)
                      +..+.  ...+.. ..+..+.......+. ....+..   ........                    ....+.....++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------------~~~~~~~~~~~~  242 (360)
T d1pn0a1         186 GLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVI---GCDGGHSW--------------------VRRTLGFEMIVT  242 (360)
T ss_dssp             SSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEE---ECCCTTCH--------------------HHHHHTCCCEEC
T ss_pred             CceEEeeecCCcccceeecCcccchhhHHHHHHHhhc---Ccccccch--------------------hhcccccccchh
Confidence            00000  000000 000000000000000 0000000   00000000                    000111222344


Q ss_pred             ccccccCCcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 005134          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (712)
Q Consensus       352 ~~~~~~~gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~~~  431 (712)
                      ++|.. .|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++.+.+++|++|+.+|++++..++..+....+.+
T Consensus       243 ~~~~~-~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  321 (360)
T d1pn0a1         243 EKFSK-DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLF  321 (360)
T ss_dssp             SCSEE-TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheee-cCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55542 48999999999999999999999999999999999999999988999999999999999999888876555444

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=3.1e-30  Score=265.49  Aligned_cols=254  Identities=22%  Similarity=0.272  Sum_probs=187.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      +||+||||||+||++|+.|+++|+ +|+|+||++.+...++++.|+++++++|+++ |+.+.+.+.+....    .....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~-~~~~~~~~~~~~~~----~~~~~   76 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTH----ELRYI   76 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEEC----EEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHc-CchhhhHhhhcccc----cceeE
Confidence            799999999999999999999997 8999999999999999999999999999999 99999988765432    12233


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                      ...|..+..........     .........+......+.+...+..                 .++.+.++++++.+++
T Consensus        77 ~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~~  134 (288)
T d3c96a1          77 DQSGATVWSEPRGVEAG-----NAYPQYSIHRGELQMILLAAVRERL-----------------GQQAVRTGLGVERIEE  134 (288)
T ss_dssp             CTTSCEEEEEECGGGGT-----CSSCEEEEEHHHHHHHHHHHHHHHH-----------------CTTSEEESEEEEEEEE
T ss_pred             cCCCCEEEecccccccc-----ccCcccccchhhhHHHHHHHHHHhc-----------------cCeeeecCcEEEEeee
Confidence            44566554332211110     1111222334444444444433221                 1248999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEEe
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (712)
                      +++++++++.+   +.+..+++++||||+|||.+|.||+.+.......                       ..       
T Consensus       135 ~~~~v~v~~~~---g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~~~-----------------------~~-------  181 (288)
T d3c96a1         135 RDGRVLIGARD---GHGKPQALGADVLVGADGIHSAVRAHLHPDQRPL-----------------------RD-------  181 (288)
T ss_dssp             ETTEEEEEEEE---TTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCC-----------------------CC-------
T ss_pred             cCCcEEEEEEc---CCCCeEEEeeceeeccCCccceeeeeeccccccc-----------------------cc-------
Confidence            99999998874   3323568999999999999999987753221000                       00       


Q ss_pred             ecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcEE
Q 005134          283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQII  362 (712)
Q Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV~  362 (712)
                                   .                                                      ...+.  .++++
T Consensus       182 -------------~------------------------------------------------------~~~~~--~~~~~  192 (288)
T d3c96a1         182 -------------P------------------------------------------------------LPHWG--RGRIT  192 (288)
T ss_dssp             -------------C------------------------------------------------------CSCCC--BTTEE
T ss_pred             -------------c------------------------------------------------------ccccc--cCcce
Confidence                         0                                                      00122  38999


Q ss_pred             EEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005134          363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (712)
Q Consensus       363 LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~~~~~  429 (712)
                      ++|||+|.++|+.|||+|++|+|+.+|+++|..   +...+.+|+.|+++|+|+++.++..+.++.+
T Consensus       193 ~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~---~~~~~~al~~y~~~r~pr~~~~~~~~~~~~~  256 (288)
T d3c96a1         193 LLGDAAHLMYPMGANGASQAILDGIELAAALAR---NADVAAALREYEEARRPTANKIILANREREK  256 (288)
T ss_dssp             ECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccceeCCccccchhhhhhhHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999974   4556889999999999999998887765543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.1e-28  Score=256.11  Aligned_cols=239  Identities=21%  Similarity=0.302  Sum_probs=182.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~--~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      ++++|+||||||+||++|+.|+++|++|+||||++..  ...+++..++++++++|+++ |+.+.+.+.+.+...   +.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~---~~   76 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEG---VE   76 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESC---EE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHc-CchHHHHhhcccccc---eE
Confidence            3689999999999999999999999999999999754  34678899999999999999 999999888765432   11


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCc-EEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH-ECV  198 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~-~v~  198 (712)
                      +..   +.......      ......+.....+.|..+++.|++.+.+.+.                   .+.+++ .+.
T Consensus        77 ~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-------------------~~~~~~~~~~  128 (292)
T d1k0ia1          77 IAF---AGQRRRID------LKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVR  128 (292)
T ss_dssp             EEE---TTEEEEEC------HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEE
T ss_pred             EEe---cccccccc------cccccccccceeecHHHHHHHHHHHHHhCCC-------------------cEEEcceeee
Confidence            111   11111111      1111123335678899999999999998876                   455554 555


Q ss_pred             EEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceE
Q 005134          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (712)
Q Consensus       199 ~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (712)
                      .+.++++++++++.  .+|+  +.+++|||||||||.+|.+|++++                                  
T Consensus       129 ~~~~~~~~~~v~~~--~~g~--~~~i~a~~vVgADG~~S~vR~~i~----------------------------------  170 (292)
T d1k0ia1         129 LHDLQGERPYVTFE--RDGE--RLRLDCDYIAGCDGFHGISRQSIP----------------------------------  170 (292)
T ss_dssp             EECTTSSSCEEEEE--ETTE--EEEEECSEEEECCCTTCSTGGGSC----------------------------------
T ss_pred             eeeeccCceEEEEe--cCCc--EEEEEeCEEEECCCCCCcccceee----------------------------------
Confidence            66777888887765  3453  468999999999999999998631                                  


Q ss_pred             EEEeecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccC
Q 005134          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (712)
Q Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~  358 (712)
                                                                                              ...+.  .
T Consensus       171 ------------------------------------------------------------------------~~~~~--~  176 (292)
T d1k0ia1         171 ------------------------------------------------------------------------AERMQ--H  176 (292)
T ss_dssp             ------------------------------------------------------------------------GGGSE--E
T ss_pred             ------------------------------------------------------------------------ecccc--c
Confidence                                                                                    01122  3


Q ss_pred             CcEEEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       359 gRV~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                      ++..++||++|.++|..|+|+|+++.|+.+|+|++..++.+. ...++..|..++.+......+++.
T Consensus       177 ~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  242 (292)
T d1k0ia1         177 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG-RGELLERYSAICLRRIWKAERFSW  242 (292)
T ss_dssp             TTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC-CGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeeeeecCCccccccccccccccccccceeeEecCC-CHHHhhhhHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999988663 567899999998888766555443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.87  E-value=1.4e-21  Score=198.42  Aligned_cols=229  Identities=19%  Similarity=0.229  Sum_probs=163.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~-~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~  121 (712)
                      ..+|+||||||+||++|+.|+++|++|+||||++.+ ...+++..++++++++|+++ |+..++.....     ..+.+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~-----~~~~~~   77 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVELDSISVPS-----SSMEYV   77 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCGGGTCBCC-----CEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHc-CcchhhhccCC-----CcceeE
Confidence            468999999999999999999999999999998875 45578889999999999999 88654433322     123333


Q ss_pred             ecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEE
Q 005134          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (712)
Q Consensus       122 ~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~  201 (712)
                      ....++.+.....                ..........+...+...+.                  ..+++++++++++
T Consensus        78 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~  123 (265)
T d2voua1          78 DALTGERVGSVPA----------------DWRFTSYDSIYGGLYELFGP------------------ERYHTSKCLVGLS  123 (265)
T ss_dssp             ETTTCCEEEEEEC----------------CCCEEEHHHHHHHHHHHHCS------------------TTEETTCCEEEEE
T ss_pred             eccCCceeccccc----------------ccccchhHHHHHHHHHhccc------------------ceeecCcEEEEEE
Confidence            3334444432211                11111122223233332222                  4899999999999


Q ss_pred             EcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhhcccCCCcccccccccEEEEEeecCccccccccCCCceEEEE
Q 005134          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (712)
Q Consensus       202 ~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (712)
                      ++++++++++.   +|+    ++++|+||+|||.+|.+|..+.....                                 
T Consensus       124 ~~~~~v~v~~~---dG~----~~~~d~~v~adG~~s~~r~~~~~~~~---------------------------------  163 (265)
T d2voua1         124 QDSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLLGIET---------------------------------  163 (265)
T ss_dssp             ECSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHHCCCC---------------------------------
T ss_pred             eeCCceEEEEC---CCC----EEEEEEEecccccccccccccccccc---------------------------------
Confidence            99999887764   564    68999999999999998863210000                                 


Q ss_pred             eecCCeEEEEEecCCCCeEEEEEecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcceEEEeecceechhhhccccccCCcE
Q 005134          282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQI  361 (712)
Q Consensus       282 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~g~~~~~~~i~~~~~w~~~~~va~~~~~~~gRV  361 (712)
                                                                                   .        ..+.  ..++
T Consensus       164 -------------------------------------------------------------~--------~~~~--~~~~  172 (265)
T d2voua1         164 -------------------------------------------------------------V--------DRMV--HGRV  172 (265)
T ss_dssp             -------------------------------------------------------------C--------SCSE--ETTE
T ss_pred             -------------------------------------------------------------c--------cccc--cccc
Confidence                                                                         0        0001  2577


Q ss_pred             EEEccCCccCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCchhhHHHHHHhhhHHHHHHHHHHH
Q 005134          362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (712)
Q Consensus       362 ~LvGDAAH~~~P~gG~G~n~gi~DA~~LawkLa~vl~g~a~~~lL~sY~~eRrp~a~~~~~~s~  425 (712)
                      .+.||++|.+.|..++|++.+++|+..|++.|..   .......|+.|+..|.+.++..+..+.
T Consensus       173 ~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~---~~~~~~~l~~~~~~r~~~~~~~~~~~r  233 (265)
T d2voua1         173 LLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSWETRQLQQGHAYLNKVK  233 (265)
T ss_dssp             EECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccceeeeccHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999988864   334577899999999999987776553

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=6.2e-16  Score=165.13  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=99.0

Q ss_pred             eccCcCcCcccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCCCCCCCc-eeec
Q 005134           15 RIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK------LGIKCSVLEKNKAFSTHPQ-AHFI   87 (712)
Q Consensus        15 ~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar------~Gi~v~lvEr~~~~~~~~r-a~~i   87 (712)
                      +..|+.++...-....+..++.-. ..+++||||||||||||++|+.|+|      .|++|+||||...+..+.+ +..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~m~~-~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl   83 (380)
T d2gmha1           5 RITTHYTIYPRDQDKRWEGVNMER-FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL   83 (380)
T ss_dssp             CCCCCTTTSCTTSCGGGSSCCCCC-CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEE
T ss_pred             cccccccccccccCccccccCccc-ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccc
Confidence            444555555454555555554222 2456999999999999999999998      8999999999999877765 5667


Q ss_pred             CHhHHHHHHhhhcHHHHHHhcCCCccc--cceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHH
Q 005134           88 NNRYALVFRKLDGLAEEIERSQPPVDL--WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL  165 (712)
Q Consensus        88 ~~rtmeilr~l~Gl~d~l~~~~~~~~~--~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~  165 (712)
                      .+++++.|-.  ...+    ...+...  .....++....+  ...........    ..+.....+.+..+...|.+.+
T Consensus        84 ~~~~l~~l~p--~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~A  151 (380)
T d2gmha1          84 DPRAFEELFP--DWKE----KGAPLNTPVTEDRFGILTEKY--RIPVPILPGLP----MNNHGNYVVRLGHLVSWMGEQA  151 (380)
T ss_dssp             CTHHHHHHCT--THHH----HTCCCCEECCEEEEEEECSSC--EEECCCCTTST----TCCTTCEECCHHHHHHHHHHHH
T ss_pred             cHHHHHHHcc--chhh----hccccccceecceEEEeeccc--cccccccCchh----cccccceeehhhHHHHHHHHHH
Confidence            8877665532  1111    1222111  111111111111  11111111100    1222345677889999999999


Q ss_pred             HhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEE
Q 005134          166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINV  209 (712)
Q Consensus       166 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v  209 (712)
                      ++.++                   .+..+..+..+..+++++..
T Consensus       152 e~~g~-------------------~~~~~~~~~~~l~~~~g~~~  176 (380)
T d2gmha1         152 EALGV-------------------EVYPGYAAAEILFHEDGSVK  176 (380)
T ss_dssp             HHTTC-------------------EEETTCCEEEEEECTTSSEE
T ss_pred             hhccc-------------------eeeeecceeeeeeccCCcee
Confidence            99887                   77778888877776665433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=7.7e-14  Score=139.55  Aligned_cols=160  Identities=15%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CceeecCHhHHHHH-Hhhh---cHHHHHHhcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVF-RKLD---GLAEEIERSQPP  111 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra~~i~~rtmeil-r~l~---Gl~d~l~~~~~~  111 (712)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+...      .+....+......+ ....   ............
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            3699999999999999999999999999999998765211      00000000000111 0000   000000000000


Q ss_pred             ccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceE
Q 005134          112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (712)
Q Consensus       112 ~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  191 (712)
                      ...   ..+.. ..|.....      ..    .............+.+.|.+++++.|+                   +|
T Consensus        81 ~~~---~~~~~-~~g~~~~~------~~----~~~~~~~~~~~~~i~~~L~~~~~~~gv-------------------~i  127 (251)
T d2i0za1          81 EDI---ITFFE-NLGVKLKE------ED----HGRMFPVSNKAQSVVDALLTRLKDLGV-------------------KI  127 (251)
T ss_dssp             HHH---HHHHH-HTTCCEEE------CG----GGEEEETTCCHHHHHHHHHHHHHHTTC-------------------EE
T ss_pred             HHH---HHHHH-hcCCcccc------cc----ccceecccccHHHHHHHHHHHHHHcCC-------------------cc
Confidence            000   00000 00000000      00    000001223445678889999998887                   99


Q ss_pred             EeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCchhh
Q 005134          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (712)
Q Consensus       192 ~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~VR  240 (712)
                      +++++|+++..+++.+...+.  .+|+    +++||+||.|||.+|..+
T Consensus       128 ~~~~~v~~i~~~~~~~~~v~~--~~g~----~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         128 RTNTPVETIEYENGQTKAVIL--QTGE----VLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             ECSCCEEEEEEETTEEEEEEE--TTCC----EEECSCEEECCCCSSSGG
T ss_pred             cCCcEEEEEEEECCEEEEEEe--CCCC----eEecCeEEEccCCccccc
Confidence            999999999998887654332  3453    789999999999999654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=1.9e-12  Score=129.85  Aligned_cols=146  Identities=18%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------Cce------------eecCHh-HHHHHHhhhcH
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQA------------HFINNR-YALVFRKLDGL  101 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~------~ra------------~~i~~r-tmeilr~l~Gl  101 (712)
                      .+++|||||||||+||++|+.|+++|++|+||||.+.+...      ++.            ...+++ ..++|... ..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~-~~   80 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY-TN   80 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS-CH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh-cc
Confidence            35699999999999999999999999999999999765211      000            011111 11222222 11


Q ss_pred             H---HHHHhcCCCccccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCcc
Q 005134          102 A---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (712)
Q Consensus       102 ~---d~l~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~  178 (712)
                      .   +.+...+....        .. .+..               .    ...-....+.+.|.+.+++.|+        
T Consensus        81 ~~~~~~~~~~g~~~~--------~~-~~~~---------------~----~~~~~a~~i~~~L~~~~~~~gV--------  124 (253)
T d2gqfa1          81 WDFISLVAEQGITYH--------EK-ELGQ---------------L----FCDEGAEQIVEMLKSECDKYGA--------  124 (253)
T ss_dssp             HHHHHHHHHTTCCEE--------EC-STTE---------------E----EETTCTHHHHHHHHHHHHHHTC--------
T ss_pred             cchhhhhhhcCccee--------ee-cCCc---------------c----ccccchhHHHHHHHHHHHHcCC--------
Confidence            1   11111111100        00 0000               0    0111345677889999998887        


Q ss_pred             ccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCCCch
Q 005134          179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       179 ~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                                 +|+++++|++++..+++..+.+....++    .+++||+||.|+|..|.
T Consensus       125 -----------~i~~~~~V~~i~~~~~~~~v~~~~~~~~----~~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         125 -----------KILLRSEVSQVERIQNDEKVRFVLQVNS----TQWQCKNLIVATGGLSM  169 (253)
T ss_dssp             -----------EEECSCCEEEEEECCSCSSCCEEEEETT----EEEEESEEEECCCCSSC
T ss_pred             -----------CeecCceEEEEEeecCCceeEEEEecCC----EEEEeCEEEEcCCcccc
Confidence                       9999999999988766533222111233    37999999999999883

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.34  E-value=1e-12  Score=133.09  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=56.0

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .++-..+.+.|.+.+++.|+                   +++++++|++++.+++.+.|...   +|     +|+||.||
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t~---~g-----~i~a~~vV  199 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKTP---SG-----DVWANHVV  199 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEET---TE-----EEEEEEEE
T ss_pred             eeecccchhHHHHHHHHcCC-------------------EEecceEEEeEEeecceEEEecC---Ce-----EEEcCEEE
Confidence            55667788899999999987                   99999999999988887665542   33     68999999


Q ss_pred             eccCCCch-hhcccCCC
Q 005134          231 GTDGAGST-VRKLVGID  246 (712)
Q Consensus       231 gADG~~S~-VR~~lgi~  246 (712)
                      .|.|++|. +.+.+|+.
T Consensus       200 ~AaG~~s~~l~~~~G~~  216 (276)
T d1ryia1         200 VASGVWSGMFFKQLGLN  216 (276)
T ss_dssp             ECCGGGTHHHHHHTTCC
T ss_pred             ECCCccHHHHHhhcCCC
Confidence            99999985 56677764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.22  E-value=2e-11  Score=127.40  Aligned_cols=68  Identities=10%  Similarity=-0.024  Sum_probs=55.6

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      ..++..+...|...++..+.                   .|+|+++|++++.++++++|++++...++ +..+..+|+||
T Consensus       109 f~~~~~~~~yl~~~~~~~~~-------------------~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~-~~~~~~~d~VI  168 (335)
T d2gv8a1         109 FPHRHTIQEYQRIYAQPLLP-------------------FIKLATDVLDIEKKDGSWVVTYKGTKAGS-PISKDIFDAVS  168 (335)
T ss_dssp             SCBHHHHHHHHHHHHGGGGG-------------------GEECSEEEEEEEEETTEEEEEEEESSTTC-CEEEEEESEEE
T ss_pred             CCchHHHHHHHHHHHHHhhh-------------------cccCceEEEEEEecCCEEEEEEEecCCCC-eEEEEEeeEEE
Confidence            45688899999888877654                   89999999999999999989888655443 34567899999


Q ss_pred             eccCCCch
Q 005134          231 GTDGAGST  238 (712)
Q Consensus       231 gADG~~S~  238 (712)
                      .|+|..|.
T Consensus       169 ~AtG~~s~  176 (335)
T d2gv8a1         169 ICNGHYEV  176 (335)
T ss_dssp             ECCCSSSS
T ss_pred             Eccccccc
Confidence            99999984

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.21  E-value=4.1e-11  Score=121.41  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             cChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       152 i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      +.-..+...|.+.+++.|+                   +++++++|++++.++++++|...   +|     +++||.||.
T Consensus       147 ~~p~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~V~t~---~g-----~i~a~~VVi  199 (281)
T d2gf3a1         147 LFSENCIRAYRELAEARGA-------------------KVLTHTRVEDFDISPDSVKIETA---NG-----SYTADKLIV  199 (281)
T ss_dssp             EEHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECSSCEEEEET---TE-----EEEEEEEEE
T ss_pred             ccccccccccccccccccc-------------------cccCCcEEEEEEEECCEEEEEEC---Cc-----EEEcCEEEE
Confidence            3445788889999999987                   99999999999999999765542   33     589999999


Q ss_pred             ccCCCch-hhcccCC
Q 005134          232 TDGAGST-VRKLVGI  245 (712)
Q Consensus       232 ADG~~S~-VR~~lgi  245 (712)
                      |-|++|. +-+.+|+
T Consensus       200 AaG~~s~~l~~~lg~  214 (281)
T d2gf3a1         200 SMGAWNSKLLSKLNL  214 (281)
T ss_dssp             CCGGGHHHHGGGGTE
T ss_pred             CCCCcchhhHHhcCC
Confidence            9999875 3344443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.09  E-value=2.8e-10  Score=116.40  Aligned_cols=139  Identities=20%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ..++||+||||||+||++|..|+++|++++||||.+.+-                    |.+..-.--+...+...    
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iG--------------------GtW~~n~ypg~~~d~~~----   60 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG--------------------GVWYWNRYPGARCDIES----   60 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------THHHHCCCTTCBCSSCT----
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcc--------------------cccccCCCCCceecccc----
Confidence            457999999999999999999999999999999998641                    22210000000000000    


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                             ....... .+..+.  ..+......++..+...|.+.+++++..                 ..|+|+++|+++
T Consensus        61 -------~~~~~s~-~~~~~~--~~~~~~~~p~~~e~~~Yl~~~a~~~~L~-----------------~~I~f~t~V~~~  113 (298)
T d1w4xa1          61 -------IEYCYSF-SEEVLQ--EWNWTERYASQPEILRYINFVADKFDLR-----------------SGITFHTTVTAA  113 (298)
T ss_dssp             -------TTSSCCS-CHHHHH--HCCCCBSSCBHHHHHHHHHHHHHHTTGG-----------------GGEECSCCEEEE
T ss_pred             -------ccccccc-cccccC--CCCCccccCccchHHHHHHHHHHHcCCc-----------------ccccCCcEEEEE
Confidence                   0000000 000000  0011122346778888899988887751                 269999999999


Q ss_pred             EEcCC--eEEEEEEeccCCceeeEEEEecEEEeccCCCc
Q 005134          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (712)
Q Consensus       201 ~~~~~--~v~v~v~~~~~g~~~~~~i~ad~VVgADG~~S  237 (712)
                      +.+++  ..+|++.   ++    .++++|+||.|.|..|
T Consensus       114 ~~de~~~~W~V~~~---~~----~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1         114 AFDEATNTWTVDTN---HG----DRIRARYLIMASGQLS  145 (298)
T ss_dssp             EEETTTTEEEEEET---TC----CEEEEEEEEECCCSCC
T ss_pred             EEecCCCceeeccc---cc----cccccceEEEeecccc
Confidence            86544  4444432   33    2689999999999765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.06  E-value=1.6e-09  Score=111.14  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=35.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+++||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45799999999999999999999999999999998765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.04  E-value=4e-09  Score=109.26  Aligned_cols=63  Identities=13%  Similarity=0.017  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEE-EEEEeccCCceeeEEEEecEEEecc
Q 005134          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (712)
Q Consensus       155 ~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~-v~v~~~~~g~~~~~~i~ad~VVgAD  233 (712)
                      ..+...|.+.+.+.|+                   +|+++++++++..+++.+. +.+.+..+|+  ..+|.|+-||-|-
T Consensus       158 ~~i~~~l~~~~~~~gv-------------------~i~~~~~~~~li~~~~~v~g~~~~~~~~g~--~~~i~Ak~VvlAT  216 (336)
T d2bs2a2         158 HTMLFAVANECLKLGV-------------------SIQDRKEAIALIHQDGKCYGAVVRDLVTGD--IIAYVAKGTLIAT  216 (336)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------EEECSEEEEEEEEETTEEEEEEEEETTTCC--EEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhccc-------------------cccceeeeeecccccccccceeEEeccCCc--EEEEecCeEEEec
Confidence            4577788888888887                   9999999999988888765 4455445564  5689999999998


Q ss_pred             CCCch
Q 005134          234 GAGST  238 (712)
Q Consensus       234 G~~S~  238 (712)
                      |..+.
T Consensus       217 GG~~~  221 (336)
T d2bs2a2         217 GGYGR  221 (336)
T ss_dssp             CCCGG
T ss_pred             ccccc
Confidence            87653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.03  E-value=1.5e-09  Score=112.09  Aligned_cols=38  Identities=29%  Similarity=0.445  Sum_probs=35.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+.+||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~   58 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP   58 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            56799999999999999999999999999999998764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.00  E-value=7.1e-10  Score=113.47  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             ccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEE
Q 005134          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (712)
Q Consensus       151 ~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VV  230 (712)
                      .+.-..|...|.+.+++.|+                   +++++++|++++.+++.++....  +.|     +|+||.||
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv-------------------~i~~~~~V~~i~~~~~~v~~V~T--~~g-----~i~a~~VV  197 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTGVQT--ADG-----VIPADIVV  197 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEEEEE--TTE-----EEECSEEE
T ss_pred             ccchhhhhhhHHhhhhcccc-------------------cccCCceEEEEEEeCCEEEEEec--cce-----eEECCEEE
Confidence            45567788899999999887                   99999999999999998753322  233     68999999


Q ss_pred             eccCCCch-hhcccCCC
Q 005134          231 GTDGAGST-VRKLVGID  246 (712)
Q Consensus       231 gADG~~S~-VR~~lgi~  246 (712)
                      .|-|++|. +.+.+|+.
T Consensus       198 ~aaG~~s~~l~~~~g~~  214 (305)
T d1pj5a2         198 SCAGFWGAKIGAMIGMA  214 (305)
T ss_dssp             ECCGGGHHHHHHTTTCC
T ss_pred             EecchhHHHHHHHcCCc
Confidence            99999986 45555544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.90  E-value=9.5e-10  Score=111.21  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +||+||||||+||++|+.|+++|++|+||||++.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            58999999999999999999999999999998765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.89  E-value=1.3e-08  Score=104.85  Aligned_cols=38  Identities=29%  Similarity=0.424  Sum_probs=35.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+++||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            45799999999999999999999999999999998755

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=1.8e-08  Score=101.67  Aligned_cols=140  Identities=14%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCc-------eeecCHhHHHHHHhhhcHHHHHHhcCCCc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQ-------AHFINNRYALVFRKLDGLAEEIERSQPPV  112 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~-Gi~v~lvEr~~~~~~~~r-------a~~i~~rtmeilr~l~Gl~d~l~~~~~~~  112 (712)
                      ..++||+||||||+||++|+.|+++ |++|+||||++.+-....       ...+......+++.+ |+         +.
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~-g~---------~~  100 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEI-GV---------AY  100 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHH-TC---------CC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHc-CC---------ce
Confidence            4579999999999999999999875 999999999986532111       122222233333332 21         11


Q ss_pred             cccceeEeeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEE
Q 005134          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL  192 (712)
Q Consensus       113 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  192 (712)
                      ....                             ........+..+...+.+.+...+.                   .+.
T Consensus       101 ~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  132 (278)
T d1rp0a1         101 DEQD-----------------------------TYVVVKHAALFTSTIMSKLLARPNV-------------------KLF  132 (278)
T ss_dssp             EECS-----------------------------SEEEESCHHHHHHHHHHHHHTSTTE-------------------EEE
T ss_pred             ecCC-----------------------------ccceecccHHHHHHHHHHHHHhCCC-------------------EEE
Confidence            0000                             0001122345566666666665554                   788


Q ss_pred             eCcEEEEEEEcCCeEEEEEEec--------cCCceeeEEEEecEEEeccCCCch
Q 005134          193 MGHECVSVSATDQCINVIASFL--------KEGKCTERNIQCNILIGTDGAGST  238 (712)
Q Consensus       193 ~g~~v~~v~~~~~~v~v~v~~~--------~~g~~~~~~i~ad~VVgADG~~S~  238 (712)
                      +++++..+..+++.+.-.+...        ........++++++||.|+|....
T Consensus       133 ~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         133 NAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             ETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             eCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence            8888888877777654322110        011112357999999999996543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=2.5e-08  Score=87.40  Aligned_cols=100  Identities=19%  Similarity=0.291  Sum_probs=73.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+                   .+.                    
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~-------------------~~d--------------------   63 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-------------------SMD--------------------   63 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-------------------SSC--------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch-------------------hhh--------------------
Confidence            35799999999999999999999999999999875421                   000                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      .++-..+.+.+++.|+                   ++++++++++++.
T Consensus        64 --------------------------------~ei~~~l~~~l~~~GV-------------------~i~~~~~v~~v~~   92 (122)
T d1v59a2          64 --------------------------------GEVAKATQKFLKKQGL-------------------DFKLSTKVISAKR   92 (122)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             --------------------------------hhhHHHHHHHHHhccc-------------------eEEeCCEEEEEEE
Confidence                                            1233445566667776                   9999999999998


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEec
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      +++++.+.+...+...++..++++|+|+.|
T Consensus        93 ~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          93 NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            877655554433322234578999999876

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.6e-08  Score=102.17  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~   77 (712)
                      |+..++||||||+|++||++|+.+++.  |.+|+|+||.+.
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            446789999999999999999999987  789999999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.1e-08  Score=103.66  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=32.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ||+|||||++||++|+.|+++|++|+||||++.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            8999999999999999999999999999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.76  E-value=3.2e-08  Score=86.25  Aligned_cols=100  Identities=24%  Similarity=0.320  Sum_probs=77.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      ...-+|+|||||+.|+=+|..|++.|.+|+|+|+.+.+.+                   ++.                  
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-------------------~~d------------------   62 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------AVD------------------   62 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TSC------------------
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-------------------ccc------------------
Confidence            3346799999999999999999999999999998875311                   110                  


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                                                        .++...+.+.+++.|+                   +++++++++++
T Consensus        63 ----------------------------------~ei~~~l~~~l~~~Gv-------------------~i~~~~~v~~i   89 (119)
T d3lada2          63 ----------------------------------EQVAKEAQKILTKQGL-------------------KILLGARVTGT   89 (119)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHTTE-------------------EEEETCEEEEE
T ss_pred             ----------------------------------chhHHHHHHHHHhcCc-------------------eeecCcEEEEE
Confidence                                              1233445556667776                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      +.+++++++++..  .+.  ..++.+|+|+.|=|
T Consensus        90 ~~~~~~v~v~~~~--~~~--~~~~~~D~vlvAvG  119 (119)
T d3lada2          90 EVKNKQVTVKFVD--AEG--EKSQAFDKLIVAVG  119 (119)
T ss_dssp             EECSSCEEEEEES--SSE--EEEEEESEEEECSC
T ss_pred             EEeCCEEEEEEEE--CCC--CEEEECCEEEEeeC
Confidence            9999998888873  222  35789999998866

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.74  E-value=4.5e-08  Score=85.01  Aligned_cols=95  Identities=17%  Similarity=0.380  Sum_probs=73.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-+                   ++.                    
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-------------------~~d--------------------   62 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------GFE--------------------   62 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TSC--------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecc-------------------ccc--------------------
Confidence            35799999999999999999999999999999886410                   100                    


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus        63 --------------------------------~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i~~   91 (117)
T d1ebda2          63 --------------------------------KQMAAIIKKRLKKKGV-------------------EVVTNALAKGAEE   91 (117)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEE
T ss_pred             --------------------------------chhHHHHHHHHHhcCC-------------------EEEcCCEEEEEEE
Confidence                                            1233445566677776                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      +++++++++.  .+|+  ..++.+|+||.
T Consensus        92 ~~~~~~v~~~--~~g~--~~~i~~D~Vlv  116 (117)
T d1ebda2          92 REDGVTVTYE--ANGE--TKTIDADYVLV  116 (117)
T ss_dssp             ETTEEEEEEE--ETTE--EEEEEESEEEE
T ss_pred             cCCEEEEEEE--eCCC--EEEEEeEEEEE
Confidence            9999887775  2443  46899999985

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=8.9e-08  Score=98.88  Aligned_cols=40  Identities=20%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++..++||||||+|++||++|+.++++|.+|+|+||.+..
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             CCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            3467899999999999999999999999999999998643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.71  E-value=5.2e-08  Score=99.75  Aligned_cols=37  Identities=35%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3458999999999999999999999999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=5.3e-08  Score=85.37  Aligned_cols=97  Identities=16%  Similarity=0.351  Sum_probs=76.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+++|||||..||=+|..|++.|.+|+|+||.+.+.+                   ++.                     
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-------------------~~d---------------------   65 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-------------------TMD---------------------   65 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------TSC---------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-------------------hhh---------------------
Confidence            5799999999999999999999999999999876421                   110                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+-..|.+.+++.|+                   ++++|+++.+++.+
T Consensus        66 -------------------------------~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i~~~   95 (123)
T d1dxla2          66 -------------------------------AEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVDTS   95 (123)
T ss_dssp             -------------------------------HHHHHHHHHHHHHSSC-------------------CEECSEEEEEEECS
T ss_pred             -------------------------------hcchhhhhhhhhcccc-------------------eEEcCCceEEEEEc
Confidence                                           1223445566677776                   99999999999999


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEec
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGT  232 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgA  232 (712)
                      ++++++++...++|+  +.+++||+|+.|
T Consensus        96 ~~~~~v~~~~~~~g~--~~~i~~D~vLvA  122 (123)
T d1dxla2          96 GDGVKLTVEPSAGGE--QTIIEADVVLVS  122 (123)
T ss_dssp             SSSEEEEEEESSSCC--CEEEEESEEECC
T ss_pred             cCeEEEEEEECCCCe--EEEEEcCEEEEc
Confidence            999998888665654  467999999865

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.3e-07  Score=81.79  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+.                     
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-------------------~~d---------------------   61 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------SFD---------------------   61 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TSC---------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-------------------hcc---------------------
Confidence            4699999999999999999999999999999875311                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+-+.+.+.+++.|+                   +++++++++.++.+
T Consensus        62 -------------------------------~~~~~~~~~~l~~~GV-------------------~~~~~~~v~~i~~~   91 (116)
T d1gesa2          62 -------------------------------PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVKN   91 (116)
T ss_dssp             -------------------------------HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEEC
T ss_pred             -------------------------------hhhHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence                                           1233445566666776                   99999999999887


Q ss_pred             CCe-EEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          204 DQC-INVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       204 ~~~-v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      +++ +++++.   +|+    ++.+|.||.|-|
T Consensus        92 ~~~~~~v~~~---~g~----~~~~D~vi~a~G  116 (116)
T d1gesa2          92 TDGSLTLELE---DGR----SETVDCLIWAIG  116 (116)
T ss_dssp             TTSCEEEEET---TSC----EEEESEEEECSC
T ss_pred             CCcEEEEEEC---CCC----EEEcCEEEEecC
Confidence            654 454443   453    688999999876

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.60  E-value=1.3e-08  Score=96.72  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=36.4

Q ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 005134           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (712)
Q Consensus        39 ~~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~   79 (712)
                      |+..++||+||||||+||++|+.|+|+|.+++|+|+.....
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~   41 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND   41 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccc
Confidence            34667999999999999999999999999999999876543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.59  E-value=1.2e-07  Score=93.33  Aligned_cols=37  Identities=22%  Similarity=0.528  Sum_probs=33.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+.+|+|||||++||++|+.|+++|.+|+||||...
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4456899999999999999999999999999999753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.5e-07  Score=80.16  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+||.+.+-+                   ++.                     
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~d---------------------   62 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-------------------SFD---------------------   62 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TSC---------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc-------------------chh---------------------
Confidence            4799999999999999999999999999999875410                   100                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+-+.+.+.+++.|+                   ++++++++++++.+
T Consensus        63 -------------------------------~~~~~~~~~~l~~~Gv-------------------~i~~~~~v~~i~~~   92 (125)
T d3grsa2          63 -------------------------------SMISTNCTEELENAGV-------------------EVLKFSQVKEVKKT   92 (125)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------EEETTEEEEEEEEE
T ss_pred             -------------------------------hHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence                                           1123445566667776                   99999999999999


Q ss_pred             CCeEEEEEEeccCCce--eeEEEEecEEEeccC
Q 005134          204 DQCINVIASFLKEGKC--TERNIQCNILIGTDG  234 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~--~~~~i~ad~VVgADG  234 (712)
                      ++++.+++.....|..  ....+.+|+||-|=|
T Consensus        93 ~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          93 LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9998887765555532  224578999998866

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.58  E-value=8.5e-08  Score=84.16  Aligned_cols=99  Identities=20%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeee
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~  122 (712)
                      .-+++|||||..|+=+|..|++.|.+|+|+|+.+..-+.     +.                                  
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-----~d----------------------------------   66 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----AD----------------------------------   66 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----SC----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-----ch----------------------------------
Confidence            357999999999999999999999999999998754210     00                                  


Q ss_pred             cCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEE
Q 005134          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (712)
Q Consensus       123 ~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~  202 (712)
                                                      ..+-..|.+.+++.|+                   ++++++++++++.
T Consensus        67 --------------------------------~~~~~~l~~~l~~~gv-------------------~~~~~~~v~~v~~   95 (125)
T d1ojta2          67 --------------------------------RDLVKVWQKQNEYRFD-------------------NIMVNTKTVAVEP   95 (125)
T ss_dssp             --------------------------------HHHHHHHHHHHGGGEE-------------------EEECSCEEEEEEE
T ss_pred             --------------------------------hhHHHHHHHHHHHcCc-------------------ccccCcEEEEEEE
Confidence                                            1233445566667676                   9999999999999


Q ss_pred             cCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       203 ~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      +++++.+++...+ |+  ..++++|+|+.|=|
T Consensus        96 ~~~g~~v~~~~~~-g~--~~~i~~D~vl~A~G  124 (125)
T d1ojta2          96 KEDGVYVTFEGAN-AP--KEPQRYDAVLVAAG  124 (125)
T ss_dssp             ETTEEEEEEESSS-CC--SSCEEESCEEECCC
T ss_pred             cCCcEEEEEEeCC-CC--eEEEEcCEEEEecC
Confidence            9999988887432 22  34799999999987

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=2.4e-08  Score=97.55  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||||++||++|+.|+++|.+|+||||++.+
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            45799999999999999999999999999999999865

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.54  E-value=2.9e-07  Score=81.67  Aligned_cols=35  Identities=17%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|++|+|+|+.+.+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            57999999999999999999999999999998754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.3e-07  Score=93.24  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+++||||||+|++||++|+.+++.| +|+||||.+..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            56799999999999999999999988 99999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.51  E-value=3.1e-07  Score=79.98  Aligned_cols=99  Identities=12%  Similarity=0.203  Sum_probs=71.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEeeec
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~~~~  123 (712)
                      -.|+|||||++|+=+|..|+++|.+|+++|+.+...+                   ++.                     
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-------------------~~d---------------------   62 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------IKD---------------------   62 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------CCS---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-------------------ccc---------------------
Confidence            5799999999999999999999999999999874321                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEc
Q 005134          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (712)
Q Consensus       124 ~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~  203 (712)
                                                     ..+-+.+.+.+++.|+                   +++++++++.++.+
T Consensus        63 -------------------------------~~~~~~~~~~l~~~gI-------------------~v~~~~~v~~i~~~   92 (121)
T d1mo9a2          63 -------------------------------NETRAYVLDRMKEQGM-------------------EIISGSNVTRIEED   92 (121)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------EEESSCEEEEEEEC
T ss_pred             -------------------------------cchhhhhhhhhhcccc-------------------EEEcCCEEEEEEec
Confidence                                           0122344555566666                   99999999999998


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          204 DQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       204 ~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      +++....+.....+.  ++++.||+||.|=|
T Consensus        93 ~~~~~~~~~~~~~~~--~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          93 ANGRVQAVVAMTPNG--EMRIETDFVFLGLG  121 (121)
T ss_dssp             TTSBEEEEEEEETTE--EEEEECSCEEECCC
T ss_pred             CCceEEEEEEEeCCC--CEEEEcCEEEEEEC
Confidence            776443333222332  35899999999866

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.42  E-value=3.7e-07  Score=78.78  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            57999999999999999999999999999998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.41  E-value=4.5e-07  Score=78.42  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+||.+.+
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            47999999999999999999999999999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.3e-06  Score=77.65  Aligned_cols=96  Identities=16%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeE
Q 005134           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar----~Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~  119 (712)
                      .+|+|||||++|+-+|..|++    .|++|+++|+.+.+-..                   +                  
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~-------------------~------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-------------------I------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-------------------T------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc-------------------c------------------
Confidence            479999999999999999964    59999999987653100                   0                  


Q ss_pred             eeecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEE
Q 005134          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (712)
Q Consensus       120 ~~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~  199 (712)
                                                      ++ ..+...+.+.+++.|+                   ++++++++.+
T Consensus        81 --------------------------------~~-~~~~~~~~~~l~~~GV-------------------~~~~~~~V~~  108 (137)
T d1m6ia2          81 --------------------------------LP-EYLSNWTMEKVRREGV-------------------KVMPNAIVQS  108 (137)
T ss_dssp             --------------------------------SC-HHHHHHHHHHHHTTTC-------------------EEECSCCEEE
T ss_pred             --------------------------------CC-HHHHHHHHHHHHhCCc-------------------EEEeCCEEEE
Confidence                                            00 1234456677778887                   9999999999


Q ss_pred             EEEcCCeEEEEEEeccCCceeeEEEEecEEEeccCC
Q 005134          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (712)
Q Consensus       200 v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG~  235 (712)
                      ++.+++.+.+++.   +|+    ++.||+||.|-|.
T Consensus       109 i~~~~~~~~v~l~---~G~----~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         109 VGVSSGKLLIKLK---DGR----KVETDHIVAAVGL  137 (137)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEEeecC
Confidence            9999888877664   564    7999999999873

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.36  E-value=1.3e-06  Score=76.06  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            57999999999999999999999999999998743

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.35  E-value=9e-07  Score=76.48  Aligned_cols=95  Identities=16%  Similarity=0.253  Sum_probs=69.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCceeecCHhHHHHHHhhhcHHHHHHhcCCCccccceeEe
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~---Gi~v~lvEr~~~~~~~~ra~~i~~rtmeilr~l~Gl~d~l~~~~~~~~~~~~~~~  120 (712)
                      -+|+|||||++|+-+|..|++.   |.+|+|+|+.+.+-+                   ++                   
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-------------------~~-------------------   60 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------------------GF-------------------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------------------TS-------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-------------------cc-------------------
Confidence            5799999999999999887654   889999998764310                   00                   


Q ss_pred             eecCCCCeeeeecCCCccccccccCCccccccChhHHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEE
Q 005134          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (712)
Q Consensus       121 ~~~~~G~~l~~~~~~~~~~~~~~~~p~~~~~i~q~~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v  200 (712)
                                                      + .++.+.+.+.+++.|+                   +++++++++++
T Consensus        61 --------------------------------d-~~~~~~~~~~l~~~GI-------------------~v~~~~~v~~i   88 (117)
T d1feca2          61 --------------------------------D-SELRKQLTEQLRANGI-------------------NVRTHENPAKV   88 (117)
T ss_dssp             --------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEETCCEEEE
T ss_pred             --------------------------------c-chhhHHHHHHHhhCcE-------------------EEEcCCEEEEE
Confidence                                            0 1233456666777776                   99999999999


Q ss_pred             EEcCCeEEEEEEeccCCceeeEEEEecEEEeccC
Q 005134          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (712)
Q Consensus       201 ~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVgADG  234 (712)
                      +.+++++.. +.. .+|+    ++.||+||.|-|
T Consensus        89 ~~~~~g~~~-v~~-~~g~----~i~~D~Vi~a~G  116 (117)
T d1feca2          89 TKNADGTRH-VVF-ESGA----EADYDVVMLAIG  116 (117)
T ss_dssp             EECTTSCEE-EEE-TTSC----EEEESEEEECSC
T ss_pred             EECCCCEEE-EEE-CCCC----EEEcCEEEEecC
Confidence            987776532 222 2453    689999999977

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.34  E-value=7.7e-06  Score=84.40  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             CccCCCCcccCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCC
Q 005134           35 KTIVSNEAVVPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAF   78 (712)
Q Consensus        35 ~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar----~Gi~v~lvEr~~~~   78 (712)
                      .+++.+..++||||||+|++||++|+.|++    +|.+|+||||.+..
T Consensus        13 ~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          13 DEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             GGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ccCCceEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            334445678999999999999999999985    69999999997654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.3e-06  Score=82.08  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+.||+||||||+||.+|+.|+|.|.+|+||||..
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            456899999999999999999999999999999865

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.32  E-value=1.7e-07  Score=91.98  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      .||+||||||+||++|+.|+++|+ +|+||||++.+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            389999999999999999999998 69999998765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.4e-07  Score=86.35  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ....+|+||||||+||++|+.|+++|++|+||||.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            44578999999999999999999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=5.3e-06  Score=72.02  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      -+++|||||+.|+=+|..|++.|.+|+|+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999964

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.27  E-value=2.4e-07  Score=89.44  Aligned_cols=37  Identities=38%  Similarity=0.624  Sum_probs=34.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ++|||+||||||+||++|+.|+|+|.+|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            5799999999999999999999999999999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.26  E-value=1.3e-06  Score=75.99  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||++|+-+|..|+++|.+|+|+|+.+.+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            57999999999999999999999999999998753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=6.5e-06  Score=79.11  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .||||||||||+|+.+|+.++|.|.+++|||++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            4899999999999999999999999999999874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.22  E-value=2.3e-06  Score=73.78  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~~   77 (712)
                      -+|+|||||++|+-+|..|+..|   .+|+|+|+.+.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            57999999999999998877654   57999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.22  E-value=3.7e-07  Score=88.75  Aligned_cols=37  Identities=27%  Similarity=0.534  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|||+||||||+||++|+.|+++|.+|+||||.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            5679999999999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=4e-07  Score=88.32  Aligned_cols=37  Identities=32%  Similarity=0.574  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|||+||||||+||++|+.|++.|.+|+|||++..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            4679999999999999999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.6e-07  Score=92.33  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+.+|+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4578999999999999999999999999999998764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.17  E-value=5.4e-07  Score=86.77  Aligned_cols=37  Identities=38%  Similarity=0.603  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|||+||||||+||++|+.+++.|.+|+|||++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4699999999999999999999999999999997653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.16  E-value=7e-06  Score=77.49  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~   79 (712)
                      ++|+|||||++|+.+|..|++.  +.+|+|+||.+.++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~   38 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc
Confidence            4699999999999999999998  56899999987653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.15  E-value=4.5e-06  Score=72.53  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|+++|.+|+|+|+.+..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            57999999999999999999999999999988643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.15  E-value=5.1e-07  Score=90.56  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            5999999999999999999999999999998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.6e-07  Score=83.49  Aligned_cols=33  Identities=33%  Similarity=0.593  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      |||+||||||+||++|+.++|.|.+|+|||++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            899999999999999999999999999999753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=7.2e-07  Score=90.51  Aligned_cols=35  Identities=37%  Similarity=0.450  Sum_probs=33.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|||||||||+||++|..|+++|.+|+|+|+++.+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            69999999999999999999999999999999865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=1.3e-06  Score=82.27  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      ...+|+||||||+||++|..|+++|+ +|+||||.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            35789999999999999999999999 59999998653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=9.3e-07  Score=84.94  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|||+||||||+|+++|+.|++.|.+|+|||+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6999999999999999999999999999999853

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=1.3e-06  Score=84.93  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|||+||||||+||++|+.+++.|.+|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            599999999999999999999999999999988754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.06  E-value=1.3e-06  Score=84.02  Aligned_cols=35  Identities=40%  Similarity=0.630  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .++||+||||||+||++|+.++|.|.+|+||||..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            46999999999999999999999999999999965

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.04  E-value=1.5e-06  Score=83.74  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +.++||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            567999999999999999999999999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.03  E-value=2e-06  Score=83.81  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=35.7

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        40 ~~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .....+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            345689999999999999999999999999999999865

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.8e-06  Score=81.57  Aligned_cols=35  Identities=31%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36999999999999999999999999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=1.5e-06  Score=84.49  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G-------i~v~lvEr~~~~   78 (712)
                      ++|+||||||+||++|..|+++|       ++|+||||.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            68999999999999999999998       579999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.90  E-value=3e-06  Score=86.45  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            57999999999999999999999999999999865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.89  E-value=3.9e-06  Score=87.09  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +.++||||||+|++|+++|..|++.|++|+|+|+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            46799999999999999999999999999999997644

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.82  E-value=9.7e-06  Score=85.20  Aligned_cols=58  Identities=29%  Similarity=0.296  Sum_probs=48.3

Q ss_pred             cCcCcccccccccCCCCccCCCCcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 005134           19 FPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (712)
Q Consensus        19 ~~~p~~~~~~~~~s~~~~~~~~~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~~   78 (712)
                      ++.+.+++++..+++.....  ...+|+||||||++|+++|..|++.| ++|+|||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~p~~~~--~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1           2 LPAQQIDVQSSLLSDPSKVA--GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             CCCCCCCCGGGSBCCGGGTT--TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CccccccccccccCCccccc--CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            45667788888887777544  35699999999999999999999998 899999999653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6.4e-06  Score=78.94  Aligned_cols=38  Identities=13%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~~   78 (712)
                      ..+++++|||||++|+.+|..|+++|.  +|++|++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            356899999999999999999999886  59999887654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=7e-06  Score=83.43  Aligned_cols=38  Identities=37%  Similarity=0.535  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~~   79 (712)
                      .++||+||||||+||++|+.|+++  |++|+|||+++.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            368999999999999999999975  99999999998763

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.77  E-value=6.6e-06  Score=79.55  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~--Gi~v~lvEr~~~~   78 (712)
                      .+|+||||||+||++|..|+++  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4799999999999999999876  7799999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.72  E-value=1.1e-05  Score=79.75  Aligned_cols=33  Identities=18%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      |||+||||||+|+++|+.+++.|.+|+||||..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            799999999999999999999999999999863

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.64  E-value=1.4e-05  Score=82.89  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~   75 (712)
                      ..++||||||+|++|+++|..|+++|++|+|+|+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            56799999999999999999999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.61  E-value=2.1e-05  Score=75.93  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      +.|||+||||||+|+++|+.+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            35999999999999999999999986 688899864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.61  E-value=1.3e-05  Score=77.98  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~~   78 (712)
                      .+|||+||||||+|+++|+.+++.|. +|.|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            47999999999999999999999986 58999988753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.57  E-value=2.9e-05  Score=76.57  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=35.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..++||+||||||+|+.+|+.|++.|.+|+|||+.+..
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            56799999999999999999999999999999997754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=0.00013  Score=66.10  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999965 7899999987754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.49  E-value=2.6e-05  Score=80.80  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+||||||+|++|+++|..|++.|++|+|+|+..
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            3799999999999999999999999999999964

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.49  E-value=0.00047  Score=64.51  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=81.3

Q ss_pred             ccCCCCCCCCCcceeec-CCCCcceeeeCCCCCcceEEEEEcCCcc-chHHHHHHHHhhhhc---C--------------
Q 005134          549 VPSANPGSRLPHMNVRV-LSTEIISTLDLVSGDKVEFLLIIAPVEE-SYHLARAALKVAEDF---K--------------  609 (712)
Q Consensus       549 ~p~~~pG~R~PH~~l~~-~~~~~~St~Dl~~~~~~~f~Ll~~~~~~-~~~~~~aa~~~~~~~---g--------------  609 (712)
                      ...-.+|.|+|.+.+.+ .++..+-+.+.+-.+ +.|-++++++.- ...-..+..++++.+   .              
T Consensus        14 A~~~~iG~R~~sa~V~R~aDa~p~~L~~~~~ad-GrfrI~vFaGd~~~~~~~~~l~~la~~L~s~~s~~~r~t~~~~d~~   92 (201)
T d1pn0a2          14 AKNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTD-GRFRIIVFAGKATDATQMSRIKKFAAYLDSENSVISRYTPKGADRN   92 (201)
T ss_dssp             BTTSCTTSBCCCCEEEETTTTEEEEGGGGCCCS-SCEEEEEEEECTTSHHHHHHHHHHHHHHHSTTSHHHHHSBTTSCTT
T ss_pred             hcCCCCceecCCceEEEecCCCEeehhccccCC-CcEEEEEEecCCCccchhhHHHHHHHHHhcccchhhhccCCCCCCC
Confidence            34567999999999876 355666777766543 248887775421 111112222232221   1              


Q ss_pred             CceEEEEEcCCCC-cchhhhhhcccc-CCC---CcccchhhhcccCCccchhhhhcccC-Cc-eEEEcCCceEEEeeCCC
Q 005134          610 VPTKVCVLWPAGT-TNEVEFRSAAEL-APW---KNYIDVEEVKRSSDSLSWWRICKMTD-MG-AILVRPDDHIAWRSKSG  682 (712)
Q Consensus       610 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~-~g-avLVRPDg~VaWr~~~~  682 (712)
                      --+++..|..+.. +.|-.+.+.... .-|   ..|.|-.....  ..+..++.+||.+ .| .|+|||||||+|-..  
T Consensus        93 ~~i~~~~V~~~~~~~ie~~dlP~~~~~~~~~~~~~~~d~~~~~~--~~~~ay~~~GId~~~G~vVVVRPDgyVg~v~~--  168 (201)
T d1pn0a2          93 SRIDVITIHSCHRDDIEMHDFPAPALHPKWQYDFIYADCDSWHH--PHPKSYQAWGVDETKGAVVVVRPDGYTSLVTD--  168 (201)
T ss_dssp             SSEEEEEEESSCTTSCCGGGSCTTTTSCTTCCSSEEECSCCSSS--CCCCHHHHHTBCTTTCEEEEECTTSBEEEEEC--
T ss_pred             CcEEEEEEecCCCCccccccccccccCCcceEEeeecccccccC--CcccHHHHhCCCCCceEEEEECCCcceEEEEc--
Confidence            1256666643321 111111111111 112   22222110000  1247888899986 45 688899999999975  


Q ss_pred             CCCChHHHHHHHHHHhhCCCCCCC
Q 005134          683 VSGNPKLEMEMAFSAVLGIKPVNV  706 (712)
Q Consensus       683 ~~~~~~~~l~~~~~~~~~~~~~~~  706 (712)
                       -+| ...|..-+..+|=....+.
T Consensus       169 -Ldd-~~~L~~yF~~fl~~~~~~~  190 (201)
T d1pn0a2         169 -LEG-TAEIDRYFSGILVEPKEKS  190 (201)
T ss_dssp             -TTT-HHHHHHHHHTTBCCCSSBC
T ss_pred             -ccc-HHHHHHHHHHhhhCccccc
Confidence             234 4679999998886654443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=8e-06  Score=79.11  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=27.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr   74 (712)
                      ++|+|||||++||++|+.|+++|.+|+|+|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            4699999999999999999999988766665

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.34  E-value=0.00015  Score=66.97  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +-+|+|||||++|+-+|..|++.|.++.|+++.+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            46799999999999999999999988877776543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.31  E-value=6.5e-05  Score=77.69  Aligned_cols=35  Identities=34%  Similarity=0.521  Sum_probs=33.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .||+||||+|++|+.+|..|++.|.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            58999999999999999999999999999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.17  E-value=0.00012  Score=76.38  Aligned_cols=37  Identities=30%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~G-i~v~lvEr~~~   77 (712)
                      ...+|+||||||.+|+++|..|++.+ ++|+|||+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34699999999999999999999986 89999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00011  Score=71.00  Aligned_cols=33  Identities=18%  Similarity=0.466  Sum_probs=28.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~G---i~v~lvEr~~   76 (712)
                      ++|+||||||+|+++|+.+++.|   .+|.|||+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            68999999999999999988776   5799999853

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.97  E-value=0.00022  Score=65.04  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~G--i~v~lvEr~~~~   78 (712)
                      +|+|||||++|+.+|..|+++|  ++|+|||+++..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            7999999999999999999987  589999988753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.87  E-value=0.0002  Score=73.66  Aligned_cols=38  Identities=29%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~   80 (712)
                      ..+|+||||+|++|+.+|..|++. ++|+|||+.+.+..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~~~   62 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLPTA   62 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCGGG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCCcC
Confidence            458999999999999999999986 99999999975433

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.84  E-value=0.00087  Score=59.98  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             cCEEEE--CCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIV--GAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIV--GaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+  |||..|+.+|..|+++|.+|+|+|+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            456665  9999999999999999999999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.65  E-value=0.00061  Score=62.39  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      -+|+|||||++|+-+|..|+++|.+++|+++.+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            57999999999999999999999999998877754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0016  Score=52.73  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|+|.|.+|+++|.+|.++|.+|+++|.+..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            357999999999999999999999999999987654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.23  E-value=0.0013  Score=56.98  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +.|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4799999999999999999999999999999764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.038  Score=46.94  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+|||+|.+.+-.|++|++..-+|+|+-|++..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            468999999999999999999999999999988754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.13  E-value=0.0016  Score=59.51  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|.|||||..|+++|..|+++|++|.+++|.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999999999999999999999865

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0029  Score=56.70  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|+|||+|-.|.++|..|++.|++|+++.|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            5799999999999999999999999999999875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.02  Score=50.88  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCE
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKC   69 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v   69 (712)
                      .-+|+|||||.+|+-+|..|.+.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            358999999999999999999999754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.86  E-value=0.0021  Score=58.25  Aligned_cols=34  Identities=32%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|||||-+|..+|..|+++|++|+|++|...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4799999999999999999999999999999863

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.62  E-value=0.092  Score=44.70  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=32.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||||-+.+-.|++|++.--+|+||-|++.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            468999999999999999999999999999888764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.11  Score=43.98  Aligned_cols=36  Identities=14%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .-+|+|||||-+.+=.|++|++..-+|+|+-|++..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            368999999999999999999999999999888754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.08  E-value=0.0067  Score=52.29  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      +++|||+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999998864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.0072  Score=56.28  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||.|-+||.+|+.|++.|++|+.+|.++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            469999999999999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.81  E-value=0.0057  Score=58.16  Aligned_cols=38  Identities=13%  Similarity=0.133  Sum_probs=33.1

Q ss_pred             CCcEEEEccCCccCCCCCCcc-hhhHHHHHHHHHHHHHH
Q 005134          358 YNQIILAGDACHRFPPAGGFG-MNTGVQDAHNLAWKIAS  395 (712)
Q Consensus       358 ~gRV~LvGDAAH~~~P~gG~G-~n~gi~DA~~LawkLa~  395 (712)
                      .+||+++|||+|.+.|..++| +++|+.+|..|+..|..
T Consensus       306 ~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         306 VGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             BTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            489999999999999999998 47889999888877753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.47  E-value=0.017  Score=51.07  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      ..+.+|.|||+|-+|.++|+.|+..++ +++|+|.++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            457899999999999999999999997 7999997764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.29  E-value=0.018  Score=50.54  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      .+.+|.|||+|-+|.++|+.|+.+|+  +++|||++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            46799999999999999999999986  799999765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.11  E-value=0.027  Score=50.09  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ..+.+|.|||+|-+|.++|+.|...|+  +++|+|++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            345799999999999999999999998  799999874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.06  E-value=0.02  Score=52.47  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -+|.|||||..|...|..++++|++|+++|+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.02  E-value=0.021  Score=50.93  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||.|-.|.++|..|+++|++|++++|++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            469999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.021  Score=52.56  Aligned_cols=34  Identities=15%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|.|||||.-|...|..++++|++|+++|+.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            5899999999999999999999999999998763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.74  E-value=0.04  Score=48.26  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=32.9

Q ss_pred             CcccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           41 EAVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        41 ~~~~~VlIVG-aGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..--+|.||| .|.-|.++|..|.++|++|.++++...
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            3446899999 699999999999999999999998763

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.71  E-value=0.025  Score=50.39  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...+|+|+|||.+|+.++....+.|-.|.++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45899999999999999999999999999999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.69  E-value=0.028  Score=50.70  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ..+|+|+|||.+|+.+|....+.|-.|.++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            47999999999999999999999999999998875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.50  E-value=0.022  Score=50.84  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -.|+|+|+|++|++++..++..|.+|+++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            469999999999999999999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.50  E-value=0.026  Score=50.46  Aligned_cols=33  Identities=30%  Similarity=0.548  Sum_probs=30.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -.|+|+|+|++|+.++..++..|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999999999999999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.43  E-value=0.027  Score=50.45  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+|+|++|+.++..++..|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            5699999999999999999999999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.025  Score=50.73  Aligned_cols=33  Identities=30%  Similarity=0.596  Sum_probs=29.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            469999999999999999999999 688888664

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.31  E-value=0.039  Score=48.59  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~~   78 (712)
                      -+|+|||||-+|+=+|..|.|+|.+ |++++|++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            4799999999999999999999986 7789987654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.09  E-value=0.044  Score=45.46  Aligned_cols=36  Identities=28%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ...-+|+|||||.+|..-|..|.+.|.+++++....
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            445789999999999999999999999999997543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.99  E-value=0.032  Score=50.61  Aligned_cols=33  Identities=30%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||+|.-|.++|..|++.|.+|.|+-|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            579999999999999999999999999997643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.62  E-value=0.054  Score=47.50  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      +.+|.|||+|-+|.++|+.|.+.++ +.+|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999999999987 7888997653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.57  E-value=0.054  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      ++|.|||||-+|.++|+.|+..|+  ++.|+|..+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            479999999999999999999986  8999997764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.33  E-value=0.058  Score=47.17  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=31.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +...+|.|||+|-+|.++|+.|...|+  +++|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            445789999999999999999999987  699999765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.30  E-value=0.051  Score=47.18  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      -+|.|||+|-+|.++|+.|+..++ +++++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            379999999999999999999987 8899997653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.24  E-value=0.045  Score=47.74  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=29.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||| |-+|.++|+.|+.+|+  ++.|+|..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            46999996 9999999999999996  889998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.19  E-value=0.039  Score=49.99  Aligned_cols=33  Identities=33%  Similarity=0.558  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+|++|+.+...+...|. +|+++++++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            569999999999999999999998 688898754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.15  E-value=0.064  Score=47.43  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +.+.+|.|||+|-+|.++|+.|...|+  +++|+|++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            445689999999999999999999998  799999764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.14  E-value=0.041  Score=49.71  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=30.0

Q ss_pred             cCEEEE-CCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIV-GAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIV-GaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|| |+|-.|.++|..|+++|++|+|..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999 679999999999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.08  E-value=0.071  Score=47.92  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .-.|+|+|+|++|++++.+++..|. +|+++++++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3579999999999999999999997 688888764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.00  E-value=0.043  Score=50.34  Aligned_cols=32  Identities=28%  Similarity=0.543  Sum_probs=28.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|.|||.|-+||.+|..|+ .|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            46999999999999999997 599999999765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.04  Score=48.27  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE   73 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvE   73 (712)
                      ...-.|||||||.+|+.-|..|.+.|.+|+||.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            455789999999999999999999999999995

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.71  E-value=0.047  Score=49.91  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      .+|+|+|||--|.++|..|++.|.+|.|+.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            369999999999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.065  Score=47.72  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -.|+|+|+|++|+.++..+...|.+++++++.+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            5699999999999999999999999999987653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.33  E-value=0.1  Score=45.22  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~~   77 (712)
                      -+|.|||+|-+|.++|+.|..+|+  ++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999999999987  7999998775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.04  E-value=0.081  Score=45.82  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||+|-+|.++|+.|+.+|+  +++|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            479999999999999999999987  699999764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.11  Score=45.27  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .|+|+|.|..|..++-.|.++|++++|+|..+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            699999999999999999999999999998763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.83  E-value=0.1  Score=45.14  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      .+|.|||+|-+|.++|+.|..+|+  +++|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999998  789999664

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.70  E-value=0.088  Score=45.81  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +|.|||+|-+|.++|+.|..+|+  +++|+|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999999986  788898754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.38  E-value=0.1  Score=46.79  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~~~   77 (712)
                      -.|+|+|+|+.|++++..++..|.+ |++.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            4699999999999999999999985 666787653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.11  Score=44.94  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=29.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      ++|.|||+|-+|.++|+.|..+++  ++.|+|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            479999999999999999999886  788898664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.27  E-value=0.098  Score=46.27  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      -.|+|+|+|++|++++..+...|.+|+++++++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            579999999999999999999999999888654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.94  E-value=0.094  Score=45.50  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=27.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        45 ~VlIVGa-GpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      +|.|||| |-+|.++|+.|+.+|+  +.+++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6899996 9999999999999998  58888864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.89  E-value=0.15  Score=53.19  Aligned_cols=40  Identities=10%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 005134           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (712)
Q Consensus        41 ~~~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~~~   80 (712)
                      ..++||||+|-|..=..+|.+|++.|.+|+-+||+.....
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   43 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence            3579999999999999999999999999999999987643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.86  E-value=0.12  Score=46.45  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      -.|+|+|+|+.||.+...++..|. +|+++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            359999999999999999999996 7889998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.61  E-value=0.15  Score=41.62  Aligned_cols=36  Identities=19%  Similarity=-0.018  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+|||+|.+|+-.|..|++.+-+++++-+++..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            478999999999999999999998887777776543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.59  E-value=0.1  Score=47.71  Aligned_cols=34  Identities=35%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .-.|+|+|+||+|+.++..++..|. +|++++..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3589999999999999999988887 677777543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.67  E-value=0.14  Score=45.76  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+|++|+.+...++..|. +|+++++.+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            469999999999999999999997 577777764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.36  E-value=0.13  Score=45.26  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|-|||-|..|..+|..|.++|++|.+++|.+.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            3589999999999999999999999999998653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.14  E-value=0.26  Score=44.02  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      -+|-|||-|..|..+|..|.++|++|.+++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5789999999999999999999999999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.03  E-value=0.18  Score=45.04  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=27.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKN   75 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~l-vEr~   75 (712)
                      .-.|+|+|+|++|++++..++..|.++++ .+++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            35699999999999999999999997655 4543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.95  E-value=0.27  Score=43.90  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ++|-|||-|..|..+|..|.+.|++|.+++|.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999865

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.33  Score=39.81  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .++|.|+|||--|-.+|+...+.|+++.+++..+..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            368999999999999999999999999999988764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.27  Score=43.66  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      ..+|+|+|+|=++-+.+..|.+.|.++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4689999999999999999999999999998865

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.18  E-value=0.021  Score=54.09  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      ..+|+|||||.+|+-+|..|++.|.+|+|++|++..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            367999999999999999999999999999999764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.09  E-value=0.18  Score=47.82  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=30.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      .+.+|+|||+|-.|..+|..|++.|+ +++|+|-..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            45799999999999999999999999 788888554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.50  E-value=0.28  Score=43.30  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi--~v~lvEr~~   76 (712)
                      +|+|||.|..|.++|..|.+.|+  ++..+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999997  566678653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.39  E-value=0.39  Score=39.71  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=41.3

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCCCC-C---CceeecCHhHHHHHHh
Q 005134           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAFST-H---PQAHFINNRYALVFRK   97 (712)
Q Consensus        42 ~~~~VlIVGaGp-----------aGL~~A~~Lar~Gi~v~lvEr~~~~~~-~---~ra~~i~~rtmeilr~   97 (712)
                      ..-+|||+|+||           ++..++..|++.|++++++--+++.-. .   .--..+-|=+.|.+.+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~   73 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLE   73 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHH
Confidence            346899999997           788899999999999999999987622 1   2234555555555544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.35  E-value=0.3  Score=42.04  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHhCCC--CEEEEcCC
Q 005134           44 VPVLIVG-AGPVGLVLSILLTKLGI--KCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVG-aGpaGL~~A~~Lar~Gi--~v~lvEr~   75 (712)
                      ++|.||| +|-+|.++|+.|..+|+  +..|+|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            4799999 69999999999999987  68888853

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=0.41  Score=40.07  Aligned_cols=57  Identities=30%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCCC-CC---CceeecCHhHHHHHHhh
Q 005134           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAFS-TH---PQAHFINNRYALVFRKL   98 (712)
Q Consensus        42 ~~~~VlIVGaGp-----------aGL~~A~~Lar~Gi~v~lvEr~~~~~-~~---~ra~~i~~rtmeilr~l   98 (712)
                      ..-+|||+|+||           ++.-+...|++.|++++++.-++++- ..   .--.++-|=+.|.+.++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~I   77 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKI   77 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHH
Confidence            446899999998           78889999999999999999998862 11   12344555555555443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.74  E-value=2.2  Score=39.20  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--------------------CC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKL--------------------GI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~--------------------Gi-~v~lvEr~~~   77 (712)
                      .-+|+|||+|=++|=+|..|.|.                    |+ +|.|+-|+..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            36899999999999999999984                    65 6888887764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=85.18  E-value=0.41  Score=42.27  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      ..+|+|+|+|=++-+.+..|.+.|+ ++.|+.|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4689999999999999999999998 788988764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.09  E-value=0.35  Score=41.87  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      ++|-|||.|-.|..+|..|.++|++++++.+.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4689999999999999999999999999987654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.35  Score=41.68  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=26.0

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHh-CC--CCEEEEcCC
Q 005134           44 VPVLIVG-AGPVGLVLSILLTK-LG--IKCSVLEKN   75 (712)
Q Consensus        44 ~~VlIVG-aGpaGL~~A~~Lar-~G--i~v~lvEr~   75 (712)
                      ++|.||| +|-+|.++|+.|+. .+  -+..++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            4799999 59999999999864 34  479999854

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.92  E-value=0.4  Score=42.41  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      -.|+|+|+|+.|++++..++..|- +|+++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            459999999999999999999987 5777877653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.88  E-value=0.44  Score=45.76  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+.+|||+|| |-.|..++..|.++|++|+++-|.+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            3577999997 999999999999999999999887543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.63  E-value=0.37  Score=42.77  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=29.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      -.|+|+|+|.+|++++..++..|. +|++++.++.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            349999999999999999999986 7777777653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.60  E-value=0.33  Score=42.59  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        45 ~VlIVGaGpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +|-|||-|-.|..+|..|.++|++|.+++|.+
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            59999999999999999999999999999874

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.91  E-value=0.45  Score=45.33  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 005134           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (712)
Q Consensus        42 ~~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~~   78 (712)
                      .+.+|||.|| |-.|..++..|.+.|++|+++.|.+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3578999998 999999999999999999999998654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.23  E-value=0.52  Score=43.12  Aligned_cols=52  Identities=6%  Similarity=-0.056  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhcCceeeccCccccccccccccceEEeCcEEEEEEEcCCeEEEEEEeccCCceeeEEEEecEEEe
Q 005134          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (712)
Q Consensus       156 ~Le~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~v~~~~~~v~v~v~~~~~g~~~~~~i~ad~VVg  231 (712)
                      .+.+.|.+.+++.|+                   +|+++++|++|..++++..++.... +|    .+++||+||.
T Consensus       237 ~l~~~l~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~v~~v~~-~g----~~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGG-------------------TYMLDTPIDEVLYKKDTGKFEGVKT-KL----GTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTC-------------------EEECSCCCCEEEEETTTTEEEEEEE-TT----EEEECSCEEE
T ss_pred             HHHHHHHHHHHhcCC-------------------EEEeCCEeeEEEEECCCCEEEEEEc-CC----EEEECCEEEE
Confidence            355667777777776                   9999999999987654433332212 45    2799999985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.63  E-value=0.5  Score=41.74  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=27.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+|++|+.++..++..|. .++++++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            569999999999999999988886 555567653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.32  E-value=0.35  Score=45.96  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 005134           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (712)
Q Consensus        43 ~~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~   76 (712)
                      +++|+|.|| |-.|..++..|..+|++|+.++|+.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            367999998 9999999999999999999999875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.03  E-value=0.45  Score=41.82  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=27.7

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCC-CEEEEcCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGI-KCSVLEKNK   76 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi-~v~lvEr~~   76 (712)
                      -.|+|+|+ |++|+.++..++..|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999995 9999999999998885 777788664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.56  E-value=0.7  Score=40.37  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=30.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 005134           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (712)
Q Consensus        42 ~~~~VlIVGaGpaGL~~A~~Lar~Gi~-v~lvEr~   75 (712)
                      ....|+|||+|-.|-..|..|..+|++ ++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            457899999999999999999999995 7787765

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.18  E-value=6.5  Score=33.69  Aligned_cols=33  Identities=9%  Similarity=0.042  Sum_probs=26.2

Q ss_pred             CCCCCCCcceeecCCCCcceeeeCCCCCcceEEEEEc
Q 005134          553 NPGSRLPHMNVRVLSTEIISTLDLVSGDKVEFLLIIA  589 (712)
Q Consensus       553 ~pG~R~PH~~l~~~~~~~~St~Dl~~~~~~~f~Ll~~  589 (712)
                      .+|..+|.+-|...+++.+|+-|+-|.    .++|.+
T Consensus        17 ~vG~~aPdF~L~~~~g~~vsLsd~~gk----~~vl~f   49 (163)
T d1psqa_          17 QVGDKALDFSLTTTDLSKKSLADFDGK----KKVLSV   49 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTS----EEEEEE
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCc----EEEEEe
Confidence            589999999998767888999998664    555544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.56  Score=42.57  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 005134           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (712)
Q Consensus        44 ~~VlIVGa-GpaGL~~A~~Lar~Gi~v~lvEr~~~   77 (712)
                      .+|+|.|| |..|..++..|.++|++|+++-|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            45999996 99999999999999999999988764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=0.7  Score=41.25  Aligned_cols=35  Identities=11%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 005134           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (712)
Q Consensus        43 ~~~VlIVGaGpaGL~~A~~Lar~Gi-~v~lvEr~~~   77 (712)
                      ..+|+|+|+|-+|-+.+..|.++|. +++|+.|.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4689999999999999999999999 6778888754