Citrus Sinensis ID: 005137
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | 2.2.26 [Sep-21-2011] | |||||||
| Q96QE3 | 1844 | ATPase family AAA domain- | yes | no | 0.168 | 0.065 | 0.366 | 4e-14 | |
| Q4QY64 | 1826 | ATPase family AAA domain- | yes | no | 0.151 | 0.059 | 0.370 | 4e-13 | |
| O43086 | 920 | Telomere length regulatio | yes | no | 0.143 | 0.110 | 0.285 | 6e-07 | |
| P38630 | 861 | Replication factor C subu | yes | no | 0.181 | 0.149 | 0.286 | 6e-07 | |
| Q12050 | 791 | Telomere length regulatio | no | no | 0.136 | 0.122 | 0.307 | 2e-06 | |
| Q8TZC5 | 510 | Replication factor C larg | yes | no | 0.161 | 0.225 | 0.295 | 2e-05 | |
| Q9UXF6 | 405 | Replication factor C larg | yes | no | 0.150 | 0.264 | 0.353 | 0.0001 | |
| C3NHF4 | 405 | Replication factor C larg | yes | no | 0.153 | 0.269 | 0.342 | 0.0002 | |
| C3NE95 | 405 | Replication factor C larg | yes | no | 0.153 | 0.269 | 0.342 | 0.0002 | |
| C3MQ13 | 405 | Replication factor C larg | yes | no | 0.153 | 0.269 | 0.342 | 0.0002 |
| >sp|Q96QE3|ATAD5_HUMAN ATPase family AAA domain-containing protein 5 OS=Homo sapiens GN=ATAD5 PE=1 SV=4 | Back alignment and function desciption |
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Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 34 GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLD 93
G S + LIL E+VDV F ED GF+ I+ K PVILT++ +L
Sbjct: 1289 GAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKRPVILTTSDPTFSLMFDGC 1348
Query: 94 RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153
E+ F+ P ++ S+LQMIC E V L+ + DIRK+I++LQFW ++ G
Sbjct: 1349 FEEIKFSTPSLLNVASYLQMICLTENFRTDVKDFVTLLTANTCDIRKSILYLQFWIRSGG 1408
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Involved in DNA damage response. Involved in a RAD9A-related damage checkpoint, a pathway that is important in determining whether DNA damage is compatible with cell survival or whether it requires cell elimination by apoptosis. Modulates the RAD9A interaction with BCL2 and thereby induces DNA damages-induced apoptosis. Homo sapiens (taxid: 9606) |
| >sp|Q4QY64|ATAD5_MOUSE ATPase family AAA domain-containing protein 5 OS=Mus musculus GN=Atad5 PE=1 SV=1 | Back alignment and function description |
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| >sp|O43086|ELG1_SCHPO Telomere length regulation protein elg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elg1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P38630|RFC1_YEAST Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q12050|ELG1_YEAST Telomere length regulation protein ELG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELG1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8TZC5|RFCL_METKA Replication factor C large subunit OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rfcL PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9UXF6|RFCL_SULSO Replication factor C large subunit OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcL PE=1 SV=1 | Back alignment and function description |
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| >sp|C3NHF4|RFCL_SULIN Replication factor C large subunit OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rfcL PE=3 SV=1 | Back alignment and function description |
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| >sp|C3NE95|RFCL_SULIY Replication factor C large subunit OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rfcL PE=3 SV=1 | Back alignment and function description |
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| >sp|C3MQ13|RFCL_SULIL Replication factor C large subunit OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rfcL PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| 147794989 | 1170 | hypothetical protein VITISV_006652 [Viti | 0.974 | 0.593 | 0.469 | 1e-160 | |
| 302141826 | 919 | unnamed protein product [Vitis vinifera] | 0.935 | 0.724 | 0.458 | 1e-151 | |
| 255545476 | 1247 | hypothetical protein RCOM_1032100 [Ricin | 0.900 | 0.514 | 0.438 | 1e-138 | |
| 356507654 | 1199 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.557 | 0.408 | 1e-117 | |
| 357461523 | 1283 | ATPase family AAA domain-containing prot | 0.924 | 0.512 | 0.400 | 1e-115 | |
| 224066839 | 1068 | predicted protein [Populus trichocarpa] | 0.733 | 0.488 | 0.457 | 1e-111 | |
| 356518537 | 1197 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.554 | 0.391 | 1e-109 | |
| 357438631 | 1178 | Replication factor C large subunit [Medi | 0.935 | 0.565 | 0.388 | 1e-105 | |
| 449449890 | 1209 | PREDICTED: uncharacterized protein LOC10 | 0.897 | 0.528 | 0.385 | 1e-102 | |
| 297789753 | 960 | nucleoside-triphosphatase/ nucleotide bi | 0.905 | 0.671 | 0.364 | 5e-93 |
| >gi|147794989|emb|CAN67425.1| hypothetical protein VITISV_006652 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 344/732 (46%), Positives = 449/732 (61%), Gaps = 38/732 (5%)
Query: 1 MKSSYTVSLCEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVK-------------PLI 47
MKS + A Q + +V+E+I D+E+SH +G + H+ LI
Sbjct: 404 MKSFPALPNGTATQEFESKVIELIPSSDEEDSHDAIGTPEKHIHKKNRTACDRGETITLI 463
Query: 48 LIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDL 107
L EDVD+ FPEDRG IA IQQ+AE AK P+ILTSNSNN LPD+LDRLEV FT+P PK+L
Sbjct: 464 LFEDVDITFPEDRGLIAAIQQLAETAKRPIILTSNSNNPVLPDNLDRLEVCFTLPSPKEL 523
Query: 108 LSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGKDKKLQKLYVPE 167
L H M+CAAEK +Q L+ + IE C+ DIRKT+MHLQFWCQ K Y +D+K K+Y P
Sbjct: 524 LCHAYMVCAAEKTNIQPWLIERFIEYCQGDIRKTLMHLQFWCQGKRYRQDRKAHKIYGPL 583
Query: 168 LFDPDAGHHMLPKKIPWGFPSQLSELVVKEIMKSLSLMEENSTLRELSEGEG--HDEMPS 225
FD +AGH +LPK IPW FPSQLSELV KEI KSLS ME +S+ E+ + EG + EM +
Sbjct: 584 SFDLEAGHQILPKIIPWDFPSQLSELVEKEIAKSLSKMEGDSSSMEVIKEEGLHNKEMQN 643
Query: 226 NQDMHNNPADSVEAKKEEMLNMNSSVHTNNELEDPLGNECEISNLPHTPVSFSRKNNRRK 285
+MH+ DS+EAKKE M + N SV N CE+SN +P +F+R+N RRK
Sbjct: 644 GLEMHDYEKDSIEAKKEAMFSRNCSVLDGNGFAAEFDIGCELSNSSGSPATFTRRNVRRK 703
Query: 286 FKVVASSDSEDELIRNKSPVAERDI----NSKFLSENHSRFPSHFSNAQNCKNPPIDKLH 341
+ SS+SEDE+ + PV ++ +S + S+FP H + NC NP D+L
Sbjct: 704 LDTILSSNSEDEVFSDSFPVVSHNLLDGTDSGVFLDIDSKFP-HCQESNNCLNPFTDQLL 762
Query: 342 YPLKEKLEGSHYLCSEVANDLQI-GTYVSVDISCVPESSFVPETDIDNGAELLSGKECSG 400
+ + K E + Y CSE AN L I T S DIS VPESSFVPET++ +G ELLS G
Sbjct: 763 HSEEGKFEENRYQCSETANSLCIYDTCKSFDISRVPESSFVPETEMSDGTELLSVALSCG 822
Query: 401 CVAEAVE-VSVANEFDLNLPPVGADNNSMLEMHRNPDMLEKFCAVIAESSHMEEVEDSQN 459
VA+ E VS+ N+ NL V A N P + + +I S EEV DSQN
Sbjct: 823 RVADIAETVSICNDLTQNLLQVEAKNPE----KSVPGLSQNLETMINGDSVNEEVGDSQN 878
Query: 460 EHVETIPRVYQLMDECSRMDFKRRSK-LEELRSQEAIDLVRESWKKLRDGNTDLRQYATL 518
EHVE++ R Y +MDECSRM F SK LE+ RS + V+E+W+KLR +TDLR+YA L
Sbjct: 879 EHVESVTREYPVMDECSRMAFTIGSKSLEDPRSWMVTNSVQETWRKLRGCHTDLRRYAIL 938
Query: 519 EKPNAFQIIKLTHGMCDLISEADLLLSKCQ--SPDFLELPMFP-HEDLDACAWRDEQLQL 575
E+ +A QI++LT+ M +LISEAD L C D L+L P E+ A +W DEQLQ+
Sbjct: 939 EQRDASQIVELTYKMSNLISEADQLRYNCHPLDSDSLDLSAVPCGEESHAFSWYDEQLQM 998
Query: 576 TSSIVQHGFSIYAKDISNKGSNMGSNTKTDLSWEILA-CTNNMKSGKLCEQDQETTGIS- 633
S+I QHGF Y+K I+ GS +GS+ DL+ E+LA TN M GKL + S
Sbjct: 999 ASTIAQHGFCFYSKYIAAAGSILGSDYMVDLASEMLASTTNTMALGKLTRPEMRMNWTSR 1058
Query: 634 ------LTARNILLEREMKSGLFNRVKSLVPSRSYLALKGYAFHEYLSSLGCILRSESFR 687
+ +I L E + L N V+S+VPS+SYL +KG+AFHEYLSSL I RSE+ R
Sbjct: 1059 KGVQMEVPKSDISLRSETEPCLCNIVQSVVPSKSYLGVKGHAFHEYLSSLSQISRSEASR 1118
Query: 688 LTESSNNTKKRR 699
L+E+ N K+RR
Sbjct: 1119 LSENINQNKRRR 1130
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141826|emb|CBI19029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255545476|ref|XP_002513798.1| hypothetical protein RCOM_1032100 [Ricinus communis] gi|223546884|gb|EEF48381.1| hypothetical protein RCOM_1032100 [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356507654|ref|XP_003522579.1| PREDICTED: uncharacterized protein LOC100784209 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357461523|ref|XP_003601043.1| ATPase family AAA domain-containing protein [Medicago truncatula] gi|355490091|gb|AES71294.1| ATPase family AAA domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224066839|ref|XP_002302240.1| predicted protein [Populus trichocarpa] gi|222843966|gb|EEE81513.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356518537|ref|XP_003527935.1| PREDICTED: uncharacterized protein LOC100784968 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357438631|ref|XP_003589591.1| Replication factor C large subunit [Medicago truncatula] gi|355478639|gb|AES59842.1| Replication factor C large subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449449890|ref|XP_004142697.1| PREDICTED: uncharacterized protein LOC101216488 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297789753|ref|XP_002862810.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297308545|gb|EFH39068.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| TAIR|locus:2204705 | 1151 | AT1G77620 [Arabidopsis thalian | 0.925 | 0.572 | 0.358 | 4.3e-94 | |
| MGI|MGI:2442925 | 1826 | Atad5 "ATPase family, AAA doma | 0.172 | 0.067 | 0.362 | 5e-12 | |
| UNIPROTKB|J9NTZ2 | 1836 | ATAD5 "Uncharacterized protein | 0.179 | 0.069 | 0.359 | 2.2e-10 | |
| UNIPROTKB|E2RCC4 | 1883 | ATAD5 "Uncharacterized protein | 0.179 | 0.067 | 0.359 | 2.4e-10 | |
| UNIPROTKB|F1NJA2 | 1760 | F1NJA2 "Uncharacterized protei | 0.161 | 0.065 | 0.387 | 6.5e-10 | |
| UNIPROTKB|E1BCE1 | 1847 | ATAD5 "Uncharacterized protein | 0.151 | 0.058 | 0.388 | 1e-09 | |
| UNIPROTKB|Q96QE3 | 1844 | ATAD5 "ATPase family AAA domai | 0.183 | 0.071 | 0.351 | 1.3e-09 | |
| ASPGD|ASPL0000063791 | 1127 | AN10917 [Emericella nidulans ( | 0.179 | 0.113 | 0.323 | 1.6e-09 | |
| ZFIN|ZDB-GENE-030131-338 | 1060 | atad5b "ATPase family, AAA dom | 0.148 | 0.1 | 0.369 | 2.1e-08 | |
| ZFIN|ZDB-GENE-070912-20 | 1778 | atad5a "ATPase family, AAA dom | 0.151 | 0.060 | 0.333 | 6.9e-08 |
| TAIR|locus:2204705 AT1G77620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 918 (328.2 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 252/702 (35%), Positives = 374/702 (53%)
Query: 10 CEAAQHADD--EVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQ 67
C +D EV+ V+HI +D G ++KPLIL EDVD+ F EDRG ++ IQ
Sbjct: 451 CTDGNGVEDVVEVMPVLHIQND----GA------NLKPLILFEDVDICFAEDRGLVSAIQ 500
Query: 68 QIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLL 127
QIA KAKGPV+LT+N N LPD+L+R+E+ F++P ++L +HL ++CAAE+V++ L
Sbjct: 501 QIAVKAKGPVVLTANDKNHGLPDNLERIEIYFSLPSKEELFNHLSLVCAAEEVKVNHGSL 560
Query: 128 VQLIESCRADIRKTIMHLQFWCQNKGYGKDKKLQKLYVPELFDPDAGHHMLPKKIPWGFP 187
++ C DIRK IM LQFW Q+K + +K++ +LFD +AGH +LPK I FP
Sbjct: 561 EEMTTFCGGDIRKAIMQLQFWFQSKPK-RARKVKNTGNQDLFDHEAGHLLLPKIIARDFP 619
Query: 188 SQLSELVVKEIMKSLSLMEE-NSTLRELSEGEGHDEMPSNQDMHNNPADSVEAKKEEMLN 246
SQLS+LV EI K LS+ EE N+T+ E +++M + +S++AKK M
Sbjct: 620 SQLSQLVENEIAKVLSMEEERNNTVEVFVEEVENEKMLNRLWRRGTGKNSIQAKKAAMFR 679
Query: 247 MNSSVHTNNELEDPLGNECEISNLPHTPVSFSRKNNRRKFKVVASSDSEDELIRN-KSPV 305
N++ +ELED L CE+SN + P+SFS+ N RRK VV SSDSEDE + + + +
Sbjct: 680 QNTTFEDYDELEDVLRIPCELSNTSYQPLSFSQPNRRRKLNVVMSSDSEDEPLTDIRVSI 739
Query: 306 AERDINSKFLSENHSRFPSHFSNAQNCKNPPIDKLHYPLKEKLEGSHYLCSEVANDLQIG 365
++ + + + + S++ + Q NP D E LE + Y E + I
Sbjct: 740 SQHQKDDRLIFQEDGTLSSYWPDMQKETNPLADPSR---AEILEAACYQY-ETSKFSYIN 795
Query: 366 TYV-SVDISCVPESSFVPETDIDNGAELLSGKECSGCXXXXXXXXXXXXFDL-NLPPVGA 423
SV+ISCVPESS+VPET +D AEL S + S C D+ PP
Sbjct: 796 EVSQSVEISCVPESSYVPETLMDGEAEL-SPRAVS-CGHFDGRVEVSMNEDVVQTPP--- 850
Query: 424 DNNSMLEMHRNPDMLEKFCAVIAESSHMEEVEDSQNEHVETIPRVYQLMDECSRMDFKRR 483
++ + D L+ +IAESS +ED E+V ++ Q+ DECSRMDF +
Sbjct: 851 SKEIYIDRFQIFDCLKNTSEIIAESSDATVMEDCFKEYVGAAQKMQQVSDECSRMDFGKT 910
Query: 484 SKL-EELRSQEAIDLVRESWKKLRDGNTDLRQYATLEKPNAFQIIKLTHGMCDLISEADL 542
K E+ + + V+ESW+K+ D + Y E A Q++ LTH + +LISEADL
Sbjct: 911 YKTAEKPKLDTSRSAVQESWEKICSNLADFKPYLDSEPVEAPQVLDLTHQITNLISEADL 970
Query: 543 LLSKCQSPDFLELPMFPHEDLDACAWRDEQLQLTSSIVQHGFSIYAKDISNKGSNMGSNT 602
S+C + LE M DLD ++TS++ Q F I+ GS + +++
Sbjct: 971 THSRCLNLGALEPMMNTSGDLDTSGLSQMLEEMTSTVSQQEFCFLTNQITTTGS-VPTSS 1029
Query: 603 KTDLSWEILACTNNMKSGKLCEQDQETT-GISLTARNILLEREMKSGLFNRV----KSLV 657
T + L QD ++ G L + +LE +K R+ +S+V
Sbjct: 1030 ATMVPERGLTVDE-------ARQDYTSSNGSCLDMKPDILEDLLKCRRMTRLSGVLESVV 1082
Query: 658 PSRSYLALKGYAFHEYLSSLGCILRSESFRLTESSNNTKKRR 699
P RS LKG AFHEY S +G I R++ L+ + ++RR
Sbjct: 1083 PLRS---LKGRAFHEYASFIGQISRADPSNLSGALEKGRRRR 1121
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| MGI|MGI:2442925 Atad5 "ATPase family, AAA domain containing 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9NTZ2 ATAD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RCC4 ATAD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NJA2 F1NJA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BCE1 ATAD5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96QE3 ATAD5 "ATPase family AAA domain-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000063791 AN10917 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-338 atad5b "ATPase family, AAA domain containing 5b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070912-20 atad5a "ATPase family, AAA domain containing 5a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 712 | |||
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 2e-05 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 46 LILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNS----NNITLPDSLDRLEVSFT 100
LIL+++VD EDRG I ++ +KAK P+ILT+N + L ++ L + F
Sbjct: 101 LILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNAC--LMIEFK 158
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ ++ L+ IC E +E L ++ E D+R I LQ
Sbjct: 159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204
|
Length = 482 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 99.96 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.88 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.77 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.77 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.7 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.7 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.62 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.43 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.43 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.34 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.34 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 99.31 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.26 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.26 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.25 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.24 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.21 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.19 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.18 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.18 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.17 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.17 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.17 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.17 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.16 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.16 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.15 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.14 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.14 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.12 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.11 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.09 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.06 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.05 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.04 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 99.02 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 98.96 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 98.94 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 98.93 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 98.91 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.91 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 98.91 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 98.85 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 98.85 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 98.85 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 98.84 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 98.81 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 98.8 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 98.79 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 98.69 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 98.59 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 98.5 | |
| PRK08727 | 233 | hypothetical protein; Validated | 98.45 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 98.36 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 98.34 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.34 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 98.24 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 98.24 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 98.21 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.19 | |
| PRK06620 | 214 | hypothetical protein; Validated | 98.17 | |
| PRK09087 | 226 | hypothetical protein; Validated | 98.17 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 98.14 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.14 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 98.13 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 98.12 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 97.95 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.9 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 97.89 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 97.82 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 97.78 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 97.75 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 97.74 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 97.69 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 97.68 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 97.68 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 97.65 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.61 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 97.59 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.58 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 97.57 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 97.48 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 97.47 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 97.41 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 97.41 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 97.34 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 97.28 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 97.26 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 97.12 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.11 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 97.1 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 97.1 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 97.05 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 97.01 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 96.94 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 96.94 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.88 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 96.86 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 96.86 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 96.83 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 96.82 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 96.75 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 96.6 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.56 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 96.52 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 96.51 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 96.49 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 96.49 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 96.47 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 96.41 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 96.3 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 96.21 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 96.16 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 96.15 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 95.98 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 95.97 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 95.78 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 95.69 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 95.66 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 95.65 | |
| PRK05629 | 318 | hypothetical protein; Validated | 95.6 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 95.42 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 95.23 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 95.08 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 94.93 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 94.68 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 94.37 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 94.09 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 94.04 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 93.56 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.31 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 93.06 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 93.02 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 92.94 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 92.87 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 92.76 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 92.75 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 92.4 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 92.29 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 91.92 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 91.68 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 91.35 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 91.06 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 91.04 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 90.99 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 90.75 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 90.24 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 90.05 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 89.93 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 89.42 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 89.17 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 88.72 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 88.16 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 87.93 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 87.59 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 87.37 | |
| PRK13695 | 174 | putative NTPase; Provisional | 87.11 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 87.06 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 86.55 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 86.28 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 86.18 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 85.56 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 85.48 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 85.2 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 85.1 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 84.84 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 84.48 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 84.23 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 83.69 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 83.43 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 82.97 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 81.78 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 81.7 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 80.91 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 80.26 |
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=291.40 Aligned_cols=453 Identities=18% Similarity=0.144 Sum_probs=328.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc------------cccccccC--------CCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN------------SHGVMGKS--------DNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r------------n~~v~gsl--------~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
-+.++|+++||+|+|.||+|.|+. ++.+.+.. ......||||||||+||.+|||+|++|.
T Consensus 373 ~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~ 452 (871)
T KOG1968|consen 373 AAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLS 452 (871)
T ss_pred hHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHH
Confidence 456899999999999999998853 24443333 0123569999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 68 QIAEKAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 68 ~LiekTKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
.+|+++++||||||||++.+..+.+.+ +.|+|++|....+..||+.||.+|+++|+++.++.+++.++||||++||+|
T Consensus 453 ~l~~ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~l 532 (871)
T KOG1968|consen 453 SLCKKSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQL 532 (871)
T ss_pred HHHHhccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHH
Confidence 999999999999999999888888888 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-------CCcccccccccCCCCCCcccccccCCCccCCCCCCch------hHHHHHHHHhhhhhhhcccccc
Q 005137 146 QFWCQNKG-------YGKDKKLQKLYVPELFDPDAGHHMLPKKIPWGFPSQL------SELVVKEIMKSLSLMEENSTLR 212 (712)
Q Consensus 146 Qf~s~s~~-------~~~~k~~~k~~~~~pfD~i~g~~l~p~i~p~~fp~~L------~eL~~~ei~~si~~~een~~~~ 212 (712)
|||+.... ...-+.|.+....++|| ++...+.+.- .+.+. .++++.++
T Consensus 533 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~L~~~~----~~s~~~~~~~k~~~~~ed~-------------- 593 (871)
T KOG1968|consen 533 QFWSLSKPAELPKKKGTPIKTSKKNITVKDFD-AAEGLLDISR----VASEETSNQSKAELYFEDY-------------- 593 (871)
T ss_pred hhhhccchhhhccccCccccccccccccchhH-HHhhhccHhh----hhhhhhhccchHHHhcccc--------------
Confidence 99977632 23334467888888888 5544444110 11111 33333333
Q ss_pred ccccccCCCCCCCCCCCCCCCCcchHHHHHHhhccCCccCCCccccccccCccccCCCCCCCccccccccccccceecCC
Q 005137 213 ELSEGEGHDEMPSNQDMHNNPADSVEAKKEEMLNMNSSVHTNNELEDPLGNECEISNLPHTPVSFSRKNNRRKFKVVASS 292 (712)
Q Consensus 213 e~~e~l~~~~~~n~l~~~~~~~d~~~~~k~~ml~~~~s~~~~~e~~~~~~~~~e~~~~~~~p~~~~~~~~r~k~~~v~~s 292 (712)
...++.+++|++....... - .+..++++.+.+.|.++.....|..+.+...+.++.++...
T Consensus 594 ---~~~p~~v~~n~~~~~~~~~----------~------~~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~ 654 (871)
T KOG1968|consen 594 ---SISPLKVQENYLQVLPRSM----------K------QILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAV 654 (871)
T ss_pred ---ccchhhcchhhhcccchhh----------h------hhHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhh
Confidence 3344445555543332221 1 46678888888888899999999999999998999999888
Q ss_pred CchhhhhhCCCcccccccccccccccCCCCCccccc-ccCCCCCCCcccCCchhhhccccccccccccccceee-eeeee
Q 005137 293 DSEDELIRNKSPVAERDINSKFLSENHSRFPSHFSN-AQNCKNPPIDKLHYPLKEKLEGSHYLCSEVANDLQIG-TYVSV 370 (712)
Q Consensus 293 ~s~d~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~~i~-t~~s~ 370 (712)
+|.++++. .+.+|... .-.||. |.. +-.|. .... .+. --.+.
T Consensus 655 ~s~~~p~~---~~~~~~~~-------~i~f~~-~~~~~sk~~----------~~~~---------------~l~el~~h~ 698 (871)
T KOG1968|consen 655 DSKVLPAS---KVGGHLLF-------RLGFPQ-WLGENSKSG----------KLKR---------------FLQELLPHT 698 (871)
T ss_pred hhhhcchh---hhhhcccc-------cccccc-ccCcccccc----------chhH---------------HHHHhchhh
Confidence 88887766 45555422 222333 322 22222 1111 112 33455
Q ss_pred ccccccCCcccccccccCCcccccccccccccccceeeeeecccccCCCCcccCcchhhccCCCChhhHHHHHHHhccCC
Q 005137 371 DISCVPESSFVPETDIDNGAELLSGKECSGCVAEAVEVSVANEFDLNLPPVGADNNSMLEMHRNPDMLEKFCAVIAESSH 450 (712)
Q Consensus 371 ~~scvpess~v~et~~~~~~e~~~~~vs~g~~~~~~~vs~~n~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~s~ 450 (712)
.+.+.|...++++.-..-..++.......++..+ .+++.. .+.......|-+..+-|.|+....
T Consensus 699 ~~~~s~~~~~~~~~y~~i~~~~~~~~~~~~~~d~-------------~p~~i~---~~vdy~~~~ed~~~i~Ei~~~~~~ 762 (871)
T KOG1968|consen 699 RLKQSANKARVRESYNPISRQFSPVPLALQSKDG-------------KPSAIE---SMVDYDLINEDLDGISEIIAAPGE 762 (871)
T ss_pred hhhhccchhhhhhhhhhhhhhccCCccccccCCC-------------CchhHH---hhhhhhhhhhhhhhHHHHhhcccc
Confidence 6788999999999999888899888888888742 122111 123335666777788888888777
Q ss_pred chhhcccccchhcccccccccccccccccccccchh-hccchhHHHHHHHHHHHHHhccccccccchhhcCCChhhHHHh
Q 005137 451 MEEVEDSQNEHVETIPRVYQLMDECSRMDFKRRSKL-EELRSQEAIDLVRESWKKLRDGNTDLRQYATLEKPNAFQIIKL 529 (712)
Q Consensus 451 ~~~~~d~~~e~~~~~~~~~~~mDecSr~df~~~~~~-~~~~~~~~~~~Vq~~W~klr~~~~dl~~~~~~e~~~a~~~~~l 529 (712)
..+..+.. +......-+.++-++|.++.|....+- .+.....-...++..|.+...-.++.. ..++-+.+...+++
T Consensus 763 ~~~~~~~i-~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~ 839 (871)
T KOG1968|consen 763 AKVPNKKI-EGTVKAVFTRTYKKLTEELRFFGQCKIRWKNAELSSAKREDLELGKGAEHLSLSG--DSSEELEADHNLSL 839 (871)
T ss_pred ccchhhhh-ccccccccccchhhhHhhccccchheeeccCccccccccchhhcccchhhccccc--cchhhhhhhhhcch
Confidence 66666655 665566666677799999999999988 444444677888999999997655555 34566799999999
Q ss_pred hhccccccchhhhhhhhcCCCCCCCCC
Q 005137 530 THGMCDLISEADLLLSKCQSPDFLELP 556 (712)
Q Consensus 530 a~~~snlISEadl~~~~c~~~d~~~~~ 556 (712)
++.+...++. .+.+|-+.-...+.
T Consensus 840 ~~~i~~~~~~---t~~k~~~~~~k~~~ 863 (871)
T KOG1968|consen 840 DKLIKVELTT---TKRKALNHWSKGTE 863 (871)
T ss_pred hheeeecccc---ccccccccCCCCcc
Confidence 9999999988 66666655444433
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 712 | ||||
| 1sxj_A | 516 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 5e-08 |
| >pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 516 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 17/193 (8%)
Query: 31 NSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPD 90
H ++ N +I++++VD DRG + + Q K P+IL N N+
Sbjct: 136 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR 195
Query: 91 SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148
DR L++ F P + S L I EK +L +++ +LI++ R DIR+ I L
Sbjct: 196 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255
Query: 149 CQNKG-------YGKDKKLQKLYVPELFDPDAGHHMLPKKIPWGFPSQ------LSELVV 195
K +K + F D H ML +I S+ L
Sbjct: 256 STTTKTINHENINEISKAWEKNIALKPF--DIAHKMLDGQIYSDIGSRNFTLNDKIALYF 313
Query: 196 KEIMKSLSLMEEN 208
+ + +++EN
Sbjct: 314 DDFDFTPLMIQEN 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.71 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.37 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.13 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.11 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.07 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.05 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.03 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 98.97 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 98.91 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 98.78 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.76 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 98.7 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 98.66 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 98.64 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 98.61 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 98.57 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 98.54 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 98.46 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 98.46 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 98.32 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.25 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 98.2 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 98.2 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 98.14 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.08 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.96 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.95 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 97.93 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.91 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.91 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.74 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.72 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 97.69 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.63 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.61 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 97.58 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.57 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 97.51 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 97.27 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.25 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 97.24 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.13 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 97.12 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 97.06 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 96.97 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.95 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.94 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.9 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.84 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 96.72 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.68 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.59 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.56 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 96.55 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 96.54 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.53 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.53 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.41 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 96.19 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.16 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.03 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.9 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.71 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.6 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.55 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.21 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.85 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 94.5 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 94.34 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 94.13 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 93.51 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 92.91 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 92.41 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 92.17 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 91.03 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 90.37 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 89.94 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 89.84 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 88.85 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 87.96 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 87.65 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 87.45 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 86.61 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 85.61 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 85.16 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 84.23 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 83.61 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 83.53 |
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=180.16 Aligned_cols=202 Identities=22% Similarity=0.212 Sum_probs=150.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------c-----ccccccC--------CCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------S-----HGVMGKS--------DNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n-----~~v~gsl--------~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
.+.++|+++|+.++|+|+++.+.. . ..+.+.+ ...++.||||||||.|+.++++++.+|.
T Consensus 93 la~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~ 172 (516)
T 1sxj_A 93 AAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLA 172 (516)
T ss_dssp HHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHH
Confidence 456899999999999999996532 0 0011111 1135789999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCC-CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 68 QIAEKAKGPVILTSNSNNI-TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 68 ~LiekTKrPIILTCND~n~-~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
++++..++|||+|||+... .++.+..+ ..|+|++|+.+++..+|..+|.+||+.+++++++.|+..++||+|+++|.|
T Consensus 173 ~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 173 QFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999763 34444444 789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccc-------ccccccCCCCCCcccccccCCCccCCCC--CCch---hHHHHHHHHhhhhhhhcccc
Q 005137 146 QFWCQNKGYGKDK-------KLQKLYVPELFDPDAGHHMLPKKIPWGF--PSQL---SELVVKEIMKSLSLMEENST 210 (712)
Q Consensus 146 Qf~s~s~~~~~~k-------~~~k~~~~~pfD~i~g~~l~p~i~p~~f--p~~L---~eL~~~ei~~si~~~een~~ 210 (712)
|+++.+++..+.. .|++.....+|+ ++++.+.++.+...- ...+ .++++.+....+..++|||.
T Consensus 253 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eNy~ 328 (516)
T 1sxj_A 253 STISTTTKTINHENINEISKAWEKNIALKPFD-IAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYL 328 (516)
T ss_dssp THHHHHSSCCCTTHHHHHHHHHHTTTTSHHHH-HHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHSS
T ss_pred HHHHhcCCCCchHHHHHHHHhhccCCCCCHHH-HHHHHhcCCccccccccCCCHHHhhhhhccCHHHHHHHHHHHhh
Confidence 9998866532222 266777778888 666766555432110 1122 33444444555556666554
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.74 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.69 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.58 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.57 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.56 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.27 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.2 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.11 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.35 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.62 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 97.46 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 97.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.12 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.97 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.73 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.58 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.88 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.29 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.26 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.05 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 86.78 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.84 |
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=9.4e-18 Score=161.06 Aligned_cols=147 Identities=24% Similarity=0.317 Sum_probs=123.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------ccccc-----c--------cCCCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGVM-----G--------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~v~-----g--------sl~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
.+.++|+++|++++++|+++.++. ..... . .....+..+|++||+|.++..+++++..+.
T Consensus 68 ~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~ 147 (253)
T d1sxja2 68 AAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLA 147 (253)
T ss_dssp HHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHH
T ss_pred HHHHHHHHHHhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHh
Confidence 467899999999999999996632 00000 0 001235679999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCC-Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 68 QIAEKAKGPVILTSNSNNIT-LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 68 ~LiekTKrPIILTCND~n~~-Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
++.....+|||+|||+.+.. +..++.+ ..|+|.+|+..++..+|+.||.+||+.++++++++|+..++||||++||.|
T Consensus 148 ~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L 227 (253)
T d1sxja2 148 QFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 227 (253)
T ss_dssp HHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999997653 4444455 789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC
Q 005137 146 QFWCQNKGY 154 (712)
Q Consensus 146 Qf~s~s~~~ 154 (712)
|+++...+.
T Consensus 228 ~~~~~~~~~ 236 (253)
T d1sxja2 228 STISTTTKT 236 (253)
T ss_dssp THHHHHSSC
T ss_pred HHHHHcCCC
Confidence 999987654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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