Citrus Sinensis ID: 005151

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGLEI
cccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEcccHHHHHHcccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHcccccccEEccccccccEEEEEEEEEEEEEccccccccccEEEEEEcccccHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
manrlkedekNERIIRGLLklqdnrrcincnslgtqyvctNFWTFvctncsgihrefTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLkewdpqrqsfpdssnvERLRNFIKHVyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrsppyedtyerryneqsspggrsddknsrygyderspgneqenrqfgdyrrtsptrpevindwrrddrfgngrkfedrrisdgdsklegrspeqpkdpesssppvvrpvreilgdnvlplriseppkangvrvadgstntqrtassgnlgsanenqAEVKLEttgslidfdadpkpspavAQAQQKTVAQSvvqpassandnnwasfdlapqvkvsqtssnlnTLETVFSQlsvpasvpgqvsgipsgagapviapatnvnvlpgggspvasvghtpfsvfsaaapaapavsgfatfpsanapapapgvtpllpvsvnagnsfsmqhqpplfptaggqftasqftppvagssnnqqWNTSLaqnaqgppaaqpaqsvpkpalesasgglsqpspvevkstgrtalpedlftanyssfpasvpgwqtvpphgmVYAMqyntaapmpnfvhsksttnpfdvnndshpvqaqtfpsmaslqgalpnvshppgllrtssltpspawmppqaspypsampsqmptyaaaipsqmpthapampprpylgpqvpsnvppsglei
manrlkedekneriirgllklqdnrrcINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVllkewdpqrqsfpdssnverlrnfikhvyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrsppyedtyerryneqsspggrsddknsrygyderspgneqenrqfgdyrrtsptrpevindwrrddrfgngrkfedrrisdgdsklegrspeqpkdpesssppvvrpvREILGdnvlplriseppkangvrvadgstntqrtassgnlgsanenQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGLEI
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDpesssppvvrpvreILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPavaqaqqktvaqsvvqPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTpfsvfsaaapaapavsgfaTFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLaqnaqgppaaqpaqsvpkpaLESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGLEI
*************IIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSM*****************************************RLRNFIKHVYVDRRYT*****************************************************************************************************************************************************************************************************************************************************************TVF**********************PVIAPATNVNVLPGG***VASVGHTPFSVFS******************************************************************************************************************************LFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAA*******************************************************************************************************************
****************GLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFP*****ERLRNFIKHVYVDRRYTGE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
********EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYE***********************************FGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISD**********************VVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADP************************ANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLA*************************************TGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGLEI
********EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAP*MPPRP*****************
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ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGLEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query711 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation no no 0.233 0.255 0.617 4e-58
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.167 0.212 0.355 3e-21
P52594562 Arf-GAP domain and FG rep yes no 0.167 0.211 0.355 3e-21
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.167 0.212 0.355 3e-21
Q2TA45562 Arf-GAP domain and FG rep yes no 0.167 0.211 0.355 3e-21
Q80WC7479 Arf-GAP domain and FG rep no no 0.150 0.223 0.368 2e-16
O95081481 Arf-GAP domain and FG rep no no 0.150 0.222 0.368 2e-16
Q9FL69483 Probable ADP-ribosylation no no 0.216 0.318 0.300 2e-13
Q8IYB5467 Stromal membrane-associat no no 0.119 0.182 0.344 2e-12
Q5EA00429 Stromal membrane-associat no no 0.170 0.282 0.289 3e-12
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 128/170 (75%), Gaps = 4/170 (2%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           M    +E+E+NE+IIRGL+KL  NRRCINCNSLG QYVCT FWTFVC  CSGIHREFTHR
Sbjct: 1   MMGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSM+KFTS+EV+ LQ GGNQRA+E+ LK WD QRQ  P++SN ER+R FIK+VYV +
Sbjct: 61  VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120

Query: 121 RYTGERNYDKPPRVKMGDKEDSYDIRR--DTYQGGSRSPPYEDTY-ERRY 167
           +Y G  + DKP +    D   S D+ R  ++Y   S+SPPY+  Y ERRY
Sbjct: 121 KYAGANDADKPSKDSQ-DHVSSEDMTRRANSYHSYSQSPPYDYQYEERRY 169
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
359484370759 PREDICTED: uncharacterized protein LOC10 0.974 0.913 0.636 0.0
356529609674 PREDICTED: uncharacterized protein LOC10 0.874 0.922 0.554 0.0
356527795691 PREDICTED: uncharacterized protein LOC10 0.898 0.924 0.549 0.0
449521856711 PREDICTED: uncharacterized LOC101209764 0.918 0.918 0.560 0.0
357521059688 hypothetical protein MTR_8g103750 [Medic 0.888 0.918 0.549 0.0
356511345687 PREDICTED: uncharacterized protein LOC10 0.894 0.925 0.538 0.0
297743304734 unnamed protein product [Vitis vinifera] 0.933 0.904 0.522 0.0
357500413698 Arf-GAP domain and FG repeats-containing 0.869 0.885 0.504 1e-179
225442683740 PREDICTED: probable ADP-ribosylation fac 0.924 0.887 0.506 1e-176
224142117649 predicted protein [Populus trichocarpa] 0.533 0.583 0.744 1e-164
>gi|359484370|ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera] gi|297738855|emb|CBI28100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/727 (63%), Positives = 530/727 (72%), Gaps = 34/727 (4%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           MANR+KEDEKNERIIRGLLKL +NRRCINCNSLG QYVCTNFWTFVCT CSGIHREFTHR
Sbjct: 1   MANRMKEDEKNERIIRGLLKLPENRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSMAKFTSQEV +LQ GGN+R KE   KEWDPQR SFPDSSN+ERLR+FIKHVYVDR
Sbjct: 61  VKSVSMAKFTSQEVSSLQRGGNERVKEFYFKEWDPQRHSFPDSSNIERLRDFIKHVYVDR 120

Query: 121 RYTGERNYDKPPRVKMGDKEDSYDIRR-DTYQGGSRSPPYEDTYERRYNEQSSPGGRSDD 179
           RY+GER++DKPPRVKMGDKE+ Y+ R+ D YQGGSRSPPYED+Y+RRY++Q SPGGRSDD
Sbjct: 121 RYSGERSFDKPPRVKMGDKEEPYENRKMDNYQGGSRSPPYEDSYDRRYSDQRSPGGRSDD 180

Query: 180 KNSRYGYD-ERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGD 238
           KN RYGYD  RSPG++ ENRQ GDYRR SP RPE++NDWRR+DRFGNGRK      SD +
Sbjct: 181 KNFRYGYDGRRSPGSDLENRQHGDYRR-SPVRPEIVNDWRREDRFGNGRK------SDRE 233

Query: 239 SKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTA 298
           +  EGRSP+  KD ++SSPP+VRPVREILGDNV PLR+ EPPKANG RV DG   TQRTA
Sbjct: 234 TNREGRSPDHQKDLDASSPPMVRPVREILGDNVSPLRVIEPPKANGGRVGDGFARTQRTA 293

Query: 299 SSGNLGSANENQAEVKLETTGSLIDFDADPKPSPA--VAQAQQKTVAQSVVQPASSANDN 356
           SS +LGS+N N  E+K E +G LIDFDADP+P  A  V Q QQ  V Q++ QP SS+ND 
Sbjct: 294 SSSSLGSSNGNPGELKRENSGILIDFDADPEPPVAATVPQTQQPPV-QTIAQPISSSND- 351

Query: 357 NWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNV 416
           NWASFD A + KVSQ  SN+N LETV SQLSVPASVPG  SG+P+  GAP   P  NV+V
Sbjct: 352 NWASFDFATEAKVSQAPSNVNALETVLSQLSVPASVPGHGSGVPNSGGAPTAVPVGNVSV 411

Query: 417 LP-GGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGN 475
           LP  G S    V   P S F   APA   V+ FA FP A A A APG+TP+L    + GN
Sbjct: 412 LPMSGDSLFPPVRPIPTSPFLGGAPA--PVNTFAAFPPAAAAAAAPGLTPML--HGHDGN 467

Query: 476 SF----------SMQHQP-PLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGP-- 522
           SF          SMQ+Q   LFP  G Q  A QF P V G+S NQQWN+ L  N QGP  
Sbjct: 468 SFVKVTGAGQWPSMQYQQHSLFPDTGSQSIAQQFAPSVGGTSTNQQWNSPLLPNTQGPFS 527

Query: 523 -PAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTV 581
            PAAQ  Q+V KP +  AS   S P PVEVK  GR  LP DLF A Y      VPGWQT 
Sbjct: 528 APAAQAPQTVSKPQV-VASSLSSPPLPVEVKPAGRKELPLDLFAATYQPISMQVPGWQTG 586

Query: 582 PPHGMVYAMQYNTAAPMPN-FVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSH 640
           PPHGM + +QYNTAAP+P+ F HS  +TNPFD+NN+  P QA TFPSMASLQG+LPN+  
Sbjct: 587 PPHGMGFHLQYNTAAPLPSTFSHSSKSTNPFDLNNEPPPAQAPTFPSMASLQGSLPNMPP 646

Query: 641 PPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQV 700
             GLL +SS      W PPQ+S YP AMP Q P Y + +P Q+P +A  MPPR Y+G QV
Sbjct: 647 SMGLLHSSSAGTQSTWTPPQSSLYPLAMPPQAPPYVSGMPPQVPPYASGMPPRAYMGQQV 706

Query: 701 PSNVPPS 707
           P  +PPS
Sbjct: 707 PGAIPPS 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529609|ref|XP_003533382.1| PREDICTED: uncharacterized protein LOC100817254 [Glycine max] Back     alignment and taxonomy information
>gi|356527795|ref|XP_003532492.1| PREDICTED: uncharacterized protein LOC100815114 [Glycine max] Back     alignment and taxonomy information
>gi|449521856|ref|XP_004167945.1| PREDICTED: uncharacterized LOC101209764 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357521059|ref|XP_003630818.1| hypothetical protein MTR_8g103750 [Medicago truncatula] gi|355524840|gb|AET05294.1| hypothetical protein MTR_8g103750 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511345|ref|XP_003524387.1| PREDICTED: uncharacterized protein LOC100781002 [Glycine max] Back     alignment and taxonomy information
>gi|297743304|emb|CBI36171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500413|ref|XP_003620495.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] gi|355495510|gb|AES76713.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442683|ref|XP_002280037.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142117|ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|222865839|gb|EEF02970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.322 0.380 0.558 4.8e-93
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.317 0.359 0.483 7e-76
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.164 0.216 0.361 1.4e-21
MGI|MGI:1333754561 Agfg1 "ArfGAP with FG repeats 0.263 0.333 0.297 5.1e-21
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.164 0.208 0.361 1.5e-20
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.164 0.208 0.361 3e-20
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.263 0.333 0.292 1.5e-19
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.263 0.333 0.292 1.6e-19
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.174 0.219 0.306 2.4e-19
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.263 0.353 0.292 2.9e-19
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 645 (232.1 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 148/265 (55%), Positives = 177/265 (66%)

Query:     1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
             MA R+KEDEKNE+IIR LLKL +N+RCINCNSLG QYVCT FWTFVCTNCSGIHREFTHR
Sbjct:     1 MAGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHR 60

Query:    61 VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
             VKS+SMAKFTSQEV AL+EGGNQ AK++  K  D QRQS PD SNVERLR+FI+HVYV++
Sbjct:    61 VKSISMAKFTSQEVTALKEGGNQHAKDIYFKGLDQQRQSVPDGSNVERLRDFIRHVYVNK 120

Query:   121 RYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSD-- 178
             RYT E+N DK P           + R  +   GSRSPPYED Y+RRY ++SSPGGRS   
Sbjct:   121 RYTNEKNDDKSPS----------ETRSSS---GSRSPPYEDGYDRRYGDRSSPGGRSPGF 167

Query:   179 DKNSRYGYDER-SPG-----NE--QENRQFGDYRRTSPT---RPEVINDWRRDDRFGNGR 227
             +  SR   + R SP      N+  +E+R FG  R+TS      PE + D       G+  
Sbjct:   168 ETGSRNAVNNRKSPARPEILNDWRREDR-FGG-RKTSEEGSQSPEQVKD------LGSAS 219

Query:   228 KFEDRRISD--GDSKLEGRSPEQPK 250
                 R + +  GDS +  R  E PK
Sbjct:   220 PPVARPVREILGDSVIPLRVGEPPK 244
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0003924 "GTPase activity" evidence=IDA
GO:0005525 "GTP binding" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=IDA
GO:0009615 "response to virus" evidence=IMP
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1333754 Agfg1 "ArfGAP with FG repeats 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016774001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (706 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 5e-75
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 6e-51
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 8e-40
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-20
COG5347319 COG5347, COG5347, GTPase-activating protein that r 3e-12
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.003
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  255 bits (653), Expect = 5e-75
 Identities = 229/732 (31%), Positives = 324/732 (44%), Gaps = 76/732 (10%)

Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVS 65
           KE+E+NE+IIRGL+KL  NRRCINCNSLG Q+VCTNFWTF+C  CSGIHREFTHRVKSVS
Sbjct: 5   KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVS 64

Query: 66  MAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125
           M+KFTSQ+V+ALQ GGNQRA+E+ LK+WD QRQ  PD+S V+++R FIK +YVD++Y G 
Sbjct: 65  MSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGG 124

Query: 126 RNYDKPPR--VKMGDKEDSYDIRRDTYQGGSRSPPYEDTYE-RRYNEQSSPGGRSDDKNS 182
           + +DKPPR   ++   ED    R  +Y   S+SPPY+  YE RRY +Q+           
Sbjct: 125 KTHDKPPRDLQRIRSHEDETR-RACSYHSYSQSPPYDFQYEDRRYGKQA----------- 172

Query: 183 RYGYDERSPGNEQENRQFGDYRR--TSPTRPEVINDWRRDDRFGNG---RKFEDRRISDG 237
             G   R PG+++     G       SPTR   +ND   +DRF N        D  +S G
Sbjct: 173 --GILTRKPGSDR-GLNVGKMASFICSPTR---LNDRMFEDRFANEGSVSGVSDYSVSSG 226

Query: 238 DS--KLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQ 295
               +    SP   KD   S P  ++P ++ILG++V   RI     A   + A+G  + Q
Sbjct: 227 GDLVRSGAESPNFQKDIAFSPP--IQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQ 284

Query: 296 RTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSAND 355
           R+AS G++GS +     +K   +GSL D  A+ +   A    Q K  A   +  + S   
Sbjct: 285 RSASLGSIGSFDSLSVSIKSFNSGSLADIVAEAE--QAAGNHQDKMPAFPRMAGSGS--- 339

Query: 356 NNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVI-APATNV 414
              AS D        + ++ +     +F   +   + P  +  IP    AP I A     
Sbjct: 340 --HASLDHFKAPVAPEAAAPMAPPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQ 397

Query: 415 NVLPGG-GSPVASVGHTPFSVFSAAAP--AAPAVSGFATFPSANAPAPAPGVTPLLPVSV 471
             LP               +     +P  + P   G+ATF      A  PG   L P S+
Sbjct: 398 TSLPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSI 457

Query: 472 NAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQ-------NAQGPPA 524
               + S           G Q+   Q +     +S    W   L         +AQ   A
Sbjct: 458 GPSMAGSANFDQVPSLDKGMQWPPFQNSSDEESASGPAPWLGDLHNVEAPDNTSAQNWNA 517

Query: 525 AQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPH 584
            +   SV    LE         +   +  T       D      +    +  G +   PH
Sbjct: 518 FEFDDSVAGIPLEGIKQSSEPQTAANMPPTA------DQLIGCKALEDFNKDGIKRTAPH 571

Query: 585 G------------MVYAMQYNTAA-----PMPNFVHSKSTTNPFDVNNDSHPVQAQTFPS 627
           G            ++    Y   A        +  +   + NPFD+  DS       F  
Sbjct: 572 GQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLD 631

Query: 628 MASLQGALPNVSHPPGLLRTSSLTPSPAWMP--PQASPYPSAMPSQMPTYAAAIPSQMPT 685
           M+SL+ ALP+   P   L +    P   W P     +  P+A    +   A   P+    
Sbjct: 632 MSSLEAALPDAHLPSAFLGSGMTEP---WFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLG 688

Query: 686 HAPAMPPRPYLG 697
           +     P  ++G
Sbjct: 689 NVQTQGPVAFVG 700

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 711
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.93
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.91
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.9
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.88
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.81
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.66
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.65
KOG0702524 consensus Predicted GTPase-activating protein [Sig 97.51
PLN03131705 hypothetical protein; Provisional 94.38
KOG0521785 consensus Putative GTPase activating proteins (GAP 89.56
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 81.19
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-99  Score=831.23  Aligned_cols=608  Identities=34%  Similarity=0.516  Sum_probs=490.6

Q ss_pred             CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCCcceeecccccCCHHHHHHHHhc
Q 005151            1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEG   80 (711)
Q Consensus         1 m~sr~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LGHrVKSLsLD~Wt~eEVe~m~~g   80 (711)
                      |++| |++|+++++|++|++.++|++|+||++++|+|||+|||||||++|+||||+|+||||||+||+|+++||++|+.+
T Consensus         1 m~Sk-kqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~g   79 (705)
T PLN03131          1 MGSR-KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNG   79 (705)
T ss_pred             Ccch-HHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHh
Confidence            8999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCcccccccc-cCCCCCCCCCCC
Q 005151           81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRR-DTYQGGSRSPPY  159 (711)
Q Consensus        81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF~~e~~~DkPpRl~~gd~eds~e~Rr-~~~qs~SRSppy  159 (711)
                      ||+++|+|||++|+..+++.|+.++.+++|+|||.|||+|+|+.....++|++....-+.+..|+|| ++|++|+|||+|
T Consensus        80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY  159 (705)
T PLN03131         80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPY  159 (705)
T ss_pred             ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCc
Confidence            9999999999999987777888888888999999999999999999999999887666777779999 999999999999


Q ss_pred             cchhh-cccccCCCCCCCCccccccCCCCCCCCCchhhh--cccCCCccCCCCCCccccccccccccCCCC---CCCCcc
Q 005151          160 EDTYE-RRYNEQSSPGGRSDDKNSRYGYDERSPGNEQEN--RQFGDYRRTSPTRPEVINDWRRDDRFGNGR---KFEDRR  233 (711)
Q Consensus       160 ~d~~e-rRy~~rss~~~R~~dkl~rmgy~d~~~~~d~l~--~~~Gd~~r~sP~r~e~v~d~~~~Dr~~~~~---~~~~~r  233 (711)
                      +++|| ||||++..+++|+             +++|+..  +++|+|+| ||+|+   +|||+||||+++.   +++|++
T Consensus       160 ~~~yedrRygk~~~~~~R~-------------pg~d~~~~~~k~~~~~~-SP~r~---~d~~~eDrf~ne~~~~r~~d~s  222 (705)
T PLN03131        160 DFQYEDRRYGKQAGILTRK-------------PGSDRGLNVGKMASFIC-SPTRL---NDRMFEDRFANEGSVSGVSDYS  222 (705)
T ss_pred             ccccccccccccccccccC-------------Ccccccccccccccccc-Cchhh---hhhhhhcccccCCCCccccccc
Confidence            99998 6899988888877             7777764  99999999 99996   9999999999996   677777


Q ss_pred             cCCCC--CCcCCCCCCCCCCCCCCCCCccCchhhhcCCCCCCcccCCCCCCCCCccCCCCCcccccCCCCCCCCCCCChh
Q 005151          234 ISDGD--SKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQA  311 (711)
Q Consensus       234 ~s~~~--~~~~~~sp~~~Kd~~~sspp~~~~~~~ilg~~v~~lr~~~~~~~~~~~~~~g~~~~qrt~~~~~~~s~~~~~~  311 (711)
                      +|+++  .+.+.+|||++||+.. || +|||+|+||||||++|||++|+|++..++++|.+++|||+|+|+++|++|+++
T Consensus       223 ~ss~~~~~r~~~~SP~~~k~~~~-Sp-~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~  300 (705)
T PLN03131        223 VSSGGDLVRSGAESPNFQKDIAF-SP-PIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSV  300 (705)
T ss_pred             ccccccccccCCCCCCcccccCC-CC-CcccchhhccccccccccCCCcccccccccccccccccccccCcccccCCCcc
Confidence            77655  4557799999999874 45 66999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCccccCCCCCCCChhhhhhhhhhhcccccccCCCCCCCCCccccCCcCcccccCCCCCChhHHHhhccCCCCC
Q 005151          312 EVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPAS  391 (711)
Q Consensus       312 ~~k~~~s~sLiDf~~~~e~~~~~~~~~qt~~~~~~~~~~~s~~~~~wAsfd~~~~~~~~~~~~~~n~le~~l~qls~~~s  391 (711)
                      ++|+++++|||||++|+|+..+.   .|.++.....    .......|+-|.+-..-++.+..+. .--.-|+||+..+.
T Consensus       301 s~Ks~~s~sL~D~~~e~~~~~~~---~q~k~~~~~~----~~~~~~~~s~d~f~~~v~p~~~~~~-a~pIDLFqlp~ts~  372 (705)
T PLN03131        301 SIKSFNSGSLADIVAEAEQAAGN---HQDKMPAFPR----MAGSGSHASLDHFKAPVAPEAAAPM-APPIDLFQLPATSP  372 (705)
T ss_pred             ceeecccccccccccCccccccc---cccccCCccc----ccccccccccccccccccccccccc-CCchhhhhccCCCC
Confidence            99999999999999999987653   3333222211    1334555565555444333333221 12456899999999


Q ss_pred             CCCCCcCCCCCCCCCcccCCCcccccCCCCCCCcccCCCccccccccCCCCCccccccccCCCCCCCCCCCCCCCCcccc
Q 005151          392 VPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSV  471 (711)
Q Consensus       392 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~s~~s~~s~~~~~~~~~~~  471 (711)
                      +|.++.+.++        +                +-               ...++.++.+++.|++   ....++.-+
T Consensus       373 a~~vdlf~~s--------~----------------l~---------------~~p~~n~~q~~qts~p---~~~dlfag~  410 (705)
T PLN03131        373 APPVDLFEIP--------P----------------LD---------------PAPAINAYQPPQTSLP---SSIDLFGGI  410 (705)
T ss_pred             CCcccccccC--------c----------------cc---------------CCCccccCCCCcccCC---ccccccccc
Confidence            9998888773        0                00               0112234445555554   455667788


Q ss_pred             CCCCCCcccCCC---CCcCCCCCCccccccCCCCc--cCCCC------------------------Ccc---ccccccC-
Q 005151          472 NAGNSFSMQHQP---PLFPTAGGQFTASQFTPPVA--GSSNN------------------------QQW---NTSLAQN-  518 (711)
Q Consensus       472 ~~~q~~~~q~qq---~~f~~~~~~~~~q~~t~~~~--~~~nn------------------------Q~w---~~~~~q~-  518 (711)
                      ++||..+..||.   .-.|+++||.++...++++.  +..|=                        ..|   +..+.|+ 
T Consensus       411 ~qqq~~~s~~~~~~~~s~pknegwa~fd~~~p~~s~~~~~n~t~~~v~~~~~~~~~~d~v~~~~~~~q~Pp~~~~~~~~s  490 (705)
T PLN03131        411 TQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQWPPFQNSSDEES  490 (705)
T ss_pred             cccCccccccccCcccCCccccCcccccCCCcccccCCcccccccccccccccCcchhhccccccccccCCCcccccccc
Confidence            888877755555   77899999999864444442  22222                        234   3333344 


Q ss_pred             -CCCCCCCCCCCCCCCcccccCC--------------CCCCCCCCccccccCCccCcccccccccCCCCCCCCCCccCCC
Q 005151          519 -AQGPPAAQPAQSVPKPALESAS--------------GGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPP  583 (711)
Q Consensus       519 -~~~~p~~~~~~~~~~~~~~~~~--------------~~~s~~~~~e~k~sgrkeLP~DlFt~~y~~~p~~vpGwq~~pp  583 (711)
                       ++..||....+.|-++.+++.-              .+.+....+|....--+.-.+|.|.....+......|.|+..|
T Consensus       491 ~s~~~pW~~~~~~V~~~~~~~~q~WnAF~~~ds~~~~~l~~~~~~s~~q~~~~~~~t~~q~~~~~~~~d~~~d~~~r~~p  570 (705)
T PLN03131        491 ASGPAPWLGDLHNVEAPDNTSAQNWNAFEFDDSVAGIPLEGIKQSSEPQTAANMPPTADQLIGCKALEDFNKDGIKRTAP  570 (705)
T ss_pred             cccCCcccccchhcccCCccCccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccCC
Confidence             4556788888999998875421              2345556677777777888888999999999999999999999


Q ss_pred             CCc----eeceeccCCC-------------CCCCcccccCCCCCCCCCCCCCCccccCCCCcccccccCCCCCCCCCCCC
Q 005151          584 HGM----VYAMQYNTAA-------------PMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLR  646 (711)
Q Consensus       584 ~gm----g~~mqy~~~~-------------p~~~~~~~~ks~NPFD~~~~~~~~Q~~~fPsm~~lqgalp~~~~~~~~~~  646 (711)
                      +||    ||+.+-...+             .|++--+..||+|||||.+|....+.-||-.|.+||+|||+.     .++
T Consensus       571 ~~~~~~~g~~~~~~~~~~ps~~~~~~~~~~~~~s~~~~~ks~npfdl~~dsd~~~~~mf~d~sslq~~lp~~-----~~~  645 (705)
T PLN03131        571 HGQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLEAALPDA-----HLP  645 (705)
T ss_pred             CCCcCCCCCCCCCccccCCCCCccccccccccccccCccCCCCCcCCccccccCcccceeehHHHHhhcCCC-----CCc
Confidence            999    5555532222             344445678999999999999999999999999999999965     344


Q ss_pred             CC-CC-CCCCCCCCCCCC-CCCCCCCCCCccccccCCCCC
Q 005151          647 TS-SL-TPSPAWMPPQAS-PYPSAMPSQMPTYAAAIPSQM  683 (711)
Q Consensus       647 ss-~~-~~s~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~  683 (711)
                      +. +| +.+..|++.-+. +|+++.|+++++|||+..+..
T Consensus       646 ~~f~g~~~tepw~~~~~~~~yip~~pqggl~y~agq~~~~  685 (705)
T PLN03131        646 SAFLGSGMTEPWFPQDLAMTYIPAAPQGGLAYMAGQAPNP  685 (705)
T ss_pred             hhhhcCCCCCccccCCCcccccCCCCCCCchhhcccCCcc
Confidence            45 56 788999999876 999999999999999775554

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 2e-18
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 3e-17
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 5e-11
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 6e-11
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-07
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 3e-06
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 3e-06
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 4e-06
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 8e-06
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-04
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 1e-04
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 3e-04
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 7e-04
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKS 63
           K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     HRVKS
Sbjct: 7   KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKS 66
Query: 64  VSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
           +SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  +R+
Sbjct: 67  ISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-47
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 6e-24
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 5e-23
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 6e-23
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-22
2owa_A138 Arfgap-like finger domain containing protein; zinc 2e-22
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 1e-21
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 3e-20
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-19
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-16
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-16
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 3e-16
3o47_A329 ADP-ribosylation factor GTPase-activating protein 5e-16
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 4e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  163 bits (413), Expect = 2e-47
 Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 2   ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF--TH 59
           + + K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     H
Sbjct: 3   SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPH 62

Query: 60  RVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVD 119
           RVKS+SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  
Sbjct: 63  RVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEK 122

Query: 120 RRY 122
           +R+
Sbjct: 123 KRW 125
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query711
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.98
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.97
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.96
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.96
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.94
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.94
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.93
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.92
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 83.62
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 82.89
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
Probab=100.00  E-value=8.5e-39  Score=301.67  Aligned_cols=124  Identities=35%  Similarity=0.689  Sum_probs=116.4

Q ss_pred             cchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC--cceeecccccCCHHHHHHHHh
Q 005151            2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE   79 (711)
Q Consensus         2 ~sr~keder~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG--HrVKSLsLD~Wt~eEVe~m~~   79 (711)
                      .++.+++|+++++|+.|++.|+|++|+|||+.+|+|||+|||||||++|+||||.||  |+||||+||+|++++|++|+.
T Consensus         3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~   82 (140)
T 2olm_A            3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK   82 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence            356689999999999999999999999999999999999999999999999999998  699999999999999999999


Q ss_pred             cChHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHhhhcccccC
Q 005151           80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE  125 (711)
Q Consensus        80 gGN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIr~KYveKrF~~e  125 (711)
                      +||.++|++||+++++...+.|+.++.+.+++||++||++|+|+.+
T Consensus        83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~  128 (140)
T 2olm_A           83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP  128 (140)
T ss_dssp             CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred             hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence            9999999999999987667788877777889999999999999865
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 711
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-32
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (298), Expect = 3e-32
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 12  ERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK 68
           + II  + ++  N  C +C +    ++ TN     C  CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 69  FTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGERN 127
             + E+   +  GN    E++      +    P+  S++   +++I   Y++RRY  +++
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 122

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query711
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 90.58
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 81.8
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-37  Score=279.57  Aligned_cols=116  Identities=24%  Similarity=0.512  Sum_probs=104.0

Q ss_pred             HHHHHHHHHcCCCCCCCcCCCCCCCCeeEccchhhhhhhhhhhhccCC---cceeecccccCCHHHHHHHHhcChHHHHH
Q 005151           11 NERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRAKE   87 (711)
Q Consensus        11 ~ekiLr~Llk~PgNk~CADCGs~~P~WaSiNfGVFVCi~CSGIHR~LG---HrVKSLsLD~Wt~eEVe~m~~gGN~~aN~   87 (711)
                      ++++|++|++.|+|++|||||+.+|+|||+|||||||++|+||||+||   |+||||+||+|+++||++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            478999999999999999999999999999999999999999999999   59999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCC-CchHHHHHHHHHHHhhhcccccCC
Q 005151           88 VLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGER  126 (711)
Q Consensus        88 i~Ea~~~~~~~p~Pd-ssd~~~lreFIr~KYveKrF~~e~  126 (711)
                      +||++++......|. .++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999999765433444 234456788999999999998653
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure