Citrus Sinensis ID: 005168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710
Protein Sequence
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Secondary Structure (PSIPRED)
cEEccccccccccHHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccEEEcccccccccccHHcccccccccEEEcccccccccccccEEEccccccEEEcccccccccccccEEEccccccEEEcccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccHHcccccccEEEccccccccEEEccccccEEccccccccccccccEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccccccccccccccccEEEEccEEEEEEEcEEEEEcccccccccEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHEEEHHHHccccHHHHHHHHHHHHHEEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEccccccccccccHEEEcccccccccccHHHHccccccEEEEccccccccccccHEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcHcccEEEcccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccEEEEEEcccccccccccccccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccccccEEEccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mlnlsgnsfnNTILSSLTHLSSlrslnlngnslegsidvkefdslrdleeldigenkidKFVVskelylddtgfkgtldirefdsfnnlevldmsynkidnlvvpqelrlsdnhfripisleplfnhsrLKIFHAknnqmnaeiteshsltapnfqlqslslsssygdgvtfpkflyhqhdleYVRLSHIKmngefpnwllennTKLATLFLVNdslagpfwlpihshkrlgildisnnnirghipveigdvlpsLYVFNIsmnaldgsipssfgnmkFLQLLDlsnnqltgeipehlaVGCVNLQFLMLSNnslkeglyltnnslsgnipgwlgnLTWLIHIImpenhlegpipvefcqlyslqildisdnnisgslpscfhplsieQVHLSKNMLHRQLKRDLsynllngsipdWIGELSQLSHLILghnnlegevpvQLCElnqlqlldlsnnslhgsippcfdnttlyesynnsssldekfeisffiegpqgdfttknIAYIYQGKVLSLLSGLYLSCNKlighippqignltRIQTLNLSynnltglipstfsnlkhiESLDLSYnklngkiphqlVELKTLEVFSVAYNNLSGEILEWTAQFATfnkssyegntflcglplpicrspatmseasignerddnlidmdsFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVdnliptrfch
Flexible Loop (DISEMBL)
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDleeldigenkidkfvvskelylddtgfkgtldiREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Low Complexity Region (SEG)
MLNLSGNSFnntilsslthlsslrslnlngnslegsiDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFqlqslslsssYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVqlcelnqlqlldlsnnslHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Disordered region (IsUnstruct)
***********************************SIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKN*******************L*SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSP************DDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFC*
Disordered Region (DISOPRED)
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYE************EISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG****************************DSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFC*
Disordered Region (DISEMBL)
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Disordered Region (DISPRO)
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	710	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.852	0.483	0.318	3e-59
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.904	0.514	0.309	8e-59
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.885	0.550	0.292	2e-50
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.877	0.516	0.290	1e-49
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.877	0.516	0.290	2e-49
Q9FL28	1173	LRR receptor-like serine/	no	no	0.814	0.492	0.311	5e-48
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.867	0.516	0.290	1e-47
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.805	0.490	0.297	6e-47
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.888	0.572	0.300	3e-46
Q9LJF3	1164	Receptor-like protein kin	no	no	0.945	0.576	0.287	4e-46

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  230 bits (586), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 222/698 (31%), Positives = 338/698 (48%), Gaps = 93/698 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-- 59
           LNL GN     I   LT L++L++L+L+ N+L G I  +EF  +  LE L + +N++   
Sbjct: 269 LNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH-EEFWRMNQLEFLVLAKNRLSGS 327

Query: 60  --KFVVS-----KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSD 112
             K + S     K+L+L +T   G +   E  +  +L++LD+S N +             
Sbjct: 328 LPKTICSNNTSLKQLFLSETQLSGEIPA-EISNCQSLKLLDLSNNTLTG----------- 375

Query: 113 NHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHS-LTAPNFQLQSLSLSSSYGDGVT 171
              +IP SL   F    L   +  NN +   ++ S S LT     LQ  +L  +  +G  
Sbjct: 376 ---QIPDSL---FQLVELTNLYLNNNSLEGTLSSSISNLT----NLQEFTLYHNNLEG-K 424

Query: 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231
            PK +     LE + L   + +GE P   + N T+L  +    + L+G     I   K L
Sbjct: 425 VPKEIGFLGKLEIMYLYENRFSGEMP-VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDL 483

Query: 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 291
             L +  N + G+IP  +G+    + V +++ N L GSIPSSFG +  L+L  + NN L 
Sbjct: 484 TRLHLRENELVGNIPASLGNC-HQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQ 542

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLKEGL--------YL----TNNSLSGNIPGWLGNLTW 339
           G +P+ L +   NL  +  S+N     +        YL    T N   G+IP  LG  T 
Sbjct: 543 GNLPDSL-INLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
           L  + + +N   G IP  F ++  L +LDIS N++SG +P         ++ L K + H 
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPV--------ELGLCKKLTHI 653

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
               DL+ N L+G IP W+G+L  L  L L  N   G +P ++  L  +  L L  NSL+
Sbjct: 654 ----DLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLN 709

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
           GSIP    N     + N    L+E       + GP      K          LS L  L 
Sbjct: 710 GSIPQEIGNLQALNALN----LEENQ-----LSGPLPSTIGK----------LSKLFELR 750

Query: 520 LSCNKLIGHIPPQIGNLTRIQT-LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
           LS N L G IP +IG L  +Q+ L+LSYNN TG IPST S L  +ESLDLS+N+L G++P
Sbjct: 751 LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

Query: 579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSE 638
            Q+ ++K+L   +++YNNL G++     QF+ +   ++ GN  LCG PL  C    + ++
Sbjct: 811 GQIGDMKSLGYLNLSYNNLEGKL---KKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQ 867

Query: 639 ASIGNERDDNLIDMDSFFITFTTS-YVIVIFAIVIILY 675
            S+  +            I+  +S   I +  +VIIL+
Sbjct: 868 RSLSPK--------TVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  229 bits (583), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 225/728 (30%), Positives = 344/728 (47%), Gaps = 86/728 (11%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +LNL+ NS    I S L  +S L+ L+L  N L+G I  K    L +L+ LD+  N +  
Sbjct: 243 ILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP-KSLADLGNLQTLDLSANNLTG 301

Query: 61  FVVSK--------ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQ------ 106
            +  +        +L L +    G+L      +  NLE L +S  ++   +  +      
Sbjct: 302 EIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQS 361

Query: 107 --ELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHS-LTAPNFQLQSLSLS 163
             +L LS+N     I  E LF    L   +  NN +   ++ S S LT     LQ L L 
Sbjct: 362 LKQLDLSNNSLAGSIP-EALFELVELTDLYLHNNTLEGTLSPSISNLT----NLQWLVLY 416

Query: 164 SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWL 223
            +  +G   PK +     LE + L   + +GE P  +  N T L  + +  +   G    
Sbjct: 417 HNNLEG-KLPKEISALRKLEVLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPP 474

Query: 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283
            I   K L +L +  N + G +P  +G+    L + +++ N L GSIPSSFG +K L+ L
Sbjct: 475 SIGRLKELNLLHLRQNELVGGLPASLGNC-HQLNILDLADNQLSGSIPSSFGFLKGLEQL 533

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLY------------LTNNSLSGNIP 331
            L NN L G +P+ L +   NL  + LS+N L   ++            +TNN     IP
Sbjct: 534 MLYNNSLQGNLPDSL-ISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIP 592

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 391
             LGN   L  + + +N L G IP    ++  L +LD+S N ++G++P         Q+ 
Sbjct: 593 LELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPL--------QLV 644

Query: 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLL 451
           L K + H     DL+ N L+G IP W+G+LSQL  L L  N     +P +L    +L +L
Sbjct: 645 LCKKLTHI----DLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVL 700

Query: 452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDE-KFEISFFIEGPQGDFTTKNIAYIYQGK 510
            L  NSL+GSIP    N       N    LD+ +F  S     PQ             GK
Sbjct: 701 SLDGNSLNGSIPQEIGNLGALNVLN----LDKNQFSGSL----PQA-----------MGK 741

Query: 511 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT-LNLSYNNLTGLIPSTFSNLKHIESLDLS 569
            LS L  L LS N L G IP +IG L  +Q+ L+LSYNN TG IPST   L  +E+LDLS
Sbjct: 742 -LSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLS 800

Query: 570 YNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI 629
           +N+L G++P  + ++K+L   +V++NNL G++     QF+ +   S+ GNT LCG PL  
Sbjct: 801 HNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL---KKQFSRWPADSFLGNTGLCGSPLSR 857

Query: 630 CRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVE 689
           C    +       N +   L       I+  ++   +   I++I     ++++R  +F +
Sbjct: 858 CNRVRS-------NNKQQGLSARSVVIISAISALTAIGLMILVIAL---FFKQRHDFFKK 907

Query: 690 MWITTCYY 697
           +   +  Y
Sbjct: 908 VGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 209/714 (29%), Positives = 318/714 (44%), Gaps = 85/714 (11%)

Query: 26  LNLNGNSLEGSIDVKEFDSLRDLEELDIGEN--------KIDKFVVSKELYLDDTGFKGT 77
           +NL+G+ L G +    F SL  L  L + EN         +   +    L L  +G  GT
Sbjct: 83  INLSGSGLSGIVSFNAFTSLDSLSVLKLSENFFVLNSTSLLLLPLTLTHLELSSSGLIGT 142

Query: 78  LDIREFDSFNNLEVLDMSYNKI-----DNLVVP----QELRLSDNHFRIPIS--LEPLFN 126
           L    F  ++NL  + +SYN       ++L +     Q L LS N+   PIS    PL +
Sbjct: 143 LPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSS 202

Query: 127 HSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVR 186
              +       N ++  I++S  +   N  L+SL+LS +  DG   PK       L+ + 
Sbjct: 203 CVSMTYLDFSGNSISGYISDSL-INCTN--LKSLNLSYNNFDG-QIPKSFGELKLLQSLD 258

Query: 187 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIP 246
           LSH ++ G  P  + +    L  L L  ++  G     + S   L  LD+SNNNI G  P
Sbjct: 259 LSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFP 318

Query: 247 VEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 306
             I     SL +  +S N + G  P+S    K L++ D S+N+ +G IP  L  G  +L+
Sbjct: 319 NTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLE 378

Query: 307 FLMLSNN-------------SLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353
            L L +N             S    + L+ N L+G IP  +GNL  L   I   N++ G 
Sbjct: 379 ELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGE 438

Query: 354 IPVEFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSYNLLNG 412
           IP E  +L +L+ L +++N ++G +P  F   S IE V  + N              L G
Sbjct: 439 IPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNR-------------LTG 485

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF------ 466
            +P   G LS+L+ L LG+NN  GE+P +L +   L  LDL+ N L G IPP        
Sbjct: 486 EVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGS 545

Query: 467 --------DNTTLYESYNNSSSLDEKFEISFFIEGPQG-----DFTTKNIAYIYQGKVLS 513
                    NT  +     +S       + F    P+         + +   +Y G +LS
Sbjct: 546 KALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILS 605

Query: 514 LLSG------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLD 567
           L +       L LS N+L G IP +IG +  +Q L LS+N L+G IP T   LK++   D
Sbjct: 606 LFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFD 665

Query: 568 LSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627
            S N+L G+IP     L  L    ++ N L+G I +   Q +T   + Y  N  LCG+PL
Sbjct: 666 ASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPL 724

Query: 628 PICRS-----PATMSEASIGNERDDNLIDMDSF----FITFTTSYVIVIFAIVI 672
           P C++     PA   E              +S      I+  +  +++++AI +
Sbjct: 725 PECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 219/754 (29%), Positives = 338/754 (44%), Gaps = 131/754 (17%)

Query: 22  SLRSLNLNGNSLEGSI-DVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           +L S++L  N++ G I D+  F    +L+ L++ +N           +LD  G K  L  
Sbjct: 135 TLDSIDLAENTISGPISDISSFGVCSNLKSLNLSKN-----------FLDPPG-KEMLKG 182

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
             F    +L+VLD+SYN I             N F    S+        L+ F  K N++
Sbjct: 183 ATF----SLQVLDLSYNNISGF----------NLFPWVSSM----GFVELEFFSIKGNKL 224

Query: 141 NAEITE--------------SHSLTAPNFQ----LQSLSLSSS--YGD---------GVT 171
              I E              + S   P+F+    LQ L LSS+  YGD          ++
Sbjct: 225 AGSIPELDFKNLSYLDLSANNFSTVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCGKLS 284

Query: 172 FPKFLYHQ----------HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF 221
           F     +Q            L+Y+ L      G +PN L +    +  L L  ++ +G  
Sbjct: 285 FLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMV 344

Query: 222 WLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281
              +     L ++DISNNN  G +PV+    L ++    +S N   G +P SF N+  L+
Sbjct: 345 PESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLE 404

Query: 282 LLDLSNNQLTGEIPEHLAVGCV-NLQFLMLSNNSLKE-------------GLYLTNNSLS 327
            LD+S+N LTG IP  +    + NL+ L L NN  K               L L+ N L+
Sbjct: 405 TLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLT 464

Query: 328 GNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS- 386
           G+IP  LG+L+ L  +I+  N L G IP E   L +L+ L +  N+++G +P+     + 
Sbjct: 465 GSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTK 524

Query: 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN 446
           +  + LS N              L+G IP  +G LS L+ L LG+N++ G +P +L    
Sbjct: 525 LNWISLSNNQ-------------LSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 447 QLQLLDLSNNSLHGSIPPCFDNTT-------------LYESYNNSSSLDEKFEISFF--I 491
            L  LDL+ N L+GSIPP     +             +Y   + S        +  F  I
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI 631

Query: 492 EGPQGD-FTTK---NIAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQT 541
              Q D  +T+   N   +Y+G      +       L LS NKL G IP ++G +  +  
Sbjct: 632 RQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSI 691

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
           LNL +N+L+G+IP     LK++  LDLSYN+ NG IP+ L  L  L    ++ NNLSG I
Sbjct: 692 LNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMI 751

Query: 602 LEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA---SIGNERDDNLIDMDSFFIT 658
            E +A F TF    +  N+ LCG PLP+  S    S+A      + R  +L    +  + 
Sbjct: 752 PE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQHQKSHRRQASLAGSVAMGLL 809

Query: 659 FTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
           F+   +  IF ++I+       RR+    +E ++
Sbjct: 810 FS---LFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 219/754 (29%), Positives = 337/754 (44%), Gaps = 131/754 (17%)

Query: 22  SLRSLNLNGNSLEGSI-DVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           +L S++L  N++ G I D+  F    +L+ L++ +N           +LD  G K  L  
Sbjct: 135 TLDSIDLAENTISGPISDISSFGVCSNLKSLNLSKN-----------FLDPPG-KEMLKA 182

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
             F    +L+VLD+SYN I             N F    S+        L+ F  K N++
Sbjct: 183 ATF----SLQVLDLSYNNISGF----------NLFPWVSSM----GFVELEFFSLKGNKL 224

Query: 141 NAEITE--------------SHSLTAPNFQ----LQSLSLSSS--YGD---------GVT 171
              I E              + S   P+F+    LQ L LSS+  YGD          ++
Sbjct: 225 AGSIPELDFKNLSYLDLSANNFSTVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCGKLS 284

Query: 172 FPKFLYHQ----------HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF 221
           F     +Q            L+Y+ L      G +PN L +    +  L L  ++ +G  
Sbjct: 285 FLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMV 344

Query: 222 WLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281
              +     L ++DIS NN  G +PV+    L ++    +S N   G +P SF N+  L+
Sbjct: 345 PESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLE 404

Query: 282 LLDLSNNQLTGEIPEHLAVGCV-NLQFLMLSNNSLKE-------------GLYLTNNSLS 327
            LD+S+N LTG IP  +    + NL+ L L NN  K               L L+ N L+
Sbjct: 405 TLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLT 464

Query: 328 GNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS- 386
           G+IP  LG+L+ L  +I+  N L G IP E   L +L+ L +  N+++G +P+     + 
Sbjct: 465 GSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTK 524

Query: 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN 446
           +  + LS N              L+G IP  +G LS L+ L LG+N++ G +P +L    
Sbjct: 525 LNWISLSNNQ-------------LSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 447 QLQLLDLSNNSLHGSIPPCFDNTT-------------LYESYNNSSSLDEKFEISFF--I 491
            L  LDL+ N L+GSIPP     +             +Y   + S        +  F  I
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI 631

Query: 492 EGPQGD-FTTK---NIAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQT 541
              Q D  +T+   N   +Y+G      +       L LS NKL G IP ++G +  +  
Sbjct: 632 RQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSI 691

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
           LNL +N+L+G+IP     LK++  LDLSYN+ NG IP+ L  L  L    ++ NNLSG I
Sbjct: 692 LNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMI 751

Query: 602 LEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA---SIGNERDDNLIDMDSFFIT 658
            E +A F TF    +  N+ LCG PLPI  S    S+A      + R  +L    +  + 
Sbjct: 752 PE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRRQASLAGSVAMGLL 809

Query: 659 FTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
           F+   +  IF ++I+       RR+    +E ++
Sbjct: 810 FS---LFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  193 bits (490), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 207/665 (31%), Positives = 305/665 (45%), Gaps = 87/665 (13%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           M   +GN    +I  S+  L++L  L+L+GN L G I  ++F +L +L+ L + EN ++ 
Sbjct: 196 MFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIP-RDFGNLLNLQSLVLTENLLEG 254

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYN-----KIDNLVVPQELRLSDNHF 115
            + +              +I    S   LE+ D         ++ NLV  Q LR+  N  
Sbjct: 255 DIPA--------------EIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKL 300

Query: 116 --RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFP 173
              IP SL   F  ++L       N +   I+E          L+ L+L S+   G  FP
Sbjct: 301 TSSIPSSL---FRLTQLTHLGLSENHLVGPISEEIGFLE---SLEVLTLHSNNFTG-EFP 353

Query: 174 KFLYHQHDLEYVRLSHIKMNGEFPN--WLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231
           + + +  +L  + +    ++GE P    LL N   L  L   ++ L GP    I +   L
Sbjct: 354 QSITNLRNLTVLTVGFNNISGELPADLGLLTN---LRNLSAHDNLLTGPIPSSISNCTGL 410

Query: 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 291
            +LD+S+N + G IP   G +  +L   +I  N   G IP    N   L+ L +++N LT
Sbjct: 411 KLLDLSHNQMTGEIPRGFGRM--NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLT 468

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLKEG-------------LYLTNNSLSGNIPGWLGNLT 338
           G + + L      L+ L +S NSL                LYL +N  +G IP  + NLT
Sbjct: 469 GTL-KPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
            L  + M  N LEGPIP E   +  L +LD+S+N  SG +P+ F  L     +LS     
Sbjct: 528 LLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLE-SLTYLS----- 581

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL-CELNQLQL-LDLSNN 456
                 L  N  NGSIP  +  LS L+   +  N L G +P +L   L  +QL L+ SNN
Sbjct: 582 ------LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNN 635

Query: 457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
            L G+IP       + +  + S++L       F    P+     KN+             
Sbjct: 636 LLTGTIPKELGKLEMVQEIDLSNNL-------FSGSIPRSLQACKNVFT----------- 677

Query: 517 GLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
            L  S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS N L G
Sbjct: 678 -LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTG 736

Query: 576 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPAT 635
           +IP  L  L TL+   +A NNL G + E +  F   N S   GNT LCG   P+   P T
Sbjct: 737 EIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KPCT 793

Query: 636 MSEAS 640
           + + S
Sbjct: 794 IKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 233/801 (29%), Positives = 338/801 (42%), Gaps = 185/801 (23%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN----- 56
           L+LSGNS    +   L+ L  L  L+L+ N   GS+    F SL  L  LD+  N     
Sbjct: 118 LDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGE 177

Query: 57  ---KIDKFVVSKELYLDDTGFKGTLDI-----------------------REFDSFNNLE 90
              +I K      LY+    F G +                         +E     +L 
Sbjct: 178 IPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLA 237

Query: 91  VLDMSYNKID----------------NLV-------VPQEL---------RLSDNHFRIP 118
            LD+SYN +                 NLV       +P EL          LS N    P
Sbjct: 238 KLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGP 297

Query: 119 ISLEPLFNHSRLKIFHAKNNQMNA---------EITESHSLTAPNFQ------------L 157
           + LE   +   L  F A+ NQ++          ++ +S  L    F             L
Sbjct: 298 LPLE--LSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPML 355

Query: 158 QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL 217
           + LSL+S+   G + P+ L     LE + LS   ++G     + +  + L  L L N+ +
Sbjct: 356 KHLSLASNLLSG-SIPRELCGSGSLEAIDLSGNLLSGTIEE-VFDGCSSLGELLLTNNQI 413

Query: 218 AGP----FW-LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS 272
            G      W LP+ +      LD+ +NN  G IP  +     +L  F  S N L+G +P+
Sbjct: 414 NGSIPEDLWKLPLMA------LDLDSNNFTGEIPKSLWKST-NLMEFTASYNRLEGYLPA 466

Query: 273 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332
             GN   L+ L LS+NQLTGEIP  +           L++ S+   L L  N   G IP 
Sbjct: 467 EIGNAASLKRLVLSDNQLTGEIPREIG---------KLTSLSV---LNLNANMFQGKIPV 514

Query: 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC----FHPLSIE 388
            LG+ T L  + +  N+L+G IP +   L  LQ L +S NN+SGS+PS     FH   IE
Sbjct: 515 ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFH--QIE 572

Query: 389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
              LS   L      DLSYN L+G IP+ +GE   L  + L +N+L GE+P  L  L  L
Sbjct: 573 MPDLS--FLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNL 630

Query: 449 QLLDLSNNSLHGSIPPCFDNTTLYESYN-NSSSLDEKFEISFFIEGPQGDFTTKNIAYIY 507
            +LDLS N+L GSIP    N+   +  N  ++ L+     SF + G              
Sbjct: 631 TILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGS------------- 677

Query: 508 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL------------------ 549
                  L  L L+ NKL G +P  +GNL  +  ++LS+NNL                  
Sbjct: 678 -------LVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLY 730

Query: 550 ------TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603
                 TG IPS   NL  +E LD+S N L+G+IP ++  L  LE  ++A NNL GE+  
Sbjct: 731 IEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEV-P 789

Query: 604 WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSY 663
                   +K+   GN  LCG                +G+   D  I+       +  + 
Sbjct: 790 SDGVCQDPSKALLSGNKELCG--------------RVVGS---DCKIEGTKLRSAWGIAG 832

Query: 664 VIVIFAIVIILYVNSYWRRRW 684
           +++ F I++ ++V S   RRW
Sbjct: 833 LMLGFTIIVFVFVFSL--RRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  189 bits (480), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 200/672 (29%), Positives = 297/672 (44%), Gaps = 100/672 (14%)

Query: 85  SFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEI 144
           S  +L  +D+SYN            LSD   +IP S    F  S LK     +N ++ + 
Sbjct: 173 SLQSLTTVDLSYNI-----------LSD---KIPESFISDFPAS-LKYLDLTHNNLSGDF 217

Query: 145 TESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN---WLL 201
           ++       N    SLS ++  GD   FP  L +   LE + +S   + G+ PN   W  
Sbjct: 218 SDLSFGICGNLTFFSLSQNNLSGD--KFPITLPNCKFLETLNISRNNLAGKIPNGEYWGS 275

Query: 202 ENNTKLATLFLVNDSLAG--PFWLPIHSHKRLGILDISNNNIRGHIPVEI---------- 249
             N K   L L ++ L+G  P  L +   K L ILD+S N   G +P +           
Sbjct: 276 FQNLK--QLSLAHNRLSGEIPPELSLLC-KTLVILDLSGNTFSGELPSQFTACVWLQNLN 332

Query: 250 -------GDVLPSL--------YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEI 294
                  GD L ++        Y++ ++ N + GS+P S  N   L++LDLS+N  TG +
Sbjct: 333 LGNNYLSGDFLNTVVSKITGITYLY-VAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNV 391

Query: 295 PEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI 354
           P           F  L ++ + E + + NN LSG +P  LG    L  I +  N L GPI
Sbjct: 392 PSG---------FCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPI 442

Query: 355 PVEFCQLYSLQILDISDNNISGSLPS--CFHPLSIEQVHLSKNMLHRQLKRD-------- 404
           P E   L +L  L +  NN++G++P   C    ++E + L+ N+L   +           
Sbjct: 443 PKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMI 502

Query: 405 ---LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
              LS N L G IP  IG LS+L+ L LG+N+L G VP QL     L  LDL++N+L G 
Sbjct: 503 WISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGD 562

Query: 462 IP-----------PCFDNTTLYESYNNSSSLDEKFEISFF-IEGPQGDFTTK-------N 502
           +P           P   +   +    N    D +        EG + +   +        
Sbjct: 563 LPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCP 622

Query: 503 IAYIYQGKVLSLLSG----LY--LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 556
              IY G  +   S     +Y  +S N + G IPP  GN+  +Q LNL +N +TG IP +
Sbjct: 623 ATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDS 682

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY 616
           F  LK I  LDLS+N L G +P  L  L  L    V+ NNL+G I  +  Q  TF  S Y
Sbjct: 683 FGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPI-PFGGQLTTFPVSRY 741

Query: 617 EGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFT-TSYVIVIFAIVIILY 675
             N+ LCG+PL  C S       S  + +   +       I F+   +V+++ A+  +  
Sbjct: 742 ANNSGLCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRK 801

Query: 676 VNSYWRRRWFYF 687
           V    ++R  Y 
Sbjct: 802 VQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 218/725 (30%), Positives = 331/725 (45%), Gaps = 94/725 (12%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-- 59
           LNLS    +  +  S+  L  L+ L+L+ N L G I  KE  +   LE L +  N+ D  
Sbjct: 78  LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIP-KEIGNCSSLEILKLNNNQFDGE 136

Query: 60  ------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDN 113
                 K V  + L + +    G+L +                 +I NL+   +L    N
Sbjct: 137 IPVEIGKLVSLENLIIYNNRISGSLPV-----------------EIGNLLSLSQLVTYSN 179

Query: 114 HF--RIPISLEPLFNHSRLKIFHAKNNQMN----AEITESHSLTAPNFQLQSLSLSSSYG 167
           +   ++P S+    N  RL  F A  N ++    +EI    SL         LS     G
Sbjct: 180 NISGQLPRSIG---NLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLS-----G 231

Query: 168 DGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHS 227
           +    PK +     L  V L   + +G  P  +  N T L TL L  + L GP    +  
Sbjct: 232 E---LPKEIGMLKKLSQVILWENEFSGFIPREI-SNCTSLETLALYKNQLVGPIPKELGD 287

Query: 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSN 287
            + L  L +  N + G IP EIG++  ++ + + S NAL G IP   GN++ L+LL L  
Sbjct: 288 LQSLEFLYLYRNGLNGTIPREIGNLSYAIEI-DFSENALTGEIPLELGNIEGLELLYLFE 346

Query: 288 NQLTGEIPEHLAVGCVNLQFLMLSNNSLK----------EGLY---LTNNSLSGNIP--- 331
           NQLTG IP  L+    NL  L LS N+L            GL+   L  NSLSG IP   
Sbjct: 347 NQLTGTIPVELST-LKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQV 390
           GW  +L W++   M +NHL G IP   C   ++ IL++  NN+SG++P+      ++ Q+
Sbjct: 406 GWYSDL-WVLD--MSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQL 462

Query: 391 HLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 439
            L++N L  +              +L  N   GSIP  +G  S L  L L  N   GE+P
Sbjct: 463 RLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELP 522

Query: 440 VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYN---NSSSLDEKFEISFFIEGPQG 496
            ++  L+QL  L++S+N L G +P    N  + +  +   N+ S     E+    +    
Sbjct: 523 REIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELL 582

Query: 497 DFTTKNIAYIYQGKV--LSLLSGLYLSCNKLIGHIPPQIGNLTRIQ-TLNLSYNNLTGLI 553
             +  N++      +  LS L+ L +  N   G IP ++G+LT +Q  LNLSYN LTG I
Sbjct: 583 KLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEI 642

Query: 554 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNK 613
           P   SNL  +E L L+ N L+G+IP     L +L  ++ +YN+L+G I          + 
Sbjct: 643 PPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPI----PLLRNISM 698

Query: 614 SSYEGNTFLCGLPLPICRS----PATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFA 669
           SS+ GN  LCG PL  C        + S    G  R   +I + +  I   +   +++ A
Sbjct: 699 SSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVS---LMLIA 755

Query: 670 IVIIL 674
           +++ L
Sbjct: 756 LIVYL 760

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 215/747 (28%), Positives = 323/747 (43%), Gaps = 76/747 (10%)

Query: 2   LNLSGNSFNNTI-LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN---- 56
           L+L       T+ L++LT LS+LRSL L GN+   S       S   LE LD+  N    
Sbjct: 81  LDLRNGGLTGTLNLNNLTALSNLRSLYLQGNNF--SSGDSSSSSGCSLEVLDLSSNSLTD 138

Query: 57  -KIDKFVVSKELYLDDTGF-----KGTLDIREFDSFNNLEVLDMSYNKIDNLV------- 103
             I  +V S  L L    F      G L      S   +  +D+S N+  + +       
Sbjct: 139 SSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIAD 198

Query: 104 VPQELR---LSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ-LQS 159
            P  L+   LS N+     S         L +F    N ++    +   ++  N + L++
Sbjct: 199 FPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISG---DRFPVSLSNCKLLET 255

Query: 160 LSLSSSYGDG-VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA 218
           L+LS +   G +    +  +  +L  + L+H   +GE P  L      L  L L  +SL 
Sbjct: 256 LNLSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLT 315

Query: 219 GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMK 278
           G       S   L  L++ NN + G     +   L  +    +  N + GS+P S  N  
Sbjct: 316 GQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCS 375

Query: 279 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
            L++LDLS+N+ TGE+P           F  L ++S+ E L + NN LSG +P  LG   
Sbjct: 376 NLRVLDLSSNEFTGEVPSG---------FCSLQSSSVLEKLLIANNYLSGTVPVELGKCK 426

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS--CFHPLSIEQVHLSKNM 396
            L  I +  N L G IP E   L  L  L +  NN++G +P   C    ++E + L+ N+
Sbjct: 427 SLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNL 486

Query: 397 LHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL 445
           L   L              LS NLL G IP  IG+L +L+ L LG+N+L G +P +L   
Sbjct: 487 LTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNC 546

Query: 446 NQLQLLDLSNNSLHGSIP-----------PCFDNTTLYESYNNSSSLDEKFEISFF-IEG 493
             L  LDL++N+L G++P           P   +   +    N    D +        EG
Sbjct: 547 KNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEG 606

Query: 494 PQGD-------FTTKNIAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQ 540
            + +         +     IY G  + + S       L LS N + G IP   G +  +Q
Sbjct: 607 IRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQ 666

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 600
            LNL +N LTG IP +F  LK I  LDLS+N L G +P  L  L  L    V+ NNL+G 
Sbjct: 667 VLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGP 726

Query: 601 ILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFT 660
           I  +  Q  TF  + Y  N+ LCG+PLP C S +  + +    ++      M +  +   
Sbjct: 727 I-PFGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVFSF 785

Query: 661 TSYVIVIFAIVIILYVNSYWRRRWFYF 687
              V++I A+     V    ++R  Y 
Sbjct: 786 MCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	710
224142481	781	predicted protein [Populus trichocarpa]	0.969	0.880	0.462	1e-160
255581263	912	serine-threonine protein kinase, plant-t	0.945	0.735	0.452	1e-158
224112245	876	predicted protein [Populus trichocarpa]	0.932	0.755	0.428	1e-144
224123984	1016	predicted protein [Populus trichocarpa]	0.978	0.684	0.404	1e-137
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.969	0.469	0.386	1e-135
224142723	923	predicted protein [Populus trichocarpa]	0.912	0.702	0.400	1e-135
224073436	1014	predicted protein [Populus trichocarpa]	0.977	0.684	0.403	1e-134
224073452	710	predicted protein [Populus trichocarpa]	0.853	0.853	0.432	1e-134
224073382	1309	predicted protein [Populus trichocarpa]	0.912	0.495	0.412	1e-134
224134597	947	predicted protein [Populus trichocarpa]	0.850	0.637	0.422	1e-134

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 353/763 (46%), Positives = 469/763 (61%), Gaps = 75/763 (9%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L LS N  N++ LS L  LSSL+ LNL+ N L+GSID+K    L+ L+ELDI       
Sbjct: 32  ILELSFNKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDIS------ 85

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYN---------KIDNLVVPQELRLS 111
                  Y D  G    L      + NNL+VLD+S+N         +I +L   ++L+LS
Sbjct: 86  -------YNDLNGLPSCLT-----NLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLS 133

Query: 112 DNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVT 171
           DNHF+IPISL P FN S LK  +  +N++       H+L  P FQLQ LSL+  +G G T
Sbjct: 134 DNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLAC-HGFGGT 191

Query: 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231
           FPKFLY+QHDL++V LSHIK+ GEFP+WLL+NNTKL  L+LVN SL+G   LP  SH  L
Sbjct: 192 FPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNL 251

Query: 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 291
             LDIS N+I+  IP +IG   P L   N+S N   GSIPSS  NM  L +LDLSNN L+
Sbjct: 252 SRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLS 311

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLK-------------EGLYLTNNSLSGNIPGWLGNLT 338
           G IPE L  GC++L+ L+LSNN LK               L L+ N L+G +P  L N +
Sbjct: 312 GNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGS 371

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNML 397
            L  + +  N+L G IP     + SLQ LD+S+NN+ GSLPS F    ++ +V+LSKN L
Sbjct: 372 RLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMTEVYLSKNKL 431

Query: 398 HRQL-----------KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN 446
              L           + DLS+N   G IP+ IG L +LS L+LG+NNLEG++P QLC+L 
Sbjct: 432 EGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLE 491

Query: 447 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ----------- 495
           +L L+DLS+N L G I PC   T+ ++    +S       +     GPQ           
Sbjct: 492 KLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDP 551

Query: 496 -----GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550
                 +FTTK+I+Y ++G +L  +SG+ LSCN L G IP ++GNL+ IQ LNLS+N+LT
Sbjct: 552 SMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLT 611

Query: 551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFAT 610
           G IP TFSNLK IESLDLSYN LNG+IP QL++L  L  FSVA+NNLSG+  E  AQF+T
Sbjct: 612 GPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFST 671

Query: 611 FNKSSYEGNTFLCGLPLP--ICRS--PATMSEASIGNERDDNLIDMDSFFITFTTSYVIV 666
           FNKS YEGN  LCG PL     R+  P+ +  +    + ++ +IDM++F +TF+ +Y++V
Sbjct: 672 FNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMV 731

Query: 667 IFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNL-IPTRF 708
           +  I  +LY+N  WRR WFYF+   I  CYYF+VDNL +P RF
Sbjct: 732 LLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 332/734 (45%), Positives = 447/734 (60%), Gaps = 63/734 (8%)

Query: 11  NTILSSLTHLSSLRSLNLNGNSLEGSI-DVKEFDSLRDLEELDIGENKIDKFVVSKELYL 69
           N+ L ++  ++SL+ L+L+G  L G++ +V+    L  L  LD+  N+    +       
Sbjct: 191 NSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGIL------- 243

Query: 70  DDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSR 129
                     ++  D  +N  V D+S + +  L    +L +S+NHF++P SL P FNHS 
Sbjct: 244 -PWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSN 302

Query: 130 LKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSH 189
           LK    +NN +  E  E HS  AP FQL S+ + S YG   TFP FLYHQ++L++V LSH
Sbjct: 303 LKHIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGICGTFPNFLYHQNNLQFVDLSH 358

Query: 190 IKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEI 249
           + + GEFPNWLL NNT+L  L LVN+SL+G   LP+H H  L  LDISNN++  HIP+EI
Sbjct: 359 LSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEI 418

Query: 250 GDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309
           G  LP L + N+S N  DGSIPSSFGNM  L++LDLSNNQL+G IPEHLA GC +L  L+
Sbjct: 419 GTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLI 478

Query: 310 LSNNSLKEGLY------------------------------------LTNNSLSGNIPGW 333
           LSNNSL+  ++                                    L++N LSG IPGW
Sbjct: 479 LSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKSALSIMDLSDNHLSGMIPGW 538

Query: 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 393
           +GNL++L ++I+  N L+GPIPVEFCQL+ L++LD+++N++SG LPSC  P SI  VHLS
Sbjct: 539 IGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLS 598

Query: 394 KNML-----------HRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442
           +NM+           H  +  DLS N + G IP  IG ++ L  L L  N  +GE+P Q+
Sbjct: 599 QNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQI 658

Query: 443 CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502
           C L QL L+ L++N+L GSIP C       +S              +++      FTTK 
Sbjct: 659 CGLYQLSLIVLADNNLSGSIPSCLQ-LDQSDSLAPDVPPVPNPLNPYYLPVRPMYFTTKR 717

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562
            +Y YQGK+LS +SG+  SCNKL G IPP++GN + I +LNLSYN  TG IPSTFSNLK 
Sbjct: 718 RSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQ 777

Query: 563 IESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL 622
           IESLDLSYN LNG IP QL+ELK L  FSVA+NNL G+  + T QFATF  SSYEGN  L
Sbjct: 778 IESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNL 837

Query: 623 CGLPLPICRSPATMSEASIGNERDD--NLIDMDSFFITFTTSYVIVIFAIVIILYVNSYW 680
           CGLPLP   +    S A   +  D+  N +DM++F+ +F  SY  VI  + ++LY+N  W
Sbjct: 838 CGLPLPKSCTEREASSAPRASAMDEESNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQW 897

Query: 681 RRRWFYFVEMWITT 694
           RR WF FV++ I++
Sbjct: 898 RRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 317/739 (42%), Positives = 446/739 (60%), Gaps = 77/739 (10%)

Query: 4   LSGNSFNNTILSSLTHLSSLRSLNLNG-----NSLE--GSIDVKEFDSL----------- 45
           L+ N F  TIL  L +LSSL  L LNG     NS++  G++   ++ SL           
Sbjct: 157 LNDNDFKGTILE-LQNLSSLEKLYLNGCFLDENSIQILGALSSLKYLSLYEVSGIVPSQG 215

Query: 46  -----RDLEELDIGENKIDKFVVS--------KELYLDDTGFKGTLDIREFDSFNNLEVL 92
                ++LE L    + +D  ++         K L L      G L I    + NNL+ L
Sbjct: 216 FLNILKNLEHLYSSNSTLDNSILQSIGTITSLKILELVKCRLNGQLPIG-LCNLNNLQEL 274

Query: 93  DMSYNKIDNLVVP--------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEI 144
           DM  N I   ++P        Q L LS NH +IP+SL PL+N S+LK FH  +N++ AE 
Sbjct: 275 DMRDNDISGFLIPCLANLTSLQRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE- 333

Query: 145 TESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENN 204
            + H+L +P FQLQSL LS+       FP+FLYHQ +L+ + L++I+M G+FPNWL+ENN
Sbjct: 334 EDDHNL-SPKFQLQSLYLSNHGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENN 392

Query: 205 TKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMN 264
           T L  L+L N SL+GPF LP +SH  L IL IS N ++G IP EIG  LP L V ++S N
Sbjct: 393 TYLKNLYLENCSLSGPFLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHN 452

Query: 265 ALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG------ 318
             +GSIPSS  NM  L+ LDLSNN LTG IP+HL        FL+LSNNSL+        
Sbjct: 453 GFNGSIPSSLSNMSLLRDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSMS 512

Query: 319 -------LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD 371
                  L ++NN+LS  IPGW+ ++++L  + +  N+  GP+P       +L+ + +S 
Sbjct: 513 NCSSLQLLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSR 572

Query: 372 NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH 431
           N + G +   F+  S              L  DLS+N L G+IP+WIG LS+L +L+L +
Sbjct: 573 NKLQGLITKAFYNFST------------LLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSY 620

Query: 432 NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFI 491
           N LEGE+P+QLC+L+ L L+DLS+N L G+I  C  +   + +  +++ ++   +   ++
Sbjct: 621 NKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCMTSLAPFSALTDATIVETSQQ---YL 677

Query: 492 EGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG 551
           E     FTTKN++ IY+G ++ L SG+  SCN   G IPP+I NL++I+ LNLS+N+L G
Sbjct: 678 E-----FTTKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIG 732

Query: 552 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATF 611
            IP TFS LK IESLDLS+NKL+G+IP QL EL +LE+FSVA+NNLSG+     AQFATF
Sbjct: 733 PIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATF 792

Query: 612 NKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAI 670
            +S Y+ N FLCG PLP IC +    S  S+ NE +   IDM+ F+++F  +Y++V+  I
Sbjct: 793 EESCYKDNPFLCGEPLPKICGASMLPSPTSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVI 852

Query: 671 VIILYVNSYWRRRWFYFVE 689
           V +LY+N YWRR WF+F E
Sbjct: 853 VAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 330/815 (40%), Positives = 450/815 (55%), Gaps = 120/815 (14%)

Query: 2    LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKE--FDS--------------- 44
            L+L GN +N++I SSLT  SSL+SL+L+ N L GS  +    F+S               
Sbjct: 195  LHLRGNQYNDSIFSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPL 254

Query: 45   --------LRDLEELDIGENKIDKFVVSK---------ELYLDDTGFKGTLDIREFDSFN 87
                    L  L+ L  GE  ++  + ++         +L+L +   +G+L    F + +
Sbjct: 255  NFLHNIGVLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLEGSLP-DCFKNLS 313

Query: 88   NLEVLDMSYNK---------IDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNN 138
            +L++LD+S N+         + NL+  + + LS+NHF++PIS++P  NHS L+ F + NN
Sbjct: 314  SLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNN 373

Query: 139  QMNAEITESHSLTAPNFQLQ--SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEF 196
            ++  E    H L  P FQL   SLS SSS    V  P FLY+QHDL  + LS     G F
Sbjct: 374  RLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMF 432

Query: 197  PNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSL 256
            P+WLL+NNT+L  LFL  +S  G   L  H +  +  +DISNNN+ G IP  I  +  +L
Sbjct: 433  PSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNL 492

Query: 257  YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT---------------------GEIP 295
            +   ++ N L G IPS  GN   L +LDLSNNQL+                     G++P
Sbjct: 493  WTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFITLTFLKLSNNNLGGQLP 552

Query: 296  EHLAVGCVNLQFLMLSNN--------------SLKEGLYLTNNSLSGNIPGWLGNLTWLI 341
              + V    L +L LS+N              ++   L L+NN  SG +P W  NLT + 
Sbjct: 553  ASM-VNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIF 611

Query: 342  HIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQL 401
             I + +NH  GPIPVEFC+L  L+ LD+SDNN+  S+PSCF+P  I  VHLSKN L   L
Sbjct: 612  AIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPL 671

Query: 402  KR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL 450
                         DL  N   GSI +WIG LS LS L+L  NN +GE  VQLC L QL +
Sbjct: 672  TYGFYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSI 731

Query: 451  LDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEIS------FFIEGPQG-------- 496
            LD+S N L G +P C  N +  ESY   +S+D  F          + E  Q         
Sbjct: 732  LDVSQNQLSGPLPSCLGNLSFKESYE-KASVDFGFHFGSTPIEKAYYEFNQTRALLGSSY 790

Query: 497  ---------DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547
                     +FT K++ Y Y+GK+LS +SG+ LS NK  G IPP++GNL+ +  LNLS+N
Sbjct: 791  IPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHN 850

Query: 548  NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQ 607
            NLTG IP+TFSNLK IES DLSYN L+G IPH+L E+ TLEVFSVA+NNLSGE  E   Q
Sbjct: 851  NLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQ 910

Query: 608  FATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER--DDNLIDMDSFFITFTTSYVI 665
            F TF++SSYEGN FLCG PL    S        + N++  DD  IDM+ F+I+    Y++
Sbjct: 911  FGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIV 970

Query: 666  VIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVV 700
            V+  I  +LY+N YWR  WF F++  I TC+ F++
Sbjct: 971  VVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 318/822 (38%), Positives = 446/822 (54%), Gaps = 134/822 (16%)

Query: 1    MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
            +L+L  N FN + L SL  LS L+ L L GN LEGS+ ++E ++LR+LE LD+    I  
Sbjct: 647  VLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISS 706

Query: 61   FVVS----------------------------------KELYLDDTGFKGTLDIREFDSF 86
             ++                                   +EL L D GF+G++      + 
Sbjct: 707  SILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVS-PCLGNL 765

Query: 87   NNLEVLDMSYNKIDN---------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFH--A 135
             +L  LD+S N+            L+  + L LS N F+    +     HS+L++     
Sbjct: 766  TSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLIC 825

Query: 136  KNNQMNAEITESHSLT-APNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNG 194
             NN +   + ES   T  P+FQL+   LSS      + P FL++QHDL  V LS+  +  
Sbjct: 826  GNNTL---LLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEE 882

Query: 195  EFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLP 254
            +FP WL++NNT+L  L L N+SL G F LP   +     +DISNN ++G +P  I   LP
Sbjct: 883  DFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLP 942

Query: 255  SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 314
            +L   N+S N+ +GSIP SFG M+ L  LDLSNN  TG IPE LA+GC +L++L+LS N 
Sbjct: 943  NLMFLNVSRNSFEGSIP-SFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKND 1001

Query: 315  LK------------------------------------EGLYLTNNSLSGNIPGWLGNLT 338
            L                                     E LY+++NS+SG +PGW+GN++
Sbjct: 1002 LHGQMFPRVSNLPSLRHLELDDNHFSGKIPDLSNSSGLERLYVSHNSISGKLPGWIGNMS 1061

Query: 339  WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
             L  ++MP N LEGPIPVEFC L +L++LD+S+NN+SGSLPSCF P  +  VHL +N L 
Sbjct: 1062 NLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLT 1121

Query: 399  RQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQ 447
              L +           D+  N L+G IPDWI   S LS L+L  N+ +G++P QLC+L++
Sbjct: 1122 GPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSK 1181

Query: 448  LQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP------------- 494
            + +LDLS NSL G IP C +       + +      KF I  +   P             
Sbjct: 1182 ITILDLSYNSLSGHIPSCLNKIQFRTGFRSG-----KFSIISYFPSPGFSSYLYHSQHIE 1236

Query: 495  ----------------QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTR 538
                              +FTTKN    Y+G  L  ++G+ LS NKL G IPP+IGNL++
Sbjct: 1237 LSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQ 1296

Query: 539  IQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
            +  LNLS+N LTG IP+ FS LK IESLDLSYN L G IP +L EL  L VFSVAYNNLS
Sbjct: 1297 VHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLS 1356

Query: 599  GEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFIT 658
            G+I E TAQF TF ++SY GN +LCG  L   ++ +   E +   E +  L D D F+++
Sbjct: 1357 GKIPEMTAQFGTFLENSYVGNPYLCGSLLR--KNCSRAEEEAEIEEGEKGLTDRDIFYVS 1414

Query: 659  FTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVV 700
            F  SYV+V+  +  +LY+N  WR++WF+ +++ IT C  FV+
Sbjct: 1415 FGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 319/797 (40%), Positives = 437/797 (54%), Gaps = 149/797 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVK--------------------- 40
           L+L  N F+N+ILS +  +SSL+SL L+ N +EG ID+K                     
Sbjct: 172 LDLGYNRFDNSILSFVEGISSLKSLYLDYNRVEGLIDLKGSSFQFLGSFPNLTRLYLEDN 231

Query: 41  -------EFDSLRDLEELDIGENKIDKFVVSK--------ELYLDDTGFKGTLDIREFDS 85
                  EF +L  LE L +  + +D+  +           L+L+D G  G +  R F +
Sbjct: 232 DFRGRILEFQNLSSLEYLYLDGSSLDEHSLQGLATPPSLIHLFLEDLG--GVVPSRGFLN 289

Query: 86  FNNLEVLDMSYNKIDNLV-----------------------VP----------------- 105
             NLE LD+  + +DN +                       +P                 
Sbjct: 290 LKNLEYLDLERSSLDNSIFHTIGTMTSLKILYLTDCSLNGQIPTAQDKLHMYHNDLSGFL 349

Query: 106 ----------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF 155
                     Q L LS NH +IP+SL PL+N S+L  F    N++ AE  E H+L+ P F
Sbjct: 350 PPCLANLTSLQHLDLSSNHLKIPVSLSPLYNLSKLNYFDGSGNEIYAE-EEDHNLS-PKF 407

Query: 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVND 215
           QL+ L LSS       FPKFLYHQ +L+YV L++I+M GEFPNWL+ENNT L  L L N 
Sbjct: 408 QLEFLYLSSRGQGPGAFPKFLYHQVNLQYVDLTNIQMKGEFPNWLIENNTYLQELHLENC 467

Query: 216 SLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 275
           SL GPF LP +SH  L  L IS N  +G IP EIG  LP L V  +S N  +G+IPSS G
Sbjct: 468 SLTGPFLLPKNSHVNLLFLSISVNYFQGQIPSEIGAYLPRLEVLLMSDNGFNGTIPSSLG 527

Query: 276 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335
           NM  LQ+LD+  N LTG I                          L+NNSL G IPGW+G
Sbjct: 528 NMSSLQVLDMFANVLTGRI--------------------------LSNNSLQGQIPGWIG 561

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSK 394
           N++ L  + +  N+  GP+P  F     L+ + +S N + G +   F+  S IE +    
Sbjct: 562 NMSSLEFLDLSGNNFSGPLPPRFGTSSKLRYVSLSRNKLHGPIAIAFYNSSKIEAL---- 617

Query: 395 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 454
                    DLS+N L G IP+WIG  S L  L+L +NN EGE+P+QLC L+QL L+DLS
Sbjct: 618 ---------DLSHNDLTGRIPEWIGRQSNLRFLLLSYNNFEGEIPIQLCRLDQLTLIDLS 668

Query: 455 NNSLHGSIPPCFDNTT---LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKV 511
           +N L G+I     +++   +  S+++ SS  + FE           FTTKN++  Y+G +
Sbjct: 669 HNYLFGNILSWMISSSPLGISNSHDSVSSSQQSFE-----------FTTKNVSLSYRGDI 717

Query: 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
           +    G+  S N   G IPP+IGNL+ I+ LNLS+N+LTG IP TFSNLK IESLDLSYN
Sbjct: 718 IRYFKGIDFSRNNFTGEIPPEIGNLSGIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYN 777

Query: 572 KLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP-IC 630
           KL+G+IP +L EL  LE FSVA+NNLSG+     AQFATF +S Y+ N FLCG PLP IC
Sbjct: 778 KLDGEIPPRLTELFFLEFFSVAHNNLSGKTPTRVAQFATFEESCYKENPFLCGEPLPKIC 837

Query: 631 R--SPATMSEASIGNERDDN--LIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFY 686
               P + + +S      DN   +DM+ F++TF  +Y++V+  + ++ Y+N YWR+ WFY
Sbjct: 838 GVVMPPSPTPSSTNKNNKDNCGFVDMEVFYVTFGVAYIMVLLVMGVVFYINPYWRQAWFY 897

Query: 687 FVEMWITTCYYFVVDNL 703
           F+E+ +  CYYF++DNL
Sbjct: 898 FIEVSLNNCYYFIMDNL 914

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 335/830 (40%), Positives = 451/830 (54%), Gaps = 136/830 (16%)

Query: 2    LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVK-EFDSLRDLEELDIGENK--- 57
            L+LS N FN++ILS L  LS L+SLNL+GN L GS  V   F +   LEEL +       
Sbjct: 179  LDLSYNIFNDSILSHLRGLSYLKSLNLSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPI 238

Query: 58   -----IDKFVVSKELYLDDTGFKGTL---------DIREFD---------------SFNN 88
                 I      K L + +    GTL         ++R+ D               + ++
Sbjct: 239  NFLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSS 298

Query: 89   LEVLDMSYNK---------IDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 139
            L++LD+S N+         + NL   + L LS+N F +PIS++P  NHS LK F ++NN+
Sbjct: 299  LQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNK 358

Query: 140  MNAEITESHSLTAPNFQLQSLSLS-SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN 198
            +  E     +L  P FQL    LS ++    V  P FLY+Q+D+  + LSH  +   FP+
Sbjct: 359  LVTEPAAFDNLI-PKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPS 417

Query: 199  WLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258
            WLL+NNT+L  L+L N+S  G   L  H +  +  LDISNNN+ G IP +I  + P+++ 
Sbjct: 418  WLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWS 477

Query: 259  FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-- 316
              ++ N   G IPS  GN+  L++LDLSNNQL+    E L      + FL LSNN+L   
Sbjct: 478  LRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQ 533

Query: 317  -----------EGLYL-------------------------TNNSLSGNIPGWLGNLTWL 340
                       E LYL                         ++N  SG +P WL N T L
Sbjct: 534  LPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGL 593

Query: 341  IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQ 400
            I I + +N+ +GPI  +FC+L  L+ LD+S+NN+SG +PSCF P  I  VHLS+N L   
Sbjct: 594  IAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGP 653

Query: 401  LK-----------RDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQ 449
            L             DL  N   GS P+WIG LS LS L+L  N+ +GE+PVQLC L QL 
Sbjct: 654  LTYGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLS 713

Query: 450  LLDLSNNSLHGSIPPCFDNTTLYESYNNSSS------LDEKFEISFF-IEGP-------- 494
            +LD+S N L G +P C  N T  ES   + +      L    E +++   GP        
Sbjct: 714  ILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYN 773

Query: 495  --QG----------DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
              +G          +FTTKN+ Y Y+GK LS +SG+ LS N  +G IPP+ G+L++I +L
Sbjct: 774  LRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSL 833

Query: 543  NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602
            NLS+NNLTG IP+TFSNLK IESLDLSYN LNG IP QL ++ TLEVFSVA+NNLSG   
Sbjct: 834  NLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTP 893

Query: 603  EWTAQFATFNKSSYEGNTFLCGLPL------------PICRSPATMSEASIGNERDDNLI 650
            E   QF TF++S YEGN FLCG PL            P+   P          + DD  I
Sbjct: 894  ERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFI 953

Query: 651  DMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVV 700
            DM+ F+I F   Y +V+  IV++LY++ YWRRRW YF+E  I TCYYFVV
Sbjct: 954  DMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 296/685 (43%), Positives = 394/685 (57%), Gaps = 79/685 (11%)

Query: 93  DMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA 152
           ++++  + NL+  + L LS+N F +PIS++P  NHS LK F ++NN++  E     +L  
Sbjct: 17  NIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSENNKLVTEPAAFDNLI- 75

Query: 153 PNFQLQSLSLSSSYGDGV--TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATL 210
           P FQL    LSSS         P FLY+Q DL  + LSH  + G FP+WLL+NNT+L  L
Sbjct: 76  PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQL 135

Query: 211 FLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSI 270
           +L ++S  G   L  H H  +  LDISNNN+ G IP +I  + P+L+   ++ N   G I
Sbjct: 136 YLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGCI 195

Query: 271 PSSFGNMKFLQLLDLSNNQLT---------------------GEIPEHLAVGCVNLQFLM 309
           PS  GN+  L  LDLSNNQL+                     G+IP  +      L FL 
Sbjct: 196 PSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWVLKLSNNNLGGKIPTSV-FNSSRLNFLY 254

Query: 310 LSNNS--------------LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 355
           L+ N+              +   L L+NN  SG +P    N + L  I +  NH +GPIP
Sbjct: 255 LNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNFSILGVIDLSGNHFKGPIP 314

Query: 356 VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK-----------RD 404
            +FC+   L+ LD+S+NN+SG +PSCF P  I  VHLSKN L   L             D
Sbjct: 315 RDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLSGPLTYAFFNSSYLVTMD 374

Query: 405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP 464
           L  N   GSIP+WIG LS LS L+L  N+ +GE+P+QLC L QL +LD+S+N L G +P 
Sbjct: 375 LRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLLEQLSILDVSHNQLSGPLPS 434

Query: 465 CFDNTTLYESYNNS------SSLDEKFEISFF-IEGPQ--------------------GD 497
           C  N T  +S   +        + E  E +++ I GP                      +
Sbjct: 435 CLGNLTFKKSDKKAILEVAYGFISESIEKAYYEIMGPPLVDSVDNLRNFFLFNFTEEVTE 494

Query: 498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTF 557
           FTTKN+ Y Y+GKVL+ + G+ LS N  IG IPP+ GNL++I ++NLS+NNLTG IP+TF
Sbjct: 495 FTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLSKILSVNLSHNNLTGSIPATF 554

Query: 558 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE 617
           SNL HIESLDLSYN LNG IP Q  E+ TLEVFSVA+NNLSG+  E   QF TF++S YE
Sbjct: 555 SNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNLSGKTPERIYQFGTFDESCYE 614

Query: 618 GNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDMDSFFITFTTSYVIVIFAIVIILY 675
           GN FLCG PLP  C   A +S+    +E+ DD  IDM+ F+I+F   Y +V+  I  +LY
Sbjct: 615 GNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLY 674

Query: 676 VNSYWRRRWFYFVEMWITTCYYFVV 700
           +N YWRRRW YF+E  I TCYYFVV
Sbjct: 675 INPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 318/771 (41%), Positives = 422/771 (54%), Gaps = 123/771 (15%)

Query: 15   SSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGF 74
            S    + +L+ L+L+GN+  GS+      +L  L+ LDI EN+                F
Sbjct: 566  SGWCEMKNLKQLDLSGNNFGGSLP-DCLGNLSSLQLLDISENQ----------------F 608

Query: 75   KGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFH 134
             G                +++++ + NL+  + L LS+N F +P S++P  NHS LK F 
Sbjct: 609  TG----------------NIAFSPLTNLISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFC 652

Query: 135  AKNNQMNAEITESHSLTAPNFQLQSLSLS-SSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 193
             +NN++  E      L  P FQL   SLS ++    V  P FLY+Q+ L ++ LSH  + 
Sbjct: 653  NENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEALNVEIPNFLYYQYHLRFLDLSHNNIT 711

Query: 194  GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253
            G FP+WLL+NNT+L  L+L  +S+ G   L  H + ++  LDISNNN+ G IP +I  + 
Sbjct: 712  GMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIF 771

Query: 254  PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313
            P+L    ++ N   G IPS  GNM  L +LDLSNNQL+    E L      + FL LSNN
Sbjct: 772  PNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTVKLELLTT----IWFLKLSNN 827

Query: 314  SL-------------KEGLYL-------------------------TNNSLSGNIPGWLG 335
            +L              E LYL                         +NN  SG +P W  
Sbjct: 828  NLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFV 887

Query: 336  NLTWLIHIIMPENHLEGPIPVEF-CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 394
            N T LI I + +NH EGPI   F C+L  L+ LD+S+NN+ G +PSCF+   I  VHLSK
Sbjct: 888  NSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSK 947

Query: 395  NMLHRQLK-----------RDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC 443
            N L   LK            DL  N   GSIP+W+G LS LS L+L  N+L+GE+PVQLC
Sbjct: 948  NRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLC 1007

Query: 444  ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE-------GPQG 496
             L QL +LD+S N L G +P C +N T  ES   +      F +  FIE       GP  
Sbjct: 1008 LLEQLSILDVSQNQLSGPLPSCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQ 1067

Query: 497  --------------------DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNL 536
                                +FTTKN+ Y Y+GK+LS +SG+ LS N  +G IPP+ GNL
Sbjct: 1068 VNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNL 1127

Query: 537  TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 596
            + I +LNLS+NNLTG IP+TFSNLK IESLDLSYN  NG IP QL E+ TLEVFSVA+NN
Sbjct: 1128 SEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNN 1187

Query: 597  LSGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGN------ERDDNL 649
            LSG+  E   QF TF++S YEGN FLCG PL   C     +S+  +        + DD  
Sbjct: 1188 LSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGF 1247

Query: 650  IDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVV 700
            IDM+ F+I+F+  Y +V+  I  +LY+N YWRRRW YF+E  I TCYYFVV
Sbjct: 1248 IDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 304/719 (42%), Positives = 412/719 (57%), Gaps = 115/719 (15%)

Query: 12  TILSSLTHLSSLRSLNLNGNSLEGSIDVKE-FDSLRDLEELDIGENKIDKFVVSKELYLD 70
           +I  ++  ++ L++LNL+G  L+G I + + F +L++LE LD+  N +D  +        
Sbjct: 311 SIFQAIRMMTFLKALNLHGCKLDGRIPLAQGFLNLKNLEHLDLSSNTLDNSIFQT----- 365

Query: 71  DTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDNHFRIPISLE 122
                G  D+      N+L+ L M  N +   + P        Q+L LS NH +IP+SL 
Sbjct: 366 ----IGLCDL------NHLQQLYMYDNDLSGFLPPCLANLTSLQQLDLSFNHLKIPMSLS 415

Query: 123 PLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDL 182
           PL+N S+LK F   +N++ AE  + HSL+ P FQL+S+SLS+       FPKFLYHQ  L
Sbjct: 416 PLYNLSKLKYFIGSDNEIYAE-EDDHSLS-PKFQLESISLSNRGQGAGAFPKFLYHQFSL 473

Query: 183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIR 242
           +   L++I++ GEFPNWL+ENNT L  L L N SL GPF LP +SH  L  L IS N  +
Sbjct: 474 QSFDLTNIQIKGEFPNWLIENNTHLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQ 533

Query: 243 GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 302
           G IP+EIG  LP L                        ++L +S+N   G IP       
Sbjct: 534 GQIPLEIGARLPGL------------------------EVLFMSSNGFNGSIP------- 562

Query: 303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY 362
                  L N S  +GL L+NNSL G IPGW+GN++                        
Sbjct: 563 -----FSLGNISSLKGLDLSNNSLQGQIPGWIGNMS------------------------ 593

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH-----------RQLKRDLSYNLLN 411
           SL+ L++S NN SG LP  F   ++  V+LS+N L                 DLS+N L 
Sbjct: 594 SLEFLNLSGNNFSGRLPPRFDTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLT 653

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT-- 469
           GSIP WI  LS L  L+L +NNLEGE+P++LC L+QL L+DLS+N   G+I     ++  
Sbjct: 654 GSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNILSWMISSHP 713

Query: 470 --TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
               Y+S +  SS  + FE           FTTKN++  Y+G ++   +G+  SCN  IG
Sbjct: 714 FPQQYDSNDYLSSSQQSFE-----------FTTKNVSLSYRGSIIQYFTGIDFSCNNFIG 762

Query: 528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
            IPP+IGNL+ I+ LNLS+N+LTG IP TFSNLK IESLDLSYNKL+G+IP QL+EL  L
Sbjct: 763 EIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFFL 822

Query: 588 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP-LPICRS--PATMSEASIGNE 644
           E FSVA+NNLSG+ L   AQFATF +S Y+ N FLCG P L IC +  P +    S  NE
Sbjct: 823 EFFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPLLKICGTTMPPSPMPTSTNNE 882

Query: 645 RDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITTCYYFVVDNL 703
            D   IDM+ F++TF  +Y++V+  I  ILY+N YWRR WF+F+E+ I  CYYF+VDNL
Sbjct: 883 DDGGFIDMEVFYVTFGVAYIMVLLVISAILYINPYWRRAWFHFIEVSINNCYYFLVDNL 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	710
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.692	0.552	0.336	7.8e-65
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.794	0.584	0.311	1.2e-61
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.874	0.636	0.316	6.1e-61
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.780	0.554	0.315	2.5e-59
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.863	0.655	0.318	1.9e-56
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.692	0.454	0.318	2.2e-56
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.694	0.542	0.320	1.5e-52
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.867	0.565	0.287	3.3e-46
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.774	0.439	0.290	3.2e-45
TAIR|locus:2020457	1166	BRL1 "BRI1 like" [Arabidopsis	0.647	0.394	0.272	1.5e-43

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 7.8e-65, Sum P(2) = 7.8e-65
 Identities = 177/526 (33%), Positives = 261/526 (49%)

Query:   182 LEYVRLSHIKMNGEFPNWLLE-NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN 240
             L ++ LS+ +  G  P+ +    N +   L   N S   P  L    +  L  L +S+N 
Sbjct:   375 LRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYS-LSWLKLSHNR 433

Query:   241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV 300
               G I  +  D   SL    +  N   G IP +  N++ L ++DLSNN LTG IP  L  
Sbjct:   434 FSGPIIRKSSDET-SLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLG- 491

Query:   301 GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ 360
                N  FL        E L ++NN L G IP  L N+ +L  + +  N L G +P+    
Sbjct:   492 ---NF-FL--------EVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSS 539

Query:   361 LYSLQILDISDNNISGSLPSCF----HPLSIEQVHLSKNM-LHRQLKRD----LSYNLLN 411
              Y   ILD+ +NN++GS+P         L +    LS N+ L R         L  N L 
Sbjct:   540 DYGY-ILDLHNNNLTGSIPDTLWYGLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLT 598

Query:   412 GSIPDWIGELSQLSHLILGHNNLEGEVP--VXXXXXXXXXXXXXXXXXXHGSIPPCFDNT 469
             G IP  +  LS +  L   HN L   +P  V                    S+   F   
Sbjct:   599 GKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNF--M 656

Query:   470 TLY-ESYNNSSSLDEKFEISFFIE-GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
              +Y E Y  S  + ++F + + ++   Q +F  K    +Y    L+ + GL LS N+L G
Sbjct:   657 EIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSG 716

Query:   528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
             +IP ++G+L R+++LNLS N+L+G IP +FSNL+ IESLDLS+NKL+G IP QL  L++L
Sbjct:   717 NIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSL 776

Query:   588 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDD 647
              VF+V+YNNLSG ++    QF TF + SY GN  LCG P        T+S      + D+
Sbjct:   777 VVFNVSYNNLSG-VIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDE 835

Query:   648 N-LIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
             + L+D+   + +  T+YV V+   ++ L  +S WRR WF  V+ +I
Sbjct:   836 SGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
 Identities = 197/632 (31%), Positives = 313/632 (49%)

Query:    98 KIDNLVVPQ-ELR---LSDNHF--RIPISLEPLFNHSRLKIFHAKNNQMNA-EITES-HS 149
             K+ + ++ Q +LR   LSDN+   ++P  L  L N+++LK+   +NN   + +I +S H+
Sbjct:   357 KVPHFLLHQKDLRHVDLSDNNISGKLPSWL--LANNTKLKVLLLQNNLFTSFQIPKSAHN 414

Query:   150 LTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLAT 209
             L   +              G  FP      H L Y+  S        P+  L N   +  
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIFP------H-LRYLNTSKNNFQENLPS-SLGNMNGIQY 466

Query:   210 LFLVNDSLAGPFWLP---IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNAL 266
             + L  +S  G   LP   ++    + IL +S+N + G I  E  +    L +F +  N  
Sbjct:   467 MDLSRNSFHGN--LPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLF-MDNNLF 523

Query:   267 DGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK---------- 316
              G I     ++  L+LLD+SNN LTG IP  +     +L  L++S+N LK          
Sbjct:   524 TGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGE-LPSLTALLISDNFLKGDIPMSLFNK 582

Query:   317 ---EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN 373
                + L L+ NSLSG IP    +   ++ +++ +N L G IP     L +++ILD+ +N 
Sbjct:   583 SSLQLLDLSANSLSGVIPPQHDSRNGVV-LLLQDNKLSGTIPDTL--LANVEILDLRNNR 639

Query:   374 ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNN 433
              SG +P  F  ++I+ + +   +L R        N   G IP  +  LS +  L L +N 
Sbjct:   640 FSGKIPE-F--INIQNISI---LLLRG-------NNFTGQIPHQLCGLSNIQLLDLSNNR 686

Query:   434 LEGEVP-VXXXXXXXXXXXXXXXXXXHG-SIPP-CFDNTTLYESYNNSSSLDEKFEISFF 490
             L G +P                     G S P   F+  +L++ ++++ +    F+    
Sbjct:   687 LNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLT 746

Query:   491 IEGPQGD----------FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQ 540
             ++    D          F TK+    Y G  L LL G+ LS N+L G IP + G L  ++
Sbjct:   747 LDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELR 806

Query:   541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 600
              LNLS+NNL+G+IP + S+++ +ES DLS+N+L G+IP QL EL +L VF V++NNLSG 
Sbjct:   807 ALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSG- 865

Query:   601 ILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFT 660
             ++    QF TF+  SY GN  LCG P     +  +  EA  G E D+++IDM SF+++F 
Sbjct:   866 VIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNGVEADESIIDMVSFYLSFA 925

Query:   661 TSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
              +YV ++  I+  L  +S W R WFY V+ +I
Sbjct:   926 AAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
 Identities = 221/699 (31%), Positives = 320/699 (45%)

Query:    42 FDSLRDLEELDIGENKIDKFVVSKELY----LDDTGFKGTLDIREFDSFNN------LEV 91
             F+SL  LE L + +N  + F     L     L       T ++ + ++ +N      L V
Sbjct:   304 FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTV 363

Query:    92 LDM---SYNKIDNLVVPQ-ELRLSD---NHFRIPISLEPLFNHSRLKIFHAKNNQMNA-E 143
               +   S  KI N +V Q  LRL D   N     I    L N+  LK+   KNN     +
Sbjct:   364 AALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQ 423

Query:   144 I-TESHSLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLE 202
             I T  H L   +F             G   P+ L H +       SH    G  P+ + E
Sbjct:   424 IPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLL-HMNG------SHNGFQGNLPSSMGE 476

Query:   203 NNTKLATLFLVNDSLAGPFWLP---IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
              N  ++ L L  ++ +G   LP   +     L  L +S+N+  G I + I   L SL V 
Sbjct:   477 MND-ISFLDLSYNNFSGE--LPRSLLTGCFSLITLQLSHNSFSGPI-LPIQTRLTSLIVL 532

Query:   260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG- 318
              +  N   G I      +  L + D SNN+LTG I   +     +L  L+LSNN L EG 
Sbjct:   533 RMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLL-EGT 591

Query:   319 -------------LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ 365
                          L L+ N LSG++P  + N  + I I +  N   GP+PV    L +  
Sbjct:   592 LPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTL--LENAY 649

Query:   366 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLS 425
             ILD+ +N +SGS+P  F       V+  K M+   L+     N L GSIP  + +L+ + 
Sbjct:   650 ILDLRNNKLSGSIPQ-F-------VNTGK-MITLLLRG----NNLTGSIPRKLCDLTSIR 696

Query:   426 HLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFDNTTLYESYNNSSSLDE-- 483
              L L  N L G +P                      I   F ++   E Y ++  +DE  
Sbjct:   697 LLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEIS--FGDSLQMEFYRSTFLVDEFM 754

Query:   484 -KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
               ++ ++ I   + +F  K     + G  L  + GL LS N+L G IP ++G+L++++ L
Sbjct:   755 LYYDSTYMIV--EIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRAL 812

Query:   543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602
             NLS N L+  IP+ FS LK IESLDLSYN L G IPHQL  L +L VF+V++NNLSG I+
Sbjct:   813 NLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSG-II 871

Query:   603 EWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNER---DDN---LIDMDSF 655
                 QF TFN +SY GN  LCG P    C       EA  G E    DD+    IDM   
Sbjct:   872 PQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVL 931

Query:   656 FITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITT 694
             + T  ++Y I +  I++++  +  WRR W   V+ +I +
Sbjct:   932 YWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 2.5e-59, P = 2.5e-59
 Identities = 189/600 (31%), Positives = 289/600 (48%)

Query:   110 LSDN--HFRIPISLEPLFNHSRLKIFHAKNNQMNA-EITES-HSLTAPNFXXXXXXXXXX 165
             LSDN  H   P  L  L N+++L++   +NN   + ++ +S H+L   N           
Sbjct:   387 LSDNQIHGNFPSWL--LENNTKLEVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFL 444

Query:   166 YGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPI 225
                G   P      H L  V L++    G  P+  L+N   +  L L ++   G   LP 
Sbjct:   445 QNFGWILP------H-LVCVNLAYNGFQGNLPS-SLDNMKSIEFLDLSHNRFHGK--LPR 494

Query:   226 HSHK---RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282
                K    L IL +S+N + G +  E  +    L+V ++  N   G+I   F ++  L +
Sbjct:   495 RFLKGCYNLTILKLSHNKLSGEVFPEAAN-FTRLWVMSMDNNLFTGNIGKGFRSLPSLNV 553

Query:   283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
             LD+SNN+LTG IP  +       Q L          L L+NN L G IP  L N+++L  
Sbjct:   554 LDISNNKLTGVIPSWIG----ERQGLF--------ALQLSNNMLEGEIPTSLFNISYLQL 601

Query:   343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK 402
             + +  N L G IP     +Y   +L + +NN+SG +P     L++  + L  N L   L 
Sbjct:   602 LDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTLL-LNVIVLDLRNNRLSGNLP 660

Query:   403 -----RDLSYNLLNGS-----IPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXX 452
                  +++S  LL G+     IP     LS +  L L +N   G +P             
Sbjct:   661 EFINTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIP--SCLSNTSFGLR 718

Query:   453 XXXXXXHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
                      +P  F        + +   +DE   ++      + +F TK+    Y G  L
Sbjct:   719 KGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNL 778

Query:   513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
              LL G+ LS N+L G IP ++G L  ++ LNLS+NNL+G+I  +FS LK++ESLDLS+N+
Sbjct:   779 KLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNR 838

Query:   573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRS 632
             L G IP QL ++ +L VF+V+YNNLSG I+    QF TF   SY GN  LCG  + I  +
Sbjct:   839 LQGPIPLQLTDMISLAVFNVSYNNLSG-IVPQGRQFNTFETQSYFGNPLLCGKSIDISCA 897

Query:   633 PATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
                      G E D++ +DM+SF+ +F  +YV ++  I+  L  +S W R WFY V+ ++
Sbjct:   898 SNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 1.9e-56, P = 1.9e-56
 Identities = 223/700 (31%), Positives = 328/700 (46%)

Query:    44 SLRDLEELDIGENKID-----KF--VVSKE-LYLDDTGFKGTLDIREFDSFNNLE---VL 92
             SL+ L  LD+  N++       F  + S E L L D  F G+  +    +  NL+   VL
Sbjct:   268 SLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVL 327

Query:    93 DM-SYNKIDNLVVPQE-LRLSD---NHFRIPISLEPLFNHSRLKIFHAKNNQMNA-EI-T 145
                S  KI + ++ Q+ LRL D   N+    I    L N+  L++   +NN      I T
Sbjct:   328 RFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFTIFPIPT 387

Query:   146 ESHSLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRL--SHIKMNGEFPNWLLEN 203
               H+L   +F                FP  + H      VRL  S+    G FP  + E 
Sbjct:   388 MVHNLQIFDFSANNIGK---------FPDKMDHALP-NLVRLNGSNNGFQGYFPTSIGEM 437

Query:   204 NTKLATLFLVNDSLAGPFWLP---IHSHKRLGILDISNNNIRGH-IPVEIGDVLPSLYVF 259
                ++ L L  ++ +G   LP   +     +  L +S+N   G  +P E     PSL V 
Sbjct:   438 KN-ISFLDLSYNNFSGK--LPRSFVTGCVSIMFLKLSHNKFSGRFLPRETN--FPSLDVL 492

Query:   260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG- 318
              +  N   G+I     N   L++LD+SNN L+G IP  L      L ++++SNN L EG 
Sbjct:   493 RMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWL-FEFPYLDYVLISNNFL-EGT 550

Query:   319 -------------LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ 365
                          L L+ N  SG +P  + +    I++ +  N+  GPIP     L S+Q
Sbjct:   551 IPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELG-IYMFLHNNNFTGPIPDTL--LKSVQ 607

Query:   366 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLS 425
             ILD+ +N +SGS+P      SI       N+L       L  N L GSIP  + +LS + 
Sbjct:   608 ILDLRNNKLSGSIPQFDDTQSI-------NILL------LKGNNLTGSIPRELCDLSNVR 654

Query:   426 HLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFDNTTLYESYNNSSSLDEKF 485
              L L  N L G +P                     +IPP F  T+L      S+ L +K 
Sbjct:   655 LLDLSDNKLNGVIPSCLSNLSFGRLQEDAMAL---NIPPSFLQTSLEMELYKSTFLVDKI 711

Query:   486 EI--SFFIEGPQGDFTTKNIAYIYQGK------VLSLLSGLYLSCNKLIGHIPPQIGNLT 537
             E+  S + E  +  F  K     Y G+      +L L+ G+ LS N+L G IP ++G+L 
Sbjct:   712 EVDRSTYQE-TEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLL 770

Query:   538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597
             +++TLNLS+N+L G IPS+FS L  +ESLDLS+N L G IP  L  L +L VF V+ NNL
Sbjct:   771 KLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNL 830

Query:   598 SGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDN--LIDMDS 654
             SG I+    QF TF + SY GN  LCG P    C +  +  EA  G E +D+   IDM  
Sbjct:   831 SG-IIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMV 889

Query:   655 FFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITT 694
             F+ +  + YV  +  +++++  +  WRR W   V+ +I +
Sbjct:   890 FYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
 Identities = 171/537 (31%), Positives = 262/537 (48%)

Query:   181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPI---HSHKRLGILDIS 237
             +L ++  S     G  P+ + E  + L  L + ++ L G   LPI        L +L +S
Sbjct:   554 NLRFMNFSSNHFQGTIPSSIGEMKS-LQVLDMSSNGLYGQ--LPIMFLSGCYSLRVLKLS 610

Query:   238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
             NN ++G I  +  ++   + +F +  N   GS+       K L LLD+S+N+ +G +P  
Sbjct:   611 NNQLQGKIFSKHANLTGLVGLF-LDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLP-- 667

Query:   298 LAVGCVN-LQFLMLSNNSLK------------EGLYLTNNSLSGNIPGWLGNLTWLIHII 344
             L +G ++ L +L +S N LK            E + +++NS SG+IP  + N   L  + 
Sbjct:   668 LWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHNSFSGSIPRNV-NFPSLRELR 726

Query:   345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRD 404
             +  N   G +P    +   L++LD+ +NN SG + +     +I+Q   SK  L   L R+
Sbjct:   727 LQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILN-----TIDQT--SK--LRILLLRN 777

Query:   405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPP 464
              S+      IP  I +LS++  L L HN   G +P                         
Sbjct:   778 NSFQTY---IPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDF 834

Query:   465 CFDNTTLYESYNNSSSLDEKFEISFFIE-GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523
              +     +  Y +  +LD+     +  +     DF TK+    YQG +L  + GL LS N
Sbjct:   835 SYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSN 894

Query:   524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583
             +L G IP +IG+L  I++LNLS N LTG IP + S LK +ESLDLS NKL+G IP  L +
Sbjct:   895 ELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALAD 954

Query:   584 LKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL-PICRSPATMSEASIG 642
             L +L   +++YNNLSGEI  +     TF++ SY GN  LCGLP    C S       S+ 
Sbjct:   955 LNSLGYLNISYNNLSGEI-PFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVS 1013

Query:   643 -------NERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 692
                    NE + N+IDM  F+ T    Y+    A+   LY++S W R WFY V++ +
Sbjct:  1014 THAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 1.5e-52, P = 1.5e-52
 Identities = 172/536 (32%), Positives = 261/536 (48%)

Query:   180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
             H+L+ +  S   + G FP+        L  +   N+   G F   +     +  LD+S N
Sbjct:   389 HNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYN 448

Query:   240 NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
             N+ G +P        SL +  +S N   G       N   L +L ++NN  TG+I   L 
Sbjct:   449 NLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLL 508

Query:   300 VGCVNLQFLMLSNNSLKEGL--------YLTNNSLSGNI-PGWLGNLTWLIHII-MPENH 349
                V+L  L +SNN L+  L        YL    LSGN+  G L +   L +++ +  N+
Sbjct:   509 T-LVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLHNNN 567

Query:   350 LEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL 409
               GPIP  F  L S+QILD+ +N +SG++P  F    ++   +S  +L          N 
Sbjct:   568 FTGPIPDTF--LGSIQILDLRNNKLSGNIPQ-F----VDTQDISFLLLRG--------NS 612

Query:   410 LNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFDNT 469
             L G IP  + E S++  L L  N L G +P                   + ++       
Sbjct:   613 LTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVAL----E 668

Query:   470 TLYESYNNSSSLDEKFEISF--FIEGPQGDFTTKNI--AYI----YQGKVLSLLSGLYLS 521
             + Y  +  S+ + E F + +  + E     F TK    +YI    +    L+ + GL LS
Sbjct:   669 SFYLGFYKSTFVVENFRLDYSNYFE-IDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLS 727

Query:   522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581
              N+L G IP ++G+L +++ LNLS+N L+  IP +FS L+ IESLDLSYN L G IPHQL
Sbjct:   728 SNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQL 787

Query:   582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI-CRSPATMSEAS 640
               L +L +F+V+YNNLSG I+    QF TF+++SY GN  LCG P    C +     E +
Sbjct:   788 TNLTSLAIFNVSYNNLSG-IIPQGKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENA 846

Query:   641 IGNERDDN--LIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITT 694
              G E DD    IDM  F+ +   +YV  +  I++++ V+  WRR W   V+ +I +
Sbjct:   847 NGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 3.3e-46, P = 3.3e-46
 Identities = 199/691 (28%), Positives = 316/691 (45%)

Query:    40 KEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 99
             KE   L +LE LD+ +N +     S E+ +D    K  L I   ++ NNLE +  S  ++
Sbjct:   114 KELGDLSELEVLDLADNSL-----SGEIPVDIFKLK-KLKILSLNT-NNLEGVIPS--EL 164

Query:   100 DNLVVPQELRLSDNHF--RIPISLEPLFNHSRLKIFHAKNNQ-MNAEITESHSLTAPNFX 156
              NLV   EL L DN     IP ++  L N   L+IF A  N+ +  E+         +  
Sbjct:   165 GNLVNLIELTLFDNKLAGEIPRTIGELKN---LEIFRAGGNKNLRGELPWEIG-NCESLV 220

Query:   157 XXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS 216
                       G     P  + +   ++ + L    ++G  P+ +  N T+L  L+L  +S
Sbjct:   221 TLGLAETSLSG---RLPASIGNLKKVQTIALYTSLLSGPIPDEI-GNCTELQNLYLYQNS 276

Query:   217 LAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN 276
             ++G   + +   K+L  L +  NN+ G IP E+G   P L++ ++S N L G+IP SFGN
Sbjct:   277 ISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELG-TCPELFLVDLSENLLTGNIPRSFGN 335

Query:   277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336
             +  LQ L LS NQL+G IPE LA  C  L  L + NN +           SG IP  +G 
Sbjct:   336 LPNLQELQLSVNQLSGTIPEELA-NCTKLTHLEIDNNQI-----------SGEIPPLIGK 383

Query:   337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKN 395
             LT L      +N L G IP    Q   LQ +D+S NN+SGS+P+  F   ++ ++ L  N
Sbjct:   384 LTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSN 443

Query:   396 MLHRQLKRDLS-----YNL-LNGS-----IPDWIGELSQLSHLILGHNNLEGEVPVXXXX 444
              L   +  D+      Y L LNG+     IP  IG L  L+ + +  N L G +P     
Sbjct:   444 YLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISG 503

Query:   445 XXXXXXXXXXXXXXHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504
                            G +P     +  +   +++S L           G   + T  N+A
Sbjct:   504 CTSLEFVDLHSNGLTGGLPGTLPKSLQFIDLSDNS-LTGSLPTGI---GSLTELTKLNLA 559

Query:   505 YI-YQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQ-TLNLSYNNLTGLIPST 556
                + G++   +S       L L  N   G IP ++G +  +  +LNLS N+ TG IPS 
Sbjct:   560 KNRFSGEIPREISSCRSLQLLNLGDNGFTGEIPNELGRIPSLAISLNLSCNHFTGEIPSR 619

Query:   557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY 616
             FS+L ++ +LD+S+NKL G + + L +L+ L   ++++N  SGE+   T  F     S  
Sbjct:   620 FSSLTNLGTLDVSHNKLAGNL-NVLADLQNLVSLNISFNEFSGELPN-TLFFRKLPLSVL 677

Query:   617 EGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYV 676
             E N    GL +      +T  E  I   R  + + + +  I    S V+V+ A+  ++  
Sbjct:   678 ESNK---GLFI------STRPENGI-QTRHRSAVKV-TMSILVAASVVLVLMAVYTLVKA 726

Query:   677 NSYWRRRWFYFVEMWITTCYY---FVVDNLI 704
                  ++    ++ W  T Y    F +D+++
Sbjct:   727 QRITGKQ--EELDSWEVTLYQKLDFSIDDIV 755

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 3.2e-45, P = 3.2e-45
 Identities = 175/603 (29%), Positives = 276/603 (45%)

Query:    67 LYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKID---------NLVVPQELRLSDNHFRI 117
             L L      G +   EF   N LE L ++ N++          N    ++L LS+     
Sbjct:   293 LDLSSNNLTGVIH-EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG 351

Query:   118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFXXXXXXXXXXYGDGVTFPKFLY 177
              I  E + N   LK+    NN +  +I +S                   G   T    + 
Sbjct:   352 EIPAE-ISNCQSLKLLDLSNNTLTGQIPDS-LFQLVELTNLYLNNNSLEG---TLSSSIS 406

Query:   178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237
             +  +L+   L H  + G+ P  +     KL  ++L  +  +G   + I +  RL  +D  
Sbjct:   407 NLTNLQEFTLYHNNLEGKVPKEIGFLG-KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWY 465

Query:   238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
              N + G IP  IG  L  L   ++  N L G+IP+S GN   + ++DL++NQL+G IP  
Sbjct:   466 GNRLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS 524

Query:   298 LAVGCVNLQFLMLSNNSLKEGL--------YLT-----NNSLSGNIPGWLGNLTWLIHII 344
                    L+  M+ NNSL+  L         LT     +N  +G+I    G+ ++L   +
Sbjct:   525 FGF-LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDV 583

Query:   345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRD 404
               EN  EG IP+E  +  +L  L +  N  +G +P  F  +S     LS  +L      D
Sbjct:   584 T-ENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKIS----ELS--LL------D 630

Query:   405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPP 464
             +S N L+G IP  +G   +L+H+ L +N L G +P                    GS+P 
Sbjct:   631 ISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPT 690

Query:   465 -CFDNTTLYESYNNSSSLDEKF--EISFFIEGPQGDFTTKNIAYIYQGKV--LSLLSGLY 519
               F  T +   + + +SL+     EI         +     ++      +  LS L  L 
Sbjct:   691 EIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELR 750

Query:   520 LSCNKLIGHIPPQIGNLTRIQT-LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
             LS N L G IP +IG L  +Q+ L+LSYNN TG IPST S L  +ESLDLS+N+L G++P
Sbjct:   751 LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

Query:   579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSE 638
              Q+ ++K+L   +++YNNL G++ +   QF+ +   ++ GN  LCG PL  C    + ++
Sbjct:   811 GQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQ 867

Query:   639 ASI 641
              S+
Sbjct:   868 RSL 870

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2020457 BRL1 "BRI1 like" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 142/521 (27%), Positives = 234/521 (44%)

Query:    67 LYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI-PISLEPLF 125
             L L ++G  GTL++    +  NL+ L +  N   +     +   SD + ++  +S   + 
Sbjct:    82 LDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFSS---GGDSSGSDCYLQVLDLSSNSIS 138

Query:   126 NHSRLK-IFHAKNNQMNAEITESHSLT----APNFXXXXXXXXXXYG---DGVTFPKFLY 177
             ++S +  +F   +N ++  I+ +  +     AP+           Y    D +       
Sbjct:   139 DYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISD 198

Query:   178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGP-FWLPIHSHKRLGILDI 236
                 L+Y+ L+H  ++G+F +        L    L  ++L+G  F + + + K L  L+I
Sbjct:   199 FPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNCKFLETLNI 258

Query:   237 SNNNIRGHIPV-EIGDVLPSLYVFNISMNALDGSIPSSFGNM-KFLQLLDLSNNQLTGEI 294
             S NN+ G IP  E      +L   +++ N L G IP     + K L +LDLS N  +GE+
Sbjct:   259 SRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGEL 318

Query:   295 PEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI 354
             P      CV LQ L L NN L  G +L  N++   I G    +T+L    +  N++ G +
Sbjct:   319 PSQFTA-CVWLQNLNLGNNYLS-GDFL--NTVVSKITG----ITYLY---VAYNNISGSV 367

Query:   355 PVEFCQLYSLQILDISDNNISGSLPSCFHPLS----IEQVHLSKNMLH----------RQ 400
             P+      +L++LD+S N  +G++PS F  L     +E++ ++ N L           + 
Sbjct:   368 PISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKS 427

Query:   401 LKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXX-XXXXXXXXXXXXXXXX 458
             LK  DLS+N L G IP  I  L  LS L++  NNL G +P                    
Sbjct:   428 LKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLL 487

Query:   459 HGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
              GSIP         ES +  +++        +I       T K  + I  G  LS L+ L
Sbjct:   488 TGSIP---------ESISRCTNM-------IWISLSSNRLTGKIPSGI--GN-LSKLAIL 528

Query:   519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
              L  N L G++P Q+GN   +  L+L+ NNLTG +P   ++
Sbjct:   529 QLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELAS 569

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	710
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-31
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  181 bits (461), Expect = 9e-48
 Identities = 181/571 (31%), Positives = 251/571 (43%), Gaps = 91/571 (15%)

Query: 106 QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSS 165
           Q + LS+N    PI  +     S L+  +  NN     I      + PN  L++L LS++
Sbjct: 96  QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPN--LETLDLSNN 150

Query: 166 YGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPI 225
              G   P  +     L+ + L    + G+ PN L  N T L  L L ++ L G     +
Sbjct: 151 MLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPREL 208

Query: 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285
              K L  + +  NN+ G IP EIG  L SL   ++  N L G IPSS GN+K LQ L L
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIM 345
             N+L+G IP  +     +LQ L+         L L++NSLSG IP  +  L  L  + +
Sbjct: 268 YQNKLSGPIPPSI----FSLQKLI--------SLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 346 PENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK-RD 404
             N+  G IPV    L  LQ+L +  N  SG +P           +L K   H  L   D
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK----------NLGK---HNNLTVLD 362

Query: 405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP 464
           LS N L G IP+ +     L  LIL  N+LEGE+P  L     L+ + L +NS  G +P 
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 465 CFDNTTLYE----SYNNSSSL--DEKFEI-----------SFFIEGPQGDFTTKNIAYIY 507
            F    L      S NN        K+++            FF   P   F +K      
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKR----- 476

Query: 508 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLD 567
                  L  L LS N+  G +P ++G+L+ +  L LS N L+G IP   S+ K + SLD
Sbjct: 477 -------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 568 LSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-----------------------LEW 604
           LS+N+L+G+IP    E+  L    ++ N LSGEI                       L  
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Query: 605 TAQFATFNKSSYEGNTFLCG----LPLPICR 631
           T  F   N S+  GN  LCG      LP C+
Sbjct: 590 TGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  165 bits (419), Expect = 2e-42
 Identities = 135/423 (31%), Positives = 193/423 (45%), Gaps = 58/423 (13%)

Query: 187 LSHIKMNGEFPNW---LLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG 243
           LS+   + +   W      N++++ ++ L   +++G     I     +  +++SNN + G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 244 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303
            IP +I     SL   N+S N   GSIP   G++  L+ LDLSNN L+GEIP  +     
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FS 164

Query: 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 363
           +L+ L L             N L G IP  L NLT L  + +  N L G IP E  Q+ S
Sbjct: 165 SLKVLDLG-----------GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213

Query: 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQ 423
           L+ + +  NN+SG +P     L+      S N L      DL YN L G IP  +G L  
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLT------SLNHL------DLVYNNLTGPIPSSLGNLKN 261

Query: 424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC---FDNTTLYESYNNSSS 480
           L +L L  N L G +P  +  L +L  LDLS+NSL G IP       N  +   ++N   
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN--- 318

Query: 481 LDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL--LSGLYLSCNKLIGHIPPQIGNLTR 538
                           +FT K         + SL  L  L L  NK  G IP  +G    
Sbjct: 319 ----------------NFTGK-----IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357

Query: 539 IQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           +  L+LS NNLTG IP    +  ++  L L  N L G+IP  L   ++L    +  N+ S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 599 GEI 601
           GE+
Sbjct: 418 GEL 420

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (375), Expect = 6e-37
 Identities = 115/358 (32%), Positives = 163/358 (45%), Gaps = 68/358 (18%)

Query: 258 VFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN---- 313
             ++S   + G I S+   + ++Q ++LSNNQL+G IP+ +     +L++L LSNN    
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 314 -------SLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQI 366
                     E L L+NN LSG IP  +G+ + L  + +  N L G IP     L SL+ 
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 367 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLS 425
           L ++ N + G +P            L +    + LK   L YN L+G IP  IG L+ L+
Sbjct: 193 LTLASNQLVGQIPR----------ELGQ---MKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 426 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKF 485
           HL L +NNL G +P  L  L  LQ L L  N L G IPP   +           SLD   
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLISLD--- 290

Query: 486 EISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS 545
                                             LS N L G IP  +  L  ++ L+L 
Sbjct: 291 ----------------------------------LSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 546 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603
            NN TG IP   ++L  ++ L L  NK +G+IP  L +   L V  ++ NNL+GEI E
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (331), Expect = 1e-31
 Identities = 106/331 (32%), Positives = 154/331 (46%), Gaps = 58/331 (17%)

Query: 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLY 362
             Q +  +N+S    + L+  ++SG I   +  L ++  I +  N L GPIP + F    
Sbjct: 59  LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS 422
           SL+ L++S+NN +GS+P    P  +E +             DLS N+L+G IP+ IG  S
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPN-LETL-------------DLSNNMLSGEIPNDIGSFS 164

Query: 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLD 482
            L  L LG N L G++P  L  L  L+ L L++N L G IP                 L 
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP---------------RELG 209

Query: 483 EKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
           +                 K++ +IY G             N L G IP +IG LT +  L
Sbjct: 210 Q----------------MKSLKWIYLGY------------NNLSGEIPYEIGGLTSLNHL 241

Query: 543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602
           +L YNNLTG IPS+  NLK+++ L L  NKL+G IP  +  L+ L    ++ N+LSGEI 
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 603 EWTAQFATFNKSSYEGNTFLCGLPLPICRSP 633
           E   Q           N F   +P+ +   P
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.8 bits (202), Expect = 5e-16
 Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573
            + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTA----QFATFNKSSYEGNTFLCGLP-LP 628
           NG IP  L +L +L + ++  N+LSG +           A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 629 ICRSPATMSEASIGNERDDNLIDMDSFFITFTTS---YVIVIFAIVIILYVNSYWRRR 683
            C  P     A IG              I F  S     +VI A+        +W+RR
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAFLFLVICAMC-------WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           L + N  +RG IP +I   L  L   N+S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
           IPE L               SL+  L L  NSLSG +P  LG    L+H
Sbjct: 482 IPESLG-----------QLTSLRI-LNLNGNSLSGRVPAALGGR--LLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 210 LFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGS 269
           L L N  L G     I   + L  +++S N+IRG+IP  +G +  SL V ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 270 IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 298
           IP S G +  L++L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 6e-11
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 13/105 (12%)

Query: 339 WLIHIIMPENH-LEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 397
           W I  +  +N  L G IP +  +L  LQ +++S N+I G++P     ++  +V       
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV------- 470

Query: 398 HRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442
                 DLSYN  NGSIP+ +G+L+ L  L L  N+L G VP  L
Sbjct: 471 -----LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 66/295 (22%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L+LS N+    I   L    +L  L L  NSLEG I  K   + R L  + + +N    
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDN---- 414

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 120
                        F G L   EF     +  LD+S N +         R++   + +P  
Sbjct: 415 ------------SFSGELP-SEFTKLPLVYFLDISNNNLQG-------RINSRKWDMP-- 452

Query: 121 LEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQH 180
                                               LQ LSL+ +   G   P   +   
Sbjct: 453 -----------------------------------SLQMLSLARNKFFG-GLPDS-FGSK 475

Query: 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN 240
            LE + LS  + +G  P  L  + ++L  L L  + L+G     + S K+L  LD+S+N 
Sbjct: 476 RLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
           + G IP    + +P L   ++S N L G IP + GN++ L  +++S+N L G +P
Sbjct: 535 LSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 279 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
           F+  L L N  L G IP  ++     L+ L        + + L+ NS+ GNIP  LG++T
Sbjct: 419 FIDGLGLDNQGLRGFIPNDIS----KLRHL--------QSINLSGNSIRGNIPPSLGSIT 466

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS 380
            L  + +  N   G IP    QL SL+IL+++ N++SG +P+
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 410 LNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           L G IP+ I +L  L  + L  N++ G +P  L  +  L++LDLS NS +GSIP
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           +LS N + G+IP  +G ++ L  L L +N+  G +P  L +L  L++L+L+ NSL G +P
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 518 LYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573
           L LS N+L   IP      L  ++ L+LS NNLT + P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 45/129 (34%)

Query: 429 LGHNN--LEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFE 486
           LG +N  L G +P  + +L  LQ ++LS NS+ G+IPP   + T  E             
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV------------ 470

Query: 487 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY 546
                                          L LS N   G IP  +G LT ++ LNL+ 
Sbjct: 471 -------------------------------LDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 547 NNLTGLIPS 555
           N+L+G +P+
Sbjct: 500 NSLSGRVPA 508

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597
            +++L+LS N LT +    F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSI 37
           L+LS NSFN +I  SL  L+SLR LNLNGNSL G +
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 314
           +L   ++S N L      +F  +  L++LDLS N LT  I      G  +L+ L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 315 L 315
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 57/230 (24%), Positives = 82/230 (35%), Gaps = 36/230 (15%)

Query: 397 LHRQLK-RDLSYNLLNGSIPDWIGEL----SQLSHLILGHNNLEGEVP-VQLC-----EL 445
               L+   L  N L       +         L  L L  N        +Q       + 
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 446 NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDE-KFEISFFIEGPQGDFTTKNIA 504
             LQ LDLS+N+L        D   + ES   SSSL E K           GD   + +A
Sbjct: 81  CGLQELDLSDNAL------GPDGCGVLESLLRSSSLQELKLN-----NNGLGDRGLRLLA 129

Query: 505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNL----TRIQTLNLSYNNLTG-LIPSTFSN 559
              +    +L   L L  N+L G     +         ++ LNL+ N +    I +    
Sbjct: 130 KGLKDLPPALEK-LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 560 LKH---IESLDLSYNKLN----GKIPHQLVELKTLEVFSVAYNNLSGEIL 602
           LK    +E LDL+ N L       +   L  LK+LEV ++  NNL+    
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 289
            L  LD+SNN +   IP      LP+L V ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 290 L 290
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA 265
            L ++ L  +S+ G     + S   L +LD+S N+  G IP  +G  L SL + N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 266 LDGSIPSSFG 275
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/55 (38%), Positives = 23/55 (41%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
           DLS N L          L  L  L L  NNL    P     L  L+ LDLS N+L
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 1  MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI 58
           L+LS N        +   L +L+ L+L+GN+L  SI  + F  L  L  LD+  N +
Sbjct: 4  SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	710
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.44
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
PLN03150	623	hypothetical protein; Provisional	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4341	483	consensus F-box protein containing LRR [General fu	97.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG4341	483	consensus F-box protein containing LRR [General fu	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.26
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.59
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.98
smart00370	26	LRR Leucine-rich repeats, outliers.	92.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.54
smart00370	26	LRR Leucine-rich repeats, outliers.	92.54
KOG4308	478	consensus LRR-containing protein [Function unknown	91.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.02
KOG4308	478	consensus LRR-containing protein [Function unknown	88.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.79
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.45

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.7e-58  Score=547.57  Aligned_cols=532  Identities=31%  Similarity=0.449  Sum_probs=444.7

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC------CcccccEEecCCCcc
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID------KFVVSKELYLDDTGF   74 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~------~l~~l~~L~L~~~~~   74 (710)
                      .|||++|.|++..+.+|.++++|++|+|++|++.+.++.+.|..+++|++|+|++|.++      .+++|++|+|++|.+
T Consensus        73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~  152 (968)
T PLN00113         73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML  152 (968)
T ss_pred             EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcc
Confidence            37889999999888899999999999999999887788677778999999999999875      577888888888888


Q ss_pred             eeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCC
Q 005168           75 KGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPN  154 (710)
Q Consensus        75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~  154 (710)
                      .+.+|. .+.++++|++|++++|.+.+.                .+ ..+.++++|+.|++++|.+....+..   +...
T Consensus       153 ~~~~p~-~~~~l~~L~~L~L~~n~l~~~----------------~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l  211 (968)
T PLN00113        153 SGEIPN-DIGSFSSLKVLDLGGNVLVGK----------------IP-NSLTNLTSLEFLTLASNQLVGQIPRE---LGQM  211 (968)
T ss_pred             cccCCh-HHhcCCCCCEEECccCccccc----------------CC-hhhhhCcCCCeeeccCCCCcCcCChH---HcCc
Confidence            877777 788888888888888776532                22 34566777777777777765554433   2344


Q ss_pred             CcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEE
Q 005168          155 FQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGIL  234 (710)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  234 (710)
                      .+|++|++ .++.+.+.+|..+..+++|++|++++|.+.+..|..+ .++++|+.|++++|.+.+..|..+..+++|++|
T Consensus       212 ~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        212 KSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             CCccEEEC-cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            57777777 6677777788888888889999998888888888776 788889999999888888888888888889999


Q ss_pred             EcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCC
Q 005168          235 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS  314 (710)
Q Consensus       235 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  314 (710)
                      ++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.... .+++|+.|++++|.
T Consensus       290 ~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~  367 (968)
T PLN00113        290 DLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNN  367 (968)
T ss_pred             ECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCe
Confidence            99988888777776654 78899999999988888888888889999999999988867776554 68888888887776


Q ss_pred             CcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEcc
Q 005168          315 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLS  393 (710)
Q Consensus       315 l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~  393 (710)
                      +..           ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..+..+. ++.|+.++++
T Consensus       368 l~~-----------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        368 LTG-----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             eEe-----------eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence            553           5677888888899999999998888888888899999999999998887777666 7888888766


Q ss_pred             CccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccc
Q 005168          394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYE  473 (710)
Q Consensus       394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  473 (710)
                      +|.+.+             ..|..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+.+     
T Consensus       437 ~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-----  497 (968)
T PLN00113        437 NNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS-----  497 (968)
T ss_pred             CCcccC-------------ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----
Confidence            665543             666777788999999999999998888765 4689999999999999888887766     


Q ss_pred             cccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC
Q 005168          474 SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI  553 (710)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  553 (710)
                                                            ++.|+.|++++|.+.+.+|..+.++++|++|+|++|.+++..
T Consensus       498 --------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        498 --------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             --------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                                                  348999999999999999999999999999999999999999


Q ss_pred             chhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          554 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       554 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      |..|.++++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|.. ..+..+....+.||+..|+.+
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999974 677788888899999998743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-54  Score=512.27  Aligned_cols=515  Identities=29%  Similarity=0.428  Sum_probs=452.8

Q ss_pred             CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcC
Q 005168           20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI   99 (710)
Q Consensus        20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l   99 (710)
                      ..+++.|+|++|.+++.++ .+|..+++|++|+|++|+++                +.+|...+.++++|++|++++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~----------------~~ip~~~~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLS----------------GPIPDDIFTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccC----------------CcCChHHhccCCCCCEEECcCCcc
Confidence            3578899999988887666 78888999988888877665                567775566888888888888887


Q ss_pred             CC------CCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccC
Q 005168          100 DN------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFP  173 (710)
Q Consensus       100 ~~------~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  173 (710)
                      ++      +++|++|++++|.+.+..+ ..+.++++|+.|++++|.+....+..   +...++|++|++ .++.+.+.+|
T Consensus       131 ~~~~p~~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L-~~n~l~~~~p  205 (968)
T PLN00113        131 TGSIPRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFLTL-ASNQLVGQIP  205 (968)
T ss_pred             ccccCccccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChh---hhhCcCCCeeec-cCCCCcCcCC
Confidence            64      3788888888888876555 45788999999999999887666554   345668999999 8888888899


Q ss_pred             hhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcC
Q 005168          174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL  253 (710)
Q Consensus       174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  253 (710)
                      ..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l  283 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-L  283 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-c
Confidence            999999999999999999999899887 78999999999999999999999999999999999999998888888776 8


Q ss_pred             CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168          254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW  333 (710)
Q Consensus       254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~  333 (710)
                      ++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+ .++++|+.|++++|.+..           ..|..
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~-----------~~p~~  351 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSG-----------EIPKN  351 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcC-----------cCChH
Confidence            899999999999998999999999999999999999986666554 479999999988777653           67888


Q ss_pred             ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcc
Q 005168          334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNG  412 (710)
Q Consensus       334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~  412 (710)
                      ++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++             
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------------  418 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------------  418 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------------
Confidence            99999999999999999999999999999999999999999988887766 8899999777776554             


Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+.                         
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------------------  473 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-------------------------  473 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-------------------------
Confidence            6778889999999999999999998888888999999999999999887776542                         


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                                         .++|+.|++++|++++..|..|.++++|++|+|++|.+++..|+.+.++++|++|+|++|+
T Consensus       474 -------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        474 -------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             -------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                               2379999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      +++.+|+.+..+++|+.|++++|++++.+|..+..+..+..+++.+|+..+..|.
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999999999999999999999999888888999999999998886663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-43  Score=354.30  Aligned_cols=435  Identities=22%  Similarity=0.248  Sum_probs=319.4

Q ss_pred             CcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcE
Q 005168          130 LKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLAT  209 (710)
Q Consensus       130 L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~  209 (710)
                      -+.|+.+.+.+.......+..+.+ +.-+.|++ +++.+...-+..+.++++|+++++..|.++ .+|... ....+++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp-~~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~  129 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLP-SQTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEK  129 (873)
T ss_pred             ceeeecCccccccccccccCCcCc-cceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeE
Confidence            345666666665443333222222 25666888 677766666677788899999999988887 577654 45567999


Q ss_pred             EEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCc
Q 005168          210 LFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ  289 (710)
Q Consensus       210 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~  289 (710)
                      |+|.+|.|..+....++.++.|+.||||.|.|+ .+|...|..-.++++|+|++|.|+.+..+.|.++.+|.+|.|++|+
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            999999999888888889999999999999998 8887777655689999999999999999999999999999999999


Q ss_pred             cCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEEC
Q 005168          290 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI  369 (710)
Q Consensus       290 l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  369 (710)
                      ++ .+|..+|+.+++|+.|+|..|++..           ..--.|.++++|+.|.|..|.+.....++|.++.++++|+|
T Consensus       209 it-tLp~r~Fk~L~~L~~LdLnrN~iri-----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  209 IT-TLPQRSFKRLPKLESLDLNRNRIRI-----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             cc-ccCHHHhhhcchhhhhhccccceee-----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            98 9999999889999999998888763           22456889999999999999999888888999999999999


Q ss_pred             CCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCC
Q 005168          370 SDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL  448 (710)
Q Consensus       370 s~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  448 (710)
                      +.|++..+..+... +.+|++|+++.|.+.             .+.++..+-+++|++|+|++|+++...+.+|..+..|
T Consensus       277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-------------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-------------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ccchhhhhhcccccccchhhhhccchhhhh-------------eeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            99999877665443 777777755544443             3555666667777777777777777777777777777


Q ss_pred             CEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC
Q 005168          449 QLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH  528 (710)
Q Consensus       449 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  528 (710)
                      ++|.|++|.++...-..|..                                           +++|++|||++|.++..
T Consensus       344 e~LnLs~Nsi~~l~e~af~~-------------------------------------------lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVG-------------------------------------------LSSLHKLDLRSNELSWC  380 (873)
T ss_pred             hhhcccccchHHHHhhHHHH-------------------------------------------hhhhhhhcCcCCeEEEE
Confidence            77777777776544444544                                           33777777777777654


Q ss_pred             CC---ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC-CC
Q 005168          529 IP---PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EW  604 (710)
Q Consensus       529 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~  604 (710)
                      +.   .+|.++++|+.|+|.+|++..+...+|.++++|+.|||.+|.|..+-|++|..+ .|+.|-+..-.+.|+|. .|
T Consensus       381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            43   347777777777777777777777777777777777777777777777777777 77777777767777663 23


Q ss_pred             ccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168          605 TAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERD  646 (710)
Q Consensus       605 ~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  646 (710)
                      +.+|.      +..++-  ......|..|+.+.+.++...+.
T Consensus       460 l~qWl------~~~~lq--~sv~a~CayPe~Lad~~i~svd~  493 (873)
T KOG4194|consen  460 LAQWL------YRRKLQ--SSVIAKCAYPEPLADQSIVSVDT  493 (873)
T ss_pred             HHHHH------Hhcccc--cceeeeccCCcccccceeEeech
Confidence            22221      111110  11112677777777665544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-41  Score=340.45  Aligned_cols=304  Identities=23%  Similarity=0.271  Sum_probs=247.1

Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  258 (710)
                      .+.|+.||+|.|.++ .+|..-|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|.++ .+|...|..+++|+.
T Consensus       148 l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  148 LPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLES  225 (873)
T ss_pred             Hhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhh
Confidence            344555555555554 222222234566777777777777777788888999999999999999 999999988999999


Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT  338 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  338 (710)
                      |+|..|+|.-...-+|.++++|+.|.|.+|.++ .+.+++|.++.++++|+|+.|++..           ...+++.+++
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~-----------vn~g~lfgLt  293 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA-----------VNEGWLFGLT  293 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh-----------hhcccccccc
Confidence            999999998665778999999999999999998 8999999999999999998888775           5667888899


Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      .|+.|++++|.|..+-++++...++|+.|+|+.|+|+...+                                    +.|
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~------------------------------------~sf  337 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE------------------------------------GSF  337 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCCh------------------------------------hHH
Confidence            99999999999988888888888899999998888875443                                    445


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      ..+..|++|+|++|++..+...+|..+++|++|||++|.+++.+-+.-..                              
T Consensus       338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~------------------------------  387 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA------------------------------  387 (873)
T ss_pred             HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh------------------------------
Confidence            56778888888888888777778888999999999999887655432100                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                              |  ..++.|+.|+|.+|++..+...+|.++.+|++|||.+|.|..+.+++|..+ .|++|.+..-.+
T Consensus       388 --------f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  388 --------F--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             --------h--ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence                    0  126689999999999998888899999999999999999999999999999 899998864433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-38  Score=305.38  Aligned_cols=476  Identities=26%  Similarity=0.357  Sum_probs=292.3

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR   81 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~   81 (710)
                      |++++|.++ ....++.++..|.+|++++|++. ..| .+++.+..++.++.++|+++                 .+|+ 
T Consensus        50 lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-----------------~lp~-  108 (565)
T KOG0472|consen   50 LILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-----------------ELPE-  108 (565)
T ss_pred             hhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-----------------hccH-
Confidence            456666666 34445666666666666666665 555 56666666666666666665                 7777 


Q ss_pred             hhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEE
Q 005168           82 EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS  161 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~  161 (710)
                      .+..+++|+.+++++|.+..++                  ..++.+..++.++..+|++.....+.    ..+.++..++
T Consensus       109 ~i~s~~~l~~l~~s~n~~~el~------------------~~i~~~~~l~dl~~~~N~i~slp~~~----~~~~~l~~l~  166 (565)
T KOG0472|consen  109 QIGSLISLVKLDCSSNELKELP------------------DSIGRLLDLEDLDATNNQISSLPEDM----VNLSKLSKLD  166 (565)
T ss_pred             HHhhhhhhhhhhccccceeecC------------------chHHHHhhhhhhhccccccccCchHH----HHHHHHHHhh
Confidence            7778888888888888776541                  12333444444444444444332221    2223444444


Q ss_pred             ecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcC
Q 005168          162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI  241 (710)
Q Consensus       162 l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i  241 (710)
                      + .++......|..+. ++.|+++|...|.+. .+|..+ +.+.+|..|++.+|++.. .| .|.+|..|++++++.|+|
T Consensus       167 ~-~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  167 L-EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQI  240 (565)
T ss_pred             c-cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHH
Confidence            4 33333332233332 566666666665544 455555 566666666677666653 23 566677777777777777


Q ss_pred             cccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeec
Q 005168          242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYL  321 (710)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l  321 (710)
                      . .+|.+....++++..||+++|+++ ..|+.+.-+++|+.||+|+|.|+ .+|.... ++ .|+.|-+.+|++.+.   
T Consensus       241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~~L~leGNPlrTi---  312 (565)
T KOG0472|consen  241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLKFLALEGNPLRTI---  312 (565)
T ss_pred             H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eeeehhhcCCchHHH---
Confidence            6 677766655667777777777776 55666666777777777777776 6666554 34 667777777766531   


Q ss_pred             cCccCccCcCccccCCCccce----eeCccC---cc-----ccccchhhcCCCCCCEEECCCCcCcccCCCCCCCC---C
Q 005168          322 TNNSLSGNIPGWLGNLTWLIH----IIMPEN---HL-----EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL---S  386 (710)
Q Consensus       322 ~~n~l~~~~~~~~~~l~~L~~----L~L~~n---~l-----~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~---~  386 (710)
                      ..--+.+-   .-.-++.|+.    =-++..   .-     ..........+.+.+.|++++-+++.++...|...   -
T Consensus       313 Rr~ii~~g---T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  313 RREIISKG---TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHccc---HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence            00000000   0000000000    000000   00     00011112334566777777777777776666632   2


Q ss_pred             cceEEccCccccccccccCCCccCcccCChhhhcCCCccE-EecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168          387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSH-LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC  465 (710)
Q Consensus       387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  465 (710)
                      ....++++|++.              .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.+. .+|..
T Consensus       390 Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e  453 (565)
T KOG0472|consen  390 VTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEE  453 (565)
T ss_pred             eEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchh
Confidence            666766666665              55655555555443 455555554 67777888888888888888776 55555


Q ss_pred             cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCC
Q 005168          466 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS  545 (710)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  545 (710)
                      ++.+                                           ..|+.|+++.|.+. ..|.....+..++.+-.+
T Consensus       454 ~~~l-------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  454 MGSL-------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLAS  489 (565)
T ss_pred             hhhh-------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence            5443                                           36888888888877 677777777777777778


Q ss_pred             CccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          546 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       546 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      +|++..+.++.+.++.+|..|||.+|.+. .+|..+.++++|+.|++.||||.
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88898888888888899999999999988 77778888999999999999988

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=293.79  Aligned_cols=483  Identities=23%  Similarity=0.306  Sum_probs=294.0

Q ss_pred             CCCCCCEEeCCCCCCC-------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccc
Q 005168           44 SLRDLEELDIGENKID-------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFR  116 (710)
Q Consensus        44 ~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~  116 (710)
                      .-..|+.+.+++|.+.       ++..+.+|++++|+.. ++|+ +++.+.+++.++.+.|+++.+              
T Consensus        43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~l--------------  106 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSEL--------------  106 (565)
T ss_pred             hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhc--------------
Confidence            3344445555555443       2223333333333333 6777 777777777777777776643              


Q ss_pred             cccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccC
Q 005168          117 IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEF  196 (710)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~  196 (710)
                         + +....+.+++.++.+.|.+.                             .+|..++.+..++.++..+|.+. ..
T Consensus       107 ---p-~~i~s~~~l~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-sl  152 (565)
T KOG0472|consen  107 ---P-EQIGSLISLVKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SL  152 (565)
T ss_pred             ---c-HHHhhhhhhhhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cC
Confidence               2 34556666777766666543                             23344555556666666666666 34


Q ss_pred             ChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcC
Q 005168          197 PNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN  276 (710)
Q Consensus       197 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~  276 (710)
                      |..+ ..+.++..+++.+|++....|..+. ++.|++||...|-+. .+|.+++. +.+|+.|+++.|+|. ..| .|.+
T Consensus       153 p~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~g  226 (565)
T KOG0472|consen  153 PEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPG  226 (565)
T ss_pred             chHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCc
Confidence            4444 3566666777777776665554444 677777777777776 77777665 667777777777776 444 5777


Q ss_pred             CCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccch
Q 005168          277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV  356 (710)
Q Consensus       277 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  356 (710)
                      +..|+.|.++.|.|. .+|+...+.++++..||+..|++++            .|+.+.-+.+|+.||+++|.+++ .|.
T Consensus       227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke------------~Pde~clLrsL~rLDlSNN~is~-Lp~  292 (565)
T KOG0472|consen  227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE------------VPDEICLLRSLERLDLSNNDISS-LPY  292 (565)
T ss_pred             cHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc------------CchHHHHhhhhhhhcccCCcccc-CCc
Confidence            777777777777776 7777777677777777777776664            56666666667777777777663 455


Q ss_pred             hhcCCCCCCEEECCCCcCcccCCCCCCCC---CcceEEc--cCccccccccc-cCCCccCcccCChhhhcCCCccEEecC
Q 005168          357 EFCQLYSLQILDISDNNISGSLPSCFHPL---SIEQVHL--SKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILG  430 (710)
Q Consensus       357 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~~---~L~~L~l--~~n~l~~~~~~-~l~~n~~~~~~~~~~~~l~~L~~L~L~  430 (710)
                      +++++ .|+.|-+.+|.+..+..+.....   -|++|+=  ....+...... .-......+..|+ ...+-+.+.|+++
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~-~~~~i~tkiL~~s  370 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD-IYAIITTKILDVS  370 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc-hhhhhhhhhhccc
Confidence            56666 67777777776654332222211   0111110  00000000000 0000000011111 1123456777777


Q ss_pred             CCcccccCCcccCCCC--CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceec
Q 005168          431 HNNLEGEVPVQLCELN--QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ  508 (710)
Q Consensus       431 ~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (710)
                      +-+++..+.+.|....  -...++++.|++. .+|..+..+.-...                    ........+.+++.
T Consensus       371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT--------------------~l~lsnn~isfv~~  429 (565)
T KOG0472|consen  371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT--------------------DLVLSNNKISFVPL  429 (565)
T ss_pred             ccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH--------------------HHHhhcCccccchH
Confidence            7777744333443322  2667777777775 34433322110000                    00000000111111


Q ss_pred             -ccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCC
Q 005168          509 -GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL  587 (710)
Q Consensus       509 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L  587 (710)
                       ...+++|..|+|++|-+. .+|..++++..|+.||+++|++.. .|.....+..++.+-.++|++....|+.+..+.+|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             HHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence             133678999999999998 688899999999999999999984 57777778888888889999998888889999999


Q ss_pred             CEEeccCCccccccCCCccccccCCcccccCCCCC
Q 005168          588 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL  622 (710)
Q Consensus       588 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~  622 (710)
                      ..||+.+|.+... |..++.+.++..+.+.|||+.
T Consensus       508 ~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence            9999999999865 445899999999999999986

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-34  Score=302.37  Aligned_cols=492  Identities=25%  Similarity=0.271  Sum_probs=309.0

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC-------CcccccEEecCCCcc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-------KFVVSKELYLDDTGF   74 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~   74 (710)
                      +|.|..+++-|+..-+..-. ++.|+++.|-+- ..|.+.....-+|+.||+++|.+.       .+++|+.|+++.|.+
T Consensus         3 vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQILNNEA-LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCcccchhhccHHH-HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence            56677777755555444333 777777777554 344445555556777777777654       445666777777777


Q ss_pred             eeecCHHhhcCCCCCCEEEccCCcCCCC-------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccccc
Q 005168           75 KGTLDIREFDSFNNLEVLDMSYNKIDNL-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITES  147 (710)
Q Consensus        75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~  147 (710)
                      . ..|. ...++.+|+++.|.+|.+...       .+|+.|+++.|++. ..| ..+..+..+..+..++|.....    
T Consensus        81 ~-~vp~-s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~----  152 (1081)
T KOG0618|consen   81 R-SVPS-SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR----  152 (1081)
T ss_pred             h-hCch-hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh----
Confidence            6 6665 777777777777777765544       56677777777665 233 2355566666777777722111    


Q ss_pred             ccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccC
Q 005168          148 HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHS  227 (710)
Q Consensus       148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  227 (710)
                          .+...++.+++ ..+.+.+.++..+..+++  .++++.|.+.. .  . ...+++|+.+....|++....-    .
T Consensus       153 ----lg~~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-~--d-ls~~~~l~~l~c~rn~ls~l~~----~  217 (1081)
T KOG0618|consen  153 ----LGQTSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-L--D-LSNLANLEVLHCERNQLSELEI----S  217 (1081)
T ss_pred             ----hccccchhhhh-hhhhcccchhcchhhhhe--eeecccchhhh-h--h-hhhccchhhhhhhhcccceEEe----c
Confidence                11123666666 555555666665555554  68888777661 1  1 1466777777777776653221    2


Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      -++++.|+.++|.++ .+....  ...+|+.++++.|+++. .|++.+.+.+|+.++..+|++. .+|..++ ...+|+.
T Consensus       218 g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~  291 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVS  291 (1081)
T ss_pred             CcchheeeeccCcce-eecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHH
Confidence            356778888888777 332222  13478888888888774 4577778888888888888886 7777777 4777888


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC-CCEEECCCCcCcccCCCC-CCCC
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILDISDNNISGSLPSC-FHPL  385 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~-~~~~  385 (710)
                      |++..|.+..            +|....+++.|++|+|..|++....+..|.-... |+.|+.+.|.+...+... ....
T Consensus       292 l~~~~nel~y------------ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~  359 (1081)
T KOG0618|consen  292 LSAAYNELEY------------IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA  359 (1081)
T ss_pred             HHhhhhhhhh------------CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence            8777777763            5666667778888888888777554444444443 677777777776554211 1145


Q ss_pred             CcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168          386 SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC  465 (710)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  465 (710)
                      .|+.|++.+|.++.             ..-..+.+..+|+.|+|++|++...+...+.++..|++|+||+|.++ .+|..
T Consensus       360 ~Lq~LylanN~Ltd-------------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  360 ALQELYLANNHLTD-------------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             HHHHHHHhcCcccc-------------cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            56666655555543             33334556677777777777777544445667777777777777776 34444


Q ss_pred             cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCC
Q 005168          466 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS  545 (710)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  545 (710)
                      ...+                                           +.|++|...+|.+. ..| .+..+++|+.+|+|
T Consensus       426 va~~-------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  426 VANL-------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             HHhh-------------------------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            4432                                           36777777777776 445 66777777777777


Q ss_pred             CccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCC
Q 005168          546 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN  595 (710)
Q Consensus       546 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N  595 (710)
                      .|.++...-..-..-++|++||+++|.-.......|..++++...++.-|
T Consensus       461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            77776553322222267777777777644355555666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.6e-33  Score=284.38  Aligned_cols=350  Identities=27%  Similarity=0.412  Sum_probs=200.9

Q ss_pred             CccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcc-cCChh
Q 005168          170 VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG-HIPVE  248 (710)
Q Consensus       170 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~-~~~~~  248 (710)
                      +.+|.....++.++.|.+.+..+. .+|+.+ +.+.+|++|.+.+|++.... ..++.++.|+.+++.+|++.. -+|.+
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d   98 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD   98 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch
Confidence            445555555555666666554443 455554 45566666666666554322 334555666666666665542 25556


Q ss_pred             hhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168          249 IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG  328 (710)
Q Consensus       249 ~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~  328 (710)
                      +|. +..|..|||++|+++ ..|..+..-+++-+|+||+|+|. .||..+|.++..|-+||||+|++.            
T Consensus        99 iF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe------------  163 (1255)
T KOG0444|consen   99 IFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE------------  163 (1255)
T ss_pred             hcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh------------
Confidence            655 556666666666665 45555566666666666666665 666666666666666666666554            


Q ss_pred             CcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc-ccCCCCCC-CCCcceEEccCccccccccccCC
Q 005168          329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS-GSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLS  406 (710)
Q Consensus       329 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~-~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~  406 (710)
                      ..|+.+..+..|++|+|++|.+....-..+..+.+|++|.+++.+-+ ...|..+. +.+|..++++.|.+.        
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--------  235 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--------  235 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--------
Confidence            35555666666666666666555444444444555555555554332 12222222 455555555555444        


Q ss_pred             CccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccc
Q 005168          407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFE  486 (710)
Q Consensus       407 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (710)
                            .+|..+-.+++|+.|+|++|+|++ .........+|+.|++|.|+++ ..|++...                  
T Consensus       236 ------~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK------------------  289 (1255)
T KOG0444|consen  236 ------IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK------------------  289 (1255)
T ss_pred             ------cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh------------------
Confidence                  555666666666666666666653 2223344556666666666665 45555544                  


Q ss_pred             cceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCE
Q 005168          487 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIES  565 (710)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  565 (710)
                                               ++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. +.|+.+..+..|+.
T Consensus       290 -------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  290 -------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK  343 (1255)
T ss_pred             -------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence                                     2356666666666543 24566666666666666666665 55666666666666


Q ss_pred             EeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          566 LDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       566 L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      |.|++|++. .+|+++.-++.|+.||+..||-.
T Consensus       344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            666666666 56666666666666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=7.3e-32  Score=273.84  Aligned_cols=372  Identities=27%  Similarity=0.310  Sum_probs=303.4

Q ss_pred             CCCCCCEEEccCCcCc-ccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCc
Q 005168          178 HQHDLEYVRLSHIKMN-GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSL  256 (710)
Q Consensus       178 ~~~~L~~L~ls~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L  256 (710)
                      .++-++-+|+++|.++ +.+|... ...++++-|.+.+.++. .+|..++.+.+|++|.+++|++. .+-..+.. +|.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhh
Confidence            4566778899999888 4778776 78889999999888775 46778888899999999999887 55555555 7889


Q ss_pred             cEEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          257 YVFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       257 ~~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      +.+++++|++.. -+|..+-.+..|+.||||+|++. ++|...- .-+++-.|+||+|.|..           +....|.
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Iet-----------IPn~lfi  147 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIET-----------IPNSLFI  147 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCcccc-----------CCchHHH
Confidence            999999888763 34555667888999999999998 8888765 46778888887777764           5556788


Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC-CCCCcceEEccCccccccccccCCCccCcccC
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI  414 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~  414 (710)
                      +++.|-.|+|++|++.. .|.....+..|++|+|++|.+.-..-..+ .+.+|+.|++++.+-+-            ..+
T Consensus       148 nLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------~N~  214 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------DNI  214 (1255)
T ss_pred             hhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------------hcC
Confidence            99999999999999984 56667889999999999998863322222 26788888888776442            257


Q ss_pred             ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168          415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP  494 (710)
Q Consensus       415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (710)
                      |.++.++.+|..++++.|.+. ..|+.+-.+++|+.|+||+|+++...- +.+.                          
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~--------------------------  266 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE--------------------------  266 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH--------------------------
Confidence            888899999999999999998 889999999999999999999984311 1100                          


Q ss_pred             CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC-CCchhhcCCccCCEEeCcCCcC
Q 005168          495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG-LIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                       -.+|++|++|.|+++ .+|.++..+++|+.|.+.+|+++. -+|..++.+..|+.+..++|.+
T Consensus       267 -----------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  267 -----------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             -----------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence                             127999999999999 789999999999999999999873 3688999999999999999999


Q ss_pred             cccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       574 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      . ..|+.+..+..|+.|.|+.|.+.+ .|+.+--++.+..+++..||-+.-+|.
T Consensus       329 E-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  329 E-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             c-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCC
Confidence            9 999999999999999999999986 577777778889999999998876653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=3.2e-31  Score=281.84  Aligned_cols=406  Identities=24%  Similarity=0.293  Sum_probs=281.5

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC-------CcccccEEecCCCcc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-------KFVVSKELYLDDTGF   74 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~   74 (710)
                      |++++|.+-..+-+...+.-+|+.||+++|.+. .+| ..+..+.+|+.|+++.|.|.       ++.+|+++.|.+|..
T Consensus        26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l  103 (1081)
T KOG0618|consen   26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL  103 (1081)
T ss_pred             hhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence            567777776666555666666888888888887 677 77888888888888888765       667788888888888


Q ss_pred             eeecCHHhhcCCCCCCEEEccCCcCCCC-------C-------------------CCcEEEccccccccccCcccccCCC
Q 005168           75 KGTLDIREFDSFNNLEVLDMSYNKIDNL-------V-------------------VPQELRLSDNHFRIPISLEPLFNHS  128 (710)
Q Consensus        75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~-------------------~L~~L~L~~~~l~~~~~~~~l~~l~  128 (710)
                      . .+|. .+..+.+|++|++|+|.|...       .                   ..+++++..+.+.+.+.. ...++.
T Consensus       104 ~-~lP~-~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~-~i~~l~  180 (1081)
T KOG0618|consen  104 Q-SLPA-SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI-DIYNLT  180 (1081)
T ss_pred             h-cCch-hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc-chhhhh
Confidence            6 7777 888888888888888877655       2                   244445554444432221 122222


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCc
Q 005168          129 RLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA  208 (710)
Q Consensus       129 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~  208 (710)
                      .  .|+|++|.+....      .....+++.+.. ..+.+.    ......++++.|+.++|.++...+..   ...+++
T Consensus       181 ~--~ldLr~N~~~~~d------ls~~~~l~~l~c-~rn~ls----~l~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~  244 (1081)
T KOG0618|consen  181 H--QLDLRYNEMEVLD------LSNLANLEVLHC-ERNQLS----ELEISGPSLTALYADHNPLTTLDVHP---VPLNLQ  244 (1081)
T ss_pred             e--eeecccchhhhhh------hhhccchhhhhh-hhcccc----eEEecCcchheeeeccCcceeecccc---ccccce
Confidence            2  3666666554111      111223333333 222111    11113367777777777776333221   346778


Q ss_pred             EEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCC
Q 005168          209 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN  288 (710)
Q Consensus       209 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n  288 (710)
                      .++++++++.+.. ..+..+.+|+.++..+|.++ .+|..++. ..+|+.|....|.+. -+|...++++.|++|+|..|
T Consensus       245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence            8888888877644 77777888888888888887 77777776 678888888888887 44555677888888888888


Q ss_pred             ccCCcCChhhhcCCCC-CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEE
Q 005168          289 QLTGEIPEHLAVGCVN-LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL  367 (710)
Q Consensus       289 ~l~~~i~~~~~~~l~~-L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  367 (710)
                      .+. .+|...+.-... |+.|+.+.|++..           .....=..++.|+.|++.+|.+++.....+.+.++|+.|
T Consensus       321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-----------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  321 NLP-SLPDNFLAVLNASLNTLNVSSNKLST-----------LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL  388 (1081)
T ss_pred             ccc-ccchHHHhhhhHHHHHHhhhhccccc-----------cccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence            887 777776654444 6666666666543           221122346788899999999988777778888999999


Q ss_pred             ECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCC
Q 005168          368 DISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN  446 (710)
Q Consensus       368 ~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  446 (710)
                      +|++|++...+...+. ...|++|++|+|+++              .+|.....+..|++|...+|.+. ..| .+..++
T Consensus       389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~  452 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT--------------TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP  452 (1081)
T ss_pred             eecccccccCCHHHHhchHHhHHHhcccchhh--------------hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence            9999999877776666 778888888888777              67778888888999999988887 556 678888


Q ss_pred             CCCEEEccCCcccc
Q 005168          447 QLQLLDLSNNSLHG  460 (710)
Q Consensus       447 ~L~~L~L~~n~l~~  460 (710)
                      .|+.+|++.|+++.
T Consensus       453 qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSE  466 (1081)
T ss_pred             cceEEecccchhhh
Confidence            99999999888764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=1e-28  Score=239.02  Aligned_cols=308  Identities=23%  Similarity=0.264  Sum_probs=185.9

Q ss_pred             CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168          255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL  334 (710)
Q Consensus       255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~  334 (710)
                      ...+++|..|+|+.+.+.+|..+++|+.||||+|.|+ .|...+|+|+++|..|-+.+          +|+|+.+..+.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg----------~NkI~~l~k~~F  136 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG----------NNKITDLPKGAF  136 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc----------CCchhhhhhhHh
Confidence            4455555555555555555555555555555555555 55555555555544443222          122222444455


Q ss_pred             cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccc-cCCCccCcc
Q 005168          335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-DLSYNLLNG  412 (710)
Q Consensus       335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~l~~n~~~~  412 (710)
                      +++..|+-|.+.-|++.-+..++|..++++..|.+.+|.+..+....|. +..++.+++..|.+...... .+.  .+..
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla--~~~a  214 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA--DDLA  214 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh--hHHh
Confidence            5555555555555555555666666666666666666666666555555 55666666666654321100 000  0000


Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCC-CCcccccccccccCCCCCcccccccee
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNSSSLDEKFEISFF  490 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (710)
                      ..|..+++.....-..+.+.++..+.+..|. .+.++..--.+.+...++-| .+|                        
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf------------------------  270 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF------------------------  270 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH------------------------
Confidence            1122233333333334444444433332221 11111111111111111111 222                        


Q ss_pred             ecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168          491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY  570 (710)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  570 (710)
                                         +.+++|++|+|++|+++++.+.+|.++..+++|.|..|+|..+...+|.++..|+.|+|.+
T Consensus       271 -------------------~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  271 -------------------KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD  331 (498)
T ss_pred             -------------------hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence                               3377999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCcccccCCCCCEEeccCCcccccc-CCCccccccCCcccccCCC
Q 005168          571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-LEWTAQFATFNKSSYEGNT  620 (710)
Q Consensus       571 N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~~n~  620 (710)
                      |+|+...|.+|..+.+|..|++-.|||.|.| ..|+..|..-.  ...|||
T Consensus       332 N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~--~~~~~~  380 (498)
T KOG4237|consen  332 NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK--SVVGNP  380 (498)
T ss_pred             CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC--CCCCCC
Confidence            9999999999999999999999999999998 45665543322  256666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=5e-26  Score=220.49  Aligned_cols=360  Identities=19%  Similarity=0.171  Sum_probs=242.6

Q ss_pred             CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEccc-CcCcccCChhhhhcCCCccE
Q 005168          180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN-NNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~-n~i~~~~~~~~~~~~~~L~~  258 (710)
                      +...++++..|.|+ .+|...|+.+++||.|+|++|+|+.+.|++|.+++++..|-+.+ |+|+ .+|...|..+..++.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            35778888888888 56666668999999999999999999999999998887766555 8888 889888888888888


Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCe--------------------
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG--------------------  318 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------------------  318 (710)
                      |.+.-|++.-+..++|..+++|..|.+..|.+. .++...|.++.+++.+.+..|++...                    
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            988888888888888999999999999999988 88888888899999999888884311                    


Q ss_pred             ------------------------------eeccCccCccCcC-ccccCCCccceeeCccCccccccchhhcCCCCCCEE
Q 005168          319 ------------------------------LYLTNNSLSGNIP-GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL  367 (710)
Q Consensus       319 ------------------------------l~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  367 (710)
                                                    -..+.+...++.| ..|..+++|++|+|++|+++++.+.+|.++..++.|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence                                          0111222223333 457888888888888888888888888888888888


Q ss_pred             ECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-----cCCcc
Q 005168          368 DISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-----EVPVQ  441 (710)
Q Consensus       368 ~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~  441 (710)
                      .|..|++..+....|. +..|+.|++.+|+++.             ..|.+|..+.+|.+|++-.|.+.-     +.-++
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-------------~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W  370 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-------------VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW  370 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEE-------------EecccccccceeeeeehccCcccCccchHHHHHH
Confidence            8888888877777777 7778888666666554             667778888888888887766421     00000


Q ss_pred             -----------cCCCCCCCEEEccCCccccc---CCCCcccccccccccCCCCCccccccceeecCCCcceeecccccee
Q 005168          442 -----------LCELNQLQLLDLSNNSLHGS---IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIY  507 (710)
Q Consensus       442 -----------~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (710)
                                 -+.-..++.+.+++..+...   -|+..+-.           .....++..-...+-+.++.+.... .
T Consensus       371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~-----------~s~~cP~~c~c~~tVvRcSnk~lk~-l  438 (498)
T KOG4237|consen  371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCL-----------TSSPCPPPCTCLDTVVRCSNKLLKL-L  438 (498)
T ss_pred             HhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCC-----------CCCCCCCCcchhhhhHhhcccchhh-c
Confidence                       12233577888887765422   11111100           0000000000001111222222111 1


Q ss_pred             cccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCC
Q 005168          508 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN  571 (710)
Q Consensus       508 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  571 (710)
                      ....+...++|++++|.++. +|..  .+++| .+|+++|+++.+....|.+++.|.+|-|++|
T Consensus       439 p~~iP~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  439 PRGIPVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCCCCchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            12234456667777777773 3433  45556 6777777777666667777777777776665

>PLN03210 Resistant to P

Probab=99.88  E-value=4.8e-21  Score=228.54  Aligned_cols=300  Identities=21%  Similarity=0.235  Sum_probs=173.7

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM  309 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  309 (710)
                      +|+.|++.++.++ .+|..+.  +.+|+.|++.+|++. ..+..+..+++|+.|+|+++.....+|.  +..+++|++|+
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~  663 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLK  663 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEE
Confidence            3555555555554 5554432  345555555555554 2344445555555555555432224443  22345555555


Q ss_pred             ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcce
Q 005168          310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ  389 (710)
Q Consensus       310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~  389 (710)
                      +++|....           .+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|..  +.+|+.
T Consensus       664 L~~c~~L~-----------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~  729 (1153)
T PLN03210        664 LSDCSSLV-----------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISW  729 (1153)
T ss_pred             ecCCCCcc-----------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCe
Confidence            55443221           234445555555555555543322333322 4445555555554433222211  234455


Q ss_pred             EEccCccccccccc---------cCCC-------ccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEc
Q 005168          390 VHLSKNMLHRQLKR---------DLSY-------NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL  453 (710)
Q Consensus       390 L~l~~n~l~~~~~~---------~l~~-------n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  453 (710)
                      |++++|.+......         ++..       +.+....+..+...++|+.|++++|.....+|..+.++++|+.|++
T Consensus       730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L  809 (1153)
T PLN03210        730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI  809 (1153)
T ss_pred             eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence            55544443321100         0000       0111112222334568899999988777678888888999999999


Q ss_pred             cCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccc
Q 005168          454 SNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI  533 (710)
Q Consensus       454 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  533 (710)
                      ++|...+.+|... +                                           +++|+.|++++|......|.. 
T Consensus       810 s~C~~L~~LP~~~-~-------------------------------------------L~sL~~L~Ls~c~~L~~~p~~-  844 (1153)
T PLN03210        810 ENCINLETLPTGI-N-------------------------------------------LESLESLDLSGCSRLRTFPDI-  844 (1153)
T ss_pred             CCCCCcCeeCCCC-C-------------------------------------------ccccCEEECCCCCcccccccc-
Confidence            8876544555432 1                                           458999999998655455543 


Q ss_pred             cccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcc
Q 005168          534 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL  597 (710)
Q Consensus       534 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l  597 (710)
                        .++|++|+|++|.++.+ |..+..+++|+.|++++|+-...+|.....+++|+.+++++|+-
T Consensus       845 --~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        845 --STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             --ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence              36899999999999864 67889999999999999654446777788899999999998853

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=2.3e-20  Score=222.67  Aligned_cols=336  Identities=22%  Similarity=0.238  Sum_probs=233.8

Q ss_pred             CCCCCcccEEEecCCCC------CCCccChhccCC-CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCcc
Q 005168          151 TAPNFQLQSLSLSSSYG------DGVTFPKFLYHQ-HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWL  223 (710)
Q Consensus       151 ~~~~~~L~~L~l~~~~~------~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  223 (710)
                      +.++.+|+.|.+ ....      ....+|..+..+ .+|+.|++.++.+. .+|..+  ...+|+.|++.++++.. .+.
T Consensus       554 F~~m~~L~~L~~-~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~  628 (1153)
T PLN03210        554 FKGMRNLLFLKF-YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWD  628 (1153)
T ss_pred             HhcCccccEEEE-ecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccc
Confidence            445667788877 3321      122345555554 35888888877664 556554  56788888888887764 456


Q ss_pred             CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168          224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV  303 (710)
Q Consensus       224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  303 (710)
                      .+..+++|+.|+++++...+.+|. +. .+++|+.|++++|.....+|..+.++++|+.|++++|.....+|...  +++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~  704 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK  704 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence            667788888888887653336664 22 36788888888876666777778888888888888864333777655  577


Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc------
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS------  377 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~------  377 (710)
                      +|++|++++|...+           ..|.   ..++|++|++++|.+.. .|..+ .+++|++|.+.++.....      
T Consensus       705 sL~~L~Lsgc~~L~-----------~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        705 SLYRLNLSGCSRLK-----------SFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCEEeCCCCCCcc-----------cccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccc
Confidence            88888887775432           2232   23577888888888764 34433 567788887776443211      


Q ss_pred             -CCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccC
Q 005168          378 -LPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  455 (710)
Q Consensus       378 -~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  455 (710)
                       .+..+. +++|+.|++++|..             ...+|.+++++++|+.|++++|..-+.+|... .+++|+.|++++
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~-------------l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPS-------------LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             cchhhhhccccchheeCCCCCC-------------ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence             111111 45778886666543             33678889999999999999986544666655 789999999999


Q ss_pred             CcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc
Q 005168          456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN  535 (710)
Q Consensus       456 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  535 (710)
                      |.....+|..                                              +++++.|+|++|.++ .+|..+..
T Consensus       835 c~~L~~~p~~----------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~  867 (1153)
T PLN03210        835 CSRLRTFPDI----------------------------------------------STNISDLNLSRTGIE-EVPWWIEK  867 (1153)
T ss_pred             CCcccccccc----------------------------------------------ccccCEeECCCCCCc-cChHHHhc
Confidence            8654333321                                              347999999999998 57888999


Q ss_pred             cCCCCEEeCCCc-cCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          536 LTRIQTLNLSYN-NLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       536 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                      +++|+.|+|++| ++.. .|..+..+++|+.|++++|.-
T Consensus       868 l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcc
Confidence            999999999985 5655 555678899999999999853

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.9e-21  Score=213.40  Aligned_cols=263  Identities=27%  Similarity=0.327  Sum_probs=167.1

Q ss_pred             CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168          231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML  310 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  310 (710)
                      -..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    .++|++|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeec
Confidence            446666666666 6666553   266667777766663 332   2466777777777766 55532    346666666


Q ss_pred             cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceE
Q 005168          311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV  390 (710)
Q Consensus       311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L  390 (710)
                      ++|.+..            +|..   .++|+.|++++|+++.. |.   ..++|+.|++++|.+.+++.   .+..|+.|
T Consensus       270 s~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L  327 (788)
T PRK15387        270 FSNPLTH------------LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LPSELCKL  327 (788)
T ss_pred             cCCchhh------------hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---Cccccccc
Confidence            6665542            2221   24566667777766643 32   23567777777777765433   13456666


Q ss_pred             EccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168          391 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT  470 (710)
Q Consensus       391 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  470 (710)
                      ++++|.++.              +|..   ..+|++|+|++|++++ +|..   ..+|+.|++++|.+++ +|..     
T Consensus       328 ~Ls~N~L~~--------------LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----  380 (788)
T PRK15387        328 WAYNNQLTS--------------LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----  380 (788)
T ss_pred             ccccCcccc--------------cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----
Confidence            666655542              2221   1468888888888874 3332   3467778888888763 3321     


Q ss_pred             ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168          471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT  550 (710)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  550 (710)
                                                               ++.|+.|++++|.+++ +|..   .++|+.|++++|.++
T Consensus       381 -----------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        381 -----------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT  415 (788)
T ss_pred             -----------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC
Confidence                                                     2367888888888885 3432   357888888888888


Q ss_pred             CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCc
Q 005168          551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT  605 (710)
Q Consensus       551 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  605 (710)
                      +++ ..   ..+|+.|++++|+|+ .+|+.+..+++|+.|++++|++++..+..+
T Consensus       416 sIP-~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        416 SLP-ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCC-cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            753 32   246788888888888 678888888888899999998887665533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=7.4e-20  Score=202.33  Aligned_cols=264  Identities=27%  Similarity=0.327  Sum_probs=132.9

Q ss_pred             CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEE
Q 005168          181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN  260 (710)
Q Consensus       181 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~  260 (710)
                      .-..|+++.+.++ .+|..+.   ++|+.|.+.+|+++.. |.   .+++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3445666666555 3454431   3555666665555542 21   1355556666666555 44431    23555555


Q ss_pred             ccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCcc
Q 005168          261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL  340 (710)
Q Consensus       261 L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L  340 (710)
                      +++|.+.. +|..   .++|+.|++++|+++ .+|.    ..++|++|++++|.+..            +|..   ...|
T Consensus       269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~------------Lp~l---p~~L  324 (788)
T PRK15387        269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS------------LPAL---PSEL  324 (788)
T ss_pred             ccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc------------CCCC---cccc
Confidence            55555552 2221   234555555555555 4443    13455555555554442            1111   1234


Q ss_pred             ceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhc
Q 005168          341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE  420 (710)
Q Consensus       341 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~  420 (710)
                      +.|++++|.++.+ |. +  ..+|+.|++++|++.++++                                     .   
T Consensus       325 ~~L~Ls~N~L~~L-P~-l--p~~Lq~LdLS~N~Ls~LP~-------------------------------------l---  360 (788)
T PRK15387        325 CKLWAYNNQLTSL-PT-L--PSGLQELSVSDNQLASLPT-------------------------------------L---  360 (788)
T ss_pred             cccccccCccccc-cc-c--ccccceEecCCCccCCCCC-------------------------------------C---
Confidence            4455555555432 21 0  1245555555555443221                                     1   


Q ss_pred             CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       421 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      .++|+.|++++|++.. +|..   ..+|+.|++++|.+++ +|..                                   
T Consensus       361 p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-----------------------------------  400 (788)
T PRK15387        361 PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-----------------------------------  400 (788)
T ss_pred             Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-----------------------------------
Confidence            1345556666666653 3322   2356666666666653 2211                                   


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ  580 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  580 (710)
                                 ++.|+.|++++|.+++ +|..   ..+|+.|++++|+++.+ |+.+.++++|+.|+|++|++++..+..
T Consensus       401 -----------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        401 -----------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             -----------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHH
Confidence                       1256666666666664 3332   23566677777777643 555666777777777777776655554


Q ss_pred             c
Q 005168          581 L  581 (710)
Q Consensus       581 l  581 (710)
                      +
T Consensus       465 L  465 (788)
T PRK15387        465 L  465 (788)
T ss_pred             H
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=7.3e-19  Score=195.97  Aligned_cols=120  Identities=25%  Similarity=0.319  Sum_probs=67.1

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM  309 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  309 (710)
                      +...|+++++.++ .+|..+.   +.++.|++++|+++. +|..+.  ++|++|++++|.++ .+|..++   ++|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            3456666666666 5665442   366667777766663 333322  46677777777666 5665443   3566666


Q ss_pred             ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc
Q 005168          310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS  377 (710)
Q Consensus       310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~  377 (710)
                      +++|.+..            +|..+.  ++|+.|++++|++.. +|..+.  ++|+.|++++|+++++
T Consensus       248 Ls~N~L~~------------LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        248 LSINRITE------------LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             CcCCccCc------------CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC
Confidence            66665542            333332  356666666666653 343332  3566666666666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=4.9e-18  Score=189.39  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             CCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168          422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  459 (710)
                      ++|+.|++++|+++ .+|..+  .++|+.|++++|+++
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            45666666666655 233333  245666666666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.5e-18  Score=180.30  Aligned_cols=61  Identities=26%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CCCCEEeCCCccCCCC----CchhhcCCccCCEEeCcCCcCccc----CCcccccC-CCCCEEeccCCcc
Q 005168          537 TRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPHQLVEL-KTLEVFSVAYNNL  597 (710)
Q Consensus       537 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~l~~l-~~L~~L~l~~N~l  597 (710)
                      +.|++|++++|.++..    ....+..+++|+.+++++|.+...    ....+... +.++.+++.+|+|
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            5666666666666521    123444455666666666666632    22223333 5566666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.1e-17  Score=173.70  Aligned_cols=266  Identities=23%  Similarity=0.207  Sum_probs=162.0

Q ss_pred             EEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCc----CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168          258 VFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG  332 (710)
Q Consensus       258 ~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~  332 (710)
                      .|+|..+.+++ .....|..+..|+.|+++++.++..    ++.. ....+++++++++++.+..     ........+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~   75 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGR-----IPRGLQSLLQ   75 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCC-----cchHHHHHHH
Confidence            45666666652 2334456667788888888877521    2222 2245668888877766541     0000112234


Q ss_pred             cccCCCccceeeCccCccccccchhhcCCCC---CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCcc
Q 005168          333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYS---LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL  409 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~  409 (710)
                      .+..+++|++|++++|.+....+..+..+.+   |++|++++|++.+....                             
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----------------------------  126 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-----------------------------  126 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-----------------------------
Confidence            4556677777777777766544555544444   77777766665421000                             


Q ss_pred             CcccCChhhhcC-CCccEEecCCCccccc----CCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccc
Q 005168          410 LNGSIPDWIGEL-SQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK  484 (710)
Q Consensus       410 ~~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (710)
                         .+...+..+ ++|+.|++++|.+++.    .+..+..+++|++|++++|.+++.....+..                
T Consensus       127 ---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~----------------  187 (319)
T cd00116         127 ---LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE----------------  187 (319)
T ss_pred             ---HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH----------------
Confidence               112233444 6778888888777632    2334566677888888888776311100000                


Q ss_pred             cccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCC----CccccccCCCCEEeCCCccCCCCCchhhc--
Q 005168          485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHI----PPQIGNLTRIQTLNLSYNNLTGLIPSTFS--  558 (710)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--  558 (710)
                                             .....++|+.|++++|.+++..    +..+..+++|++|++++|.+++.....+.  
T Consensus       188 -----------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~  244 (319)
T cd00116         188 -----------------------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA  244 (319)
T ss_pred             -----------------------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence                                   0001247888888888876433    33456788999999999998864333322  


Q ss_pred             ---CCccCCEEeCcCCcCcc----cCCcccccCCCCCEEeccCCccccc
Q 005168          559 ---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       559 ---~l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                         ..+.|++|++++|.++.    .+...+..+++|+.+++++|.+...
T Consensus       245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence               23799999999999972    3344566678999999999999854

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.8e-18  Score=145.57  Aligned_cols=182  Identities=29%  Similarity=0.481  Sum_probs=134.6

Q ss_pred             CCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc
Q 005168          361 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV  440 (710)
Q Consensus       361 l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  440 (710)
                      +...+.|.+|+|+++.++|..-.+.+|+.|++++|+++              .+|..++.+++|+.|+++-|++. +.|.
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--------------~lp~~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--------------ELPTSISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--------------hcChhhhhchhhhheecchhhhh-cCcc
Confidence            33444455555555554444444455555544444443              66777888999999999999998 7899


Q ss_pred             ccCCCCCCCEEEccCCccccc-CCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEE
Q 005168          441 QLCELNQLQLLDLSNNSLHGS-IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY  519 (710)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  519 (710)
                      .|+.++.|+.||+.+|++.+. .|..|-.                                           +..|+.|+
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~-------------------------------------------m~tlraly  133 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALY  133 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhH-------------------------------------------HHHHHHHH
Confidence            999999999999999998753 4555543                                           34788899


Q ss_pred             CcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC---CCCEEeccCCc
Q 005168          520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK---TLEVFSVAYNN  596 (710)
Q Consensus       520 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~---~L~~L~l~~N~  596 (710)
                      |+.|.+. .+|..++.+++|+.|.+.+|.+-.+ |..++.++.|++|++.+|+++ .+|..++.+.   +=+.+.+.+||
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence            9999998 7888899999999999999998744 678899999999999999999 5665555543   23456677888


Q ss_pred             cccccCC
Q 005168          597 LSGEILE  603 (710)
Q Consensus       597 l~~~~~~  603 (710)
                      |...+.+
T Consensus       211 wv~pIae  217 (264)
T KOG0617|consen  211 WVNPIAE  217 (264)
T ss_pred             CCChHHH
Confidence            8766543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.1e-17  Score=142.62  Aligned_cols=183  Identities=28%  Similarity=0.431  Sum_probs=151.7

Q ss_pred             CCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCc
Q 005168          378 LPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS  457 (710)
Q Consensus       378 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  457 (710)
                      .++.|.+..+++|.+++|.++              .+|..++.+.+|+.|++++|+++ ..|.+++.+++|+.|+++-|.
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~--------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr   90 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT--------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR   90 (264)
T ss_pred             cccccchhhhhhhhcccCcee--------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh
Confidence            345566778888888888776              67777899999999999999998 677789999999999999999


Q ss_pred             ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCCcccccc
Q 005168          458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNL  536 (710)
Q Consensus       458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l  536 (710)
                      +. ..|..|+.                                           +|.|+.|||.+|.+.. ..|+.|..+
T Consensus        91 l~-~lprgfgs-------------------------------------------~p~levldltynnl~e~~lpgnff~m  126 (264)
T KOG0617|consen   91 LN-ILPRGFGS-------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYM  126 (264)
T ss_pred             hh-cCccccCC-------------------------------------------CchhhhhhccccccccccCCcchhHH
Confidence            86 77888876                                           5589999999998865 578899999


Q ss_pred             CCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcccccc---CCc
Q 005168          537 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFAT---FNK  613 (710)
Q Consensus       537 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---~~~  613 (710)
                      +.|+.|+|++|.+. +.|..++++++|+.|.+.+|.+. .+|..+..+++|+.|.+.+|.++-..|+ +..+..   -..
T Consensus       127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v  203 (264)
T KOG0617|consen  127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQV  203 (264)
T ss_pred             HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHH
Confidence            99999999999998 55667899999999999999998 7888999999999999999999976665 344322   123


Q ss_pred             ccccCCCCC
Q 005168          614 SSYEGNTFL  622 (710)
Q Consensus       614 ~~~~~n~~~  622 (710)
                      ...+.|||.
T Consensus       204 ~r~E~NPwv  212 (264)
T KOG0617|consen  204 MRMEENPWV  212 (264)
T ss_pred             HhhhhCCCC
Confidence            345566664

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=4.7e-13  Score=149.36  Aligned_cols=118  Identities=35%  Similarity=0.585  Sum_probs=106.0

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcccc-ccCCcccccCCCCCCCCCC-CCCC
Q 005168          594 YNNLSGEILEWTAQF-ATFNKSSYEGNTFLCGLPL-PICR  631 (710)
Q Consensus       594 ~N~l~~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~-~~c~  631 (710)
                      +|++++.+|..+... .......+.+|+..|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 3455677899999998654 2563

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=3.5e-12  Score=120.38  Aligned_cols=132  Identities=27%  Similarity=0.270  Sum_probs=107.8

Q ss_pred             CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       421 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      ...|++++|++|.|+ .+..+..-.+.++.|++|+|.+..+-.  +.                                 
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La---------------------------------  326 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LA---------------------------------  326 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hh---------------------------------
Confidence            467999999999998 455667788999999999999874322  21                                 


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-c
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-H  579 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~  579 (710)
                                .+++|+.||||+|.++. ..++-..+.+.++|.|+.|.|..+  ..++.+-+|..||+++|+|..... .
T Consensus       327 ----------~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~  393 (490)
T KOG1259|consen  327 ----------ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN  393 (490)
T ss_pred             ----------hcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc
Confidence                      25689999999999984 444556788999999999999877  678888999999999999985433 3


Q ss_pred             ccccCCCCCEEeccCCcccccc
Q 005168          580 QLVELKTLEVFSVAYNNLSGEI  601 (710)
Q Consensus       580 ~l~~l~~L~~L~l~~N~l~~~~  601 (710)
                      .+.++|.|+.+.+.+||+....
T Consensus       394 ~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ccccccHHHHHhhcCCCccccc
Confidence            5788999999999999998754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=6.3e-11  Score=108.05  Aligned_cols=130  Identities=29%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             cCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCC
Q 005168          226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNL  305 (710)
Q Consensus       226 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L  305 (710)
                      .++.++++|+|++|.|+ .+. .+...+.+|+.|++++|.|+.+.  .+..++.|++|++++|+|+ .++..+...+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            34456777888888877 554 34334667888888888887553  4777888888888888887 6765554467888


Q ss_pred             cEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc---chhhcCCCCCCEEECC
Q 005168          306 QFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI---PVEFCQLYSLQILDIS  370 (710)
Q Consensus       306 ~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ls  370 (710)
                      ++|++++|.+.+.        .  .-..++.+++|+.|++.+|.+....   ...+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l--------~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDL--------N--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SC--------C--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCCh--------H--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888888887641        1  1234667788888888888776431   2336677888887754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=3.8e-12  Score=130.37  Aligned_cols=78  Identities=26%  Similarity=0.427  Sum_probs=40.7

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc---CCCCCEE
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE---LKTLEVF  590 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~---l~~L~~L  590 (710)
                      +|+.|.+..|++. ..|..+. --.|..||+|+|+++.+ |-.|..++.|++|-|.+|.+. ..|..+.-   ..=.++|
T Consensus       190 slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  190 SLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYL  265 (722)
T ss_pred             HHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeee
Confidence            3444444444443 2333333 23466677777777643 556667777777777777776 44544322   1223455


Q ss_pred             eccCC
Q 005168          591 SVAYN  595 (710)
Q Consensus       591 ~l~~N  595 (710)
                      +..-+
T Consensus       266 ~~qA~  270 (722)
T KOG0532|consen  266 STQAC  270 (722)
T ss_pred             cchhc
Confidence            55544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=4e-10  Score=120.47  Aligned_cols=59  Identities=32%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             CccEEEccCCcCcccCCccCcCCC-CCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCc
Q 005168          255 SLYVFNISMNALDGSIPSSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK  316 (710)
Q Consensus       255 ~L~~L~L~~n~i~~~~~~~f~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  316 (710)
                      .++.|++.+|.++.+. .....+. +|+.|++++|.+. .+|..+. .+++|+.|++++|++.
T Consensus       117 ~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~  176 (394)
T COG4886         117 NLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS  176 (394)
T ss_pred             ceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh
Confidence            4444444444444222 2222221 4444444444444 3332222 3444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=1.5e-11  Score=126.10  Aligned_cols=194  Identities=27%  Similarity=0.424  Sum_probs=143.5

Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      +..-...|++.|.+. .+|..+.. +..|+.+.|..|.+. .+|.++.++..|+.|||+.|+++ .+|..++  .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            344456788888887 88887765 568888888888887 66777888888888888888888 7888776  235778


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      |-+++|+++            .+|..++.+..|..|+.+.|.+. ..|..+.++.+|+.|++..|++...++... ...|
T Consensus       148 li~sNNkl~------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL  213 (722)
T KOG0532|consen  148 LIVSNNKLT------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL  213 (722)
T ss_pred             EEEecCccc------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence            887777776            46777778888888888888877 456667888888888888888876665544 5567


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCC---CCCCEEEccCC
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL---NQLQLLDLSNN  456 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n  456 (710)
                      .+||++.|++.              .+|-.|..|..|++|-|.+|.+. .+|..++-.   .=.++|+..-+
T Consensus       214 i~lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  214 IRLDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeeecccCcee--------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            77766666655              67777888888888888888887 455544332   23466666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=1.7e-10  Score=105.24  Aligned_cols=115  Identities=30%  Similarity=0.469  Sum_probs=34.9

Q ss_pred             cCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhc-CCCCCCEEeCCCCCCC------CcccccEEecCCCccee
Q 005168            4 LSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKID------KFVVSKELYLDDTGFKG   76 (710)
Q Consensus         4 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~-~l~~L~~L~Ls~n~l~------~l~~l~~L~L~~~~~~~   76 (710)
                      |+.+-|+.+.  .+.+..++++|+|.+|.|+ .|+  .++ .+.+|+.|+|++|.|+      .++.|++|++++|.++ 
T Consensus         4 lt~~~i~~~~--~~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-   77 (175)
T PF14580_consen    4 LTANMIEQIA--QYNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-   77 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----
T ss_pred             cccccccccc--ccccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-
Confidence            4445555322  2455667888888888887 564  455 5788888888888776      3455566666666665 


Q ss_pred             ecCHHhh-cCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCccc
Q 005168           77 TLDIREF-DSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN  141 (710)
Q Consensus        77 ~i~~~~~-~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~  141 (710)
                      .+.. .+ ..+|+|++|++++|+|..+                .....+..+++|+.|++.+|++.
T Consensus        78 ~i~~-~l~~~lp~L~~L~L~~N~I~~l----------------~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   78 SISE-GLDKNLPNLQELYLSNNKISDL----------------NELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             S-CH-HHHHH-TT--EEE-TTS---SC----------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cccc-chHHhCCcCCEEECcCCcCCCh----------------HHhHHHHcCCCcceeeccCCccc
Confidence            4544 33 3567777777777766653                23345677888888888888775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=4.6e-10  Score=120.03  Aligned_cols=136  Identities=35%  Similarity=0.482  Sum_probs=75.4

Q ss_pred             hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168          416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ  495 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (710)
                      ..+..+++|+.|++++|++.. .+......+.|+.|++++|.+....+. ...                           
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~---------------------------  207 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPE-IEL---------------------------  207 (394)
T ss_pred             hhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchh-hhh---------------------------
Confidence            334556666666666666662 333333556666666666666532221 100                           


Q ss_pred             cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                      +..|+++.+++|.+. ..+..+..+.++..+.+.+|++..+ +..++.++++++|++++|.++.
T Consensus       208 ----------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         208 ----------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             ----------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccc
Confidence                            224666666666433 2444555666666666666666543 3455566666666666666663


Q ss_pred             cCCcccccCCCCCEEeccCCccccc
Q 005168          576 KIPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       576 ~~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                      ..+  +..+.+++.|++++|.+...
T Consensus       270 i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         270 ISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccc--ccccCccCEEeccCcccccc
Confidence            322  55666666666666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=5.2e-11  Score=118.58  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             cCCCccEEecCCCcccccC-CcccCCCCCCCEEEccCCcccc
Q 005168          420 ELSQLSHLILGHNNLEGEV-PVQLCELNQLQLLDLSNNSLHG  460 (710)
Q Consensus       420 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  460 (710)
                      ..++|++|+++.|++..+. -..+..+++|+.|.+..|.++.
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            3578888888888885332 1234556778888888887763

>PLN03150 hypothetical protein; Provisional

Probab=98.97  E-value=1e-09  Score=122.69  Aligned_cols=114  Identities=32%  Similarity=0.492  Sum_probs=102.8

Q ss_pred             CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC
Q 005168          447 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI  526 (710)
Q Consensus       447 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  526 (710)
                      .++.|+|++|.+.+.+|..+..+                                           ++|+.|+|++|.+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L-------------------------------------------~~L~~L~Ls~N~l~  455 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL-------------------------------------------RHLQSINLSGNSIR  455 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC-------------------------------------------CCCCEEECCCCccc
Confidence            37889999999999888877664                                           48999999999999


Q ss_pred             CCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCC
Q 005168          527 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       527 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~  603 (710)
                      +.+|..+..+++|+.|+|++|.+++.+|+.+.++++|+.|+|++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus       456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999988764 5678899999998886553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=6.6e-11  Score=114.74  Aligned_cols=204  Identities=19%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             CCCCcccEEEecCCCCCCCccCh----hccCCCCCCEEEccCCc---CcccCChhH------hhcCCCCcEEEccCCccc
Q 005168          152 APNFQLQSLSLSSSYGDGVTFPK----FLYHQHDLEYVRLSHIK---MNGEFPNWL------LENNTKLATLFLVNDSLA  218 (710)
Q Consensus       152 ~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~ls~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~~~  218 (710)
                      .+...+.++++ +++.++....+    .+.+.++|+..++|+-.   ....+|..+      ...+++|+.|+|++|.+.
T Consensus        27 ~~~~s~~~l~l-sgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDL-SGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEec-cCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34446677777 55555444333    33455666666666431   112233321      123345555555555544


Q ss_pred             ccCccC----ccCCCCCCEEEcccCcCcccCChh-hhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc
Q 005168          219 GPFWLP----IHSHKRLGILDISNNNIRGHIPVE-IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE  293 (710)
Q Consensus       219 ~~~~~~----~~~~~~L~~L~ls~n~i~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~  293 (710)
                      ...+..    +.++..|++|.|.+|.+. ..... ++.   .|..|.         .......-+.|+++...+|++. .
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrle-n  171 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLE-N  171 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccc-c
Confidence            322222    233444555555555443 11110 010   111111         0112234467888888888886 4


Q ss_pred             CC----hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc----cchhhcCCCCCC
Q 005168          294 IP----EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP----IPVEFCQLYSLQ  365 (710)
Q Consensus       294 i~----~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  365 (710)
                      -+    ..+|+..+.|+.+.++.|.|..      ..+ ......|..+++|+.|+|.+|.++..    ....++.+++|+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~------eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRP------EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccC------chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            43    2446667888888888887653      111 12345678889999999999887643    456678888899


Q ss_pred             EEECCCCcCccc
Q 005168          366 ILDISDNNISGS  377 (710)
Q Consensus       366 ~L~ls~n~i~~~  377 (710)
                      .|++++|.+..-
T Consensus       245 El~l~dcll~~~  256 (382)
T KOG1909|consen  245 ELNLGDCLLENE  256 (382)
T ss_pred             eecccccccccc
Confidence            999999887643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.4e-10  Score=115.48  Aligned_cols=212  Identities=20%  Similarity=0.126  Sum_probs=121.9

Q ss_pred             CcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCc
Q 005168           60 KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ  139 (710)
Q Consensus        60 ~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~  139 (710)
                      ++.+|+++.|.++........+....|++++.||||.|-|+..               ..-......+++|+.|+++.|.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw---------------~~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW---------------FPVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH---------------HHHHHHHHhcccchhccccccc
Confidence            4455555555565554221113566788888888888866543               0000112334444444444444


Q ss_pred             ccccccccccCCCCCCcccEEEecCCCCCCCcc-ChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc
Q 005168          140 MNAEITESHSLTAPNFQLQSLSLSSSYGDGVTF-PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA  218 (710)
Q Consensus       140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  218 (710)
                      +..........  ..++++.|.+ +.|+++..- ...+..+|+|+.|++..|......... ...+..|++|+|++|.+.
T Consensus       184 l~~~~~s~~~~--~l~~lK~L~l-~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  184 LSNFISSNTTL--LLSHLKQLVL-NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI  259 (505)
T ss_pred             ccCCccccchh--hhhhhheEEe-ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc
Confidence            33222111111  2236677777 666655332 233457788888888877422111111 145677888888888765


Q ss_pred             ccCc-cCccCCCCCCEEEcccCcCcccCC--hh----hhhcCCCccEEEccCCcCccc-CCccCcCCCCCCEEeccCCcc
Q 005168          219 GPFW-LPIHSHKRLGILDISNNNIRGHIP--VE----IGDVLPSLYVFNISMNALDGS-IPSSFGNMKFLQLLDLSNNQL  290 (710)
Q Consensus       219 ~~~~-~~~~~~~~L~~L~ls~n~i~~~~~--~~----~~~~~~~L~~L~L~~n~i~~~-~~~~f~~l~~L~~L~Ls~n~l  290 (710)
                      .... ...+.++.|+.|.++.+++. .+.  +.    ....+++|++|++..|+|... .-..+..+++|+.|.+..|.+
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            4322 34567888888888888877 332  11    123478999999999998532 113445667888888888888


Q ss_pred             C
Q 005168          291 T  291 (710)
Q Consensus       291 ~  291 (710)
                      +
T Consensus       339 n  339 (505)
T KOG3207|consen  339 N  339 (505)
T ss_pred             c
Confidence            6

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.6e-10  Score=109.26  Aligned_cols=121  Identities=25%  Similarity=0.295  Sum_probs=85.7

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI   80 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~   80 (710)
                      +||||+|.|+ ...++..-.|.+++|++|+|.|. .+.  .+..+++|++||||+|.++                 .+..
T Consensus       288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-----------------~~~G  346 (490)
T KOG1259|consen  288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-----------------ECVG  346 (490)
T ss_pred             hccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-----------------hhhh
Confidence            4788888888 55566777888888888888887 554  4888888888888888876                 2222


Q ss_pred             HhhcCCCCCCEEEccCCcCCCC------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccc
Q 005168           81 REFDSFNNLEVLDMSYNKIDNL------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAE  143 (710)
Q Consensus        81 ~~~~~l~~L~~L~Ls~n~l~~~------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~  143 (710)
                       .-.++-+.++|.|+.|.+..+      -+|..||+++|++...-....++++|.|+.+.|.+|++...
T Consensus       347 -wh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  347 -WHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             -hHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence             334555666666666654433      45566666666666544556688899999999999987543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=3.7e-10  Score=109.61  Aligned_cols=207  Identities=18%  Similarity=0.166  Sum_probs=119.9

Q ss_pred             hhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEE
Q 005168           82 EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS  161 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~  161 (710)
                      ++..+|+|++|+||.|.|..-           .+.  .-...+.++..|++|.|.+|.+.......+..     -|.++.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~-----------g~~--~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-----al~~l~  148 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPK-----------GIR--GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-----ALFELA  148 (382)
T ss_pred             HHhcCCceeEeeccccccCcc-----------chH--HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-----HHHHHH
Confidence            456677888888888876532           001  01122456777888888887765443222100     011111


Q ss_pred             ecCCCCCCCccChhccCCCCCCEEEccCCcCcccCCh---hHhhcCCCCcEEEccCCccccc----CccCccCCCCCCEE
Q 005168          162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN---WLLENNTKLATLFLVNDSLAGP----FWLPIHSHKRLGIL  234 (710)
Q Consensus       162 l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  234 (710)
                                ..+....-+.|+++...+|++-+....   ..++..+.|+.+.+..|.|...    ....+..+++|++|
T Consensus       149 ----------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL  218 (382)
T KOG1909|consen  149 ----------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL  218 (382)
T ss_pred             ----------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceee
Confidence                      111223446677777777766543221   2345567777777777776532    22456778888888


Q ss_pred             EcccCcCcccCChhhh---hcCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcC---ChhhhcCCC
Q 005168          235 DISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEI---PEHLAVGCV  303 (710)
Q Consensus       235 ~ls~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~  303 (710)
                      ||.+|-++......+.   ..++.|++|++++|.+......+|     ...++|++|.+.+|.++..-   -.......+
T Consensus       219 dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~  298 (382)
T KOG1909|consen  219 DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP  298 (382)
T ss_pred             ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence            8888877633222221   225678888888888776544333     24678888888888776211   111122467


Q ss_pred             CCcEEEccCCCCc
Q 005168          304 NLQFLMLSNNSLK  316 (710)
Q Consensus       304 ~L~~L~Ls~n~l~  316 (710)
                      .|+.|+|++|++.
T Consensus       299 dL~kLnLngN~l~  311 (382)
T KOG1909|consen  299 DLEKLNLNGNRLG  311 (382)
T ss_pred             hhHHhcCCccccc
Confidence            8888888888874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=7.1e-10  Score=83.05  Aligned_cols=59  Identities=39%  Similarity=0.620  Sum_probs=28.9

Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCc
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN  596 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~  596 (710)
                      +|++|++++|+++.+.+++|.++++|++|++++|+++...|+.|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444445555555555555544444444455555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=6.3e-10  Score=83.33  Aligned_cols=61  Identities=48%  Similarity=0.610  Sum_probs=58.2

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                      |+|+.|++++|+++...+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4799999999999988889999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=3.7e-10  Score=120.86  Aligned_cols=247  Identities=29%  Similarity=0.302  Sum_probs=137.5

Q ss_pred             CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168          253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG  332 (710)
Q Consensus       253 ~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~  332 (710)
                      +..++.+.++.|.+..+ -..+..+++|+.|++.+|.|. .+... ...+++|++|++++|.|..             -.
T Consensus        71 l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~-------------i~  134 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK-------------LE  134 (414)
T ss_pred             hHhHHhhccchhhhhhh-hcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc-------------cc
Confidence            34555555666655531 123455566666666666665 34332 1235666666666666553             12


Q ss_pred             cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcc
Q 005168          333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG  412 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~  412 (710)
                      .+..++.|+.|++++|.+...  ..+..+..|+.+++++|++..+...                                
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~--------------------------------  180 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND--------------------------------  180 (414)
T ss_pred             chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh--------------------------------
Confidence            234445566666666666632  2344466677777777766643321                                


Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                         . ...+.+++.+++.+|.+..+  ..+..+..+..+++..|.++..-+...                          
T Consensus       181 ---~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~--------------------------  228 (414)
T KOG0531|consen  181 ---E-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE--------------------------  228 (414)
T ss_pred             ---h-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc--------------------------
Confidence               0 12345556666666655422  223333344444566665543221100                          


Q ss_pred             CCCcceeeccccceecccccc--cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168          493 GPQGDFTTKNIAYIYQGKVLS--LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY  570 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  570 (710)
                                         +.  .|+.+++++|.+.. .+..+..+..+..|++++|++..+  ..+...+.+..+....
T Consensus       229 -------------------~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  229 -------------------LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND  286 (414)
T ss_pred             -------------------chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence                               11  26677777777663 224566677888888888888766  4456667777777777


Q ss_pred             CcCcc---cCCcc-cccCCCCCEEeccCCccccccCC
Q 005168          571 NKLNG---KIPHQ-LVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       571 N~i~~---~~~~~-l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      |.+..   ..... ....+.+..+.+.+|+.....+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCcccccccc
Confidence            77662   22221 44567788888888887765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=3.5e-08  Score=112.89  Aligned_cols=57  Identities=28%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCC-CchhhcCCccCCEEeC
Q 005168          512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDL  568 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  568 (710)
                      +++|+.|.+..+.....+......+..+.++.+..+.+.+. .-...++++++..+.+
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence            56788888887776655555556666666666666666655 2333444444444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.60  E-value=3.6e-08  Score=112.78  Aligned_cols=127  Identities=28%  Similarity=0.397  Sum_probs=62.4

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc--CcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA--LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~--i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      ..+...+-+|.+. .++....  .++|++|-+.+|.  +..+....|..++.|++|||++|.--+.+|..+. ++-+|++
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~Lry  599 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRY  599 (889)
T ss_pred             heeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhc
Confidence            3444455445444 3333332  2345555555553  3333333455555555555555533335555554 3555555


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN  372 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  372 (710)
                      |++++..+.            .+|..++++..|.+|++..+......+.....+.+|++|.+...
T Consensus       600 L~L~~t~I~------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGIS------------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCcc------------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            555555544            24555555555555555555443334444455555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=7.2e-09  Score=110.94  Aligned_cols=218  Identities=27%  Similarity=0.249  Sum_probs=125.5

Q ss_pred             CCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCC
Q 005168          301 GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS  380 (710)
Q Consensus       301 ~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~  380 (710)
                      .+..++.+.+..|.+.+            +...+..+.+|+.|++.+|.+..+.. .+..+++|++|++++|.|+.+.+-
T Consensus        70 ~l~~l~~l~l~~n~i~~------------~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l  136 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK------------ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGL  136 (414)
T ss_pred             HhHhHHhhccchhhhhh------------hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccch
Confidence            46677777777777653            23346777888888898888885433 266788888888888888865432


Q ss_pred             CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCccc
Q 005168          381 CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  459 (710)
                      .. +..|+.|++++|.+...               ..+..+..|+.+++++|+++.+.+ . ...+.+++.+++.+|.+.
T Consensus       137 ~~-l~~L~~L~l~~N~i~~~---------------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  137 ST-LTLLKELNLSGNLISDI---------------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hh-ccchhhheeccCcchhc---------------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            22 33466666666665521               112335666667777776664433 1 355666666666666654


Q ss_pred             ccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC--
Q 005168          460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT--  537 (710)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--  537 (710)
                      .......                                             ...+..+++..|.++...+  +..+.  
T Consensus       200 ~i~~~~~---------------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~  232 (414)
T KOG0531|consen  200 EIEGLDL---------------------------------------------LKKLVLLSLLDNKISKLEG--LNELVML  232 (414)
T ss_pred             cccchHH---------------------------------------------HHHHHHhhcccccceeccC--cccchhH
Confidence            2211110                                             1133344666666653322  11222  


Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      .|+++++++|.+.... ..+..+..++.|++.+|++...-  .+...+.+..+....|++.
T Consensus       233 ~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  233 HLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            2677777777766432 44555666777777777666322  2334445555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=1.7e-09  Score=114.16  Aligned_cols=42  Identities=36%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168          416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  459 (710)
                      .++.-++.++.|+|++|+++..  +.+..++.|++|||++|.+.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence            3344444555555555555422  13444555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3e-08  Score=94.23  Aligned_cols=154  Identities=18%  Similarity=0.067  Sum_probs=93.3

Q ss_pred             hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccc-cccccCcccccCCCCCcEEEccCCcccccccccccCCC
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNH-FRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA  152 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~-l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (710)
                      .+.+|.+|+.|.+.++++..-        .+|+.++++.|. ++...-.-.+.+|++|..|+++++........++..-.
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            444555555555555554432        555566665553 22111112357888888888888877655433321111


Q ss_pred             CCCcccEEEecCCCCCCC---ccChhccCCCCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCCcccccCcc---Cc
Q 005168          153 PNFQLQSLSLSSSYGDGV---TFPKFLYHQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSLAGPFWL---PI  225 (710)
Q Consensus       153 ~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~  225 (710)
                       ..+|..|++ ++|...-   .+..-...+++|..||+|+|. ++......+ -.++.|++|.+++|..  +.|.   .+
T Consensus       285 -se~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~--i~p~~~~~l  359 (419)
T KOG2120|consen  285 -SETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYD--IIPETLLEL  359 (419)
T ss_pred             -chhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcC--CChHHeeee
Confidence             127888888 5554221   122233478999999999985 443333333 4789999999999863  3343   46


Q ss_pred             cCCCCCCEEEcccCc
Q 005168          226 HSHKRLGILDISNNN  240 (710)
Q Consensus       226 ~~~~~L~~L~ls~n~  240 (710)
                      ...+.|.+|++.++-
T Consensus       360 ~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCcceEEEEecccc
Confidence            778999999987653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.4e-08  Score=93.13  Aligned_cols=175  Identities=19%  Similarity=0.163  Sum_probs=116.8

Q ss_pred             CCCCEEEccCCcCCCC---------CCCcEEEccccccccccCcccccCCCCCcEEEccCCc-ccccccccccCCCCCCc
Q 005168           87 NNLEVLDMSYNKIDNL---------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ-MNAEITESHSLTAPNFQ  156 (710)
Q Consensus        87 ~~L~~L~Ls~n~l~~~---------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~  156 (710)
                      ..||++|||+..++..         ..|+.|.+.++.+...+. ..++.-..|+.++++++. ++......  .+..++.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHH--HHHhhhh
Confidence            3599999999877543         789999999998875433 346677889999999864 33222211  1234568


Q ss_pred             ccEEEecCCCCCCCccChhccC-CCCCCEEEccCCcCc--ccCChhHhhcCCCCcEEEccCCc-ccccCccCccCCCCCC
Q 005168          157 LQSLSLSSSYGDGVTFPKFLYH-QHDLEYVRLSHIKMN--GEFPNWLLENNTKLATLFLVNDS-LAGPFWLPIHSHKRLG  232 (710)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~ls~~~~~--~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~  232 (710)
                      |.+|++++....+..+...+.+ -++|+.|++++++-.  ...-..+...+|+|.+|++++|- +.......|..++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            9999994443333333333333 368999999988532  22223345789999999999875 4444445677889999


Q ss_pred             EEEcccCcCcccCChhh--hhcCCCccEEEccCCcC
Q 005168          233 ILDISNNNIRGHIPVEI--GDVLPSLYVFNISMNAL  266 (710)
Q Consensus       233 ~L~ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i  266 (710)
                      +|.++.|..  .+|..+  +...|.|.+|++.++--
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            999998863  445443  23378899999887643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.8e-07  Score=87.79  Aligned_cols=79  Identities=20%  Similarity=0.298  Sum_probs=40.7

Q ss_pred             CCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccc
Q 005168           45 LRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFR  116 (710)
Q Consensus        45 l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~  116 (710)
                      ..+++.+||..|.|+..+              +|.. .++++|.|++|+++-|++.+-        .+|+.|-|.+..+.
T Consensus        70 ~~~v~elDL~~N~iSdWs--------------eI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWS--------------EIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhhcccchhccHH--------------HHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            456666666666665111              3333 455666666666666655432        33444444444332


Q ss_pred             cccCcccccCCCCCcEEEccCC
Q 005168          117 IPISLEPLFNHSRLKIFHAKNN  138 (710)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~L~~n  138 (710)
                      -.-....+..+|.+++|+++.|
T Consensus       135 w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  135 WTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhhcchhhhhhhhccc
Confidence            1112223456666677777666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=3e-08  Score=105.04  Aligned_cols=93  Identities=29%  Similarity=0.399  Sum_probs=62.5

Q ss_pred             ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcc-------cccEEecCCCcce
Q 005168            3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFV-------VSKELYLDDTGFK   75 (710)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~-------~l~~L~L~~~~~~   75 (710)
                      +.|+|.++ ....++.-++.|+.|||++|+++ .+  +.+..+++|++|||++|.+...+       +|+.|.+++|.++
T Consensus       170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT  245 (1096)
T ss_pred             hcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHH
Confidence            56777777 66677788888888888888877 44  37778888888888888776333       2455666666654


Q ss_pred             eecCHHhhcCCCCCCEEEccCCcCCCC
Q 005168           76 GTLDIREFDSFNNLEVLDMSYNKIDNL  102 (710)
Q Consensus        76 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~  102 (710)
                       ++  ..++++.+|+.||+++|-+.+.
T Consensus       246 -tL--~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  246 -TL--RGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             -hh--hhHHhhhhhhccchhHhhhhcc
Confidence             22  1455666666666666655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=9.1e-07  Score=84.38  Aligned_cols=204  Identities=18%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             CCCEEEccCCcCCCC----------CCCcEEEccccccccccCc-ccccCCCCCcEEEccCCcccccccccccCCCCCCc
Q 005168           88 NLEVLDMSYNKIDNL----------VVPQELRLSDNHFRIPISL-EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ  156 (710)
Q Consensus        88 ~L~~L~Ls~n~l~~~----------~~L~~L~L~~~~l~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~  156 (710)
                      .+..+.+.++.|...          +.++++||.+|.++.-..+ ..+.++|.|+.|+++.|++...+...   ..+..+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l---p~p~~n  122 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL---PLPLKN  122 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC---cccccc
Confidence            344555555555433          5666777777766531111 12456677777777776665443321   134446


Q ss_pred             ccEEEecCCCCCC-CccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEE
Q 005168          157 LQSLSLSSSYGDG-VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD  235 (710)
Q Consensus       157 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  235 (710)
                      |+.|.+ .+..+. ....+.+..+|.+++|++|.|...               .+.+..+.+..       ..+.++.|+
T Consensus       123 l~~lVL-NgT~L~w~~~~s~l~~lP~vtelHmS~N~~r---------------q~n~Dd~c~e~-------~s~~v~tlh  179 (418)
T KOG2982|consen  123 LRVLVL-NGTGLSWTQSTSSLDDLPKVTELHMSDNSLR---------------QLNLDDNCIED-------WSTEVLTLH  179 (418)
T ss_pred             eEEEEE-cCCCCChhhhhhhhhcchhhhhhhhccchhh---------------hhccccccccc-------cchhhhhhh
Confidence            666666 333221 112223334455555555544221               11111111111       112334444


Q ss_pred             cccCcCcccCC-hhhhhcCCCccEEEccCCcCcccC-CccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCC
Q 005168          236 ISNNNIRGHIP-VEIGDVLPSLYVFNISMNALDGSI-PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN  313 (710)
Q Consensus       236 ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n  313 (710)
                      +..|....... ..+...+|++..+.+..|.+.+.. ...+..++.+--|+|+.|+|.+.-.-....+++.|..|.++++
T Consensus       180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN  259 (418)
T ss_pred             cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence            44443221000 012233567777777777665432 2345556666677777777653333344556677777777766


Q ss_pred             CCcC
Q 005168          314 SLKE  317 (710)
Q Consensus       314 ~l~~  317 (710)
                      ++.+
T Consensus       260 Pl~d  263 (418)
T KOG2982|consen  260 PLSD  263 (418)
T ss_pred             cccc
Confidence            6654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=4.1e-07  Score=85.53  Aligned_cols=94  Identities=16%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             CCCCCCEEeccCCccCCcCChhh----hcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccc
Q 005168          276 NMKFLQLLDLSNNQLTGEIPEHL----AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE  351 (710)
Q Consensus       276 ~l~~L~~L~Ls~n~l~~~i~~~~----~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  351 (710)
                      .-|.|++.+..+|++. ..|...    ++.=.+|+.+.+..|.|...      .++...-..+..+.+|+.|++++|.++
T Consensus       155 ~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpe------gv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         155 DKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPE------GVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcc------hhHHHHHHHHHHhCcceeeeccccchh
Confidence            3467888888888886 444322    22224777777777766520      011111122445788888888888776


Q ss_pred             cc----cchhhcCCCCCCEEECCCCcCcc
Q 005168          352 GP----IPVEFCQLYSLQILDISDNNISG  376 (710)
Q Consensus       352 ~~----~~~~~~~l~~L~~L~ls~n~i~~  376 (710)
                      ..    ...+++.++.|+.|.+.+|-++.
T Consensus       228 ~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         228 LEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             hhhHHHHHHHhcccchhhhccccchhhcc
Confidence            43    45667788888999998887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=1.6e-07  Score=79.00  Aligned_cols=135  Identities=21%  Similarity=0.297  Sum_probs=84.6

Q ss_pred             CccEEecCCCcccccCCcc---cCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168          423 QLSHLILGHNNLEGEVPVQ---LCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT  499 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (710)
                      .+..++|++|++. .++++   +.....|...+|++|.+. ..|..|..                               
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-------------------------------   74 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-------------------------------   74 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-------------------------------
Confidence            3556677777664 23333   344556677788888776 33333321                               


Q ss_pred             eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCc
Q 005168          500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH  579 (710)
Q Consensus       500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~  579 (710)
                                 -++..+.+++++|++. .+|..+..++.|+.|+++.|.+... |..+..+.++-.|+..+|.+.. +|-
T Consensus        75 -----------kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e-id~  140 (177)
T KOG4579|consen   75 -----------KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARAE-IDV  140 (177)
T ss_pred             -----------ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCcccc-CcH
Confidence                       1346778888888887 4566688888888888888888744 5555568888888888887773 333


Q ss_pred             ccccCCCCCEEeccCCccccccCCC
Q 005168          580 QLVELKTLEVFSVAYNNLSGEILEW  604 (710)
Q Consensus       580 ~l~~l~~L~~L~l~~N~l~~~~~~~  604 (710)
                      .+..-+..-..++.++||.+.++..
T Consensus       141 dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  141 DLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             HHhccccHHHHHhcCCcccccCccc
Confidence            2322233334455667777766643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.04  E-value=6.7e-06  Score=74.38  Aligned_cols=128  Identities=26%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEcc
Q 005168          232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS  311 (710)
Q Consensus       232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  311 (710)
                      +++++.+.++. .+. ..+....+...+||++|.+...  +.|..++.|.+|.+++|+|+ .|...+..-+++|..|.+.
T Consensus        22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-chh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            45566655554 222 2444456778888888888743  46778888999999999998 7877777678889999998


Q ss_pred             CCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc---chhhcCCCCCCEEECCCCcC
Q 005168          312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI---PVEFCQLYSLQILDISDNNI  374 (710)
Q Consensus       312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ls~n~i  374 (710)
                      +|.+.+.-|          -..+..+|.|++|.+-+|.+....   .-.+..+++|++||+.+-..
T Consensus        97 nNsi~~l~d----------l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   97 NNSIQELGD----------LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             Ccchhhhhh----------cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            888875211          223667888888888888776431   12356778888888876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=6.5e-07  Score=75.44  Aligned_cols=83  Identities=23%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM  309 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  309 (710)
                      .|+..+|++|.+. .+|..+...++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..++. +.++-.|+
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhc
Confidence            4444555555555 555555544555555555555555 33444555555555555555555 44544443 55555555


Q ss_pred             ccCCCCc
Q 005168          310 LSNNSLK  316 (710)
Q Consensus       310 Ls~n~l~  316 (710)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=8.9e-06  Score=55.53  Aligned_cols=41  Identities=27%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             CCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCccc
Q 005168           21 SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV   63 (710)
Q Consensus        21 ~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~   63 (710)
                      ++|++|++++|+|+ .++ ..|++|++|+.|++++|++++++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCCCCcC
Confidence            57999999999999 687 569999999999999999885443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.92  E-value=5.6e-07  Score=89.91  Aligned_cols=77  Identities=18%  Similarity=0.220  Sum_probs=41.8

Q ss_pred             CCCCEEECCCCccccccChhhh-cCCCCCCEEeCCCCCC-C---------CcccccEEecCCCc-ceeecCHHhhcCCCC
Q 005168           21 SSLRSLNLNGNSLEGSIDVKEF-DSLRDLEELDIGENKI-D---------KFVVSKELYLDDTG-FKGTLDIREFDSFNN   88 (710)
Q Consensus        21 ~~L~~L~Ls~n~i~~~i~~~~f-~~l~~L~~L~Ls~n~l-~---------~l~~l~~L~L~~~~-~~~~i~~~~~~~l~~   88 (710)
                      ..|+.|.++++.-.+.-+...| .+.+++++|++.++.- +         .|+++++|+|..|. ++...-...-..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4677777777653222112233 4677777777777642 2         55666666666643 222222212335666


Q ss_pred             CCEEEccCC
Q 005168           89 LEVLDMSYN   97 (710)
Q Consensus        89 L~~L~Ls~n   97 (710)
                      |+++++|++
T Consensus       218 L~~lNlSwc  226 (483)
T KOG4341|consen  218 LKYLNLSWC  226 (483)
T ss_pred             HHHhhhccC
Confidence            666666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.86  E-value=5.7e-06  Score=78.06  Aligned_cols=161  Identities=19%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             hhcCCCCCCEEEccCCcCCCC------------CCCcEEEccccccccccC------------cccccCCCCCcEEEccC
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL------------VVPQELRLSDNHFRIPIS------------LEPLFNHSRLKIFHAKN  137 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~------------~~L~~L~L~~~~l~~~~~------------~~~l~~l~~L~~L~L~~  137 (710)
                      ++.+||+|+.++||.|.|..-            +.|.+|.+++|-+.....            .....+-|.|+......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            456667777777777765433            566777777765431111            11234567888888887


Q ss_pred             Cccccccccc-ccCCCCCCcccEEEecCCCCCCCccCh-----hccCCCCCCEEEccCCcCcccCChhH---hhcCCCCc
Q 005168          138 NQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPK-----FLYHQHDLEYVRLSHIKMNGEFPNWL---LENNTKLA  208 (710)
Q Consensus       138 n~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~  208 (710)
                      |.+..-.... ...+..+..|+++.+ ..+++...-..     .++.+++|+.||+.+|.++......+   ....+.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki-~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKI-QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEe-eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            7653222111 111223358899999 66665433211     24578999999999998875443322   24557799


Q ss_pred             EEEccCCcccccCccC----c--cCCCCCCEEEcccCcCcc
Q 005168          209 TLFLVNDSLAGPFWLP----I--HSHKRLGILDISNNNIRG  243 (710)
Q Consensus       209 ~L~l~~~~~~~~~~~~----~--~~~~~L~~L~ls~n~i~~  243 (710)
                      +|.+.+|-+...-..+    |  ...++|..|...+|.+.+
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            9999999876533222    2  235778888888887664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.82  E-value=4e-05  Score=67.39  Aligned_cols=102  Identities=21%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             hcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCC
Q 005168          202 ENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ  281 (710)
Q Consensus       202 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~  281 (710)
                      .++++|+.+.+.+ .+..+....|..+++++.+.+.++ +. .++...+..+++++.+.+.+ .+..+....|..+++|+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccc
Confidence            3444444444432 233333344444444555544442 33 34444444344444444433 23223334444444455


Q ss_pred             EEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168          282 LLDLSNNQLTGEIPEHLAVGCVNLQFLML  310 (710)
Q Consensus       282 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  310 (710)
                      .+++..+ +. .++...|.++ +|+.+.+
T Consensus        85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   85 NIDIPSN-IT-EIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             EEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred             ccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence            4444433 33 3444444443 4444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=1.9e-05  Score=53.92  Aligned_cols=36  Identities=42%  Similarity=0.675  Sum_probs=17.7

Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~  574 (710)
                      +|++|++++|+|+.+.+ .++++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence            45555555555554422 3555555555555555555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=4.8e-05  Score=68.99  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=41.2

Q ss_pred             hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA  142 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~  142 (710)
                      .|.+++.|.+|.|++|+|+.+        ++|..|.|.+|.+.......++..|++|++|.+-+|++..
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            355556666666666666554        5566666666666655566678888999999998887753

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.72  E-value=6.7e-05  Score=65.96  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=35.8

Q ss_pred             CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168          224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV  303 (710)
Q Consensus       224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  303 (710)
                      .|..+++|+.+.+.. .+. .++...|..+++++.+.+.++ +..+...+|.++++++.+.+.. .+. .++...|..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            455555566666553 344 455555544555555555553 4444445555555555555543 333 44555555555


Q ss_pred             CCcEEEcc
Q 005168          304 NLQFLMLS  311 (710)
Q Consensus       304 ~L~~L~Ls  311 (710)
                      +|+.+++.
T Consensus        82 ~l~~i~~~   89 (129)
T PF13306_consen   82 NLKNIDIP   89 (129)
T ss_dssp             TECEEEET
T ss_pred             cccccccC
Confidence            55555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00034  Score=72.24  Aligned_cols=13  Identities=23%  Similarity=0.271  Sum_probs=6.8

Q ss_pred             CCCEEECCCCcCc
Q 005168          363 SLQILDISDNNIS  375 (710)
Q Consensus       363 ~L~~L~ls~n~i~  375 (710)
                      +|++|++++|...
T Consensus       157 SLk~L~Is~c~~i  169 (426)
T PRK15386        157 SLKTLSLTGCSNI  169 (426)
T ss_pred             cccEEEecCCCcc
Confidence            4555555555433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.52  E-value=5.7e-06  Score=82.85  Aligned_cols=137  Identities=18%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             cCCCCcEEEccCCcccccCc--cCccCCCCCCEEEcccCc-CcccCChhhhhcCCCccEEEccCCcCcc--cCCccCcCC
Q 005168          203 NNTKLATLFLVNDSLAGPFW--LPIHSHKRLGILDISNNN-IRGHIPVEIGDVLPSLYVFNISMNALDG--SIPSSFGNM  277 (710)
Q Consensus       203 ~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~f~~l  277 (710)
                      .+..|+.|..+++.-.+..+  .--.+..+|+.|.++.++ ++..--..+....+.|+.+++..+....  .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            34555555555543321111  112344555666555553 2211111223334566666666654321  112222356


Q ss_pred             CCCCEEeccCCccCCcCC----hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCc
Q 005168          278 KFLQLLDLSNNQLTGEIP----EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH  349 (710)
Q Consensus       278 ~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  349 (710)
                      +.|++|.++++.....-.    .....++..|+.+.+++++...          ......+..+++|+.+++-++.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~----------d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT----------DATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch----------HHHHHHHhhCcccceeeeechh
Confidence            667777777664321110    1111245566667766666542          1222345566677777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=3.2e-05  Score=86.67  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             ccccEEecCCCcceeecCHHhhc-CCCCCCEEEccCCcCC---------CCCCCcEEEccccccccccCcccccCCCCCc
Q 005168           62 VVSKELYLDDTGFKGTLDIREFD-SFNNLEVLDMSYNKID---------NLVVPQELRLSDNHFRIPISLEPLFNHSRLK  131 (710)
Q Consensus        62 ~~l~~L~L~~~~~~~~i~~~~~~-~l~~L~~L~Ls~n~l~---------~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~  131 (710)
                      .+|++|++++...-..-.+..++ .+|+|++|.+++-.+.         ++++|..||+|++.++..   ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            34455555443332222222333 3566666666664432         236666666666666522   3466777777


Q ss_pred             EEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCc-----cChhccCCCCCCEEEccCCcCcccCChhHhhcCCC
Q 005168          132 IFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVT-----FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK  206 (710)
Q Consensus       132 ~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~  206 (710)
                      .|.+.+-.+..  ...+..++...+|+.||+|..-.....     ..++-..+|+|+.||.|+..+...+-+.+...-++
T Consensus       199 ~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  199 VLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            77776654432  112223344455666665322211111     11122245666666666666665544444334444


Q ss_pred             CcEEE
Q 005168          207 LATLF  211 (710)
Q Consensus       207 L~~L~  211 (710)
                      |+.+.
T Consensus       277 L~~i~  281 (699)
T KOG3665|consen  277 LQQIA  281 (699)
T ss_pred             Hhhhh
Confidence            44443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=5.1e-05  Score=85.08  Aligned_cols=133  Identities=21%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             CCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCCccccc-CccCccCCCCCCEEEcccCcCcccCChhhhhcCCCcc
Q 005168          180 HDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSLAGP-FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLY  257 (710)
Q Consensus       180 ~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~  257 (710)
                      .+|+.|++++.. +....|..+..-+|.|++|.+.+-.+... +.....++++|..||+|+.+++ .+ ..+.. +++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence            345555555432 22233333434456666666555444321 1223445566666666666655 33 22222 55666


Q ss_pred             EEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCcCChh------hhcCCCCCcEEEccCCCCc
Q 005168          258 VFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGEIPEH------LAVGCVNLQFLMLSNNSLK  316 (710)
Q Consensus       258 ~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~------~~~~l~~L~~L~Ls~n~l~  316 (710)
                      .|.+++-.+.. ..-..+-++++|++||+|..... ..+..      ....+|+|+.||.|+..+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            66665544432 11112345666666666665443 22211      1224677777777766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.31  E-value=0.00095  Score=69.03  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=17.6

Q ss_pred             CccEEecCCCcccccCCcccCCCCCCCEEEccCC
Q 005168          423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN  456 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  456 (710)
                      +|+.|.++++.--...|+.+  .++|+.|++++|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            56777776643222344433  246777777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0013  Score=62.70  Aligned_cols=76  Identities=26%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CcccccEEecCCC--cceeecCHHhhcCCCCCCEEEccCCcCCCC---------CCCcEEEccccccccccC--cccccC
Q 005168           60 KFVVSKELYLDDT--GFKGTLDIREFDSFNNLEVLDMSYNKIDNL---------VVPQELRLSDNHFRIPIS--LEPLFN  126 (710)
Q Consensus        60 ~l~~l~~L~L~~~--~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~---------~~L~~L~L~~~~l~~~~~--~~~l~~  126 (710)
                      .+++|+.|.+|.|  .+.+.++. ...++|+|+++++++|+++.+         .+|..|++..|..++.-.  ...+.-
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            3444555555555  44444544 445557777777777766533         556667777665543111  112444


Q ss_pred             CCCCcEEEcc
Q 005168          127 HSRLKIFHAK  136 (710)
Q Consensus       127 l~~L~~L~L~  136 (710)
                      +++|++|+-.
T Consensus       142 l~~L~~LD~~  151 (260)
T KOG2739|consen  142 LPSLKYLDGC  151 (260)
T ss_pred             hhhhcccccc
Confidence            5666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.0002  Score=68.18  Aligned_cols=78  Identities=21%  Similarity=0.266  Sum_probs=38.6

Q ss_pred             CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCCh-hhhcCCCCCcEEE
Q 005168          231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE-HLAVGCVNLQFLM  309 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~  309 (710)
                      .+.|+..+++++   +..+...|+.|+.|.|+-|+|++..  .|..|++|+.|+|..|.|. .+.. .-..++|+|+.|.
T Consensus        21 vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   21 VKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             hhhhcccCCCcc---HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            344455555444   2233444556666666666665443  2455566666666666555 3322 2233455555555


Q ss_pred             ccCCC
Q 005168          310 LSNNS  314 (710)
Q Consensus       310 Ls~n~  314 (710)
                      |..|+
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            44444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.36  E-value=0.0015  Score=62.28  Aligned_cols=60  Identities=27%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             hhcCCCCCCEEEccCCcCC--C-C-------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccc
Q 005168           82 EFDSFNNLEVLDMSYNKID--N-L-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN  141 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~--~-~-------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~  141 (710)
                      .|-.+++|++|.+|.|.+.  + +       ++|+++++++|+++..-...++..+.+|..|++.+|..+
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            3556677777787777322  1 1       777788888877775444555667777777777776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.0007  Score=64.57  Aligned_cols=84  Identities=19%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-cccccCCCCCEE
Q 005168          512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVF  590 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~l~~L~~L  590 (710)
                      +.+.+.|++.++.+.++  .....++.|+.|.||=|+|+.+  ..|..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777777777643  2345677777777777777776  446677777777777777764322 235667777777


Q ss_pred             eccCCcccc
Q 005168          591 SVAYNNLSG  599 (710)
Q Consensus       591 ~l~~N~l~~  599 (710)
                      -|..||=.+
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            777777543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.26  E-value=0.0044  Score=68.26  Aligned_cols=143  Identities=17%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             cCCCCCcEEEccCCc-ccccccccccCCCCCCcccEEEecCCCC-CCCccChhc-cCCCCCCEEEccCCcCc-ccCChhH
Q 005168          125 FNHSRLKIFHAKNNQ-MNAEITESHSLTAPNFQLQSLSLSSSYG-DGVTFPKFL-YHQHDLEYVRLSHIKMN-GEFPNWL  200 (710)
Q Consensus       125 ~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l-~~~~~L~~L~ls~~~~~-~~~~~~~  200 (710)
                      ..+.+|+.++++++. ++......+..  .+++|+.|.+ ..|. .++..-..+ ..++.|++|+++.|... +..-...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l-~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSL-SNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHh--hCCCcceEcc-CCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence            344566666666655 33222222111  1335555554 4443 222222222 24555666666655432 2111111


Q ss_pred             hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcc--cCChhhhhcCCCccEEEccCCcCcccC-CccCcCC
Q 005168          201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG--HIPVEIGDVLPSLYVFNISMNALDGSI-PSSFGNM  277 (710)
Q Consensus       201 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~f~~l  277 (710)
                      ..++++++.|.+.....          ++.++.+.+.+..-..  .........+++++.+.+..+.+.... ...+.++
T Consensus       317 ~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc  386 (482)
T KOG1947|consen  317 LKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGC  386 (482)
T ss_pred             HHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCC
Confidence            23455555544332211          3334444433322210  222333344666666666666533222 1333444


Q ss_pred             CCC
Q 005168          278 KFL  280 (710)
Q Consensus       278 ~~L  280 (710)
                      +.|
T Consensus       387 ~~l  389 (482)
T KOG1947|consen  387 PNL  389 (482)
T ss_pred             ccc
Confidence            444

>TIGR00864 PCC polycystin cation channel protein

Probab=94.59  E-value=0.025  Score=70.78  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=49.3

Q ss_pred             eCcCCcCcccCCcccccCCCCCEEeccCCccccccCC-CccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168          567 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER  645 (710)
Q Consensus       567 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~  645 (710)
                      ||++|+|+.+.+..|..+++|+.|+|++|||.|+|.- |+..|..-...... .+     ....|..|..+++..+....
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~-~~-----~~i~CasP~~LrG~~L~~l~   74 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR-QP-----EAALCAGPGALAGQPLLGIP   74 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc-CC-----cccCCCCChHHCCCCcccCC
Confidence            6889999988888889999999999999999999953 33333221111110 00     01157888777777666554


Q ss_pred             CC
Q 005168          646 DD  647 (710)
Q Consensus       646 ~~  647 (710)
                      .+
T Consensus        75 ~~   76 (2740)
T TIGR00864        75 LL   76 (2740)
T ss_pred             cc
Confidence            43

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.16  E-value=0.0089  Score=65.83  Aligned_cols=186  Identities=18%  Similarity=0.054  Sum_probs=87.7

Q ss_pred             CCCCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-cccccC----ccCccCCCCCCEEEcccCc-CcccCChhhh
Q 005168          178 HQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVND-SLAGPF----WLPIHSHKRLGILDISNNN-IRGHIPVEIG  250 (710)
Q Consensus       178 ~~~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~  250 (710)
                      ..+.|+.+.+..+. ++...-..+...+++|++|+++++ ......    ......+++|+.|+++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35667777776663 322111223356677777777652 211111    1123445677777777766 4422223333


Q ss_pred             hcCCCccEEEccCCc-CcccC-CccCcCCCCCCEEeccCCccC-Cc-CChhhhcCCCCCcEEEccCCC---CcCeeeccC
Q 005168          251 DVLPSLYVFNISMNA-LDGSI-PSSFGNMKFLQLLDLSNNQLT-GE-IPEHLAVGCVNLQFLMLSNNS---LKEGLYLTN  323 (710)
Q Consensus       251 ~~~~~L~~L~L~~n~-i~~~~-~~~f~~l~~L~~L~Ls~n~l~-~~-i~~~~~~~l~~L~~L~Ls~n~---l~~~l~l~~  323 (710)
                      ..+++|+.|.+.++. +++.. .....+++.|+.|+++.+... +. +... ..++++|+.|.+....   ..+.+.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~  344 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSG  344 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence            446677777766665 44321 122345667777777766542 11 2222 3345655554433322   111111111


Q ss_pred             ccCc---cCcCccccCCCccceeeCccCcccccc-chhhcCCCCC
Q 005168          324 NSLS---GNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSL  364 (710)
Q Consensus       324 n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  364 (710)
                      ....   .........+++++.+.+..+...... ...+.+++.|
T Consensus       345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  345 LLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            1110   112223456666666666666533222 2334445544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.09  E-value=0.018  Score=32.48  Aligned_cols=12  Identities=58%  Similarity=0.681  Sum_probs=5.1

Q ss_pred             CCEEeCcCCcCc
Q 005168          563 IESLDLSYNKLN  574 (710)
Q Consensus       563 L~~L~Ls~N~i~  574 (710)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.68  E-value=0.028  Score=31.74  Aligned_cols=21  Identities=52%  Similarity=0.661  Sum_probs=12.1

Q ss_pred             CCCEEeCCCccCCCCCchhhcC
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSN  559 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~  559 (710)
                      +|++|||++|+++.++++ |++
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            366677777777644333 543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.98  E-value=0.086  Score=31.12  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=12.2

Q ss_pred             CCCCEEeCCCccCCCCCchhhc
Q 005168          537 TRIQTLNLSYNNLTGLIPSTFS  558 (710)
Q Consensus       537 ~~L~~L~Ls~n~l~~~~~~~~~  558 (710)
                      ++|+.|+|++|.|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4555666666666555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.98  E-value=0.086  Score=31.12  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=12.2

Q ss_pred             CCCCEEeCCCccCCCCCchhhc
Q 005168          537 TRIQTLNLSYNNLTGLIPSTFS  558 (710)
Q Consensus       537 ~~L~~L~Ls~n~l~~~~~~~~~  558 (710)
                      ++|+.|+|++|.|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4555666666666555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.54  E-value=0.11  Score=30.59  Aligned_cols=23  Identities=43%  Similarity=0.525  Sum_probs=18.0

Q ss_pred             CCCCCEEeccCCccCCcCChhhhc
Q 005168          277 MKFLQLLDLSNNQLTGEIPEHLAV  300 (710)
Q Consensus       277 l~~L~~L~Ls~n~l~~~i~~~~~~  300 (710)
                      +++|++|+|++|+++ .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 78887774

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.54  E-value=0.11  Score=30.59  Aligned_cols=23  Identities=43%  Similarity=0.525  Sum_probs=18.0

Q ss_pred             CCCCCEEeccCCccCCcCChhhhc
Q 005168          277 MKFLQLLDLSNNQLTGEIPEHLAV  300 (710)
Q Consensus       277 l~~L~~L~Ls~n~l~~~i~~~~~~  300 (710)
                      +++|++|+|++|+++ .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 78887774

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.41  E-value=0.0018  Score=69.71  Aligned_cols=60  Identities=32%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             ccEEECcCCcCCCC----CCcccccc-CCCCEEeCCCccCCCCCc----hhhcCCccCCEEeCcCCcCc
Q 005168          515 LSGLYLSCNKLIGH----IPPQIGNL-TRIQTLNLSYNNLTGLIP----STFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       515 L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~i~  574 (710)
                      +..|++++|.+.+.    ....+..+ ..+++++++.|.|+.-..    ..+...+.++.|.+++|.+.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44466666666533    11223333 455666666666654422    33344456666666666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.02  E-value=0.14  Score=26.77  Aligned_cols=13  Identities=69%  Similarity=0.810  Sum_probs=4.5

Q ss_pred             CCCEEeccCCccC
Q 005168          279 FLQLLDLSNNQLT  291 (710)
Q Consensus       279 ~L~~L~Ls~n~l~  291 (710)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.88  E-value=0.004  Score=67.00  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             hhcCCCCCCEEEccCCcCCCC-------------CCCcEEEccccccccccCc---ccccCCCCCcEEEccCCccccccc
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL-------------VVPQELRLSDNHFRIPISL---EPLFNHSRLKIFHAKNNQMNAEIT  145 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~-------------~~L~~L~L~~~~l~~~~~~---~~l~~l~~L~~L~L~~n~~~~~~~  145 (710)
                      ++...+.|+.|++++|.+...             ..+++|++..|.++.....   ..+.....++.++++.|.+.....
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            566677788888888876643             3456667777766632211   123446677777777776642111


Q ss_pred             ccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChh---HhhcCCC-CcEEEccCCccccc-
Q 005168          146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW---LLENNTK-LATLFLVNDSLAGP-  220 (710)
Q Consensus       146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---~~~~l~~-L~~L~l~~~~~~~~-  220 (710)
                      .....                    ..+..+....++++|++++|.++......   .....+. +..+++..|++.+. 
T Consensus       190 ~~l~~--------------------~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g  249 (478)
T KOG4308|consen  190 LVLSQ--------------------ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVG  249 (478)
T ss_pred             HHHhh--------------------hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHH
Confidence            11000                    00111223456666666666655322111   1123333 55566766666532 


Q ss_pred             ---CccCccCC-CCCCEEEcccCcCcccCChhhhh---cCCCccEEEccCCcCcc
Q 005168          221 ---FWLPIHSH-KRLGILDISNNNIRGHIPVEIGD---VLPSLYVFNISMNALDG  268 (710)
Q Consensus       221 ---~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~---~~~~L~~L~L~~n~i~~  268 (710)
                         ....+..+ ..+++++++.|.|+..-......   ..++++++.+.+|.+..
T Consensus       250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence               12234444 56788888888877443332222   14578888888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.79  E-value=0.018  Score=53.83  Aligned_cols=92  Identities=15%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             cCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCc-------ccccEEecCCCccee
Q 005168            4 LSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF-------VVSKELYLDDTGFKG   76 (710)
Q Consensus         4 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l-------~~l~~L~L~~~~~~~   76 (710)
                      +|--.++.+.-.....+...+.||++.|++. ... ..|+-+..|+.||++.|++..+       ..++++++..|..+ 
T Consensus        25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-  101 (326)
T KOG0473|consen   25 LSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-  101 (326)
T ss_pred             CCHHHhcccchhhhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-
Confidence            3334455555556667777788888887765 344 5677777777788887776522       22344555555544 


Q ss_pred             ecCHHhhcCCCCCCEEEccCCcC
Q 005168           77 TLDIREFDSFNNLEVLDMSYNKI   99 (710)
Q Consensus        77 ~i~~~~~~~l~~L~~L~Ls~n~l   99 (710)
                      ..|. ++...++++++++-.|.|
T Consensus       102 ~~p~-s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  102 QQPK-SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hCCc-cccccCCcchhhhccCcc
Confidence            5555 667777777777666654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.61  E-value=0.91  Score=26.75  Aligned_cols=17  Identities=53%  Similarity=0.796  Sum_probs=9.8

Q ss_pred             CCCCEEeCCCCCCCCcc
Q 005168           46 RDLEELDIGENKIDKFV   62 (710)
Q Consensus        46 ~~L~~L~Ls~n~l~~l~   62 (710)
                      .+|+.|+|++|+|+++.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            45666666666665333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.05  E-value=0.052  Score=50.84  Aligned_cols=84  Identities=18%  Similarity=0.187  Sum_probs=72.0

Q ss_pred             cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEe
Q 005168          512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS  591 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~  591 (710)
                      ....+.||++.|++. -....|+-++.|..|+++.|.+.. .|..++.+..+..+++.+|..+ ..|..+...+++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            346788999999887 345668888999999999999984 5677888889999999999998 7888899999999999


Q ss_pred             ccCCccc
Q 005168          592 VAYNNLS  598 (710)
Q Consensus       592 l~~N~l~  598 (710)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999975

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.45  E-value=0.41  Score=44.20  Aligned_cols=76  Identities=21%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhc----CCCCCCEEeCCCCCCCCcccccEEecCCCcceee
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD----SLRDLEELDIGENKIDKFVVSKELYLDDTGFKGT   77 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~----~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~   77 (710)
                      +|-|+..|.++..+.|.+++.++.|.+.+++   +++...+.    -.++|+.|++++|.               +|+..
T Consensus       106 VDAsds~I~~eGle~L~~l~~i~~l~l~~ck---~~dD~~L~~l~~~~~~L~~L~lsgC~---------------rIT~~  167 (221)
T KOG3864|consen  106 VDASDSSIMYEGLEHLRDLRSIKSLSLANCK---YFDDWCLERLGGLAPSLQDLDLSGCP---------------RITDG  167 (221)
T ss_pred             EecCCchHHHHHHHHHhccchhhhheecccc---chhhHHHHHhcccccchheeeccCCC---------------eechh
Confidence            4556666666666677777777777776664   23323332    24566666666552               12212


Q ss_pred             cCHHhhcCCCCCCEEEccC
Q 005168           78 LDIREFDSFNNLEVLDMSY   96 (710)
Q Consensus        78 i~~~~~~~l~~L~~L~Ls~   96 (710)
                      --. .+.++++|+.|.+.+
T Consensus       168 GL~-~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  168 GLA-CLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHH-HHHHhhhhHHHHhcC
Confidence            222 566777777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	710
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-22
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 178/681 (26%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 39  VKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK------GTLD----IREFDSFNN 88
           V  F     L  LD+  N +   V +       +G K       TLD    +      N+
Sbjct: 90  VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 89  LEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESH 148
           LEVLD+S N I    V   + LSD                 LK      N+++ ++  S 
Sbjct: 150 LEVLDLSANSISGANVVGWV-LSDGC-------------GELKHLAISGNKISGDVDVSR 195
Query: 149 SLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA 208
            +               +  G+    FL     L+++ +S  K++G+F +  +   T+L 
Sbjct: 196 CVN----LEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELK 247
Query: 209 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG 268
            L + ++   GP  +P    K L  L ++ N   G IP  +     +L   ++S N   G
Sbjct: 248 LLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 269 SIPSSFG-------------------------NMKFLQLLDLSNNQLTGEIPEHLAVGCV 303
           ++P  FG                          M+ L++LDLS N+ +GE+PE L     
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 304 NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
           +L  L LS+N+                 + LYL NN  +G IP  L N + L+ + +  N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKR---- 403
           +L G IP     L  L+ L +  N + G +P    +  ++E + L  N L  ++      
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 404 -------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXX 456
                   LS N L G IP WIG L  L+ L L +N+  G +P                 
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 457 XXHGSIPPC-----------FDNTTLYESYNNSSSLDEKFEISFFIE--GPQGD----FT 499
             +G+IP             F     Y    N     E       +E  G + +     +
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 500 TKN----IAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 549
           T+N     + +Y G              L +S N L G+IP +IG++  +  LNL +N++
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 550 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA 609
           +G IP    +L+ +  LDLS NKL+G+IP  +  L  L    ++ NNLSG I E   QF 
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 724
Query: 610 TFNKSSYEGNTFLCGLPLPIC 630
           TF  + +  N  LCG PLP C
Sbjct: 725 TFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 187 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 244
           LS+  +NG    +  + +  L +L L  +SL+GP      + S   L  L++S+N +   
Sbjct: 81  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 245 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 298
             V  G  L SL V ++S N++ G+      +    G +K L +   S N+++G++    
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 299 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 346
              CVNL+FL +S+N+   G            L ++ N LSG+    +   T L  + + 
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 347 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 406
            N   GPIP     L SLQ L +++N  +G +P            L           DLS
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 299
Query: 407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 465
            N   G++P + G  S L  L L  NN  GE+P+                    G +P  
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 466 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 516
             N      TL  S NN       F         Q    T    Y+    + GK+   LS
Sbjct: 360 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 517 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
                  L+LS N L G IP  +G+L++++ L L  N L G IP     +K +E+L L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 629
           N L G+IP  L     L   S++ N L+GEI +W  +           N+F   +P  + 
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 630 -CRS 632
            CRS
Sbjct: 533 DCRS 536

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 178/681 (26%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 39  VKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK------GTLD----IREFDSFNN 88
           V  F     L  LD+  N +   V +       +G K       TLD    +      N+
Sbjct: 93  VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 89  LEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESH 148
           LEVLD+S N I    V   + LSD                 LK      N+++ ++  S 
Sbjct: 153 LEVLDLSANSISGANVVGWV-LSDGC-------------GELKHLAISGNKISGDVDVSR 198
Query: 149 SLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA 208
            +               +  G+    FL     L+++ +S  K++G+F +  +   T+L 
Sbjct: 199 CVN----LEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELK 250
Query: 209 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG 268
            L + ++   GP  +P    K L  L ++ N   G IP  +     +L   ++S N   G
Sbjct: 251 LLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 269 SIPSSFG-------------------------NMKFLQLLDLSNNQLTGEIPEHLAVGCV 303
           ++P  FG                          M+ L++LDLS N+ +GE+PE L     
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 304 NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
           +L  L LS+N+                 + LYL NN  +G IP  L N + L+ + +  N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKR---- 403
           +L G IP     L  L+ L +  N + G +P    +  ++E + L  N L  ++      
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 404 -------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXX 456
                   LS N L G IP WIG L  L+ L L +N+  G +P                 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 457 XXHGSIPPC-----------FDNTTLYESYNNSSSLDEKFEISFFIE--GPQGD----FT 499
             +G+IP             F     Y    N     E       +E  G + +     +
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 500 TKN----IAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 549
           T+N     + +Y G              L +S N L G+IP +IG++  +  LNL +N++
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 550 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA 609
           +G IP    +L+ +  LDLS NKL+G+IP  +  L  L    ++ NNLSG I E   QF 
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727
Query: 610 TFNKSSYEGNTFLCGLPLPIC 630
           TF  + +  N  LCG PLP C
Sbjct: 728 TFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 187 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 244
           LS+  +NG    +  + +  L +L L  +SL+GP      + S   L  L++S+N +   
Sbjct: 84  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 245 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 298
             V  G  L SL V ++S N++ G+      +    G +K L +   S N+++G++    
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 195
Query: 299 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 346
              CVNL+FL +S+N+   G            L ++ N LSG+    +   T L  + + 
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 347 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 406
            N   GPIP     L SLQ L +++N  +G +P            L           DLS
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 302
Query: 407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 465
            N   G++P + G  S L  L L  NN  GE+P+                    G +P  
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 466 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 516
             N      TL  S NN       F         Q    T    Y+    + GK+   LS
Sbjct: 363 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 517 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
                  L+LS N L G IP  +G+L++++ L L  N L G IP     +K +E+L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 629
           N L G+IP  L     L   S++ N L+GEI +W  +           N+F   +P  + 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 630 -CRS 632
            CRS
Sbjct: 536 DCRS 539

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 408 NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFD 467
           N L G IP  I +L+QL +L + H N+ G +P                    G++PP   
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
                      SSL     I+F      G+  +  I   Y G    L + + +S N+L G
Sbjct: 146 -----------SSLPNLVGITF-----DGNRISGAIPDSY-GSFSKLFTSMTISRNRLTG 188
Query: 528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN-----------------------LKHIE 564
            IPP   NL  +  ++LS N L G     F +                        K++ 
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 565 SLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 624
            LDL  N++ G +P  L +LK L   +V++NNL GEI +       F+ S+Y  N  LCG
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306
Query: 625 LPLPIC 630
            PLP C
Sbjct: 307 SPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 529 IPPQIGNLTRIQTLNLS-YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
           IP  + NL  +  L +   NNL G IP   + L  +  L +++  ++G IP  L ++KTL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 588 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626
                +YN LSG +    +        +++GN     +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	710
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-124
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  387 bits (997), Expect = e-124
 Identities = 168/646 (26%), Positives = 263/646 (40%), Gaps = 119/646 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK---- 57
           L++S N+F+  I   L   S+L+ L+++GN L G    +   +  +L+ L+I  N+    
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGP 262

Query: 58  IDKFVVSK--ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK--------IDNLVVPQE 107
           I    +     L L +  F G +      + + L  LD+S N           +  + + 
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 108 LRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG 167
           L LS N+F   + ++ L     LK+     N+ + E+ ES +           +LS+S  
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-----------NLSAS-- 369

Query: 168 DGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENN-TKLATLFLVNDSLAGPFWLPIH 226
                         L  + LS    +G     L +N    L  L+L N+   G     + 
Sbjct: 370 --------------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLS 286
           +   L  L +S N + G IP  +G  L  L    + +N L+G IP     +K L+ L L 
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 287 NNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMP 346
            N LTGEIP  L+  C NL ++ LSNN L           +G IP W+G L  L  + + 
Sbjct: 475 FNDLTGEIPSGLS-NCTNLNWISLSNNRL-----------TGEIPKWIGRLENLAILKLS 522

Query: 347 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 406
            N   G IP E     SL  LD++ N  +G++P+                   +    ++
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----------------FKQSGKIA 566

Query: 407 YNLLNGSIPDWIGELSQLSHLILGHN--NLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP 464
            N + G    +I             N    +G    QL  L+     ++++    G   P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 465 CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNK 524
            FDN                                              +  L +S N 
Sbjct: 627 TFDN-------------------------------------------NGSMMFLDMSYNM 643

Query: 525 LIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 584
           L G+IP +IG++  +  LNL +N+++G IP    +L+ +  LDLS NKL+G+IP  +  L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 585 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC 630
             L    ++ NNLSG I E   QF TF  + +  N  LCG PLP C
Sbjct: 704 TMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  314 bits (807), Expect = 1e-96
 Identities = 140/646 (21%), Positives = 222/646 (34%), Gaps = 146/646 (22%)

Query: 2   LNLSGNSFNNTI--LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID 59
           L+LS NS +  +  L+SL   S L+ LN++ N+L+    V     L  LE LD+  N   
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-- 162

Query: 60  KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPI 119
                           G   +  +   +    L             + L +S N     +
Sbjct: 163 --------------ISGAN-VVGWVLSDGCGEL-------------KHLAISGNKISGDV 194

Query: 120 SLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQ 179
               +     L+     +N  +  I      +     LQ L +S +   G  F + +   
Sbjct: 195 ---DVSRCVNLEFLDVSSNNFSTGIPFLGDCS----ALQHLDISGNKLSG-DFSRAISTC 246

Query: 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
            +L+ + +S  +  G  P   L++                           L  L ++ N
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKS---------------------------LQYLSLAEN 279

Query: 240 NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
              G IP  +     +L   ++S N   G++P  FG+   L+ L LS+N  +GE+P    
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 300 VGCVNLQFLMLSNNSLK--------------EGLYLTNNSLSGNIPGWLGNLTW--LIHI 343
           +    L+ L LS N                   L L++N+ SG I   L       L  +
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 344 IMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR 403
            +  N   G IP        L  L +S N +SG++PS    LS             +L+ 
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-------------KLRD 446

Query: 404 -DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSI 462
             L  N+L G IP  +  +  L  LIL  N+L GE+P  L     L  + LSNN L G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522
           P                                                L  L+ L LS 
Sbjct: 507 PKWIGR-------------------------------------------LENLAILKLSN 523

Query: 523 NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 582
           N   G+IP ++G+   +  L+L+ N   G IP+         S  ++ N + GK    + 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIK 579

Query: 583 ELKTLEVFSVAYN--NLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626
                +    A N     G   E   + +T N  +     +     
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  310 bits (797), Expect = 4e-95
 Identities = 145/608 (23%), Positives = 235/608 (38%), Gaps = 140/608 (23%)

Query: 2   LNLSGNSFN---NTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI 58
           ++LS    N   + + SSL  L+ L SL L+ + + GS+    F     L  LD+  N  
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRN-- 110

Query: 59  DKFVVSKELYLDDTGFKGTL-DIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI 117
                            G +  +    S + L+ L+                +S N    
Sbjct: 111 --------------SLSGPVTTLTSLGSCSGLKFLN----------------VSSNTLDF 140

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
           P  +      + L++     N ++               + S                  
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGAN--------VVGWVLSDGCGE------------- 179

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP-IHSHKRLGILDI 236
               L+++ +S  K++G+     +     L  L + +++ +    +P +     L  LDI
Sbjct: 180 ----LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLDI 230

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
           S N + G     I      L + NIS N   G IP     +K LQ L L+ N+ TGEIP+
Sbjct: 231 SGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287

Query: 297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV 356
            L+  C  L  L LS            N   G +P + G+ + L  + +  N+  G +P+
Sbjct: 288 FLSGACDTLTGLDLS-----------GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 357 E-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415
           +   ++  L++LD+S N  SG LP     LS   + L           DLS N  +G I 
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL-----------DLSSNNFSGPIL 385

Query: 416 DWIGE--LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYE 473
             + +   + L  L L +N   G++P  L   ++L  L LS N L G+IP    +     
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS----- 440

Query: 474 SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI 533
                                                 LS L  L L  N L G IP ++
Sbjct: 441 --------------------------------------LSKLRDLKLWLNMLEGEIPQEL 462

Query: 534 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593
             +  ++TL L +N+LTG IPS  SN  ++  + LS N+L G+IP  +  L+ L +  ++
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 594 YNNLSGEI 601
            N+ SG I
Sbjct: 523 NNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  236 bits (605), Expect = 7e-68
 Identities = 97/409 (23%), Positives = 161/409 (39%), Gaps = 82/409 (20%)

Query: 203 NNTKLATLFLVNDSLAGPFWL---PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
            + K+ ++ L +  L   F      + S   L  L +SN++I G +         SL   
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 260 NISMNALDGSIPS--SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE 317
           ++S N+L G + +  S G+   L+ L++S+N L         +   +L+ L LS      
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS------ 159

Query: 318 GLYLTNNSLSGNIPGWL---GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI 374
                 NS+SG              L H+ +  N + G +     +  +L+ LD+S NN 
Sbjct: 160 -----ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 375 SGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL 434
           S  +P      +++ +             D+S N L+G     I   ++L  L +  N  
Sbjct: 213 STGIPFLGDCSALQHL-------------DISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 435 EGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494
            G +P     L  LQ L L+ N   G IP                               
Sbjct: 260 VGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA------------------------- 292

Query: 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP 554
                               L+GL LS N   G +PP  G+ + +++L LS NN +G +P
Sbjct: 293 -----------------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 555 -STFSNLKHIESLDLSYNKLNGKIPHQLVELKT-LEVFSVAYNNLSGEI 601
             T   ++ ++ LDLS+N+ +G++P  L  L   L    ++ NN SG I
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (405), Expect = 4e-41
 Identities = 87/390 (22%), Positives = 142/390 (36%), Gaps = 75/390 (19%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
            L L  N F   I  +L++ S L SL+L+ N L G+I      SL  L +L +  N    
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNM--- 453

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK--------IDNLVVPQELRLSD 112
                         +G +  +E      LE L + +N         + N      + LS+
Sbjct: 454 -------------LEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 113 NHF--RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV 170
           N     IP  +        L I    NN  +  I             +S           
Sbjct: 500 NRLTGEIPKWIG---RLENLAILKLSNNSFSGNIPAE------LGDCRS----------- 539

Query: 171 TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKR 230
                      L ++ L+    NG  P  + + + K+A  F+         ++     K+
Sbjct: 540 -----------LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKK 585

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
                 +    +G    ++   L +    NI+     G    +F N   +  LD+S N L
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 350
           +G IP+ +      L  L L            +N +SG+IP  +G+L  L  + +  N L
Sbjct: 645 SGYIPKEIG-SMPYLFILNLG-----------HNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 351 EGPIPVEFCQLYSLQILDISDNNISGSLPS 380
           +G IP     L  L  +D+S+NN+SG +P 
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.3 bits (217), Expect = 7e-18
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 37/172 (21%)

Query: 443 CELNQLQLLDLSNNSLH---GSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQ 495
           C  +++  +DLS+  L+    ++     +     +L+ S ++ +       +S F     
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-----SVSGFKC--- 98

Query: 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP--QIGNLTRIQTLNLSYNNLTGLI 553
                            + L+ L LS N L G +     +G+ + ++ LN+S N L    
Sbjct: 99  ----------------SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 554 P-STFSNLKHIESLDLSYNKLNGKIPHQLVE---LKTLEVFSVAYNNLSGEI 601
             S    L  +E LDLS N ++G      V       L+  +++ N +SG++
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  225 bits (576), Expect = 3e-68
 Identities = 90/374 (24%), Positives = 133/374 (35%), Gaps = 96/374 (25%)

Query: 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE--IPEHLAVGCVNLQFLMLSNNSLKE 317
           +       G +  +      +  LDLS   L     IP  LA     L FL +       
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGI---- 86

Query: 318 GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS 377
                 N+L G IP  +  LT L ++ +   ++ G IP    Q+ +L  LD         
Sbjct: 87  ------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD--------- 131

Query: 378 LPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE 437
                                       SYN L+G++P  I  L  L  +    N + G 
Sbjct: 132 ---------------------------FSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 438 VPVQLCELNQL-QLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG 496
           +P      ++L   + +S N L G IPP F N  L                         
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----------------------- 201

Query: 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 556
                                + LS N L G      G+    Q ++L+ N+L   +   
Sbjct: 202 ---------------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY 616
               K++  LDL  N++ G +P  L +LK L   +V++NNL GEI +       F+ S+Y
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY 298

Query: 617 EGNTFLCGLPLPIC 630
             N  LCG PLP C
Sbjct: 299 ANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (499), Expect = 4e-57
 Identities = 78/329 (23%), Positives = 120/329 (36%), Gaps = 75/329 (22%)

Query: 224 PIHSHKRLGILDISNNNIRG--HIPVEIGDVLPSLYVFNIS-MNALDGSIPSSFGNMKFL 280
                 R+  LD+S  N+     IP  + + LP L    I  +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
             L +++  ++G IP+ L+     L  L             + N+LSG +P  + +L  L
Sbjct: 104 HYLYITHTNVSGAIPDFLS-QIKTLVTL-----------DFSYNALSGTLPPSISSLPNL 151

Query: 341 IHIIMPENHLEGPIPVEFCQLYSL-QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
           + I    N + G IP  +     L   + IS N ++G +P  F  L++  V         
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV--------- 202

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
               DLS N+L G      G       + L  N+L  ++  ++     L  LDL NN ++
Sbjct: 203 ----DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
           G++P                                                L  L  L 
Sbjct: 258 GTLPQGLTQ-------------------------------------------LKFLHSLN 274

Query: 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNN 548
           +S N L G I PQ GNL R      + N 
Sbjct: 275 VSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  103 bits (260), Expect = 2e-24
 Identities = 53/326 (16%), Positives = 105/326 (32%), Gaps = 67/326 (20%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDV-KEFDSLRDLEELDIGENKIDK 60
            +    ++   +  + T    + +L+L+G +L     +     +L  L  L IG      
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--- 87

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK--------IDNLVVPQELRLSD 112
                          G +          L  L +++          +  +     L  S 
Sbjct: 88  ------------NLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 113 NHF--RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPN--FQLQSLSLSSSYGD 168
           N     +P S+    +   L       N+++  I        P+       L        
Sbjct: 135 NALSGTLPPSI---SSLPNLVGITFDGNRISGAI--------PDSYGSFSKL-------- 175

Query: 169 GVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSH 228
                           + +S  ++ G+ P      N  LA + L  + L G   +   S 
Sbjct: 176 -------------FTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
           K    + ++ N++   +  ++G    +L   ++  N + G++P     +KFL  L++S N
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNS 314
            L GEIP+              +NN 
Sbjct: 279 NLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 6e-14
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG--LIPSTFSNLKHIESLDLS- 569
           S L          +G +        R+  L+LS  NL     IPS+ +NL ++  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 570 YNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
            N L G IP  + +L  L    + + N+SG I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 44/212 (20%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
            L ++  + +  I   L+ + +L +L+ + N+L G++      SL +L  +    N+I  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRI-- 161

Query: 61  FVVSKELYLDDTGFKGTLDI-REFDSFNNL-EVLDMSYNKID----------NLVVPQEL 108
                      +G      I   + SF+ L   + +S N++           NL     +
Sbjct: 162 -----------SG-----AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---AFV 202

Query: 109 RLSDNHF--RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSY 166
            LS N       +      +    +  H   N +  ++ +          L  L L ++ 
Sbjct: 203 DLSRNMLEGDASVL---FGSDKNTQKIHLAKNSLAFDLGKVGLSK----NLNGLDLRNNR 255

Query: 167 GDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN 198
             G T P+ L     L  + +S   + GE P 
Sbjct: 256 IYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (586), Expect = 8e-66
 Identities = 115/623 (18%), Positives = 203/623 (32%), Gaps = 99/623 (15%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           LNL+ N       ++ T  S L SL++  N++   ++ +    L  L+ L++  N++   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS-- 86

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDN 113
                           L  + F    NL  L +  N I  +             L LS N
Sbjct: 87  ---------------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 114 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFP 173
                  L        L+     NN++   +         N  L+ L LSS+       P
Sbjct: 132 GLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEF-SP 188

Query: 174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGI 233
              +    L  + L+++++       L                          ++  +  
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRN 226

Query: 234 LDISNNNIRGHIPVEIGD-VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
           L +SN+ +              +L + ++S N L+     SF  +  L+   L  N +  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
                L  G  N+++L L  +  K    ++  SL          L  L H+ M +N + G
Sbjct: 287 LFSHSLH-GLFNVRYLNLKRSFTK--QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLN 411
                F  L +L+ L +S++  S         L         ++ H  L   +L+ N ++
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTS---------LRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNSLHGSIPPCFDN-- 468
               D    L  L  L LG N +  E+  Q    L  +  + LS N         F    
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 469 --TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 526
               L        ++D         +                   L  L+ L LS N + 
Sbjct: 455 SLQRLMLRRVALKNVD---SSPSPFQP------------------LRNLTILDLSNNNIA 493

Query: 527 GHIPPQIGNLTRIQTLNLSYNNLTGLIPST--------FSNLKHIESLDLSYNKLNGKIP 578
                 +  L +++ L+L +NNL  L               L H+  L+L  N  +    
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 579 HQLVELKTLEVFSVAYNNLSGEI 601
               +L  L++  +  NNL+   
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (582), Expect = 2e-65
 Identities = 119/626 (19%), Positives = 214/626 (34%), Gaps = 78/626 (12%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           LNL  N  +     +    ++L  L+L  NS++   +   F   ++L  LD+  N +   
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST 136

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNN--LEVLDMSYNKI--------DNLV 103
            +         +EL L +   +  L   E D F N  L+ L++S N+I          + 
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 104 VPQELRLSDNHFR--IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161
               L L++      +   L     ++ ++     N+Q++   + +  L      L  L 
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLD 254

Query: 162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF 221
           LS +  + V           LEY  L +  +   F + L      +  L L         
Sbjct: 255 LSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNL--------- 303

Query: 222 WLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281
                  +      IS  ++           L  L   N+  N + G   + F  +  L+
Sbjct: 304 ------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 282 LLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI 341
            L LSN+  +            N  F+ L+++ L   L LT N +S         L  L 
Sbjct: 357 YLSLSNSFTSLRTLT-------NETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLE 408

Query: 342 HIIMPENHLEGPIPV-EFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHR 399
            + +  N +   +   E+  L ++  + +S N       + F  + S++++ L +  L  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
                        S P     L  L+ L L +NN+       L  L +L++LDL +N+L 
Sbjct: 469 -----------VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISF--FIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
             +    +           S L     +    F E P   F             L  L  
Sbjct: 518 -RLWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKD-----------LFELKI 564

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFS-NLKHIESLDLSYNKLNGK 576
           + L  N L         N   +++LNL  N +T +    F    +++  LD+ +N  +  
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 577 IPHQLVELKTLEVFSVAYNNLSGEIL 602
                  +  +         LS   L
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (580), Expect = 6e-65
 Identities = 124/655 (18%), Positives = 215/655 (32%), Gaps = 112/655 (17%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L++  N+ +         L  L+ LNL  N L    D K F    +L EL +  N I   
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQ-- 110

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDN 113
                           +    F    NL  LD+S+N + +  +         QEL LS+N
Sbjct: 111 ---------------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 114 HFR-IPISLEPLFNHSRLKIFHAKNNQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVT 171
             + +      +F +S LK     +NQ+        H++     +L  L L++       
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG----RLFGLFLNNVQLGPSL 211

Query: 172 FPKFLYHQHD--LEYVRLSHIKMNGEFPNWLLE-NNTKLATLFLVNDSLAGPFWLPIHSH 228
             K      +  +  + LS+ +++       L    T L  L L  ++L           
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 229 KRLGILDISNNNIRGHIPVEIG--------DVLPSLYVFNISMNALDGSIPSSFGNMKFL 280
            +L    +  NNI+      +         ++  S    +IS+ +L      SF  +K L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
           + L++ +N + G        G +NL++L LSN+       LTN +            + L
Sbjct: 332 EHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFT-SLRTLTNETFVSL------AHSPL 383

Query: 341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP-SCFHPLSIEQVHLSKNMLHR 399
             + + +N +       F  L  L++LD+  N I   L    +  L              
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE------------- 430

Query: 400 QLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG--EVPVQLCELNQLQLLDLSNN 456
            +    LSYN       +    +  L  L+L    L+     P     L  L +LDLSNN
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 457 SLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
           ++        +       L   +NN + L +                             
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWK----------------------------- 521

Query: 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
                     +   G     +  L+ +  LNL  N    +    F +L  ++ +DL  N 
Sbjct: 522 ----------HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY-EGNTFLCGLP 626
           LN           +L+  ++  N ++    +                N F C   
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (531), Expect = 4e-58
 Identities = 115/535 (21%), Positives = 186/535 (34%), Gaps = 68/535 (12%)

Query: 88  NLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
           + EV D S+ K+    VP         L L+ N  R   +      +S+L       N +
Sbjct: 5   SHEVADCSHLKLTQ--VPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTI 61

Query: 141 NAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW 199
           +    E    L      L+ L+L  +    ++  K      +L  + L    +     N 
Sbjct: 62  SKLEPELCQKLP----MLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNN- 115

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV-LPSLYV 258
                  L TL L ++ L+          + L  L +SNN I+     E+      SL  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG 318
             +S N +    P  F  +  L  L L+N QL   + E L         L L+N S++  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--------CLELANTSIRN- 226

Query: 319 LYLTNNSLSGNIPGWLGNLTW--LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376
           L L+N+ LS         L W  L  + +  N+L       F  L  L+   +  NNI  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 377 SLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE 435
                 H L ++  ++L ++      K+ +S   L          L  L HL +  N++ 
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSF----TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 436 GEVPVQLCELNQLQLLDLSNNSLHGSIPP--CFDN------TTLYESYNNSSSLDEKFEI 487
           G        L  L+ L LSN+           F +        L  + N          I
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK---------I 393

Query: 488 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ-IGNLTRIQTLNLSY 546
           S         F+            L  L  L L  N++   +  Q    L  I  + LSY
Sbjct: 394 SKIES---DAFSW-----------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 547 NNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVELKTLEVFSVAYNNLSG 599
           N    L  ++F+ +  ++ L L    L      P     L+ L +  ++ NN++ 
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (417), Expect = 7e-43
 Identities = 68/381 (17%), Positives = 122/381 (32%), Gaps = 82/381 (21%)

Query: 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 289
              + D S+  +   +P ++     ++ V N++ N L     ++F     L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 290 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH 349
           ++   PE        L+ L L +N L                                  
Sbjct: 61  ISKLEPELCQ-KLPMLKVLNLQHNELS--------------------------------- 86

Query: 350 LEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYN 408
                   F    +L  L +  N+I     + F                  L   DLS+N
Sbjct: 87  --QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-------------NLITLDLSHN 131

Query: 409 LLNGSIPDWIGELSQLSHLILGHNNLEG--EVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466
            L+ +      +L  L  L+L +N ++      + +   + L+ L+LS+N +    P CF
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 467 DN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522
                   L+ +                               +      + +  L LS 
Sbjct: 192 HAIGRLFGLFLNNVQ--------------------LGPSLTEKLCLELANTSIRNLSLSN 231

Query: 523 NKLIGHIPPQIGNL--TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 580
           ++L          L  T +  L+LSYNNL  +   +F+ L  +E   L YN +     H 
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 581 LVELKTLEVFSVAYNNLSGEI 601
           L  L  +   ++  +     I
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (377), Expect = 1e-37
 Identities = 85/466 (18%), Positives = 148/466 (31%), Gaps = 79/466 (16%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           ML+LS N+ N     S   L  L    L  N+++          L ++  L++  +   +
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQ 310

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 120
            +    L          +D   F     LE L+M  N I                   I 
Sbjct: 311 SISLASL--------PKIDDFSFQWLKCLEHLNMEDNDIPG-----------------IK 345

Query: 121 LEPLFNHSRLKIFHAKNNQMNAEITESHSLTA-PNFQLQSLSLSSSYGDGVTFPKFLYHQ 179
                    LK     N+  +     + +  +  +  L  L+L+ +    +         
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWL 404

Query: 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
             LE + L   ++  E                                   +  + +S N
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLEN------------------------IFEIYLSYN 440

Query: 240 NIRGHIPVEIGDVLPSLYVFNISMNALDG--SIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
                        +PSL    +   AL    S PS F  ++ L +LDLSNN +     + 
Sbjct: 441 KYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 298 LAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE 357
           L  G   L+ L L +N+L     L  ++  G    +L  L+ L  + +  N  +      
Sbjct: 500 LE-GLEKLEILDLQHNNLA---RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 358 FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPD 416
           F  L+ L+I+D+  NN++    S F+                 LK  +L  NL+      
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQV-------------SLKSLNLQKNLITSVEKK 602

Query: 417 WIGE-LSQLSHLILGHNNLEGEVP-----VQLCELNQLQLLDLSNN 456
             G     L+ L +  N  +         V         + +LS++
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (367), Expect = 2e-36
 Identities = 70/321 (21%), Positives = 107/321 (33%), Gaps = 58/321 (18%)

Query: 303 VNLQFLMLSNNSLKE----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
           V+ +    S+  L +           L LT+N L           + L  + +  N +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLN 411
             P    +L  L++L++  N +S      F   +              L    L  N + 
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-------------NLTELHLMSNSIQ 110

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN--- 468
               +   +   L  L L HN L         +L  LQ L LSNN +        D    
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 469 ---TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL 525
                L  S N                   G F             +  L GL+L+  +L
Sbjct: 171 SSLKKLELSSNQIKEF------------SPGCFHA-----------IGRLFGLFLNNVQL 207

Query: 526 IGHIPPQIG---NLTRIQTLNLSYNNLTGLIPSTFSNLK--HIESLDLSYNKLNGKIPHQ 580
              +  ++      T I+ L+LS + L+    +TF  LK  ++  LDLSYN LN      
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 581 LVELKTLEVFSVAYNNLSGEI 601
              L  LE F + YNN+    
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLF 288

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (288), Expect = 1e-26
 Identities = 43/249 (17%), Positives = 70/249 (28%), Gaps = 59/249 (23%)

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGEL 421
           ++ +L+++ N +     + F   S             QL   D+ +N ++   P+   +L
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYS-------------QLTSLDVGFNTISKLEPELCQKL 72

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSL 481
             L  L L HN L             L  L L +NS+       F               
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK------------- 119

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT 541
                                            L  L LS N L          L  +Q 
Sbjct: 120 ------------------------------QKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 542 LNLSYNNLTGLIPSTFSNLKH--IESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
           L LS N +  L         +  ++ L+LS N++    P     +  L    +    L  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 600 EILEWTAQF 608
            + E     
Sbjct: 210 SLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 46/182 (25%)

Query: 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLD 482
                   H  L  +VP  L     + +L+L++N L       F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 483 EKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
                                         S L+ L +  N +    P     L  ++ L
Sbjct: 48  -----------------------------YSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78

Query: 543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602
           NL +N L+ L   TF+   ++  L L  N +     +  V+ K L    +++N LS   L
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 603 EW 604
             
Sbjct: 139 GT 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (566), Expect = 2e-63
 Identities = 92/632 (14%), Positives = 174/632 (27%), Gaps = 106/632 (16%)

Query: 3   NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFV 62
           N   + +      SL     +  L+L G    G +       L +LE L +G +      
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGE---- 117

Query: 63  VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLE 122
                       +     +   +  + E                            +  +
Sbjct: 118 ---------KVNERLFGPKGISANMSDEQKQKMRMHYQKT---------------FVDYD 153

Query: 123 PLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDL 182
           P  + S L      ++     I +S  +T     L+   +     +     K +     L
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRIT-----LKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIR 242
               + +     E      EN                   L   + K L  +++ N    
Sbjct: 209 RQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 243 GHIPVEIGDVLPSLYVFNISMNAL--------DGSIPSSFGNMKFLQLLDLSNNQL-TGE 293
             +P  +   LP + + N++ N          D    +     + +Q++ +  N L T  
Sbjct: 263 TKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 294 IPEHLAVGCVNLQFLMLSNNSLK------------EGLYLTNNSLSGNIPGWLGNLTWLI 341
           +   L      L  L    N L+              L L  N ++     + G    + 
Sbjct: 322 VETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 342 HIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQ 400
           ++    N L+  P   +   +  +  +D S N I       F PL               
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN------ 434

Query: 401 LKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-------EVPVQLCELNQLQLLD 452
           +   +LS N ++    +     S LS + L  N L         +          L  +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 453 LSNNSLHGSIPPCFDNTTLYE------SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI 506
           L  N L   +   F  TTL        SYN+ S              P     +  +   
Sbjct: 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF------------PTQPLNSSTL--- 538

Query: 507 YQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 566
              K   + +      N+ +   P  I     +  L +  N++  +      N+     L
Sbjct: 539 ---KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVL 592

Query: 567 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           D+  N         +       ++ + Y+   
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (481), Expect = 1e-51
 Identities = 63/451 (13%), Positives = 133/451 (29%), Gaps = 64/451 (14%)

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSH----KRLGILDIS 237
           +  + L     +G  P+  +   T+L  L L +        L                  
Sbjct: 83  VTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 238 NNNIRGHIPVEIGD-VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
             + +              L    I+ +    SI  S         +   +N +T  + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 297 HLAVGCVNLQFLMLSNNSL--------KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
            +      L+   + N+           E                  NL  L  + +   
Sbjct: 201 AVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSY 407
                +P     L  +Q+++++ N            L  +   L+   +  +++   + Y
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGIS-----GEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 408 N-LLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466
           N L    +   + ++ +L  L   +N LEG++P       +L  L+L+ N +        
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC 373

Query: 467 DNTT----LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522
             T     L  ++N    +   F+                         +S++S +  S 
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKS----------------------VSVMSAIDFSY 411

Query: 523 NKL-------IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
           N++          + P       + ++NLS N ++      FS    + S++L  N L  
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 576 -------KIPHQLVELKTLEVFSVAYNNLSG 599
                             L    + +N L+ 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  180 bits (458), Expect = 2e-48
 Identities = 49/380 (12%), Positives = 109/380 (28%), Gaps = 70/380 (18%)

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG----SIPSSFGNMKFL 280
           ++S+ R+  L +      G +P  IG  L  L V  +  +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
           +              ++         F  L  +       + ++    +I          
Sbjct: 136 EQKQKMRMHYQKTFVDYDP----REDFSDLIKD------CINSDPQQKSIKKSSRITLKD 185

Query: 341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQ 400
             I    N++   +     +L  L+   + ++                            
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-------------- 230

Query: 401 LKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG 460
              +  Y     +       L  L+ + + +     ++P  L  L ++QL++++ N    
Sbjct: 231 ---NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 461 SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 520
                 D   L ++                                        +  +Y+
Sbjct: 288 GEQLKDDWQALADAPVGEK-----------------------------------IQIIYI 312

Query: 521 SCNKLI-GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
             N L    +   +  + ++  L   YN L G +P+ F +   + SL+L+YN++     +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPAN 371

Query: 580 QLVELKTLEVFSVAYNNLSG 599
                + +E  S A+N L  
Sbjct: 372 FCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  156 bits (396), Expect = 2e-40
 Identities = 56/446 (12%), Positives = 132/446 (29%), Gaps = 86/446 (19%)

Query: 188 SHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG---- 243
             + M G  P   L +N ++  L L     +G     I     L +L + ++  +     
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 244 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL--LDLSNNQLTGEIPEHLAVG 301
             P  I     S             +         F  L    ++++     I +   + 
Sbjct: 124 FGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI- 181

Query: 302 CVNLQFLMLSNNSLK------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH 349
            +    +   +N++                Y+ N+                 +       
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQ 236

Query: 350 LEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYN 408
                 +++  L  L  +++ +      LP+    L  ++ ++++ N             
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----SGEQL 291

Query: 409 LLNGSIPDWIGELSQLSHLILGHNNL-EGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD 467
             +           ++  + +G+NNL    V   L ++ +L +L+   N L G   P F 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFG 350

Query: 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
           +                                              L+ L L+ N++  
Sbjct: 351 S-------------------------------------------EIKLASLNLAYNQI-T 366

Query: 528 HIPPQI-GNLTRIQTLNLSYNNLTGLIPSTF-SNLKHIESLDLSYNKLNG-------KIP 578
            IP    G   +++ L+ ++N L  +       ++  + ++D SYN++          + 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 579 HQLVELKTLEVFSVAYNNLSGEILEW 604
               +   +   +++ N +S    E 
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  150 bits (382), Expect = 1e-38
 Identities = 65/506 (12%), Positives = 141/506 (27%), Gaps = 114/506 (22%)

Query: 1   MLNLSGNSF-------------------NNTILSSLTHLSSLRSLNLNGNSLEGSIDVKE 41
              +  + F                     T      +L  L  + +        +    
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TF 268

Query: 42  FDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN 101
             +L +++ +++  N+       K+ +           + +      ++++ + YN +  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDW---------QALADAPVGEKIQIIYIGYNNLKT 319

Query: 102 LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161
             V                   L    +L +     NQ+  ++    S      +L SL+
Sbjct: 320 FPVETS----------------LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLN 359

Query: 162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG-P 220
           L+ +                    +++ I      P        ++  L   ++ L   P
Sbjct: 360 LAYN--------------------QITEI------PANFCGFTEQVENLSFAHNKLKYIP 393

Query: 221 FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 280
                 S   +  +D S N I                            +  +      +
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNF------------------DPLDPTPFKGINV 435

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
             ++LSNNQ++    E  +     L  + L  N L E       +   +      N   L
Sbjct: 436 SSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTE----IPKNSLKDENENFKNTYLL 490

Query: 341 IHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
             I +  N L           L  L  +D+S N+ S       +  +++   +       
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ---- 546

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
              RD   N      P+ I     L+ L +G N++   V  ++     + +LD+ +N   
Sbjct: 547 ---RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI 600

Query: 460 GSIPPCFDNTT----LYESYNNSSSL 481
                              Y+ +  +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (360), Expect = 9e-36
 Identities = 46/361 (12%), Positives = 100/361 (27%), Gaps = 76/361 (21%)

Query: 250 GDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309
           G    + + FN  ++        S  +   +  L L     +G +P+ +      L  L 
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG----QLTEL- 107

Query: 310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 369
                  E L L ++    N                         P       S +    
Sbjct: 108 -------EVLALGSHGEKVNER--------------------LFGPKGISANMSDEQKQK 140

Query: 370 SDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLIL 429
              +   +             +  +      +K  ++ +    SI        + + +  
Sbjct: 141 MRMHYQKTFVD----------YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 430 GHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISF 489
             NN+   V   +  L +L+   + N+                E      + D K++   
Sbjct: 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-- 247

Query: 490 FIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 549
                                 L  L+ + +     +  +P  +  L  +Q +N++ N  
Sbjct: 248 ----------------------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 550 TGL--------IPSTFSNLKHIESLDLSYNKL-NGKIPHQLVELKTLEVFSVAYNNLSGE 600
                        +     + I+ + + YN L    +   L ++K L +    YN L G+
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 601 I 601
           +
Sbjct: 346 L 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 9/62 (14%), Positives = 22/62 (35%)

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 600
             N   +        + ++   +  L L     +G++P  + +L  LEV ++  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 601 IL 602
             
Sbjct: 121 ER 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  211 bits (539), Expect = 8e-60
 Identities = 101/623 (16%), Positives = 184/623 (29%), Gaps = 119/623 (19%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LS N   +    S      L+ L+L+   ++   D   + SL  L  L +  N I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQ-- 89

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDN 113
                          +L +  F   ++L+ L      + +L           +EL ++ N
Sbjct: 90  ---------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 114 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFP 173
             +     E   N + L+     +N++ +              L +LSL  S        
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGI 233
              + +  L  + L +   +       ++    L    LV                   +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG----------NL 243

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGS---IPSSFGNMKFLQLLDLSNNQL 290
                + + G         L +L +    +  LD     I   F  +  +    L +  +
Sbjct: 244 EKFDKSALEG---------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSL--------KEGLYLTNNSLSGNIPGWLGNLTWLIH 342
                          Q L L N           K    LT  S  G       +L  L  
Sbjct: 295 ERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 343 IIMPENHL--EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQ 400
           + +  N L  +G          SL+ LD+S N +     +      +E +          
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL---------- 401

Query: 401 LKRDLSYNLLNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
              D  ++ L       +   L  L +L + H +           L+ L++L ++ NS  
Sbjct: 402 ---DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
            +  P                                               L  L+ L 
Sbjct: 459 ENFLPDI------------------------------------------FTELRNLTFLD 476

Query: 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
           LS  +L    P    +L+ +Q LN+S+NN   L    +  L  ++ LD S N +      
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 580 QLVEL-KTLEVFSVAYNNLSGEI 601
           +L     +L   ++  N+ +   
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTC 559

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  173 bits (440), Expect = 3e-46
 Identities = 99/594 (16%), Positives = 187/594 (31%), Gaps = 124/594 (20%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
            S ++L+L+ N L        F S  +L+ LD+   +I                   ++ 
Sbjct: 28  FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-----------------IED 69

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
             + S ++L  L ++ N I +L                 +   L +   L+   A    +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSL--------------ALGAFSGLSS---LQKLVAVETNL 112

Query: 141 NAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW 199
            +        L      L+ L+++ +       P++  +  +LE++ LS  K+   +   
Sbjct: 113 ASLENFPIGHLK----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
           L      L  + L+N SL                                          
Sbjct: 169 L----RVLHQMPLLNLSL------------------------------------------ 182

Query: 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGL 319
           ++S+N ++   P +F  ++ L  L L NN  +  + +    G   L+   L     +   
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-- 239

Query: 320 YLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE---GPIPVEFCQLYSLQILDISDNNISG 376
                +L       L  L  L        +L+     I   F  L ++    +    I  
Sbjct: 240 ---EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 377 SLPSCFHPLSIEQVHLSKNMLHR------QLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
                ++    + + L      +      +  + L++    G       +L  L  L L 
Sbjct: 297 VKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 431 HNNL--EGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEIS 488
            N L  +G           L+ LDLS N +            L       S+L +  E S
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 489 FFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN 548
            F                     L  L  L +S              L+ ++ L ++ N+
Sbjct: 416 VF-------------------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 549 LTGLI-PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
                 P  F+ L+++  LDLS  +L    P     L +L+V ++++NN     
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  159 bits (403), Expect = 2e-41
 Identities = 75/448 (16%), Positives = 134/448 (29%), Gaps = 47/448 (10%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LS N  N     +   +  L  L L  N    ++       L  LE   +   +    
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI----DNLVVPQELRLSDNHFRI 117
              ++           L I        L  LD   + I    + L       L       
Sbjct: 241 GNLEKFDKSALEGLCNLTI----EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
              ++    +   +     N +           T     L+ L+ +S+ G        L 
Sbjct: 296 --RVKDFSYNFGWQHLELVNCKFG------QFPTLKLKSLKRLTFTSNKGGNAFSEVDL- 346

Query: 178 HQHDLEYVRLSHIKMNG-EFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
               LE++ LS   ++     +      T L  L L  + +       +   + L  LD 
Sbjct: 347 --PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDF 403

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
            ++N++      +   L +L   +IS      +    F  +  L++L ++ N        
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV 356
            +     NL FL LS              L    P    +L+ L  + M  N+       
Sbjct: 464 DIFTELRNLTFLDLS-----------QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 357 EFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP- 415
            +  L SLQ+LD S N+I  S              L           +L+ N    +   
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-----------NLTQNDFACTCEH 561

Query: 416 -DWIGELSQLSHLILGHNNLEGEVPVQL 442
             ++  +     L++    +E   P   
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 3e-41
 Identities = 73/396 (18%), Positives = 128/396 (32%), Gaps = 48/396 (12%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
                  N    IP    ++  S    ++S N L      SF +   LQ+LDLS  ++  
Sbjct: 11  TYQCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLK-------------EGLYLTNNSLSGNIPGWLGNLTW 339
                      +L  L+L+ N ++             + L     +L+      +G+L  
Sbjct: 67  IEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 340 LIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
           L  + +  N ++   +P  F  L +L+ LD+S N I     +    L          M  
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--------QMPL 177

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNS 457
             L  DLS N +N   P    E+  L  L L +N     V     + L  L++  L    
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 458 LHGS------IPPCFDN-TTLYESYNNSSSLDEKFEISFFIEGPQG-----DFTTKNIAY 505
                          +    L       + LD   +    +             +  I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 506 IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIES 565
           +           L L   K       ++ +L       L++ +  G    +  +L  +E 
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEF 351

Query: 566 LDLSYNKLN--GKIPHQLVELKTLEVFSVAYNNLSG 599
           LDLS N L+  G          +L+   +++N +  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (395), Expect = 2e-40
 Identities = 86/533 (16%), Positives = 155/533 (29%), Gaps = 113/533 (21%)

Query: 86  FNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145
             + + LD+S+N + +L                      F+   L++      ++     
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS-----------------FFSFPELQVLDLSRCEIQTIE- 68

Query: 146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT 205
                                               L  + L+   +            +
Sbjct: 69  ---------------------------DGAYQSLSHLSTLILTGNPIQSLALGA-FSGLS 100

Query: 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA 265
            L  L  V  +LA     PI   K L  L++++N I+                       
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS---------------------- 138

Query: 266 LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNS 325
               +P  F N+  L+ LDLS+N++       L      +  L LS       L L+ N 
Sbjct: 139 --FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLS-------LDLSLNP 188

Query: 326 LSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ-LYSLQILDISDNNISGSLPSCFHP 384
           ++   PG    +  L  + +  N     +     Q L  L++  +               
Sbjct: 189 MNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 385 LSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE 444
            S  +   +  +   +L      +     I D    L+ +S   L    +E         
Sbjct: 248 KSALEGLCNLTIEEFRLA---YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 445 LNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKF--------------EISFF 490
               Q L+L N            +       +N                       +SF 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550
               Q DF T +            L  L LS N +I  +      L +++ L+  ++NL 
Sbjct: 363 GCCSQSDFGTTS------------LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 551 GLIP-STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602
            +   S F +L+++  LD+S+             L +LEV  +A N+     L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (260), Expect = 2e-23
 Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           DLS+N L            +L  L L    ++         L+ L  L L+ N +     
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 464 PCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
             F        L     N +SL      +F I                    L  L  L 
Sbjct: 94  GAFSGLSSLQKLVAVETNLASL-----ENFPIGH------------------LKTLKELN 130

Query: 520 LSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIE----SLDLSYNKLN 574
           ++ N +    +P    NLT ++ L+LS N +  +  +    L  +     SLDLS N +N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 575 GKIPHQLVELKTLEVFSVAYNNLSGEILE 603
              P    E++ L   ++  N  S  +++
Sbjct: 191 FIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 3e-17
 Identities = 45/303 (14%), Positives = 87/303 (28%), Gaps = 43/303 (14%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGS-IDVKEFDSLRDLEELDIGENKID 59
           +  L+  S       S   L SL  L+L+ N L       +       L+ LD+  N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 60  KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPI 119
                                  F     LE LD  ++ +  +                 
Sbjct: 387 TM------------------SSNFLGLEQLEHLDFQHSNLKQM----------------S 412

Query: 120 SLEPLFNHSRLKIFHAKNNQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYH 178
                 +   L      +           + L+     L+ L ++ +       P     
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS----SLEVLKMAGNSFQENFLPDIFTE 468

Query: 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN 238
             +L ++ LS  ++    P     + + L  L + +++       P      L +LD S 
Sbjct: 469 LRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 239 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS--FGNMKFLQLLDLSNNQLTGEIPE 296
           N+I      E+     SL   N++ N    +         +K  + L +   ++    P 
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 297 HLA 299
              
Sbjct: 588 DKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
            IP  +      + L+LS+N L  L   +F +   ++ LDLS  ++          L  L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 588 EVFSVAYNNLSGEILEW 604
               +  N +    L  
Sbjct: 79  STLILTGNPIQSLALGA 95

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  214 bits (547), Expect = 2e-59
 Identities = 88/632 (13%), Positives = 171/632 (27%), Gaps = 106/632 (16%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
            N   + + +     L +   +  L+L G   +G +       L +L+ L  G +     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSE--- 359

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                           L     +   +   +      +D         L  +       +
Sbjct: 360 -----TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
           +P+   SR+                          L+   + +         K +     
Sbjct: 415 KPIKKDSRIS-------------------------LKDTQIGNLTNRITFISKAIQRLTK 449

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
           L+ +  ++     +      E+          N+ L+        + K L  +++ N   
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS------WSNLKDLTDVELYNCPN 503

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDG---------SIPSSFGNMKFLQLLDLSNNQLTG 292
              +P  + D LP L   NI+ N              +         +Q+  +  N L  
Sbjct: 504 MTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLTWLI 341
                     V L  L   +N ++             L L  N +      +      + 
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 342 HIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ-VHLSKNMLHR 399
            +    N L+  P       +Y +  +D S N I     +    +   + ++ S      
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV---- 678

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE-------GEVPVQLCELNQLQLLD 452
                LSYN +     +     S +S +IL +N +                    L  +D
Sbjct: 679 ----TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 453 LSNNSLHGSIPPCFDNTTLYE------SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI 506
           L  N L  S+   F  TTL        SYN  SS                          
Sbjct: 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPT------------------QPLNS 775

Query: 507 YQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 566
            Q K   +        N+++   P  I     +  L +  N++  +       L     L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---L 832

Query: 567 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           D++ N         +       ++ + Y+   
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (452), Expect = 6e-47
 Identities = 73/491 (14%), Positives = 152/491 (30%), Gaps = 52/491 (10%)

Query: 136 KNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE 195
             + +     E+ S+   +F +    L+      +   +   +  D  Y  L  I    +
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKD--YKALKAIWEALD 282

Query: 196 FPNWLLENNTKLATLFLVN-------DSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVE 248
             NW   + T   T+  +N       D       + + ++ R+  L ++    +G +P  
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 249 IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 308
           IG  L  L V +   ++   S            + +   +++     +        L   
Sbjct: 343 IGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILD 368
            L  +++        N     I            I    N +   I     +L  LQI+ 
Sbjct: 402 DLLQDAI------NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIY 454

Query: 369 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLI 428
            +++  +    +                       +  Y     +       L  L+ + 
Sbjct: 455 FANSPFTYDNIAVD-----------------WEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 429 LGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEIS 488
           L +     ++P  L +L +LQ L+++ N    +     D T L +  +    + + F + 
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI-QIFYMG 556

Query: 489 F--FIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY 546
           +    E P      K          +  L  L    NK+        G   ++  L L Y
Sbjct: 557 YNNLEEFPASASLQK----------MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 547 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH--QLVELKTLEVFSVAYNNLSGEILEW 604
           N +  +     +    +E L  S+NKL   IP+      +  +     +YN +  E    
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 605 TAQFATFNKSS 615
           +     +   +
Sbjct: 664 SCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (384), Expect = 3e-38
 Identities = 80/521 (15%), Positives = 139/521 (26%), Gaps = 146/521 (28%)

Query: 1   MLNLSGNSF-------------------NNTILSSLTHLSSLRSLNLNGNSLEGSIDVKE 41
           ++  + + F                         S ++L  L  + L        +    
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DF 510

Query: 42  FDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN 101
              L +L+ L+I  N+         +         T    + D+   +++  M YN ++ 
Sbjct: 511 LYDLPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 102 LVVP---------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA 152
                          L    N  R    LE    + +L       NQ             
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQ------------- 606

Query: 153 PNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFL 212
                                             +  I      P        ++  L  
Sbjct: 607 ----------------------------------IEEI------PEDFCAFTDQVEGLGF 626

Query: 213 VNDSLAG-PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLP-----SLYVFNISMNAL 266
            ++ L   P      S   +G +D S N I       I   +      +     +S N +
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 267 DGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSL 326
                  F     +  + LSNN +T  IPE                            + 
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMT-SIPE----------------------------NS 716

Query: 327 SGNIPGWLGNLTWLIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL 385
                G   N   L  I +  N L           L  L  +D+S N  S S P+     
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNS 775

Query: 386 S-IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE 444
           S ++   +          RD   N +    P  I     L  L +G N++  +V  +L  
Sbjct: 776 SQLKAFGIRHQ-------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-- 825

Query: 445 LNQLQLLDLSNNSL----HGSIPPCFDNTTLYESYNNSSSL 481
             QL +LD+++N        S+ P  +       Y+ +  +
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 12/86 (13%), Positives = 27/86 (31%)

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 600
             N   +           N   +  L L+     G++P  + +L  L+V S   ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 601 ILEWTAQFATFNKSSYEGNTFLCGLP 626
              +  +  T + S    +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (483), Expect = 4e-52
 Identities = 109/622 (17%), Positives = 195/622 (31%), Gaps = 125/622 (20%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           ++LS N        S ++ S L+ L+L+   +E +I+ K +  L  L  L +  N I  F
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------- 105
                      + L   +T     L+         L+ L++++N I +  +P        
Sbjct: 96  SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 106 -QELRLSDNHFR--IPISLEPLFN-HSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161
              + LS N+ +      L+ L              N     I           +L  L+
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP----IDFIQDQAFQGIKLHELT 210

Query: 162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF 221
           L  ++         L +   L   RL   +   E    + E +            +    
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI-----MEGLCDV---- 261

Query: 222 WLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281
                    +    ++  N                                 F  +  + 
Sbjct: 262 --------TIDEFRLTYTNDFS-------------------------DDIVKFHCLANVS 288

Query: 282 LLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI 341
            + L+   +   + +         Q L +    LK+             P    +L +L 
Sbjct: 289 AMSLAGVSIK-YLEDV--PKHFKWQSLSIIRCQLKQ------------FPT--LDLPFLK 331

Query: 342 HIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQL 401
            + +  N            L SL  LD+S N +S S    +  L    +        R L
Sbjct: 332 SLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL--------RHL 381

Query: 402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNSLHG 460
             DLS+N     +      L +L HL   H+ L+          L +L  LD+S  +   
Sbjct: 382 --DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 461 SIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
                F       TL  + N+            F +    +               + L+
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNS------------FKDNTLSNVFAN----------TTNLT 476

Query: 517 GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576
            L LS  +L          L R+Q LN+S+NNL  L  S ++ L  + +LD S+N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 577 IPHQLVELKTLEVFSVAYNNLS 598
                   K+L  F++  N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (443), Expect = 9e-47
 Identities = 100/627 (15%), Positives = 197/627 (31%), Gaps = 136/627 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
                   +  +   +   SS ++++L+ N L+  +    F +  +L+ LD+   +I+  
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET- 70

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                           ++ + +   ++L  L ++ N I +                P S 
Sbjct: 71  ----------------IEDKAWHGLHHLSNLILTGNPIQSF--------------SPGSF 100

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQH 180
             L +   L+   A   ++ +  +     L      L+ L+++ ++      P +  +  
Sbjct: 101 SGLTS---LENLVAVETKLASLESFPIGQLI----TLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 181 DLEYVRLSHIKMNGEFPN---WLLENNTKLATLFLVNDSL----AGPFWLPIHSHKRLGI 233
           +L +V LS+  +     N   +L EN     +L +  + +       F        +L  
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-----KLHE 208

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSI------PSSFGNMKFLQL--LDL 285
           L +  N    +I       L  L+V  + +             PS    +  + +    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWL 334
           +      +          N+  + L+  S+K           + L +    L       L
Sbjct: 269 TYTNDFSDDIVKFH-CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 394
             L  L    +  N            L SL  LD+S N +S S    +  L    +    
Sbjct: 328 PFLKSL---TLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL---- 378

Query: 395 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDL 453
               R L  DLS+N     +      L +L HL   H+ L+          L +L  LD+
Sbjct: 379 ----RHL--DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 454 SNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS 513
           S  +        F                                             L+
Sbjct: 432 SYTNTKIDFDGIFLG-------------------------------------------LT 448

Query: 514 LLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
            L+ L ++ N    +    +  N T +  L+LS   L  +    F  L  ++ L++S+N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 573 LNGKIPHQLVELKTLEVFSVAYNNLSG 599
           L         +L +L     ++N +  
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 27/166 (16%)

Query: 436 GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT--LYESYNNSSSLDEKFEISFFIEG 493
           G +   +  +  +      +  L   +P    ++T  +  S+N    L            
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLS-KVPDDIPSSTKNIDLSFNPLKIL------------ 47

Query: 494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 553
               F+             S L  L LS  ++          L  +  L L+ N +    
Sbjct: 48  KSYSFSN-----------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 554 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
           P +FS L  +E+L     KL       + +L TL+  +VA+N +  
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (473), Expect = 8e-51
 Identities = 112/620 (18%), Positives = 190/620 (30%), Gaps = 134/620 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L  S N       ++ + L +L  L+L    +   I    F S   L+ L +  N +   
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLI-- 94

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDN 113
                           +          L+ L      I ++           + L L  N
Sbjct: 95  ---------------FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 114 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ-LQSLSLSSSYGDGVTF 172
           H    I L   F   +LK+   +NN     I         + Q   +LSL+ +  D    
Sbjct: 140 HISS-IKLPKGFPTEKLKVLDFQNNA----IHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 173 PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLG 232
               +     + +     +        L  +  +                        L 
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-----------------------SLW 231

Query: 233 ILDISNNNIRGHIPVEI-GDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 291
           +    + +     P    G    S+   N+  +       ++F     LQ LDL+   L+
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 351
            E+P  L  G   L+ L            L+ N           N   L H+ +  N   
Sbjct: 292 -ELPSGLV-GLSTLKKL-----------VLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 352 GPIPVE-FCQLYSLQILDISDNNI--SGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSY 407
             +       L +L+ LD+S ++I  S         LS              L+  +LSY
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-------------HLQSLNLSY 385

Query: 408 NLLNGSIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466
           N       +   E  QL  L L    L+  +       L+ L++L+LS++ L  S    F
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL- 525
           D                                            L  L  L L  N   
Sbjct: 446 DG-------------------------------------------LPALQHLNLQGNHFP 462

Query: 526 --IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583
                    +  L R++ L LS+ +L+ +    F++LK +  +DLS+N+L       L  
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 584 LKTLEVFSVAYNNLSGEILE 603
           LK +   ++A N++S  +  
Sbjct: 523 LKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 46/196 (23%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           +     LN  IP  +   +    L    N L          L  L  LDL+   ++    
Sbjct: 18  NCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 464 PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523
             F +                                              L  L L+ N
Sbjct: 75  DTFQS-------------------------------------------QHRLDTLVLTAN 91

Query: 524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583
            LI      +     ++ L      ++ +      N K +ESL L  N ++     +   
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 584 LKTLEVFSVAYNNLSG 599
            + L+V     N +  
Sbjct: 152 TEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 451 LDLSNNSLHGSIPPCFDNTT--LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 508
            +  N  L+  IP    N+T  L  S+N   ++                F          
Sbjct: 17  YNCENLGLN-EIPGTLPNSTECLEFSFNVLPTI------------QNTTF---------- 53

Query: 509 GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 568
              L  L+ L L+  ++         +  R+ TL L+ N L  +  +  S  K ++ L  
Sbjct: 54  -SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 569 SYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
               ++      L   KTLE   +  N++S 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (466), Expect = 8e-49
 Identities = 145/715 (20%), Positives = 244/715 (34%), Gaps = 123/715 (17%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L LS N       SS   L  L+ L L       +ID + F +L +L  LD+G +KI   
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-- 86

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP----------QELRLS 111
                           L    F    +L  L + +  + + V+             L LS
Sbjct: 87  ---------------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 112 DNHFRIPISLEPLFNH-SRLKIFHAKNNQMNAEITES-HSLTAPNFQLQSLSLSSSYGDG 169
            N  R  + L P F   + LK     +NQ+          L      L   SL+++    
Sbjct: 132 KNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LSFFSLAANSLYS 188

Query: 170 VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHK 229
                +    +    + L  +         +  N   +      +++++      +    
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 230 RLGILDISNNNIRGHIPVEI--GDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSN 287
            +       +NI+         G    S+   ++S   +       F  +K L++L+L+ 
Sbjct: 241 HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 288 NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPE 347
           N++  +I +    G  NLQ L LS N L E LY                L  + +I + +
Sbjct: 300 NKIN-KIADEAFYGLDNLQVLNLSYNLLGE-LY----------SSNFYGLPKVAYIDLQK 347

Query: 348 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSY 407
           NH+       F  L  LQ LD+ DN ++    +     SI  + LS N L    K +L+ 
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 408 NLLNGS--------IPDWIGELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSL 458
           NL++ S        I  ++  +  L  LIL  N        Q       L+ L L  N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 459 HGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
             +                                                  LS L  L
Sbjct: 464 QLAWETELCWDVFEG--------------------------------------LSHLQVL 485

Query: 519 YLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           YL+ N  +  +PP +  +LT ++ L+L+ N LT L  +      ++E LD+S N+L    
Sbjct: 486 YLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPN 542

Query: 578 PHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI-CRSPATM 636
           P   V L  L        +++        + +TF       N  + G P  I C  P + 
Sbjct: 543 PDVFVSLSVL--------DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSF 594

Query: 637 SEASIGNERDDNLIDMDSF----FITFTTSYVIVIFAIVIILYVNSYWRRRWFYF 687
           S  S+ +   +   + +      F  F    V +   ++ IL V  +    +  +
Sbjct: 595 SGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (341), Expect = 5e-33
 Identities = 84/398 (21%), Positives = 135/398 (33%), Gaps = 62/398 (15%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
           I      N+   +P     VL +     +S N +     SSF  ++ LQLL+L +     
Sbjct: 8   IAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLK-------------EGLYLTNNSLSGNI--PGWLGNL 337
            I +       NL+ L L ++ +                L L    LS  +   G+  NL
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 338 TWLIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL---SIEQVHLS 393
             L  + + +N +    +   F +L SL+ +D S N I         PL   ++    L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 394 KNMLHRQLKRDLSYNLLNGSIPDWIGEL----SQLSHLILG--HNNLEGEVPVQLCELNQ 447
            N L+ ++  D     +N      +  L    +  +  I G   N +       L   + 
Sbjct: 183 ANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 448 LQLLDLSNNSLHGSIPPCFDN------TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501
           +       +++       F          L  S+    SL                F T 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL------------NSRVFET- 288

Query: 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNL 560
                     L  L  L L+ NK I  I  +    L  +Q LNLSYN L  L  S F  L
Sbjct: 289 ----------LKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 561 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
             +  +DL  N +          L+ L+   +  N L+
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 1e-20
 Identities = 62/372 (16%), Positives = 115/372 (30%), Gaps = 75/372 (20%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRD--LEELDIGENKI 58
           +     N+ + +   SL     +       ++++   D   F  L    +  LD+    +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 59  DKFVVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP----- 105
                         K L L        +    F   +NL+VL++SYN +  L        
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 106 ---QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSL 162
                + L  NH  I I  +      +L+    ++N     +T  H +      +  + L
Sbjct: 338 PKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNA----LTTIHFIP----SIPDIFL 388

Query: 163 SSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFW 222
           S +    +       +   L   RL ++ +                              
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV----------------------- 425

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-----FGNM 277
                   L IL ++ N        +     PSL    +  N L  +  +      F  +
Sbjct: 426 ------PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 278 KFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSL 326
             LQ+L L++N L   +P  +      L+ L L++N L            E L ++ N L
Sbjct: 480 SHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538

Query: 327 SGNIPGWLGNLT 338
               P    +L+
Sbjct: 539 LAPNPDVFVSLS 550

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  155 bits (394), Expect = 2e-40
 Identities = 98/603 (16%), Positives = 184/603 (30%), Gaps = 134/603 (22%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LS N   +    S      L+ L+L+   ++ +I+   + SL  L  L +  N I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------- 105
            +         ++L   +T    +L+         L+ L++++N I +  +P        
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 106 -QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS 164
            + L LS N  +  I    L    ++ + +   +     +           +L  L+L +
Sbjct: 151 LEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 165 SYGDGVTFPKFLYHQHDLEYVRLSHIKMNG-----EFPNWLLENNTKLATLFLVNDSLAG 219
           ++         +     LE  RL   +        +F    LE    L         L  
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 220 PFWLPIHSHKRLGIL---DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN 276
                I     L  +    + +  I              L + N                
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLK 323

Query: 277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336
           +K L+ L  ++N+      E   V   +L+FL LS N L                     
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGL--------------------- 359

Query: 337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 395
                         +G          SL+ LD+S N +  ++ S F  L  +E +    +
Sbjct: 360 ------------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 396 MLHRQLKRDLSYNLLNGSIPDWI--GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 453
            L                + ++     L  L +L + H +           L+ L++L +
Sbjct: 407 NLK--------------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 454 SNNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
           + NS   +  P  F                                             L
Sbjct: 453 AGNSFQENFLPDIFTE-------------------------------------------L 469

Query: 513 SLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
             L+ L LS  + +  + P    +L+ +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 470 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 572 KLN 574
             +
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (348), Expect = 2e-34
 Identities = 98/549 (17%), Positives = 180/549 (32%), Gaps = 80/549 (14%)

Query: 86  FNNLEVLDMSYNKIDNLVVP--------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKN 137
             + + LD+S+N + +L           Q L LS    +  I      + S L       
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 138 NQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP 197
           N                  +QSL+                    L+ +      +     
Sbjct: 86  NP-----------------IQSLA-----------LGAFSGLSSLQKLVAVETNLA-SLE 116

Query: 198 NWLLENNTKLATLFLVNDSLA-GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSL 256
           N+ + +   L  L + ++ +          +   L  LD+S+N I+  I      VL  +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 257 YVF----NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312
            +     ++S+N ++   P +F  ++ L  L L NN  +  + +    G   L+   L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG---PIPVEFCQLYSLQILDI 369
              +        +L       L  L  L        +L+     I   F  L ++    +
Sbjct: 235 GEFRN-----EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 370 SDNNISGSLPSCFHPLSIEQVHLSKNMLH-------RQLKR-DLSYNLLNGSIPDWIGEL 421
               I   +    +    + + L             + LKR   + N    +  +   +L
Sbjct: 290 VSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDL 346

Query: 422 SQLSHLILGHNNLE--GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN----TTLYESY 475
             L  L L  N L   G           L+ LDLS N +  ++   F        L   +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 476 NNSSSLDEKFEISFFIEGPQ---GDFTTKNIAYIYQG--KVLSLLSGLYLSCNKLIGHIP 530
           +N   + E    S F+        D +  +    + G    LS L  L ++ N    +  
Sbjct: 406 SNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 531 PQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 589
           P I   L  +  L+LS   L  L P+ F++L  ++ L+++ N+L          L +L+ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 590 FSVAYNNLS 598
             +  N   
Sbjct: 523 IWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (260), Expect = 2e-23
 Identities = 76/397 (19%), Positives = 138/397 (34%), Gaps = 32/397 (8%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLR----SLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK 57
           L+LS N   +   + L  L  +     SL+L+ N +   I    F  +R L +L +  N 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNF 211

Query: 58  IDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI 117
               V+   +          L + EF +  NLE  D S  +    +  +E RL+   + +
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
              ++     + +  F   +  +      S++    + +L +          +   K L 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 178 HQH-------------DLEYVRLSHIKMNG-EFPNWLLENNTKLATLFLVNDSLAGPFWL 223
                            LE++ LS   ++     +      T L  L L  + +      
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283
                ++L  LD  ++N++      +   L +L   +IS      +    F  +  L++L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHI 343
            ++ N         +     NL FL LS   L          LS   P    +L+ L  +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--------EQLS---PTAFNSLSSLQVL 499

Query: 344 IMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS 380
            M  N L+      F +L SLQ + +  N    S P 
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (353), Expect = 3e-35
 Identities = 89/497 (17%), Positives = 163/497 (32%), Gaps = 56/497 (11%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LS N         L   ++L+ L L  + +  +I+   F SL  LE LD+ +N +   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSL 89

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------- 105
             S        K L L    ++       F +  NL+ L +   +  + +          
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 106 -QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN-------AEITESHSLTAPNFQL 157
             EL +     R     + L +   +       ++           ++    L   +  L
Sbjct: 150 LNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 158 QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL------LENNTKLATLF 211
                S    D V+ P              S  ++       L       ++ T      
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 212 LVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIP 271
                      L       +  L I    +  +    +  +L  +    +  + +     
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAV--GCVNLQFLMLSNNSLKEGLYLTNNSLSGN 329
           S   ++K L+ LDLS N +  E  ++ A      +LQ L+LS N L+        S+   
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR--------SMQ-K 378

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 389
               L  L  L  + +  N    P+P        ++ L++S   I   + +C  P ++E 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQTLEV 435

Query: 390 VHLSKNMLHR------QLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442
           + +S N L        +L+   +S N L  ++PD       L  + +  N L+       
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIF 493

Query: 443 CELNQLQLLDLSNNSLH 459
             L  LQ + L  N   
Sbjct: 494 DRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (338), Expect = 2e-33
 Identities = 94/598 (15%), Positives = 193/598 (32%), Gaps = 122/598 (20%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
            +    SF  +I S L   ++++SL+L+ N +   I   +  +  +L+ L +  ++I   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI--- 62

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                          T++   F S  +LE LD+S N + +L        S + F      
Sbjct: 63  --------------NTIEGDAFYSLGSLEHLDLSDNHLSSL--------SSSWFG----- 95

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
                                          P   L+ L+L  +    +       +  +
Sbjct: 96  -------------------------------PLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
           L+ +R+ +++   E         T L  L +   SL       + S + +  L +  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 242 RGHIPVEIGDVLPSL---YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHL 298
              +     D+L S+    + + ++     S          ++ L    + LT E    L
Sbjct: 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 299 AV---GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 355
                  + L  +   + +L        +               +  + +P+ +L   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 356 VEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKR----------- 403
             +  L  ++ + + ++ +     S    L S+E + LS+N++  +  +           
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 404 ---DLSYNLLN--GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
               LS N L       + +  L  L+ L +  N     +P       +++ L+LS+  +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 459 HGSIPPC-FDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
              +  C       L  S NN  S                               L  L 
Sbjct: 423 R-VVKTCIPQTLEVLDVSNNNLDSFSLF---------------------------LPRLQ 454

Query: 517 GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
            LY+S NKL   +P        +  + +S N L  +    F  L  ++ + L  N  +
Sbjct: 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 1e-32
 Identities = 66/387 (17%), Positives = 129/387 (33%), Gaps = 38/387 (9%)

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
            G+ D  + +    IP  +     ++   ++S N +             LQ+L L ++++
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 350
              I         +L+ L LS+N L         SLS     W G L+ L ++ +  N  
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLS--------SLS---SSWFGPLSSLKYLNLMGNPY 110

Query: 351 -EGPIPVEFCQLYSLQILDISDNNISGSLP-SCFHPL-SIEQVHLSKNMLH--------- 398
               +   F  L +LQ L I +      +    F  L S+ ++ +    L          
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 399 -RQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456
            R +    L  +     +  +   LS + +L L   NL       L        +     
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
                    F+       Y    S   + E         GDF       + +   +  ++
Sbjct: 231 RGSVLTDESFNELLKLLRYILELS---EVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 517 --GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
              L++    L   +      L +++ + +  + +  +  S   +LK +E LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 575 GKIPHQLVE---LKTLEVFSVAYNNLS 598
            +            +L+   ++ N+L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 3e-29
 Identities = 79/453 (17%), Positives = 149/453 (32%), Gaps = 49/453 (10%)

Query: 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVND 215
            LQ L L SS  + +      Y    LE++ LS   ++    +      + L  L L+ +
Sbjct: 51  NLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGN 108

Query: 216 SLAG-PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF 274
                       +   L  L I N      I       L SL    I   +L      S 
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 275 GNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL 334
            +++ +  L L  ++    + E  A    ++++L L + +L        + L  +     
Sbjct: 169 KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR---FQFSPLPVDEVSSP 224

Query: 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 394
                    ++ +      +      +  L  ++  D  ++G     F+P   + V    
Sbjct: 225 MKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNGLG--DFNPSESDVVSELG 281

Query: 395 NMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLD 452
            +    ++R  +    L   +      L ++  + + ++ +   VP    + L  L+ LD
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340

Query: 453 LSNNSLHGSIPP---CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAY 505
           LS N +         C        TL  S N+  S+ +                T     
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK----------TGEILLT----- 385

Query: 506 IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIES 565
                 L  L+ L +S N     +P       +++ LNLS   +  +       L+    
Sbjct: 386 ------LKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV--- 435

Query: 566 LDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           LD+S N L+      L  L+ L    ++ N L 
Sbjct: 436 LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 27/201 (13%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           DLS+N +       +   + L  LIL  + +          L  L+ LDLS+N L     
Sbjct: 32  DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91

Query: 464 PCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
             F        L    N   +L                              L+ L  L 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPN----------------------LTNLQTLR 129

Query: 520 LSCNKLIGHIPPQ-IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
           +   +    I       LT +  L +   +L      +  +++ I  L L  ++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 579 HQLVELKTLEVFSVAYNNLSG 599
                L ++    +   NL+ 
Sbjct: 190 IFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 8e-13
 Identities = 46/315 (14%), Positives = 95/315 (30%), Gaps = 71/315 (22%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           + + + +  +           ++R L++    L        +  L  ++ + +  +K+  
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 120
                            +         +LE LD+S N +    +                
Sbjct: 324 ----------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG--------- 358

Query: 121 LEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQH 180
                    L+      N +   + ++  +      L SL +S +       P       
Sbjct: 359 -----AWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNT--FHPMPDSCQWPE 410

Query: 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN 240
            + ++ LS                T +  +                  + L +LD+SNNN
Sbjct: 411 KMRFLNLSS---------------TGIRVVK------TCIP-------QTLEVLDVSNNN 442

Query: 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV 300
           +           LP L    IS N L  ++P +      L ++ +S NQL   +P+ +  
Sbjct: 443 LD-----SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFD 494

Query: 301 GCVNLQFLMLSNNSL 315
              +LQ + L  N  
Sbjct: 495 RLTSLQKIWLHTNPW 509

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (334), Expect = 3e-34
 Identities = 53/374 (14%), Positives = 96/374 (25%), Gaps = 71/374 (18%)

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284
            H       L    +         +       Y  + +             N    Q+  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------EGLYLTNNSLSGNIPG 332
            +   L                 L L +  L             + + +    L   +P 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL 392
            +     L  + +  N L   +P     L  L+ L I        LP       +     
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDA 175

Query: 393 SKNMLH-RQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL 450
           S        L+   L +  +  S+P  I  L  L  L + ++ L   +   +  L +L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 451 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGK 510
           LDL   +   + PP F                                            
Sbjct: 234 LDLRGCTALRNYPPIFGG------------------------------------------ 251

Query: 511 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
             + L  L L     +  +P  I  LT+++ L+L        +PS  + L     + +  
Sbjct: 252 -RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 571 NKLNGKIPHQLVEL 584
           +       H+ V  
Sbjct: 311 HLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (294), Expect = 6e-29
 Identities = 58/305 (19%), Positives = 100/305 (32%), Gaps = 30/305 (9%)

Query: 186 RLSHIKMNGEFPNWLLENNTKLATLFLVNDSL-AGPFWLPIHSHKRLGILDISNNNIRGH 244
           R  +   N     W   N+           +L A    L   +      L++ +  +   
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 245 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 304
            P +    L  L    I    L   +P +      L+ L L+ N L   +P  +A     
Sbjct: 96  FPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNR 151

Query: 305 LQFLMLS-NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 363
           L+ L +     L E   L     S +  G    L  L  + +    +   +P     L +
Sbjct: 152 LRELSIRACPELTE---LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQN 207

Query: 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELS 422
           L+ L I ++ +S +L    H L              +L+  DL       + P   G  +
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLP-------------KLEELDLRGCTALRNYPPIFGGRA 253

Query: 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN----TTLYESYNNS 478
            L  LIL   +    +P+ +  L QL+ LDL        +P           +    +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 479 SSLDE 483
           + LD+
Sbjct: 314 AQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 2e-26
 Identities = 49/333 (14%), Positives = 94/333 (28%), Gaps = 50/333 (15%)

Query: 268 GSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLS 327
           GS      +    + L    +       + L+      Q    ++ +             
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRWH---------- 47

Query: 328 GNIPGWLGNLTWLIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 386
                   N             L+     +E         L++    +    P     LS
Sbjct: 48  --SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 387 IEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL 445
                         L+   +    L   +PD + + + L  L L  N L   +P  +  L
Sbjct: 105 -------------HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 446 NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISF--FIEGPQGDFTTKNI 503
           N+L+ L +        +P    +T     +    +L +   + +      P       +I
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNL-QSLRLEWTGIRSLP------ASI 202

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHI 563
           A       L  L  L +  + L   + P I +L +++ L+L         P  F     +
Sbjct: 203 AN------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 564 ESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 596
           + L L        +P  +  L  LE   +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 55/382 (14%), Positives = 105/382 (27%), Gaps = 88/382 (23%)

Query: 16  SLTHLSSLRSLNLNG-NSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVS-------KEL 67
              H S   +L   G  +L         D L   +     +                +  
Sbjct: 7   HHHHSSGRENLYFQGSTALR-----PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 68  YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---------QELRLSDNHFR-I 117
                  K T D+ E  +      L++    +     P         Q + +       +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLMEL 119

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
           P +++       L+      N                  L++L            P  + 
Sbjct: 120 PDTMQQFAG---LETLTLARN-----------------PLRAL------------PASIA 147

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237
             + L  + +       E P  L   +       LVN                L  L + 
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----------------LQSLRLE 191

Query: 238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
              IR  +P  I + L +L    I  + L  ++  +  ++  L+ LDL         P  
Sbjct: 192 WTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 298 LAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE 357
              G   L+ L+L +           ++L   +P  +  LT L  + +        +P  
Sbjct: 249 FG-GRAPLKRLILKD----------CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 358 FCQLYSLQILDISDNNISGSLP 379
             QL +  I+ +  +  +    
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 34/255 (13%), Positives = 69/255 (27%), Gaps = 67/255 (26%)

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNM--------LHRQLKRDLSYNLLNGSI 414
             + L    +                                 +       +   L  + 
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-AT 71

Query: 415 PDWIGELSQ--LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY 472
            D + + +Q     L L    L  + P Q   L+ LQ + +    L   +P         
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ---- 125

Query: 473 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ 532
                                                   + L  L L+ N L   +P  
Sbjct: 126 ---------------------------------------FAGLETLTLARNPLR-ALPAS 145

Query: 533 IGNLTRIQTLNLSYNNLTGLIPSTFSN---------LKHIESLDLSYNKLNGKIPHQLVE 583
           I +L R++ L++        +P   ++         L +++SL L +  +   +P  +  
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 584 LKTLEVFSVAYNNLS 598
           L+ L+   +  + LS
Sbjct: 205 LQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 42/317 (13%), Positives = 92/317 (29%), Gaps = 57/317 (17%)

Query: 11  NTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLD 70
                   + ++ +     G +L+ + D+ E  +      L++    + +F         
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF--------- 96

Query: 71  DTGFKGTLDIREFDSFNNLEVLDMSYNK-------IDNLVVPQELRLSDNHFR-IPISLE 122
                      +    ++L+ + +           +      + L L+ N  R +P S+ 
Sbjct: 97  ---------PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147

Query: 123 PLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDL 182
            L     L I      ++                     L                  +L
Sbjct: 148 SLNRLRELSIRA--CPELT-------------------ELPEPLAS-TDASGEHQGLVNL 185

Query: 183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP--IHSHKRLGILDISNNN 240
           + +RL    +    P   + N   L +L + N  L+    L   IH   +L  LD+    
Sbjct: 186 QSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCT 240

Query: 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV 300
              + P   G     L    +   +   ++P     +  L+ LDL        +P  +A 
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA- 298

Query: 301 GCVNLQFLMLSNNSLKE 317
                  +++  +   +
Sbjct: 299 QLPANCIILVPPHLQAQ 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 2e-33
 Identities = 69/359 (19%), Positives = 123/359 (34%), Gaps = 58/359 (16%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282
           +P        +LD+  N I+  +  +     P L    ++ N +    P +F N+  L+ 
Sbjct: 26  VPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
           L L +N+L   IP  +  G  NL  L +S N +          L         +L  L  
Sbjct: 85  LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI--------VILL---DYMFQDLYNLKS 132

Query: 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQL 401
           + + +N L       F  L SL+ L +   N++         L  +  + L    ++   
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-- 190

Query: 402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
              +               L +L  L + H      +         L  L +++ +L  +
Sbjct: 191 ---IRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-A 238

Query: 462 IPPC-FDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
           +P     +      L  SYN  S++                              L  L 
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTI------------EGSMLHE-----------LLRLQ 275

Query: 517 GLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
            + L   + +  + P     L  ++ LN+S N LT L  S F ++ ++E+L L  N L 
Sbjct: 276 EIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 5e-26
 Identities = 64/367 (17%), Positives = 116/367 (31%), Gaps = 97/367 (26%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
            +          +P  I        + ++  N +       F +   L+ L+L+ N ++ 
Sbjct: 15  AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
            +         NL+ L L +N LK                            +P     G
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKL---------------------------IPLGVFTG 102

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLN 411
                   L +L  LDIS+N I   L   F  L +++ + +  N L       +S+   +
Sbjct: 103 --------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-----VYISHRAFS 149

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTL 471
           G        L+ L  L L   NL       L  L+ L +L L + +++      F     
Sbjct: 150 G--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--- 198

Query: 472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP 531
                                                   L  L  L +S    +  + P
Sbjct: 199 ----------------------------------------LYRLKVLEISHWPYLDTMTP 218

Query: 532 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 591
                  + +L++++ NLT +      +L ++  L+LSYN ++      L EL  L+   
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 592 VAYNNLS 598
           +    L+
Sbjct: 279 LVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 73/399 (18%), Positives = 137/399 (34%), Gaps = 118/399 (29%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           +  R L+L  N ++ +++  EF S   LEEL++ EN +                   ++ 
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-----------------AVEP 73

Query: 81  REFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEP-LFNH-SRL 130
             F++  NL  L +  N++          L    +L +S+N       L   +F     L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNL 130

Query: 131 KIFHAKNNQMNAEITESHSLTAPNFQ----LQSLSLSSSYGDGVTFPKFLYHQHDLEYVR 186
           K     +N +         ++   F     L+ L+L                        
Sbjct: 131 KSLEVGDNDL-------VYISHRAFSGLNSLEQLTLEKC--------------------N 163

Query: 187 LSHIKMNGEFPNWLLENNTKLATLFLVNDSL----AGPF-WLPIHSHKRLGILDISNNNI 241
           L+ I      P   L +   L  L L + ++       F  L      RL +L+IS+   
Sbjct: 164 LTSI------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-----RLKVLEISHWPY 212

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAV 300
              +       L +L   +I+   L  ++P  +  ++ +L+ L+LS N ++  I   +  
Sbjct: 213 LDTMTPNCLYGL-NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH 269

Query: 301 GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ 360
             + LQ + L    L     +   +  G                                
Sbjct: 270 ELLRLQEIQLVGGQLAV---VEPYAFRG-------------------------------- 294

Query: 361 LYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLH 398
           L  L++L++S N ++    S FH + ++E + L  N L 
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 61/324 (18%), Positives = 106/324 (32%), Gaps = 86/324 (26%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L L  N      L   T LS+L  L+++ N +   +    F  L +L+ L++G+N +   
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL--- 140

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELRLSDN 113
                           +  R F   N+LE L +    + ++             LRL   
Sbjct: 141 --------------VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 114 HFRI--PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVT 171
           +       S + L+    L+I H         +            L SLS++        
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISH--WPY----LDTMTPNCLYGLNLTSLSITHC------ 234

Query: 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231
                          L+ +      P   + +   L                        
Sbjct: 235 --------------NLTAV------PYLAVRHLVYLRF---------------------- 252

Query: 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 291
             L++S N I   I   +   L  L    +    L    P +F  + +L++L++S NQLT
Sbjct: 253 --LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSL 315
             + E +     NL+ L+L +N L
Sbjct: 310 -TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 42/243 (17%), Positives = 79/243 (32%), Gaps = 63/243 (25%)

Query: 363 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
             ++LD+  N I       F     +E++ L++N++       +     N         L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-----SAVEPGAFNN--------L 79

Query: 422 SQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIPP-CFDNTTLYESYNNSS 479
             L  L L  N L+  +P+ +   L+ L  LD+S N +   +    F +           
Sbjct: 80  FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQD----------- 126

Query: 480 SLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTR 538
                                           L  L  L +  N  + +I  +    L  
Sbjct: 127 --------------------------------LYNLKSLEVGDND-LVYISHRAFSGLNS 153

Query: 539 IQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           ++ L L   NLT +     S+L  +  L L +  +N    +    L  L+V  +++    
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 599 GEI 601
             +
Sbjct: 214 DTM 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (329), Expect = 2e-33
 Identities = 69/386 (17%), Positives = 130/386 (33%), Gaps = 77/386 (19%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
                  +   ++   +  E    L S+    ++   +  +       +  L+ L+L+ N
Sbjct: 22  AEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGN 76

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNL 337
           Q+T   P       V L  L +  N +              LYL  +++S   P  L NL
Sbjct: 77  QITDISP---LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANL 131

Query: 338 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 397
           T +  + +  NH    +      +  L  L ++++ +    P     L+           
Sbjct: 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLT----------- 177

Query: 398 HRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456
              L    L+YN +    P  +  L+ L +     N +    P  +  + +L  L + NN
Sbjct: 178 --DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 457 SLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
            +    P    N    T L    N  S ++        ++                   L
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINA-------VKD------------------L 264

Query: 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
           + L  L +  N+ I  I   + NL+++ +L L+ N L          L ++ +L LS N 
Sbjct: 265 TKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 573 LNGKIPHQLVELKTLEVFSVAYNNLS 598
           +    P  L  L  ++    A   + 
Sbjct: 323 ITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 5e-26
 Identities = 69/373 (18%), Positives = 136/373 (36%), Gaps = 50/373 (13%)

Query: 106 QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSS 165
             L            + P  + +       +   +   +T+   L      +  L ++  
Sbjct: 3   ATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEE-LE----SITKLVVAGE 54

Query: 166 YGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPI 225
               V   + + +  +LEY+ L+  ++    P   L N  KL  L++  + +       +
Sbjct: 55  ---KVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SAL 106

Query: 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285
            +   L  L ++ +NI    P+     L  +Y  N+  N    S  S   NM  L  L +
Sbjct: 107 QNLTNLRELYLNEDNISDISPLAN---LTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTV 162

Query: 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWL 334
           + +++    P  +A    +L  L L+ N ++                  N ++   P  +
Sbjct: 163 TESKVKDVTP--IA-NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--V 217

Query: 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 394
            N+T L  + +  N +    P     L  L  L+I  N IS  + +      ++ +++  
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGS 274

Query: 395 NMLH--------RQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL 445
           N +          QL    L+ N L     + IG L+ L+ L L  N++    P  L  L
Sbjct: 275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

Query: 446 NQLQLLDLSNNSL 458
           +++   D +N  +
Sbjct: 333 SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 4e-24
 Identities = 84/380 (22%), Positives = 139/380 (36%), Gaps = 88/380 (23%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L ++G    +  +  + +L++L  LNLNGN +    D+    +L  L  L IG NKI   
Sbjct: 49  LVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-- 101

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHF 115
                            DI    +  NL  L ++ + I       NL     L L  NH 
Sbjct: 102 -----------------DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHN 144

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKF 175
              +S  PL N + L       +++  ++T   +LT     L SLSL+ +          
Sbjct: 145 LSDLS--PLSNMTGLNYLTVTESKVK-DVTPIANLT----DLYSLSLNYN---------- 187

Query: 176 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 235
                     ++  I          L + T L       + +      P+ +  RL  L 
Sbjct: 188 ----------QIEDISP--------LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLK 227

Query: 236 ISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
           I NN I    P+     L  L    I  N +  S  ++  ++  L++L++ +NQ++    
Sbjct: 228 IGNNKITDLSPLAN---LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISV 282

Query: 296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 355
                         L+N S    L+L NN L       +G LT L  + + +NH+    P
Sbjct: 283 --------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 356 VEFCQLYSLQILDISDNNIS 375
                L  +   D ++  I 
Sbjct: 329 --LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 4e-24
 Identities = 54/340 (15%), Positives = 117/340 (34%), Gaps = 88/340 (25%)

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLY 320
               ++       L    +T  + +       ++  L+++   +            E L 
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVASIQGIEYLTNLEYLN 72

Query: 321 LTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS 380
           L  N ++   P  L NL  L ++ +  N +          L +L+ L ++++NIS    S
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISD--IS 126

Query: 381 CFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 439
               L+             ++   +L  N    S    +  ++ L++L +  + ++   P
Sbjct: 127 PLANLT-------------KMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 440 VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499
             +  L  L  L L+ N +    P    +                               
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISP--LAS------------------------------- 197

Query: 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
                       L+ L       N++    P  + N+TR+ +L +  N +T L P   +N
Sbjct: 198 ------------LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
           L  +  L++  N+++    + + +L  L++ +V  N +S 
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.8 bits (242), Expect = 5e-22
 Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 52/293 (17%)

Query: 319 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378
           L      ++   P    +L   I  ++ +  +   +  E  +L S+  L ++   ++ S+
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA-SI 59

Query: 379 PSCFHPLSIEQVHLSKNMLH--------RQLKR-DLSYNLLNGSIPDWIGELSQLSHLIL 429
               +  ++E ++L+ N +          +L    +  N +  +    +  L+ L  L L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYL 117

Query: 430 GHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT---TLYESYNNSSSLDEKFE 486
             +N+    P  L  L ++  L+L  N     + P  + T    L  + +    +     
Sbjct: 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 487 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY 546
               I                    L+ L  L L+ N++    P  + +LT +       
Sbjct: 173 ----IAN------------------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208

Query: 547 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
           N +T + P   +N+  + SL +  NK+    P  L  L  L    +  N +S 
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 3e-20
 Identities = 61/323 (18%), Positives = 118/323 (36%), Gaps = 75/323 (23%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L +  N    T +S+L +L++LR L LN +++    D+    +L  +  L++G N     
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHN--- 144

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHF 115
                            D+    +   L  L ++ +K+       NL     L L+ N  
Sbjct: 145 ---------------LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI 189

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKF 175
                + PL + + L  F A  NQ+  +IT   ++T    +L SL + ++          
Sbjct: 190 E---DISPLASLTSLHYFTAYVNQIT-DITPVANMT----RLNSLKIGNN---------- 231

Query: 176 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 235
                     +++ +          L N ++L  L +  + ++      +    +L +L+
Sbjct: 232 ----------KITDLS--------PLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLN 271

Query: 236 ISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
           + +N I     +     L  L    ++ N L        G +  L  L LS N +T   P
Sbjct: 272 VGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 296 -EHLAVGCVNLQFLMLSNNSLKE 317
              L      +     +N  +K+
Sbjct: 329 LASL----SKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 50/249 (20%)

Query: 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH--------RQLKR-DLSYNLLNGSI 414
              L      I+  +          +  L K  +           + +  ++   +  SI
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SI 59

Query: 415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN----TT 470
              I  L+ L +L L  N +    P  L  L +L  L +  N +  +      N      
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP 530
           LY + +N S +         +                    L+ +  L L  N  +  + 
Sbjct: 115 LYLNEDNISDISP-------LAN------------------LTKMYSLNLGANHNLSDLS 149

Query: 531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 590
           P + N+T +  L ++ + +  + P   +NL  + SL L+YN++    P  L  L +L  F
Sbjct: 150 P-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204

Query: 591 SVAYNNLSG 599
           +   N ++ 
Sbjct: 205 TAYVNQITD 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 4e-32
 Identities = 82/357 (22%), Positives = 133/357 (37%), Gaps = 60/357 (16%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
               I+   N+ +R  +P  + D    + + N++   ++     +F     +Q L +  N
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
            +   +P H+      L  L+L  N L         SL   I     N   L  + M  N
Sbjct: 104 AIR-YLPPHVFQNVPLLTVLVLERNDLS--------SLPRGI---FHNTPKLTTLSMSNN 151

Query: 349 HLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML-----HRQLK 402
           +LE  I  + F    SLQ L +S N ++    S    L     ++S N+L        ++
Sbjct: 152 NLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSYNLLSTLAIPIAVE 208

Query: 403 R-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
             D S+N +N  +        +L+ L L HNNL  +    L     L  +DLS N L   
Sbjct: 209 ELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKI 263

Query: 462 IPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
           +   F        LY S N   +L+                           + +  L  
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYG------------------------QPIPTLKV 299

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           L LS N  + H+        R++ L L +N++  L  ST   LK+   L LS+N  +
Sbjct: 300 LDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 4e-29
 Identities = 64/364 (17%), Positives = 127/364 (34%), Gaps = 68/364 (18%)

Query: 252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311
                Y  +I M   D         +   +++   N+ +  ++P  L      ++ L L+
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 312 NNSLK-------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE- 357
           +  ++             + LY+  N++    P    N+  L  +++  N L   +P   
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI 136

Query: 358 FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 416
           F     L  L +S+NN+       F    S++ + LS N L                +  
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT--------------HVDL 182

Query: 417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN-TTLYESY 475
               +  L H  + +N L       L     ++ LD S+NS++    P     T L   +
Sbjct: 183 --SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235

Query: 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-G 534
           NN +      + ++ +                       L  + LS N+ +  I      
Sbjct: 236 NNLT------DTAWLLN-------------------YPGLVEVDLSYNE-LEKIMYHPFV 269

Query: 535 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 594
            + R++ L +S N L   +      +  ++ LDLS+N L   +     +   LE   + +
Sbjct: 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 595 NNLS 598
           N++ 
Sbjct: 328 NSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 1e-24
 Identities = 79/424 (18%), Positives = 146/424 (34%), Gaps = 88/424 (20%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           +++   + +         L++ + +    +++   +     DS R +E L++ + +I+  
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-- 82

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDN 113
                           +D   F   + ++ L M +N I         N+ +   L L  N
Sbjct: 83  ---------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 114 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLT-APNFQLQSLSLSSSYGDGVTF 172
                +      N  +L      NN     +      T      LQ+L LSS+       
Sbjct: 128 DLSS-LPRGIFHNTPKLTTLSMSNNN----LERIEDDTFQATTSLQNLQLSSN------- 175

Query: 173 PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLG 232
                        RL+H+ ++   P+        L    +  + L+      +     + 
Sbjct: 176 -------------RLTHVDLSL-IPS--------LFHANVSYNLLST-----LAIPIAVE 208

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
            LD S+N+I   +    G V   L +  +  N L  +  +   N   L  +DLS N+L  
Sbjct: 209 ELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE- 261

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
           +I  H  V    L+ L +SNN L              +  +   +  L  + +  NHL  
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV------------ALNLYGQPIPTLKVLDLSHNHLLH 309

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412
            +     Q   L+ L +  N+I     S  H L  + + LS N       R L  N+   
Sbjct: 310 -VERNQPQFDRLENLYLDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARP 366

Query: 413 SIPD 416
           ++ D
Sbjct: 367 AVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 54/318 (16%), Positives = 102/318 (32%), Gaps = 90/318 (28%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L L  N  ++       +   L +L+++ N+LE  I+   F +   L+ L +  N++  
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---QELRLSDNHFRI 117
                                +     +L   ++SYN +  L +P   +EL  S N    
Sbjct: 180 V--------------------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 218

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
              +    N   L I   ++N     +T++  L      L  + LS +            
Sbjct: 219 --VVRGPVN-VELTILKLQHNN----LTDTAWL-LNYPGLVEVDLSYN------------ 258

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237
                    L  I               +L  L++                        S
Sbjct: 259 --------ELEKI------MYHPFVKMQRLERLYI------------------------S 280

Query: 238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
           NN +   + +     +P+L V ++S N L   +  +      L+ L L +N +   +   
Sbjct: 281 NNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 336

Query: 298 LAVGCVNLQFLMLSNNSL 315
                  L+ L LS+N  
Sbjct: 337 T---HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 53/275 (19%), Positives = 90/275 (32%), Gaps = 54/275 (19%)

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 389
           I   L        + +     +     E   L + +I+   ++ +     +         
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF---- 68

Query: 390 VHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
                    RQ++  +L+   +             +  L +G N +    P     +  L
Sbjct: 69  ---------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 449 QLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503
            +L L  N L  S+P   F N    TTL  S NN   +                F     
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI------------EDDTFQA--- 163

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHI 563
                    + L  L LS N+ + H+      +  +   N+SYN L+     T +    +
Sbjct: 164 --------TTSLQNLQLSSNR-LTHVDL--SLIPSLFHANVSYNLLS-----TLAIPIAV 207

Query: 564 ESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           E LD S+N +N       VEL  L    + +NNL+
Sbjct: 208 EELDASHNSINVVRGPVNVELTIL---KLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN--- 468
            I   +        + +     +     +   LN  +++   N+++   +P    D+   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 469 -TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
              L  +      +                F                +  LY+  N  I 
Sbjct: 71  VELLNLNDLQIEEI------------DTYAFAY-----------AHTIQKLYMGFNA-IR 106

Query: 528 HIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 586
           ++PP +  N+  +  L L  N+L+ L    F N   + +L +S N L            +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 587 LEVFSVAYNNLS 598
           L+   ++ N L+
Sbjct: 167 LQNLQLSSNRLT 178

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 3e-31
 Identities = 96/485 (19%), Positives = 167/485 (34%), Gaps = 56/485 (11%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           LN+S N  +    S +  LS LR L ++ N ++  +D+  F   ++LE LD+  NK+   
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 59  --DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQEL 108
                V  K L L    F      +EF + + L+ L +S   +         +L + + L
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 109 RLSDNHFRIPISLEPLFN--HSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSY 166
            +    +      E L +     L I    N + +  I +    T  N +L ++      
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF-ILDVSVKTVANLELSNIKCVLED 203

Query: 167 GDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLE-----NNTKLATLFLVNDSLAGPF 221
                F   L        +    +       N  +       +T +    + N  L G  
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 222 WLPI-----HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN 276
                     S K L I  + ++         I ++  ++ + N +++            
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336
           +     LD SNN LT +           L+ L+L  N LK         LS  I      
Sbjct: 323 ISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK--------ELS-KIAEMTTQ 372

Query: 337 LTWLIHIIMPENHLEGPIPVEFC-QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
           +  L  + + +N +        C    SL  L++S N ++ ++  C  P           
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP----------- 421

Query: 396 MLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 454
               ++K  DL  N +  SIP  + +L  L  L +  N L+         L  LQ + L 
Sbjct: 422 ----RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 455 NNSLH 459
            N   
Sbjct: 477 TNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 67/385 (17%), Positives = 127/385 (32%), Gaps = 41/385 (10%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
           IL+IS N I   +       L  L +  IS N +     S F   + L+ LDLS+N+L  
Sbjct: 25  ILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLK--------------EGLYLTNNSLSGNIPGWLGNLT 338
                     VNL+ L LS N+                + L L+   L  +    + +L 
Sbjct: 84  ISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 339 WL-IHIIMPENHLEGPIPVEFCQLY--SLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
              + +++ E + E   P         SL I+  ++      L      ++  ++   K 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 396 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
           +L           L        +  L+  +     ++ +     V    +    + ++  
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 515
                     +  T+L     +    D      F        F+  NI            
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDV---FGFPQSYIYEIFSNMNI------------ 304

Query: 516 SGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN- 574
                + +            ++    L+ S N LT  +     +L  +E+L L  N+L  
Sbjct: 305 --KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 575 -GKIPHQLVELKTLEVFSVAYNNLS 598
             KI     ++K+L+   ++ N++S
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVS 387

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 63/427 (14%), Positives = 129/427 (30%), Gaps = 47/427 (11%)

Query: 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN 240
            L  + +SH ++       + + N +L  L L ++ L     +  H    L  LD+S N 
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA 101

Query: 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL-LDLSNNQLTGEIPEHLA 299
                  +    +  L    +S   L+ S      ++   ++ L L       E PE L 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 300 -VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEF 358
                +L  +  +N      L ++  +++      +  +          + L        
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 359 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418
               +L  ++ + N+    +       ++    +S   L  QL                 
Sbjct: 222 LSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS------ 274

Query: 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN----TTLYES 474
             L  LS   +  +             + + + + + +        C         L  S
Sbjct: 275 --LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 475 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL--IGHIPPQ 532
            N  +                 +              L+ L  L L  N+L  +  I   
Sbjct: 333 NNLLTDT------------VFENCGH-----------LTELETLILQMNQLKELSKIAEM 369

Query: 533 IGNLTRIQTLNLSYNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 591
              +  +Q L++S N+++        S  K + SL++S N L   I   L     ++V  
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 592 VAYNNLS 598
           +  N + 
Sbjct: 428 LHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 33/159 (20%), Positives = 49/159 (30%), Gaps = 31/159 (19%)

Query: 448 LQLLDLSNNSLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503
             +L++S N +         +      L  S+N    LD               F     
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------------SVF----- 65

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGL-IPSTFSNLKH 562
                 K    L  L LS NKL   I         ++ L+LS+N    L I   F N+  
Sbjct: 66  ------KFNQELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 563 IESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
           ++ L LS   L       +  L   +V  V       + 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 26/182 (14%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI-- 58
           +  +  + F           S++   N   +     + +     +     LD   N +  
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 59  ------DKFVVSKELYLDDTGFKG-TLDIREFDSFNNLEVLDMSYNKI---------DNL 102
                       + L L     K  +          +L+ LD+S N +            
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 103 VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSL 162
                L +S N   +  ++        +K+    +N++ +   +   L      LQ L++
Sbjct: 399 KSLLSLNMSSN--ILTDTIFRCLPPR-IKVLDLHSNKIKSIPKQVVKLE----ALQELNV 451

Query: 163 SS 164
           +S
Sbjct: 452 AS 453

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 523 NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 582
              + H+P  +    +   LN+S N ++ L  S   +L  +  L +S+N++         
Sbjct: 9   KNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK 66

Query: 583 ELKTLEVFSVAYNNLS 598
             + LE   +++N L 
Sbjct: 67  FNQELEYLDLSHNKLV 82

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (319), Expect = 1e-30
 Identities = 73/351 (20%), Positives = 125/351 (35%), Gaps = 81/351 (23%)

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
             +L++  + +   +P  +   + +L + +   N L  S+P+       L+ L++S NQL
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAHITTLVIPD---NNLT-SLPALPPE---LRTLEVSGNQL 93

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLKE------GLYLTNNSLSGNIPGWLGNLTWLIHII 344
           T  +P     G + L         L         L++  N L+ ++P     L  L    
Sbjct: 94  T-SLPVLPP-GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGLQELS--- 147

Query: 345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRD 404
           + +N L   +P    +L     L   +N ++ SLP     L             ++L   
Sbjct: 148 VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPMLPSGL-------------QEL--S 187

Query: 405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP 464
           +S N L  S+P       +L  L   +N L   +P        L+ L +S N L  S+P 
Sbjct: 188 VSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRL-TSLPV 238

Query: 465 CFDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523
                  L  S N  +SL                             + S L  L +  N
Sbjct: 239 LPSELKELMVSGNRLTSLPM---------------------------LPSGLLSLSVYRN 271

Query: 524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           +L   +P  + +L+   T+NL  N L+     T   L+ I S       + 
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSER---TLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 1e-23
 Identities = 69/316 (21%), Positives = 118/316 (37%), Gaps = 56/316 (17%)

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
              + +    +    P+ L  +   + TL + +++L     LP      L  L++S N +
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLTS---LP-ALPPELRTLEVSGNQL 93

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 301
              +PV     L  L +F+  +  L             L  L +  NQLT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 302 CVNLQFLMLSNNSLKE---------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
              LQ L +S+N L            L+  NN L+ ++P     L  L    + +N L  
Sbjct: 142 --GLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLAS 195

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR------QLKR-DL 405
            +P    +L     L   +N ++ SLP+   P  ++++ +S N L        +LK   +
Sbjct: 196 -LPTLPSEL---YKLWAYNNRLT-SLPA--LPSGLKELIVSGNRLTSLPVLPSELKELMV 248

Query: 406 SYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465
           S N L  S+P        L  L +  N L   +P  L  L+    ++L  N L  S    
Sbjct: 249 SGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL--SERTL 301

Query: 466 FDNTTLYESYNNSSSL 481
                +  +   S  +
Sbjct: 302 QALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 63/320 (19%), Positives = 97/320 (30%), Gaps = 108/320 (33%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
             +L++  + LT  +P+ L     ++  L++ +N+L              +P     L  
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS------------LPALPPELRT 85

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
           L    +  N L   +PV    L  L I      ++                         
Sbjct: 86  LE---VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG------------------- 122

Query: 400 QLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
            L +  +  N L  S+P        L  L +  N L   +P       +L  L   NN L
Sbjct: 123 -LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQL 173

Query: 459 HGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
             S+P                                                   L  L
Sbjct: 174 T-SLPMLPSG----------------------------------------------LQEL 186

Query: 519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
            +S N+L   +P     L +   L    N LT L P+  S LK    L +S N+L   +P
Sbjct: 187 SVSDNQLA-SLPTLPSELYK---LWAYNNRLTSL-PALPSGLK---ELIVSGNRLTS-LP 237

Query: 579 HQLVELKTLEVFSVAYNNLS 598
               ELK L    V+ N L+
Sbjct: 238 VLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.6 bits (235), Expect = 3e-20
 Identities = 56/260 (21%), Positives = 89/260 (34%), Gaps = 58/260 (22%)

Query: 347 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR------Q 400
                    +  C      +L++ ++ ++ +LP C  P  I  + +  N L        +
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNLTSLPALPPE 82

Query: 401 LKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
           L+  ++S N L  S+P     L +LS       +L           + L  L +  N L 
Sbjct: 83  LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT 134

Query: 460 GSIPPCFDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
            S+P        L  S N  +SL                             + S L  L
Sbjct: 135 -SLPVLPPGLQELSVSDNQLASLPA---------------------------LPSELCKL 166

Query: 519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
           +   N+L   +P     L   Q L++S N L  L P+  S L     L    N+L   +P
Sbjct: 167 WAYNNQLT-SLPMLPSGL---QELSVSDNQLASL-PTLPSEL---YKLWAYNNRLT-SLP 217

Query: 579 HQLVELKTLEVFSVAYNNLS 598
                LK L    V+ N L+
Sbjct: 218 ALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 75/391 (19%), Positives = 122/391 (31%), Gaps = 91/391 (23%)

Query: 87  NNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITE 146
           N   VL++  + +  L  P  L                  H  +      +N +      
Sbjct: 40  NGNAVLNVGESGLTTL--PDCL----------------PAH--ITTLVIPDNNLT----- 74

Query: 147 SHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK 206
             SL A   +L++L +S +     + P       +L                 L    + 
Sbjct: 75  --SLPALPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPL--------THLPALPSG 122

Query: 207 LATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNAL 266
           L  L++  + L     LP      L  L +S+N +   +P    + L  L+ +N   N L
Sbjct: 123 LCKLWIFGNQLTS---LP-VLPPGLQELSVSDNQLA-SLPALPSE-LCKLWAYN---NQL 173

Query: 267 DGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSL 326
             S+P        LQ L +S+NQL   +P   +     L  L   NN L           
Sbjct: 174 T-SLPMLPSG---LQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLTS--------- 215

Query: 327 SGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 386
              +P     L  LI   +  N L   +PV   +L   + L +S N ++ SLP     L 
Sbjct: 216 ---LPALPSGLKELI---VSGNRLTS-LPVLPSEL---KELMVSGNRLT-SLPMLPSGL- 263

Query: 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN 446
              + L            +  N L   +P+ +  LS  + + L  N L       L E+ 
Sbjct: 264 ---LSL-----------SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 447 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNN 477
                         +       T        
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 72/439 (16%), Positives = 133/439 (30%), Gaps = 107/439 (24%)

Query: 20  LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLD 79
            +    LN+  + L  ++          +  L I +N +                     
Sbjct: 39  NNGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTSLP----------------- 77

Query: 80  IREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 139
                    L  L++S N++ +L               P+    L     L IF      
Sbjct: 78  ----ALPPELRTLEVSGNQLTSL---------------PVLPPGL---LELSIFSNPLTH 115

Query: 140 MNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW 199
           + A  +    L     QL SL +                   L+ + +S  ++    P  
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPP---------------GLQELSVSDNQLA-SLPAL 159

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
                ++L  L+  N+ L     LP      L  L +S+N +   +P    + L  L+ +
Sbjct: 160 P----SELCKLWAYNNQLTS---LP-MLPSGLQELSVSDNQLA-SLPTLPSE-LYKLWAY 209

Query: 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGL 319
           N  + +L             L+ L +S N+LT  +P   +     L+ LM+S N L    
Sbjct: 210 NNRLTSLPALPSG-------LKELIVSGNRLT-SLPVLPS----ELKELMVSGNRLTS-- 255

Query: 320 YLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP 379
                     +P     L  L    +  N L   +P     L S   +++  N +S    
Sbjct: 256 ----------LPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERT 300

Query: 380 SCFHPLSIEQVHLSKNMLHR--------QLKRDLSYNLLNGSIPDWIGELSQLSHL-ILG 430
                        S  ++          +  R L     +  +P   GE +      + G
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 431 HNNLEGEVPVQLCELNQLQ 449
             +      + L  L++ +
Sbjct: 361 QEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 59/362 (16%), Positives = 110/362 (30%), Gaps = 87/362 (24%)

Query: 2   LNLSGNSFNN---TILSSLTHL--------------SSLRSLNLNGNSLEGSIDVKEFDS 44
           LN+  +        + + +T L                LR+L ++GN L  S+       
Sbjct: 45  LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLP-VLPPG 102

Query: 45  LRDLEELDIGENKIDKFVVS-KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLV 103
           L +L         +        +L++       +L          L+ L +S N++ +L 
Sbjct: 103 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLP----VLPPGLQELSVSDNQLASLP 157

Query: 104 VP----QELRLSDNHF-RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQ 158
                  +L   +N    +P+        S L+     +NQ+        SL     +L 
Sbjct: 158 ALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA-------SLPTLPSELY 204

Query: 159 SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA 218
            L   ++                    RL+ +      P       + L  L +  + L 
Sbjct: 205 KLWAYNN--------------------RLTSL------PALP----SGLKELIVSGNRLT 234

Query: 219 GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMK 278
               LP      L  L +S N +   +P+     L SL V+    N L   +P S  ++ 
Sbjct: 235 S---LP-VLPSELKELMVSGNRLT-SLPMLPSG-LLSLSVYR---NQLT-RLPESLIHLS 284

Query: 279 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
               ++L  N L+ E           +      +  +        ++        L    
Sbjct: 285 SETTVNLEGNPLS-ERTLQA---LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

Query: 339 WL 340
           WL
Sbjct: 341 WL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
            +  + L +  + L   +P  +     I TL +  NNLT L P+    L+   +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTSL-PALPPELR---TLEVSGN 91

Query: 572 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
           +L   +P     L  L +FS    +L    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (313), Expect = 2e-30
 Identities = 100/577 (17%), Positives = 187/577 (32%), Gaps = 134/577 (23%)

Query: 10  NNTI--LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKEL 67
           +  I  + + T L+      L   ++    D      L  +  L      I         
Sbjct: 11  DTPINQIFTDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIK-------- 59

Query: 68  YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHFRIPISL 121
                       I   +  NNL  ++ S N++       NL    ++ +++N       +
Sbjct: 60  -----------SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA---DI 105

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
            PL N + L      NNQ+  +I    +LT     L  L LSS+    ++    L     
Sbjct: 106 TPLANLTNLTGLTLFNNQIT-DIDPLKNLT----NLNRLELSSN---TISDISALSGLTS 157

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
           L+ +   + ++    P   L N T L  L + ++ ++      +     L  L  +NN I
Sbjct: 158 LQQLSFGN-QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 301
               P+    +L +L   +++ N L      +  ++  L  LDL+NNQ++   P     G
Sbjct: 212 SDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---G 263

Query: 302 CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL 361
              L  L L  N +             NI   L  LT L ++ + EN LE   P     L
Sbjct: 264 LTKLTELKLGANQIS------------NISP-LAGLTALTNLELNENQLEDISP--ISNL 308

Query: 362 YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
            +L  L +  NNIS   P       ++++    N +               S    +  L
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNKV---------------SDVSSLANL 352

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSL 481
           + ++ L  GHN +    P  L  L ++  L L++ +   +      N ++  +  N +  
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT 541
                                                           P  I +      
Sbjct: 411 L---------------------------------------------IAPATISDGGSYTE 425

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
            ++++N  +     ++       ++       +G + 
Sbjct: 426 PDITWNLPSYTNEVSY-TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (307), Expect = 1e-29
 Identities = 90/480 (18%), Positives = 161/480 (33%), Gaps = 87/480 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L           +  + +L++L  +N + N L    D+    +L  L ++ +  N+I   
Sbjct: 51  LQADRLGI--KSIDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA-- 103

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHF 115
                            DI    +  NL  L +  N+I       NL     L LS N  
Sbjct: 104 -----------------DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 146

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKF 175
                +  L   + L+     N     ++    +LT     L+ L +SS+    V+    
Sbjct: 147 S---DISALSGLTSLQQLSFGNQV--TDLKPLANLT----TLERLDISSNK---VSDISV 194

Query: 176 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 235
           L    +LE +  ++ +++   P   L   T L  L L  + L       + S   L  LD
Sbjct: 195 LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249

Query: 236 ISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
           ++NN I    P+     L  L    +  N +    P     +  L  L+L+ NQL    P
Sbjct: 250 LANNQISNLAPLS---GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

Query: 296 EHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLTWLIHII 344
                   NL +L L  N++            + L+  NN +S ++   L NLT +  + 
Sbjct: 305 IS---NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DVSS-LANLTNINWLS 359

Query: 345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRD 404
              N +    P     L  +  L ++D   + +  +    +SI                +
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP---------------N 402

Query: 405 LSYNLLNGSI-PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
              N+    I P  I +    +   +  N             +Q   +     +  G++ 
Sbjct: 403 TVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (298), Expect = 2e-28
 Identities = 88/421 (20%), Positives = 150/421 (35%), Gaps = 73/421 (17%)

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
             +  ++ TL      +       +     L  ++ SNN +    P++    L  L    
Sbjct: 42  QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLK---NLTKLVDIL 96

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK---- 316
           ++ N +    P    N+  L  L L NNQ+T   P        NL  L LS+N++     
Sbjct: 97  MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISA 151

Query: 317 -------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 369
                  + L   N  ++   P  L NLT L  + +  N +         +L +L+ L  
Sbjct: 152 LSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIA 206

Query: 370 SDNNISGSLPSCFHPLSIEQVHLSKNML--------HRQLKR-DLSYNLLNGSIPDWIGE 420
           ++N IS  +       +++++ L+ N L           L   DL+ N ++   P  +  
Sbjct: 207 TNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG 263

Query: 421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYE---SYNN 477
           L++L+ L LG N +    P  L  L  L  L+L+ N L   I P  +   L      +NN
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNN 320

Query: 478 SSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 537
            S +         +                    L+ L  L+   NK+       + NLT
Sbjct: 321 ISDISP-------VSS------------------LTKLQRLFFYNNKVSD--VSSLANLT 353

Query: 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597
            I  L+  +N ++ L P   +NL  I  L L+         +    +            L
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 598 S 598
            
Sbjct: 412 I 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 2e-24
 Identities = 67/343 (19%), Positives = 117/343 (34%), Gaps = 74/343 (21%)

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLY 320
            +   +       L    +T  + +        +  L      +K             + 
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 74

Query: 321 LTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS 380
            +NN L+   P  L NLT L+ I+M  N +    P     L +L  L + +N I+  +  
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP 129

Query: 381 CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 440
             +  ++ ++ LS N +               S    +  L+ L  L  G N +    P 
Sbjct: 130 LKNLTNLNRLELSSNTI---------------SDISALSGLTSLQQLSFG-NQVTDLKP- 172

Query: 441 QLCELNQLQLLDLSNNSLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQG 496
            L  L  L+ LD+S+N +  S            +L  + N  S +         +     
Sbjct: 173 -LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP-------LGI--- 219

Query: 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 556
                          L+ L  L L+ N+L       + +LT +  L+L+ N ++ L P  
Sbjct: 220 ---------------LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-- 260

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599
            S L  +  L L  N+++   P  L  L  L    +  N L  
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (315), Expect = 3e-30
 Identities = 83/357 (23%), Positives = 132/357 (36%), Gaps = 60/357 (16%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
               I+   N+ +R  +P  + D    + + N++   ++     +F     +Q L +  N
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
            +   +P H+      L  L+L  N L         SL   I     N   L  + M  N
Sbjct: 110 AIR-YLPPHVFQNVPLLTVLVLERNDLS--------SLPRGI---FHNTPKLTTLSMSNN 157

Query: 349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML-----HRQLKR 403
           +LE      F    SLQ L +S N ++    S    L     ++S N+L        ++ 
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSYNLLSTLAIPIAVEE 215

Query: 404 -DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSI 462
            D S+N +N  +        +L+ L L HNNL  +    L     L  +DLS N L   I
Sbjct: 216 LDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KI 269

Query: 463 PP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
               F        LY S N   +L+   +                         +  L  
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQP------------------------IPTLKV 305

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           L LS N L+ H+        R++ L L +N++  L  ST   LK+   L LS+N  +
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 1e-26
 Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 59/348 (16%)

Query: 252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311
                Y  +I M   D         +   +++   N+ +  ++P  L      ++ L L+
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83

Query: 312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD 371
           +  ++E   +   + +            +  + M  N +    P  F  +  L +L +  
Sbjct: 84  DLQIEE---IDTYAFAY--------AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 372 NNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
           N++S      FH    +  + +S N L       +  +             + L +L L 
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQA--------TTSLQNLQLS 179

Query: 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFF 490
            N L   V + L  +  L   ++S N L  ++        L  S+N+ + +         
Sbjct: 180 SNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGP------ 229

Query: 491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550
                               V   L+ L L  N L       + N   +  ++LSYN L 
Sbjct: 230 --------------------VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267

Query: 551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
            ++   F  ++ +E L +S N+L   +      + TL+V  +++N+L 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 1e-21
 Identities = 86/580 (14%), Positives = 186/580 (32%), Gaps = 140/580 (24%)

Query: 11  NTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLD 70
             I S+L +      ++++  + +      E  +L + + +    + +            
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGF-EDITLNNQKIVTFKNSTMR----------- 64

Query: 71  DTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRL 130
                  L     DSF  +E+L+++  +I+ +            F              +
Sbjct: 65  ------KLPAALLDSFRQVELLNLNDLQIEEI--------DTYAFA---------YAHTI 101

Query: 131 KIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHI 190
           +  +   N                  ++ L            P    +   L  + L   
Sbjct: 102 QKLYMGFNA-----------------IRYLP-----------PHVFQNVPLLTVLVLERN 133

Query: 191 KMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIG 250
            ++   P  +  N  KL TL + N++L         +   L  L +S+N +  H+ +   
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--- 188

Query: 251 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310
            ++PSL+  N+S N L     S+      ++ LD S+N +   +   +    V L  L L
Sbjct: 189 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKL 239

Query: 311 SNNSLKE-----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC 359
            +N+L +            + L+ N L   +      +  L  + +  N L   + +   
Sbjct: 240 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298

Query: 360 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 419
            + +L++LD+S N++                                       +     
Sbjct: 299 PIPTLKVLDLSHNHLL-------------------------------------HVERNQP 321

Query: 420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSS 479
           +  +L +L L HN++     ++L   + L+ L LS+N        C     L+ +    +
Sbjct: 322 QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVARPA 373

Query: 480 SLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRI 539
             D         +   G    K     Y  ++L  ++   +        +    G  +  
Sbjct: 374 VDDADQHCKIDYQLEHG-LCCKESDKPYLDRLLQYIALTSVVEK-----VQRAQGRCSAT 427

Query: 540 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
            T+N   +    +       L+  E L+   N+L  ++  
Sbjct: 428 DTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 52/275 (18%), Positives = 92/275 (33%), Gaps = 54/275 (19%)

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 389
           I   L        + +     +     E   L + +I+   ++ +     +         
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF---- 74

Query: 390 VHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
                    RQ++  +L+   +             +  L +G N +    P     +  L
Sbjct: 75  ---------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 449 QLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503
            +L L  N L  S+P   F N    TTL  S NN   +++                    
Sbjct: 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT------------------ 166

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHI 563
                 +  + L  L LS N+ + H+      +  +   N+SYN L+     T +    +
Sbjct: 167 -----FQATTSLQNLQLSSNR-LTHVDL--SLIPSLFHANVSYNLLS-----TLAIPIAV 213

Query: 564 ESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           E LD S+N +N       VEL  L    + +NNL+
Sbjct: 214 EELDASHNSINVVRGPVNVELTIL---KLQHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 5e-13
 Identities = 54/318 (16%), Positives = 102/318 (32%), Gaps = 90/318 (28%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L L  N  ++       +   L +L+++ N+LE  I+   F +   L+ L +  N++  
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---QELRLSDNHFRI 117
                                +     +L   ++SYN +  L +P   +EL  S N    
Sbjct: 186 V--------------------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 224

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
              +    N   L I   ++N     +T++  L      L  + LS +            
Sbjct: 225 --VVRGPVN-VELTILKLQHNN----LTDTAWL-LNYPGLVEVDLSYN------------ 264

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237
                    L  I               +L  L++                        S
Sbjct: 265 --------ELEKI------MYHPFVKMQRLERLYI------------------------S 286

Query: 238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
           NN +   + +     +P+L V ++S N L   +  +      L+ L L +N +   +   
Sbjct: 287 NNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 342

Query: 298 LAVGCVNLQFLMLSNNSL 315
                  L+ L LS+N  
Sbjct: 343 ---THHTLKNLTLSHNDW 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (301), Expect = 5e-29
 Identities = 66/383 (17%), Positives = 114/383 (29%), Gaps = 65/383 (16%)

Query: 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLD 284
              + L  L +        I       L SL +  +  N     + +  F  +  L++L 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLT 109

Query: 285 LSNNQLTG-EIPEHLAVGCVNLQFLMLSNNSLK--------------EGLYLTNN----- 324
           L+   L G  +  +      +L+ L+L +N++K                L LT N     
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 325 ------SLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378
                 +  G     L  L+ +    M E  L         +  S+  LD+S N    S+
Sbjct: 170 CEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 379 PSCF-HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL--SQLSHLILGHNNLE 435
              F   ++  ++          +     +             L  S +    L  + + 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288

Query: 436 GEVPVQLCE-LNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISF 489
             +   +      L+ L L+ N ++  I    F        L  S N   S+        
Sbjct: 289 -ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSI-------- 338

Query: 490 FIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNN 548
                   F             L  L  L LS N  I  +  Q    L  ++ L L  N 
Sbjct: 339 ----DSRMFEN-----------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ 382

Query: 549 LTGLIPSTFSNLKHIESLDLSYN 571
           L  +    F  L  ++ + L  N
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 2e-26
 Identities = 75/418 (17%), Positives = 139/418 (33%), Gaps = 71/418 (16%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           ++LS NS      +S + L  L+ L +   +    I    F  L  L  L +  N+    
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-- 92

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP----------QELRLS 111
                           L+   F+   NLEVL ++   +D  V+           + L L 
Sbjct: 93  ---------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 112 DNHFRIPISLEPLFNH-SRLKIFHAKNNQMNAE-------ITESHSLTAPNFQLQSLSLS 163
           DN+ +  I     F +  R  +     N++ +            H        +    ++
Sbjct: 138 DNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 164 SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL--LENNTKLATLFLVNDSLAGPF 221
             +               +  + LS                  TK+ +L L N       
Sbjct: 197 EYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN------S 249

Query: 222 WLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFL 280
           +    S       D  N   +G            +   ++S + +  ++    F +   L
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFSHFTDL 301

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
           + L L+ N++  +I ++   G  +L  L LS N L         S+   +   L  L  L
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG--------SIDSRMFENLDKLEVL 352

Query: 341 IHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKN 395
               +  NH+   +  + F  L +L+ L +  N +  S+P   F  L S++++ L  N
Sbjct: 353 ---DLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (250), Expect = 2e-22
 Identities = 74/355 (20%), Positives = 131/355 (36%), Gaps = 46/355 (12%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 316
            +P+       +  +DLS N +  E+ E       +LQFL +   +              
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 317 --EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL-EGPIPVE-FCQLYSLQILDISDN 372
               L L  N       G    L  L  + + + +L    +    F  L SL++L + DN
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 373 NISGSLPSC-FHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
           NI    P+  F  +     + L+ N + + +  +   N            LS ++   + 
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLL--RLSSITLQDMN 196

Query: 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT-----LYESYNNSSSLDEKF 485
              L  E      +   +  LDLS N    S+   F +            +NS ++   F
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 486 EISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNL 544
             + F +     F         +G   S +    LS +K I  +   +  + T ++ L L
Sbjct: 257 GHTNFKDPDNFTF---------KGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTL 306

Query: 545 SYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLEVFSVAYNNLS 598
           + N +  +  + F  L H+  L+LS N L G I  ++   L  LEV  ++YN++ 
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 60/345 (17%), Positives = 107/345 (31%), Gaps = 42/345 (12%)

Query: 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSI--PSSFGNMKFLQLLDLSN 287
            L IL +  N     +     + L +L V  ++   LDG++   + F  +  L++L L +
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 288 NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPE 347
           N +    P    +       L L+ N +K        +  G     L  L+ +    M E
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNE 197

Query: 348 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKRDLS 406
             L         +  S+  LD+S N    S+   F   ++  ++          +     
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 407 YNLLNGSIPDWIGEL--SQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIP 463
           +             L  S +    L  + +   +   +      L+ L L+ N ++  I 
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KID 315

Query: 464 P-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTT-KNIAYIY---------Q 508
              F        L  S N   S+                F     +  +           
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSI------------DSRMFENLDKLEVLDLSYNHIRALG 363

Query: 509 GKV---LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNL 549
            +    L  L  L L  N+L   +P  I   LT +Q + L  N  
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 72/353 (20%), Positives = 123/353 (34%), Gaps = 68/353 (19%)

Query: 2   LNLSGNSFNNTI-LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           L +   +    I  ++   LSSL  L L+ N     ++   F+ L +LE L + +  +D 
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDG 117

Query: 61  FVVS----------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL-------- 102
            V+S          + L L D   K       F +     VLD+++NK+ ++        
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 103 --VVPQELRLSDNHF----RIPISLEP---LFNHSRLKIFHAKNNQMNAEITESHSLTAP 153
                  LRLS           +  E     F ++ +       N     + +       
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 154 NFQLQSLSLSSSYGDGVTFPKFLYHQHD-----------LEYVRLSHIKMNGEFPNWLLE 202
             ++QSL LS+SY  G +F    +   D           ++   LS  K+       +  
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFS 296

Query: 203 NNTKLATLFLVNDSL----AGPFW-----------------LPIHSHKRLG---ILDISN 238
           + T L  L L  + +       FW                 +     + L    +LD+S 
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 239 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQL 290
           N+IR  +  +    LP+L    +  N L  S+P   F  +  LQ + L  N  
Sbjct: 357 NHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 47/288 (16%)

Query: 319 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGS 377
           + L+ NS++         L  L  + + +      I    F  L SL IL +  N     
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 378 LPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG 436
               F+ L ++E + L++  L           L           L+ L  L+L  NN++ 
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLD-------GAVLSGNFFKP----LTSLEMLVLRDNNIKK 143

Query: 437 EVPVQL-CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495
             P      + +  +LDL+ N +         N                           
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN--------------------------- 176

Query: 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS 555
             F  K+   +     LS ++   ++   L           T I TL+LS N     +  
Sbjct: 177 --FQGKHFTLLR----LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 556 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603
            F +      +       +  +          +  +  +  L    ++
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (300), Expect = 2e-28
 Identities = 99/505 (19%), Positives = 174/505 (34%), Gaps = 82/505 (16%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L+LS NS +   +  ++ LS LR L L+ N +  S+D   F   +DLE LD+  N++   
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 59  --DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFR 116
                   + L L    F      +EF +   L  L +S  K   L              
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------------- 161

Query: 117 IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL 176
                  L   + L +     + ++  I    + +        L L        +    +
Sbjct: 162 ------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 177 YHQHDLEYVRLSHIKMNGEFPNWL------LENNTKLATLFLVNDSLAGPFWLPIHS--- 227
              + L +++LS+IK+N E    L      L     L  + L +        + +     
Sbjct: 216 S-VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 228 HKRLGILDISNNNIRGHIPVEIGD----VLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283
            + +  L+I N  I   I  E        L SL + ++       S  + +     + + 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHI 343
            LS +     I         +  F           L  T N  + ++      L  L  +
Sbjct: 335 MLSISDTP-FIHMVCPPSPSSFTF-----------LNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 344 IMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS------CFHPLSIEQVHLSKNML 397
           I+  N L+           ++  L+  D +++ SL S      C    SI  ++LS NML
Sbjct: 383 ILQRNGLKN-FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 398 HRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS 457
              + R L                 ++  L L +N +   +P  +  L  LQ L++++N 
Sbjct: 441 TGSVFRCLP---------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 458 LHGSIPP-CFDN----TTLYESYNN 477
           L  S+P   FD       ++   N 
Sbjct: 485 LK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 84/530 (15%), Positives = 171/530 (32%), Gaps = 100/530 (18%)

Query: 65  KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFR 116
           K L L        L + +    + L VL +S+N+I              + L +S N  +
Sbjct: 55  KALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 117 IPISLEPLFNHSRLKIFHAKNNQMNA--EITESHSLTAPNFQLQSLSLSSSYGDGVTFPK 174
             IS  P+ +   L+      N  +      E  +LT    +L  L LS++    +    
Sbjct: 114 N-ISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLT----KLTFLGLSAAKFRQLDLLP 165

Query: 175 FLYHQHDLEYVRLSHIKM-NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGI 233
             +       + L    +  GE  +  + N T L  +F  N   +    + +++   L +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 234 LDISNNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL-----LDLSN 287
            +I  N+     +   + ++     + N+++  ++ +   S    +F        L++ N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 288 NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG---WLGNLTWL-IHI 343
             +T  I               L +  +    ++ N     +          +    + I
Sbjct: 286 LTITERIDREEF----TYSETALKSLMI---EHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 344 IMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLK 402
               +       V      S   L+ + N  + S+      L  ++ + L +N L     
Sbjct: 339 ----SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL----- 389

Query: 403 RDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNSLHGS 461
           ++         +      +S L  L +  N+L      + C     + +L+LS+N L GS
Sbjct: 390 KNFF------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 462 IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLS 521
           +  C                                                 +  L L 
Sbjct: 444 VFRCLPPK---------------------------------------------VKVLDLH 458

Query: 522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
            N++   IP  + +L  +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 459 NNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 70/405 (17%), Positives = 115/405 (28%), Gaps = 44/405 (10%)

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284
           I     L +L +S+N IR  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 285 LSNNQLTGEIPEHLAVGC-VNLQFLMLSNNSLKEG--------------LYLTNNSLSGN 329
           LS N     +P     G    L FL LS    ++               L L +  + G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 330 IPG--WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387
                 + N T L  +  P +     + +    L  LQ+ +I  N+ +      F     
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQ 447
               L    L            L         E   + +L +       E       L  
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 448 LQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIY 507
           L +  + N     S    +           S S     +  F         ++       
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS-----DTPFIHMVCPPSPSSFTFLNFT 361

Query: 508 QGKVLSLLSG----------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTF 557
           Q      +            L L  N L  +          + +L     +L  L    +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 558 SNL----KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
                  + I  L+LS N L G +   L     ++V  +  N + 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 518 LYLSCNKLIGHIPPQ-IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576
           L LS N  I  +    I  L+ ++ L LS+N +  L    F   + +E LD+S+N+L   
Sbjct: 57  LSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 577 IPHQLVELKTLEVFS 591
               +  L+ L++  
Sbjct: 116 SCCPMASLRHLDLSF 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 4e-28
 Identities = 64/370 (17%), Positives = 119/370 (32%), Gaps = 76/370 (20%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328
           +I     N    ++  ++++ L  +    L     N++ L            L+ N LS 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKEL-----------DLSGNPLSQ 48

Query: 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 388
                L   T L  + +  N L   +      L +L+ LD+++N +   L       SIE
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIE 102

Query: 389 QVHLSKNMLH-------RQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-EVP 439
            +H + N +        +  K   L+ N +        G  S++ +L L  N ++     
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 440 VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499
                 + L+ L+L  N ++  +                                     
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKG----------------------------------- 186

Query: 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
                      V + L  L LS NKL   + P+  +   +  ++L  N L   I      
Sbjct: 187 ---------QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGN 619
            +++E  DL  N  +     +    K   V +VA   +  ++     +  T     + G 
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

Query: 620 TFLCGLPLPI 629
                LP P 
Sbjct: 294 YCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 57/347 (16%), Positives = 110/347 (31%), Gaps = 75/347 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
             ++ +S    + S      +++ L+L+GN L   I   +      LE L++  N +   
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-- 71

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---QELRLSDNHFRIP 118
                            +  + +S + L  LD++ N +  L+V    + L  ++N+    
Sbjct: 72  -----------------ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN---- 110

Query: 119 ISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSSSYGDGVTFPKFLY 177
           IS          K  +  NN+    IT    L      ++Q L L  +  D V F +   
Sbjct: 111 ISRVSCSRGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKL-ATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
               LE++ L +        N++      +   +                    L  LD+
Sbjct: 167 SSDTLEHLNLQY--------NFI----YDVKGQVVFAK----------------LKTLDL 198

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
           S+N +   +  E       +   ++  N L   I  +    + L+  DL  N        
Sbjct: 199 SSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH----- 250

Query: 297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHI 343
                C  L+     N  ++  +                 +  L H 
Sbjct: 251 -----CGTLRDFFSKNQRVQT-VAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 51/355 (14%), Positives = 118/355 (33%), Gaps = 81/355 (22%)

Query: 19  HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTL 78
           + +  +   +  +SL+         S  +++ELD+  N +                   +
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-----------------QI 49

Query: 79  DIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKI 132
              +   F  LE+L++S N +      ++L   + L L++N+      ++ L     ++ 
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY------VQELLVGPSIET 103

Query: 133 FHAKNNQMNAEITESHSLTAPNFQ-LQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIK 191
            HA NN ++        ++    Q  +++ L+++                    +++ + 
Sbjct: 104 LHAANNNIS-------RVSCSRGQGKKNIYLANN--------------------KITML- 135

Query: 192 MNGEFPNWLLENNTKLATLFLVNDSLAG-PFWLPIHSHKRLGILDISNNNIRGHIPVEIG 250
                 +      +++  L L  + +    F     S   L  L++  N I   +  ++ 
Sbjct: 136 -----RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

Query: 251 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310
                L   ++S N L   +   F +   +  + L NN+L   I + L     NL+   L
Sbjct: 190 --FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDL 244

Query: 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ 365
             N              G +  +      +  +             E C + +L 
Sbjct: 245 RGNGFH----------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 50/330 (15%)

Query: 126 NHSRLKIFHAKNNQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEY 184
           N +R KI    ++ +   +     S       ++ L LS +    ++    L     LE 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW----NVKELDLSGNPLSQIS-AADLAPFTKLEL 62

Query: 185 VRLSH--IKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIR 242
           + LS   +    +      E+ + L TL L N+ +       +     +  L  +NNNI 
Sbjct: 63  LNLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

Query: 243 GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 302
             +    G    ++Y   ++ N +        G    +Q LDL  N++       LA   
Sbjct: 113 -RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY 362
             L+ L L  N + +            + G +     L  + +  N L   +  EF    
Sbjct: 169 DTLEHLNLQYNFIYD------------VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAA 214

Query: 363 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
            +  + + +N +   +        ++E   L  N  H             G++ D+  + 
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH------------CGTLRDFFSKN 261

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLL 451
            ++  +             + C +  L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 54/319 (16%), Positives = 102/319 (31%), Gaps = 62/319 (19%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LSGN  +    + L   + L  LNL+ N L    +  + +SL  L  LD+  N     
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY---- 91

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                             ++E     ++E L  + N I  +                   
Sbjct: 92  ------------------VQELLVGPSIETLHAANNNISRV------------------- 114

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSSSYGDGVTFPKFLYHQH 180
                    K  +  NN+    IT    L      ++Q L L  +  D V F +      
Sbjct: 115 -SCSRGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP--IHSHKRLGILDISN 238
            LE++ L +  +  +    +     KL TL L ++ LA   ++     S   +  + + N
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRN 223

Query: 239 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHL 298
           N +   I   +     +L  F++  N             K  ++  ++   +  ++    
Sbjct: 224 NKLV-LIEKALRF-SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQN 279

Query: 299 AVGCVNLQFLMLSNNSLKE 317
              C             ++
Sbjct: 280 EEECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 15/177 (8%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           + L+ N             S ++ L+L  N ++     +   S   LE L++  N I   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 62  VVS------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI-------DNLVVPQEL 108
                    K L L        +   EF S   +  + +  NK+             +  
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 109 RLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSS 165
            L  N F      +    + R++    +  +      E            +      
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 5e-28
 Identities = 88/423 (20%), Positives = 141/423 (33%), Gaps = 88/423 (20%)

Query: 203 NNTKLATLFLVNDSLAGPFWLP--IHSHKRLGILDISNNNIRGHIPVEIGDVL------- 253
           +NT L      + +L     +P    + K       + +    + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 254 -----PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 308
                   +   ++   L  S+P    +   L+ L  S N LT E+PE       +L   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 309 MLSNNSLK------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY 362
             +  +L       E L ++NN L   +P  L N ++L  I +  N L+  +P       
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PP 173

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH------RQLKR-DLSYNLLNGSIP 415
           SL+ +   +N +   LP   +   +  ++   N L         L+      N+L     
Sbjct: 174 SLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--EEL 230

Query: 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESY 475
             +  L  L+ +   +N L+  +P     L  L + D     L          T L  S 
Sbjct: 231 PELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL---TFLDVSE 286

Query: 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 535
           N  S L E                           +   L  L  S N+ I  +     +
Sbjct: 287 NIFSGLSE---------------------------LPPNLYYLNASSNE-IRSLCDLPPS 318

Query: 536 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 595
           L     LN+S N L  L P+    L   E L  S+N L  ++P     LK L    V YN
Sbjct: 319 LE---ELNVSNNKLIEL-PALPPRL---ERLIASFNHLA-EVPELPQNLKQL---HVEYN 367

Query: 596 NLS 598
            L 
Sbjct: 368 PLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (274), Expect = 2e-25
 Identities = 85/513 (16%), Positives = 167/513 (32%), Gaps = 108/513 (21%)

Query: 82  EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHF-RIPISLEPLFNHSRLKIFHAKNNQM 140
           E ++  +      ++++ +    P      +    R+   L+      +       N  +
Sbjct: 29  EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR-----QAHELELNNLGL 83

Query: 141 NAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL 200
                   SL      L+SL  S +       P+       L     +           L
Sbjct: 84  -------SSLPELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNL--------KAL 126

Query: 201 LENNTKLATLFLVNDSLAGPFWLP-IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
            +    L  L + N+ L     LP + +   L I+D+ NN+++     ++ D+ PSL   
Sbjct: 127 SDLPPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFI 178

Query: 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE-- 317
               N L         N+ FL  +   NN L  ++P+      ++L+ ++  NN L+E  
Sbjct: 179 AAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLESIVAGNNILEELP 231

Query: 318 ---------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILD 368
                     +Y  NN L   +P    +L  L    + +N+L   +P     L  L + +
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSE 286

Query: 369 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHR------QLKR-DLSYNLLNGSIPDWIGEL 421
              + +S   P+      +  ++ S N +         L+  ++S N L   +P      
Sbjct: 287 NIFSGLSELPPN------LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-- 337

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSL 481
            +L  LI   N+L  EVP        L+ L +  N L    P   ++       ++ + +
Sbjct: 338 -RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEV 391

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT 541
            E                               L  L++  N L    P    ++     
Sbjct: 392 PEL---------------------------PQNLKQLHVETNPLR-EFPDIPESVED--- 420

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           L ++   +             +E     ++  +
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 1e-23
 Identities = 73/345 (21%), Positives = 116/345 (33%), Gaps = 65/345 (18%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK--EGLYLTNNSL 326
            +P    N+K       + ++     P         +    L +   +    L L N  L
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVSRLRDCLDRQAHELELNNLGL 83

Query: 327 SGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 386
           S ++P    +L  L   +   N L   +P     L SL + + +   +S   P       
Sbjct: 84  S-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP------L 132

Query: 387 IEQVHLSKNMLH--------RQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE 437
           +E + +S N L           LK  D+  N L   +PD       L  +  G+N LE E
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE-E 187

Query: 438 VPVQLCELNQLQLLDLSNNSLHGSIPPCFDN-TTLYESYNNSSSLDEKFEISFFIEGPQG 496
           +P +L  L  L  +   NNSL   +P    +  ++    N    L E             
Sbjct: 188 LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEELPEL------------ 233

Query: 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 556
                        + L  L+ +Y   N L   +P    +L   + LN+  N LT L P  
Sbjct: 234 -------------QNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLTDL-PEL 275

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
             +L     LD+S N  +  +      L  L   S    +L    
Sbjct: 276 PQSLT---FLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLP 316

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 75/488 (15%), Positives = 153/488 (31%), Gaps = 80/488 (16%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD------------SLRDLE 49
                ++    +     ++ S        +  E +      +              R   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 50  ELDIGENKIDKFVVS----KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP 105
           EL++    +          + L          L      S  +L V + +   + +L   
Sbjct: 75  ELELNNLGLSSLPELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSDLPPL 132

Query: 106 -QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS 164
            + L +S+N       L  L N S LKI    NN +         L      L+ ++  +
Sbjct: 133 LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK-------KLPDLPPSLEFIAAGN 182

Query: 165 SYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP 224
           +    +     L +   L  +   +  +  + P+        L ++   N+ L       
Sbjct: 183 NQ---LEELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLESIVAGNNILEEL--PE 232

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284
           + +   L  +   NN ++      + D+ PSL   N+  N L   +P    ++ FL + +
Sbjct: 233 LQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSE 286

Query: 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK---------EGLYLTNNSLSGNIPGWLG 335
              + L+   P        NL +L  S+N ++         E L ++NN L   +P    
Sbjct: 287 NIFSGLSELPP--------NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP 337

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
            L  LI      NHL   +P       +L+ L +  N +    P     +   +++    
Sbjct: 338 RLERLI---ASFNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 396 MLHRQLKR----DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLL 451
            +    +      +  N L    PD       +  L +    +           ++L+  
Sbjct: 390 EVPELPQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDD 445

Query: 452 DLSNNSLH 459
              ++  H
Sbjct: 446 VFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 84/427 (19%), Positives = 145/427 (33%), Gaps = 76/427 (17%)

Query: 2   LNLSGNSFNNTILSSLTH-LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           L L+        LSSL      L SL  + NSL   +  +   SL+ L   +     +  
Sbjct: 76  LELNNLG-----LSSLPELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSD 128

Query: 61  FVVS-KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI----DNLVVPQELRLSDNHF 115
                + L + +   +    + E  + + L+++D+  N +    D     + +   +N  
Sbjct: 129 LPPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA-----------PNF----QLQSL 160
                L  L N   L   +A NN +        SL +           P       L ++
Sbjct: 186 E---ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 242

Query: 161 SLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGP 220
              ++     T P        LE + +    +  + P  L ++ T L     +   L+  
Sbjct: 243 YADNN--LLKTLPDLPPS---LEALNVRDNYLT-DLPE-LPQSLTFLDVSENIFSGLSE- 294

Query: 221 FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 280
                     L  L+ S+N IR      + D+ PSL   N+S N L   +P+       L
Sbjct: 295 ------LPPNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---L 339

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE------GL-YLTNNSLSGNIPGW 333
           + L  S N L  E+PE       NL+ L +  N L+E       +  L  NS    +P  
Sbjct: 340 ERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 393
             NL  L    +  N L    P       S++ L ++   +              +  + 
Sbjct: 395 PQNLKQLH---VETNPLRE-FPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 394 KNMLHRQ 400
           ++  H  
Sbjct: 448 EHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 54/220 (24%)

Query: 394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 453
           +N+ +  L+  L ++     +P     +   +      +  E   P    E  ++ +  L
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 454 SNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS 513
            +     +         L  +    SSL E                              
Sbjct: 66  RDCLDRQA-------HELELNNLGLSSLPEL---------------------------PP 91

Query: 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS---------------TFS 558
            L  L  SCN L   +P    +L  +   N +   L+ L P                   
Sbjct: 92  HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 559 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           N   ++ +D+  N L  K+P     L+ +   +   N L 
Sbjct: 151 NSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 1e-25
 Identities = 69/363 (19%), Positives = 122/363 (33%), Gaps = 86/363 (23%)

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
           L ++  S+  +   +P ++    P   + ++  N +       F N+K L  L L NN++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLK----------EGLYLTNNSLSGNIPGWLGNLTWL 340
           + +I        V L+ L LS N LK          + L +  N ++         L  +
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 341 IHIIMPENHL-EGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
           I + +  N L    I    F  +  L  + I+D NI+ ++P    P S+ ++HL  N + 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKIT 205

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
           +     +    L G        L+ L+ L L  N++       L     L+ L L+NN L
Sbjct: 206 K-----VDAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 459 HGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
              +P    +                                              +  +
Sbjct: 253 V-KVPGGLAD-------------------------------------------HKYIQVV 268

Query: 519 YLSCNKLIGHIPPQ-------IGNLTRIQTLNLSYNNL--TGLIPSTFSNLKHIESLDLS 569
           YL  N  I  I                   ++L  N +    + PSTF  +    ++ L 
Sbjct: 269 YLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 570 YNK 572
             K
Sbjct: 328 NYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 81/323 (25%)

Query: 279 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
            L+++  S+  L  ++P+ L     +   L L NN + E   + +          L NL 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITE---IKDGDFKN-----LKNLH 79

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
            LI   +  N +    P  F  L  L+ L +S N +   LP    P +++++ + +N + 
Sbjct: 80  TLI---LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEI- 133

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV--PVQLCELNQLQLLDLSNN 456
                 +  ++ NG        L+Q+  + LG N L+           + +L  + +++ 
Sbjct: 134 ----TKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
           ++  +IP                                               +   L+
Sbjct: 182 NIT-TIPQ---------------------------------------------GLPPSLT 195

Query: 517 GLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
            L+L  NK I  +       L  +  L LS+N+++ +   + +N  H+  L L+ NKL  
Sbjct: 196 ELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 576 KIPHQLVELKTLEVFSVAYNNLS 598
           K+P  L + K ++V  +  NN+S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 59/359 (16%), Positives = 115/359 (32%), Gaps = 88/359 (24%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
                L+L  N +   I   +F +L++L  L +  NKI                   +  
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-----------------SKISP 93

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVP-----QELRLSDNHFRIPISLEPLFNHSRLKIFHA 135
             F     LE L +S N++  L        QELR+ +N     +        +++ +   
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVEL 152

Query: 136 KNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE 195
             N + +   E+ +      +L  + ++ +                     ++ I     
Sbjct: 153 GTNPLKSSGIENGAFQGMK-KLSYIRIADT--------------------NITTI----- 186

Query: 196 FPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS 255
            P  L  +                           L  L +  N I   +       L +
Sbjct: 187 -PQGLPPS---------------------------LTELHLDGNKIT-KVDAASLKGLNN 217

Query: 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 315
           L    +S N++      S  N   L+ L L+NN+L  ++P  LA     +Q + L NN++
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNI 275

Query: 316 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE-GPIPVE-FCQLYSLQILDISDN 372
                + +N      PG+         + +  N ++   I    F  +Y    + + + 
Sbjct: 276 SA---IGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 61/331 (18%), Positives = 103/331 (31%), Gaps = 77/331 (23%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L  N           +L +L +L L  N +   I    F  L  LE L + +N++ + 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 62  VVS-----KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP----------Q 106
                   +EL + +      +    F+  N + V+++  N + +  +            
Sbjct: 116 PEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 107 ELRLSDNHFR-IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSS 164
            +R++D +   IP     L     L   H   N+    IT+  + +      L  L LS 
Sbjct: 175 YIRIADTNITTIPQG---LP--PSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSF 225

Query: 165 SYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG-PFWL 223
           +                     +S +       N  L N   L  L L N+ L   P  L
Sbjct: 226 N--------------------SISAV------DNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283
               HK + ++ + NNNI                   I  N      P           +
Sbjct: 260 A--DHKYIQVVYLHNNNIS-----------------AIGSNDFCP--PGYNTKKASYSGV 298

Query: 284 DLSNNQLT-GEIPEHLAVGCVNLQFLMLSNN 313
            L +N +   EI             + L N 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 17/112 (15%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L LS NS +     SL +   LR L+LN N L   +        + ++ + +  N I   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAI 278

Query: 62  VVS--------------KELYLDDTGFKGT-LDIREFDSFNNLEVLDMSYNK 98
             +                + L     +   +    F        + +   K
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (273), Expect = 3e-25
 Identities = 73/489 (14%), Positives = 141/489 (28%), Gaps = 91/489 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
             ++ +S    + S      +++ L+L+GN L   I   +      LE L++  N +   
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-- 71

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---QELRLSDNHFRIP 118
                            +  + +S + L  LD++ N +  L+V    + L  ++N+    
Sbjct: 72  -----------------ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN---- 110

Query: 119 ISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSSSYGDGVTFPKFLY 177
           IS          K  +  NN+    IT    L      ++Q L L  +  D V F +   
Sbjct: 111 ISRVSCSRGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKL-ATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
               LE++ L +        N++      +   +                    L  LD+
Sbjct: 167 SSDTLEHLNLQY--------NFI----YDVKGQVVFAK----------------LKTLDL 198

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
           S+N +   +  E       +   ++  N L   I  +    + L+  DL  N        
Sbjct: 199 SSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 297 HLAVGCVNLQFLMLSNNSLKEG-----------LYLTNNSLSGNIPGWLGNLTWLIHIIM 345
                   +Q +         G            +            +   L  L     
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 346 PENHLEG----PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNML--- 397
                +G     +  E       + +D         +        +   +   K  L   
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 398 -------HRQLKRDLSYNLLNGSIPDWIGELSQLSHLI-LGHNNLEGEVPVQLCELNQLQ 449
                  H +L   L   +    +     E S L  L  +     E  V  Q  + N ++
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 450 LLDLSNNSL 458
             D+  +  
Sbjct: 436 DWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 2e-24
 Identities = 63/464 (13%), Positives = 134/464 (28%), Gaps = 85/464 (18%)

Query: 126 NHSRLKIFHAKNNQMNAEITESH-SLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEY 184
           N +R KI    ++     + ++  SL    + ++ L LS +    ++    L     LE 
Sbjct: 8   NGNRYKIEKVTDSS----LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLEL 62

Query: 185 VRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGH 244
           + LS   +        LE+ + L TL L N+ +       +     +  L  +NNNI   
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-R 113

Query: 245 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 304
           +    G    ++Y   ++ N +        G    +Q LDL  N++       LA     
Sbjct: 114 VSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSL 364
           L+ L L  N + +            + G +     L  + +  N L   +  EF     +
Sbjct: 171 LEHLNLQYNFIYD------------VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216

Query: 365 QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQL 424
             + + +N +                                       I   +     L
Sbjct: 217 TWISLRNNKLV-------------------------------------LIEKALRFSQNL 239

Query: 425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 484
            H  L  N                ++  ++  ++        +  T+    +  +   E 
Sbjct: 240 EHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNL 544
               F                          + L    ++    +  +  N  R + ++ 
Sbjct: 299 LPAPFADRLIALK--------------RKEHALLSGQGSE-TERLECERENQARQREIDA 343

Query: 545 SYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 588
                  +I       +   +L+     L+ ++ +       L+
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 4e-24
 Identities = 57/367 (15%), Positives = 112/367 (30%), Gaps = 83/367 (22%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328
           +I     N    ++  ++++ L  +    L     N++ L LS N L           S 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL-----------SQ 48

Query: 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 388
                L   T L  + +  N L   +      L +L+ LD+++N +   L          
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-------- 97

Query: 389 QVHLSKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQ 447
                       ++    + N ++  +           ++ L +N +     +     ++
Sbjct: 98  ---------GPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 448 LQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIY 507
           +Q LDL  N +          +                                      
Sbjct: 146 VQYLDLKLNEIDTVNFAELAAS-------------------------------------- 167

Query: 508 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLD 567
                  L  L L  N +   +  Q+    +++TL+LS N L   +   F +   +  + 
Sbjct: 168 ----SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 568 LSYNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEILEWTAQFATFNKSSYEGNTFLCGLP 626
           L  NKL   I   L   + LE F +  N    G + ++ ++       + +    L G  
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 627 LPICRSP 633
              C  P
Sbjct: 280 EEECTVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 44/376 (11%), Positives = 93/376 (24%), Gaps = 57/376 (15%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           + L+ N             S ++ L+L  N ++     +   S   LE L++  N I   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
            V  ++                     L+ LD+S NK+                 +    
Sbjct: 184 -VKGQVVF-----------------AKLKTLDLSSNKLA---------------FMGPEF 210

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
           +     + +     +NN++                L+   L  +     T   F      
Sbjct: 211 QSA---AGVTWISLRNNKLVLIEKALRFSQ----NLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 182 LEYVRLSHIKM--NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
           ++ V    +K           +            +        L     K   +L    +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 240 NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
                +  E  +        +         I       +    L+     L  E   +  
Sbjct: 324 ETER-LECEREN-QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGR 380

Query: 300 VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC 359
                L   +       E  + T              L  L  I   + + E  +  +  
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEE---------QSPLQLLRAI--VKRYEEMYVEQQSV 429

Query: 360 QLYSLQILDISDNNIS 375
           Q  +++  D+  +  +
Sbjct: 430 QNNAIRDWDMYQHKET 445

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (262), Expect = 9e-24
 Identities = 57/275 (20%), Positives = 95/275 (34%), Gaps = 42/275 (15%)

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259
             +   K A      +       L      +   L ++  N+   +P  +    P + V 
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK--- 316
            I+ NAL  S+P    +   L+ LD  +N+L+  +PE  A    +L+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLTMLP 136

Query: 317 ------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 370
                 E +   NN L+  +P    +L  L    +  N L   +P       SL+ LD+S
Sbjct: 137 ELPALLEYINADNNQLT-MLPELPTSLEVLS---VRNNQLTF-LPE---LPESLEALDVS 188

Query: 371 DNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
            N +  SLP+              +    ++      N +   IP+ I  L     +IL 
Sbjct: 189 TNLLE-SLPAVPVRN--------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465
            N L   +   L +                S    
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 58/311 (18%), Positives = 103/311 (33%), Gaps = 54/311 (17%)

Query: 308 LMLS-NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMP-ENHLEGPIPVEFCQLYSLQ 365
           +ML  NN+         N++SG    +           +P EN  E    ++ C +    
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 366 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR------QLKR-DLSYNLLNGSIPDWI 418
            L ++  N+S SLP    P  I  + +++N L         L+  D   N L+ ++P+  
Sbjct: 63  ELQLNRLNLS-SLPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPE-- 117

Query: 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN-TTLYESYNN 477
              + L HL + +N L   +P        L+ ++  NN L   +P    +   L    N 
Sbjct: 118 -LPASLKHLDVDNNQLT-MLPE---LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQ 171

Query: 478 SSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 537
            + L E                           +   L  L +S N L   +P       
Sbjct: 172 LTFLPE---------------------------LPESLEALDVSTNLLE-SLPAVPVRNH 203

Query: 538 RIQT----LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593
             +          N +T + P    +L    ++ L  N L+ +I   L +      +   
Sbjct: 204 HSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 594 YNNLSGEILEW 604
               S    + 
Sbjct: 263 RIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 3e-20
 Identities = 61/361 (16%), Positives = 107/361 (29%), Gaps = 95/361 (26%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLP---SLYVFNISMNALDGSIPSSFGNMKF 279
           LPI+++  L   +   N I G    +            +   + N     +      +  
Sbjct: 5   LPINNNFSL-SQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
              L L+   L+  +P++L      +  L ++ N+L              +P    +L +
Sbjct: 61  FSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS------------LPELPASLEY 104

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
           L      +N L   +P       SL+ LD+ +N ++  LP    P  +E ++   N L  
Sbjct: 105 LD---ACDNRLST-LPELPA---SLKHLDVDNNQLT-MLPEL--PALLEYINADNNQLT- 153

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
                         +P+     + L  L + +N L   +P        L+ LD+S N L 
Sbjct: 154 -------------MLPE---LPTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLE 193

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
            S+P                                                        
Sbjct: 194 -SLPAVPVRNH---------------------------------------HSEETEIFFR 213

Query: 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
              N+ I HIP  I +L    T+ L  N L+  I  + S               +     
Sbjct: 214 CRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 580 Q 580
           Q
Sbjct: 273 Q 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 65/468 (13%), Positives = 143/468 (30%), Gaps = 110/468 (23%)

Query: 2   LNLSGNSFNNTILSS----LTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK 57
            +LS NSF NTI  +     +         L G +   ++ + +   +    EL +    
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 58  IDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI 117
           +    +   L                     + VL+++ N + +L  P+           
Sbjct: 71  LS--SLPDNL------------------PPQITVLEITQNALISL--PELP--------- 99

Query: 118 PISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY 177
                     + L+   A +N+++       +L      L+ L + ++            
Sbjct: 100 ----------ASLEYLDACDNRLS-------TLPELPASLKHLDVDNN------------ 130

Query: 178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237
                   +L+        P         L  +   N+ L     LP      L +L + 
Sbjct: 131 --------QLT------MLPELP----ALLEYINADNNQLTM---LP-ELPTSLEVLSVR 168

Query: 238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ----LLDLSNNQLTGE 293
           NN +       + ++  SL   ++S N L+ S+P+        +          N++T  
Sbjct: 169 NNQLT-----FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353
           IPE++         ++L +N L   +  + +  +   P + G   +       +N     
Sbjct: 222 IPENIL-SLDPTCTIILEDNPLSSRIRESLSQQT-AQPDYHGPRIYFSMSDGQQNT---- 275

Query: 354 IPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYN---LL 410
                 +  +  +      N    +   +H    E+   + +    +L   +S       
Sbjct: 276 ----LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGF 331

Query: 411 NGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
              +  W+ +LS  + L      +  +      +   L   +L    L
Sbjct: 332 REQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 2e-23
 Identities = 68/362 (18%), Positives = 114/362 (31%), Gaps = 85/362 (23%)

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
           L ++  S+  ++  +P EI    P   + ++  N +       F  ++ L  L L NN++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLK----------EGLYLTNNSLSGNIPGWLGNLTWL 340
           + +I E        LQ L +S N L             L + +N +     G    L  +
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 341 IHIIMPENHL-EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
             I M  N L              L  L IS+  ++  +P    P ++ ++HL  N +  
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDHNKIQA 207

Query: 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
                +    L           S+L  L LGHN +       L  L  L+ L L NN L 
Sbjct: 208 -----IELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
             +P    +                                           L LL  +Y
Sbjct: 255 -RVPAGLPD-------------------------------------------LKLLQVVY 270

Query: 520 LSCNKLIGHIPPQI-------GNLTRIQTLNLSYNNLT--GLIPSTFSNLKHIESLDLSY 570
           L  N  I  +                   ++L  N +    + P+TF  +    ++    
Sbjct: 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 571 NK 572
            K
Sbjct: 330 YK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 80/322 (24%)

Query: 279 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
            L+++  S+  L   +P+ ++    +   L L NN + E   L  +   G     L +L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISE---LRKDDFKG-----LQHLY 81

Query: 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
            L+   +  N +       F  L  LQ L IS N++   +P    P S+ ++ +  N + 
Sbjct: 82  ALV---LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRI- 135

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL-EGEVPVQLCELNQLQLLDLSNNS 457
               R +   + +G        L  ++ + +G N L          +  +L  L +S   
Sbjct: 136 ----RKVPKGVFSG--------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
           L   IP                                               +   L+ 
Sbjct: 184 LT-GIPK---------------------------------------------DLPETLNE 197

Query: 518 LYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576
           L+L  NK I  I  +     +++  L L +N +  +   + S L  +  L L  NKL+ +
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 577 IPHQLVELKTLEVFSVAYNNLS 598
           +P  L +LK L+V  +  NN++
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 60/330 (18%), Positives = 100/330 (30%), Gaps = 76/330 (23%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L  N  +         L  L +L L  N +   I  K F  LR L++L I +N + + 
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 62  VVS-----KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP---------QE 107
             +      EL + D   +  +    F    N+  ++M  N ++N               
Sbjct: 118 PPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176

Query: 108 LRLSDNHFR-IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSSS 165
           LR+S+     IP  L        L   H  +N+    I          + +L  L L  +
Sbjct: 177 LRISEAKLTGIPKDL-----PETLNELHLDHNK----IQAIELEDLLRYSKLYRLGLGHN 227

Query: 166 YGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG-PFWLP 224
                               ++  I       N  L     L  L L N+ L+  P  LP
Sbjct: 228 --------------------QIRMI------ENGSLSFLPTLRELHLDNNKLSRVPAGLP 261

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284
               K L ++ +  NNI                   + +N              +   + 
Sbjct: 262 --DLKLLQVVYLHTNNIT-----------------KVGVNDFCP--VGFGVKRAYYNGIS 300

Query: 285 LSNNQLT-GEIPEHLAVGCVNLQFLMLSNN 313
           L NN +   E+         +   +   N 
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 72/328 (21%)

Query: 88  NLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 139
           +  +LD+  N I          L     L L +N     I  +      +L+  +   N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNH 113

Query: 140 MNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW 199
               + E       +  L  L +  +                    R+  +      P  
Sbjct: 114 ----LVEIPPNLPSS--LVELRIHDN--------------------RIRKV------PKG 141

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPIH--SHKRLGILDISNNNIRGHIPVEIGDVLPSLY 257
           +      +  + +  + L              +L  L IS   +   IP    D+  +L 
Sbjct: 142 VFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIPK---DLPETLN 196

Query: 258 VFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK 316
             ++  N +  +I          L  L L +NQ+   I          L+ L L NN L 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254

Query: 317 EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY------SLQILDIS 370
                        +P  L +L  L  + +  N++      +FC +           + + 
Sbjct: 255 R------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 371 DNNISGSL--PSCFHPL-SIEQVHLSKN 395
           +N +      P+ F  +     +     
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 56/344 (16%), Positives = 106/344 (30%), Gaps = 87/344 (25%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLT 291
            LD+SNN I  +I         +L    ++ N ++ +I   SF ++  L+ LDLS N L+
Sbjct: 56  SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 351
             +         +L FL L  N  K        +L         +LT L  + +      
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYK--------TLGET--SLFSHLTKLQILRVGNMDTF 162

Query: 352 GPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLL 410
             I  + F  L  L+ L+I  +++    P     +                         
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ------------------------ 198

Query: 411 NGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 470
                        +SHLIL        + + +   + ++ L+L +  L            
Sbjct: 199 ------------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL------------ 234

Query: 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP 530
                 + S L              G+  +                 + ++   L   + 
Sbjct: 235 ---DTFHFSEL------------STGETNS--------LIKKFTFRNVKITDESLF-QVM 270

Query: 531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
             +  ++ +  L  S N L  +    F  L  ++ + L  N  +
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 75/333 (22%)

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHI 343
             S+  L   IP  L      ++ L LSNN +          +S      L     L  +
Sbjct: 37  KGSSGSLN-SIPSGL---TEAVKSLDLSNNRIT--------YIS---NSDLQRCVNLQAL 81

Query: 344 IMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK 402
           ++  N +   I  + F  L SL+ LD+S N +S    S F PLS              L 
Sbjct: 82  VLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-------------SLT 127

Query: 403 R-DLSYNLLNGSIPD--WIGELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNSL 458
             +L  N    ++ +      L++L  L +G+ +   ++  +    L  L+ L++  + L
Sbjct: 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 459 HGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS 513
             S  P    +    + L         L             +               V S
Sbjct: 187 Q-SYEPKSLKSIQNVSHLILHMKQHILL------------LEIFV-----------DVTS 222

Query: 514 LLSGLYLSCNKLIGHIPPQI--------GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIES 565
            +  L L    L      ++              + + ++  +L   +    + +  +  
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLE 281

Query: 566 LDLSYNKLNGKIPHQLVE-LKTLEVFSVAYNNL 597
           L+ S N+L   +P  + + L +L+   +  N  
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 50/311 (16%), Positives = 98/311 (31%), Gaps = 65/311 (20%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
            +++SL+L+ N +   I   +     +L+ L +  N I+                 T++ 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-----------------TIEE 93

Query: 81  REFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKI 132
             F S  +LE LD+SYN +          L     L L  N ++   +L      S L  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTK 150

Query: 133 FHAKNNQMNAEITESHSLTAPNF----QLQSLSLS----SSYGDGVTFPKFLYHQHDLEY 184
                       T    +   +F     L+ L +      SY         L    ++ +
Sbjct: 151 LQILRVGNMDTFT---KIQRKDFAGLTFLEELEIDASDLQSYEPKS-----LKSIQNVSH 202

Query: 185 VRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGH 244
           + L   +         ++  + +  L L            + +     +     N++   
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLEL--------RDTDLDTFHFSELSTGETNSLIK- 252

Query: 245 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 304
                     +     I+  +L   +      +  L  L+ S NQL   +P+ +     +
Sbjct: 253 --------KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302

Query: 305 LQFLMLSNNSL 315
           LQ + L  N  
Sbjct: 303 LQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 55/328 (16%), Positives = 99/328 (30%), Gaps = 79/328 (24%)

Query: 86  FNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEP-LFNHSRLKIFHAK 136
              ++ LD+S N+I           V  Q L L+ N      ++E   F+          
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSS--------- 98

Query: 137 NNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEF 196
                        L      L+ L LS +                     LS++      
Sbjct: 99  -------------LG----SLEHLDLSYN--------------------YLSNL------ 115

Query: 197 PNWLLENNTKLATLFLVNDSL-----AGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGD 251
            +   +  + L  L L+ +          F        +L IL + N +    I  +   
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLF----SHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311
            L  L    I  + L    P S  +++ +  L L   Q    + E       +++ L L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD 371
           +  L        + LS      L       ++ + +  L   +     Q+  L  L+ S 
Sbjct: 231 DTDLD---TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 372 NNISGSLPSCFHPL-SIEQVHLSKNMLH 398
           N +       F  L S++++ L  N   
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 47/249 (18%)

Query: 363 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
           +++ LD+S+N I+    S      +++ + L+ N +       +  +  +         L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-----NTIEEDSFSS--------L 99

Query: 422 SQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIPP--CFDNTTLYESYNNS 478
             L HL L +N L   +     + L+ L  L+L  N    ++     F + T        
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTK----LQI 153

Query: 479 SSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLT 537
             +      +      + DF             L+ L  L +  +  +    P+   ++ 
Sbjct: 154 LRVGNMDTFTKI---QRKDFAG-----------LTFLEELEIDASD-LQSYEPKSLKSIQ 198

Query: 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG----KIPH----QLVELKTLEV 589
            +  L L       L+         +E L+L    L+     ++       L++  T   
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 590 FSVAYNNLS 598
             +   +L 
Sbjct: 259 VKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 31/188 (16%)

Query: 2   LNLSGNSFNNTILSSL-----THLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN 56
           L+LS N      LS+L       LSSL  LNL GN  +   +   F  L  L+ L +G  
Sbjct: 105 LDLSYNY-----LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 57  K---------IDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI-------- 99
                            +EL +D +  + + + +   S  N+  L +   +         
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 100 DNLVVPQELRLSDNHFRIP--ISLEPLFNHSRLKIFHAKNNQMNAE-ITESHSLTAPNFQ 156
           D     + L L D          L     +S +K F  +N ++  E + +   L      
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

Query: 157 LQSLSLSS 164
           L  L  S 
Sbjct: 279 LLELEFSR 286

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 63/340 (18%), Positives = 112/340 (32%), Gaps = 100/340 (29%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           +  +   +   +P     +  +    N+  N +      +F ++  L++L L  N +  +
Sbjct: 59  VVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-Q 113

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353
           I      G  +L  L L +N L          +     G    L+ L  + +  N +E  
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT--------VIP---SGAFEYLSKLRELWLRNNPIES- 161

Query: 354 IPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412
           IP   F ++ SL  LD+ +      +                                 G
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISE---------------------------GAFEG 194

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY 472
                   L  L +L LG  N++ ++P  L  L  L+ L++S N     I P        
Sbjct: 195 --------LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRP-------- 235

Query: 473 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ 532
                                  G F             LS L  L++  ++ +  I   
Sbjct: 236 -----------------------GSFHG-----------LSSLKKLWVMNSQ-VSLIERN 260

Query: 533 -IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
               L  +  LNL++NNL+ L    F+ L+++  L L +N
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 46/243 (18%)

Query: 363 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
           + + L++ +NNI       F  L  +E + L +N +     R +     NG        L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNG--------L 122

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLY-ESY 475
           + L+ L L  N L          L++L+ L L NN +  SIP   F+       L     
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

Query: 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 535
                +             +G F             L  L  L L    +     P +  
Sbjct: 182 KKLEYI------------SEGAFEG-----------LFNLKYLNLGMCNI--KDMPNLTP 216

Query: 536 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 595
           L  ++ L +S N+   + P +F  L  ++ L +  ++++    +    L +L   ++A+N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 596 NLS 598
           NLS
Sbjct: 277 NLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSN 287
             L  L++ +N +   IP    + L  L    +  N +  SIPS +F  +  L  LDL  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 288 -NQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLG 335
             +L   I E    G  NL++L L   ++K           E L ++ N      PG   
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSK 394
            L+ L  + +  + +       F  L SL  L+++ NN+S      F PL  + ++HL  
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 395 NMLH 398
           N  +
Sbjct: 300 NPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 55/314 (17%), Positives = 93/314 (29%), Gaps = 91/314 (28%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           LNL  N+       +  HL  L  L L  NS+   I+V  F+ L  L  L++ +N +   
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-- 136

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                           +    F+  + L  L +  N I+         +    F    SL
Sbjct: 137 ---------------VIPSGAFEYLSKLRELWLRNNPIE--------SIPSYAFNRVPSL 173

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
             L                         L     +L+ +S  +                +
Sbjct: 174 MRL------------------------DLGELK-KLEYISEGA-----------FEGLFN 197

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
           L+Y+ L    +  + PN  L     L  L +  +          H    L  L + N+ +
Sbjct: 198 LKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 301
              I                          ++F  +  L  L+L++N L+  +P  L   
Sbjct: 255 S-LIE------------------------RNAFDGLASLVELNLAHNNLS-SLPHDLFTP 288

Query: 302 CVNLQFLMLSNNSL 315
              L  L L +N  
Sbjct: 289 LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 516 SGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
               + C +  +  +P  I   +  + LNL  NN+  +   TF +L H+E L L  N + 
Sbjct: 55  QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 575 GKIPHQLVELKTLEVFSVAYNNLS 598
                    L +L    +  N L+
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 59/301 (19%), Positives = 92/301 (30%), Gaps = 75/301 (24%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
              L+L +N+L   +P  +      L  L LS+N L         S  G         T 
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL---------SFKGCCSQSDFGTTS 79

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC--FHPLSIEQVHLSKNML 397
           L ++ +  N +   +   F  L  L+ LD   +N+   +     F  L            
Sbjct: 80  LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL------------ 125

Query: 398 HRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNN-LEGEVPVQLCELNQLQLLDLSN 455
            R L   D+S+     +       LS L  L +  N+  E  +P    EL  L  LDLS 
Sbjct: 126 -RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 515
             L   + P                                 F +           LS L
Sbjct: 185 CQLE-QLSP-------------------------------TAFNS-----------LSSL 201

Query: 516 SGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNL-KHIESLDLSYNKL 573
             L +S N     +       L  +Q L+ S N++         +    +  L+L+ N  
Sbjct: 202 QVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 574 N 574
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 44/244 (18%)

Query: 363 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 421
           S   L++  N +       F  L  + ++ LS N L  +           G         
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---GCCSQSDFG--------T 77

Query: 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC--FDN----TTLYESY 475
           + L +L L  N +   +      L QL+ LD  +++L   +     F +      L  S+
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 135

Query: 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-G 534
            ++                 G F             LS L  L ++ N    +  P I  
Sbjct: 136 THTRVA------------FNGIFNG-----------LSSLEVLKMAGNSFQENFLPDIFT 172

Query: 535 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 594
            L  +  L+LS   L  L P+ F++L  ++ L++S+N            L +L+V   + 
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 595 NNLS 598
           N++ 
Sbjct: 233 NHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 21/223 (9%)

Query: 182 LEYVRLSHIKMN-GEFPNWLLENNTKLATLFLVN---DSLAGPFWLPIHSHKRLGILDIS 237
           L  + LS   ++     +      T L  L L      +++  F       ++L  LD  
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQLEHLDFQ 109

Query: 238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 297
           ++N++      +   L +L   +IS      +    F  +  L++L ++ N         
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 298 LAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE 357
           +     NL FL LS   L++   L+  + +         L+ L  + M  N+        
Sbjct: 170 IFTELRNLTFLDLSQCQLEQ---LSPTAFNS--------LSSLQVLNMSHNNFFSLDTFP 218

Query: 358 FCQLYSLQILDISDNNISGSLPSCFHPL--SIEQVHLSKNMLH 398
           +  L SLQ+LD S N+I  S          S+  ++L++N   
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 50/302 (16%), Positives = 86/302 (28%), Gaps = 76/302 (25%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           SS   L L  N L+ S+    FD L  L +L +  N +                      
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK---------------GCCS 71

Query: 81  REFDSFNNLEVLDMSYNKI-------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIF 133
           +      +L+ LD+S+N +         L   + L    ++ +         +   L   
Sbjct: 72  QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 134 HAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 193
              +                    +                       LE ++++     
Sbjct: 132 DISHT-----------------HTRVAF-----------NGIFNGLSSLEVLKMAG---- 159

Query: 194 GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253
               N   EN         + D             + L  LD+S   +   +     + L
Sbjct: 160 ----NSFQEN--------FLPDIFTEL--------RNLTFLDLSQCQLE-QLSPTAFNSL 198

Query: 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313
            SL V N+S N         +  +  LQ+LD S N +     + L     +L FL L+ N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 314 SL 315
             
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 24/229 (10%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLE-GSIDVKEFDSLRDLEELDIGENKI-- 58
           L L  N   +        L+ L  L+L+ N L       +       L+ LD+  N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 59  --DKFVVS---KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVP 105
               F+     + L    +  K   +   F S  NL  LD+S+           + L   
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 106 QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITES--HSLTAPNFQLQSLSLS 163
           + L+++ N F+     +       L        Q+  +++ +  +SL+     LQ L++S
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLS----SLQVLNMS 207

Query: 164 SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFL 212
            +    +         + L+ +  S   +       L    + LA L L
Sbjct: 208 HNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 20/179 (11%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+LS N    T+ S+   L  L  L+   ++L+   +   F SLR+L  LDI        
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVP 105
                      + L +    F+       F    NL  LD+S  ++        ++L   
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 106 QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS 164
           Q L +S N+F   +   P    + L++     N +    ++   L      L  L+L+ 
Sbjct: 202 QVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L++S              LSSL  L + GNS + +     F  LR+L  LD+ + ++++ 
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------- 105
             +        + L +    F  +LD   +   N+L+VLD S N I              
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 106 -QELRLSDNHFR 116
              L L+ N F 
Sbjct: 250 LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 516 SGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           SG  + CN   +  +P  I   +    L L  N L  L    F  L  +  L LS N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 575 GK--IPHQLVELKTLEVFSVAYNNLS 598
            K           +L+   +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 7e-21
 Identities = 64/352 (18%), Positives = 114/352 (32%), Gaps = 80/352 (22%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
              +      L  E+P+ ++    N + L L  N ++    +  NS        L +L  
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQI---IKVNSFKH-----LRHLEI 92

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLH 398
           L    +  NH+       F  L +L  L++ DN ++      F  L  ++++ L  N + 
Sbjct: 93  LQ---LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNS 457
                 +     N         +  L  L LG       +       L+ L+ L+L+  +
Sbjct: 150 S-----IPSYAFNR--------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
           L   IP                                                L  L  
Sbjct: 197 LR-EIPN-LTP-------------------------------------------LIKLDE 211

Query: 518 LYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576
           L LS N  +  I P     L  +Q L +  + +  +  + F NL+ +  ++L++N L   
Sbjct: 212 LDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 577 IPHQLVE-LKTLEVFSVAYNNLS-GEILEWTAQFATFNKSSYEGNTFLCGLP 626
           +PH L   L  LE   + +N  +    + W + +      S       C  P
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 5e-20
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 30/243 (12%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           +     N+R  +P  I     +  + N+  N +     +SF +++ L++L LS N +   
Sbjct: 48  VICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-T 102

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353
           I      G  NL  L L +N L         ++     G    L+ L  + +  N +E  
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT--------TIP---NGAFVYLSKLKELWLRNNPIES- 150

Query: 354 IPVE-FCQLYSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHR--------QLK 402
           IP   F ++ SL+ LD+ +      +    F  L ++  ++L+   L          +L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210

Query: 403 R-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
             DLS N L+   P     L  L  L +  + ++         L  L  ++L++N+L   
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 462 IPP 464
           +P 
Sbjct: 270 LPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLS-NN 288
            L  L++ +N +   IP      L  L    +  N ++     +F  +  L+ LDL    
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNL 337
           +L+  I E    G  NL++L L+  +L+           + L L+ N LS   PG    L
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 338 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNM 396
             L  + M ++ ++      F  L SL  ++++ NN++      F PL  +E++HL  N 
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 397 LH 398
            +
Sbjct: 291 WN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 57/323 (17%), Positives = 101/323 (31%), Gaps = 109/323 (33%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           LNL  N      ++S  HL  L  L L+ N +  +I++  F+ L +L  L++ +N++   
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-- 125

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSD- 112
                          T+    F   + L+ L +  N I        + +   + L L + 
Sbjct: 126 ---------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 113 NHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTF 172
                 IS       S L+  +     +  EI     L     +L  L LS +       
Sbjct: 171 KRLSY-ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLI----KLDELDLSGN------- 217

Query: 173 PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLG 232
                         LS I+  G F                                  L 
Sbjct: 218 -------------HLSAIR-PGSFQGL-----------------------------MHLQ 234

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
            L +  + I+  I                          ++F N++ L  ++L++N LT 
Sbjct: 235 KLWMIQSQIQ-VIE------------------------RNAFDNLQSLVEINLAHNNLT- 268

Query: 293 EIPEHLAVGCVNLQFLMLSNNSL 315
            +P  L     +L+ + L +N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 34/160 (21%), Positives = 49/160 (30%), Gaps = 35/160 (21%)

Query: 446 NQLQLLDLSNNSLHGSIPPCFDNTT--LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503
           NQ   +     +L   +P      T  L    N    +                F     
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQII------------KVNSFKH--- 86

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562
                   L  L  L LS N  I  I       L  + TL L  N LT +    F  L  
Sbjct: 87  --------LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 563 IESLDLSYNKLNGKIP----HQLVELKTLEVFSVAYNNLS 598
           ++ L L  N +   IP    +++  L+ L++       LS
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE--LKRLS 174

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 62/295 (21%), Positives = 90/295 (30%), Gaps = 81/295 (27%)

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
                  L   +P  +       Q + L  N +     +   S          NLT L  
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISH---VPAASFRA-----CRNLTILW- 62

Query: 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQL 401
             +  N L       F  L  L+ LD+SDN    S+    FH L              +L
Sbjct: 63  --LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-------------RL 107

Query: 402 KR-DLSYNLLNGSIP-DWIGELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSL 458
               L    L   +       L+ L +L L  N L+  +P      L  L  L L  N +
Sbjct: 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

Query: 459 HGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517
             S+P   F                                             L  L  
Sbjct: 166 S-SVPERAFRG-------------------------------------------LHSLDR 181

Query: 518 LYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
           L L  N+ + H+ P    +L R+ TL L  NNL+ L     + L+ ++ L L+ N
Sbjct: 182 LLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 28/228 (12%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           + +  N I  H+P        +L +  +  N L     ++F  +  L+ LDLS+N     
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353
           +      G   L  L L    L+         L    PG    L  L ++ + +N L+  
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ--------ELG---PGLFRGLAALQYLYLQDNALQA- 143

Query: 354 IPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLN 411
           +P + F  L +L  L +  N IS      F  L S++++ L +N +       +  +   
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-----AHVHPHAFR 198

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459
                    L +L  L L  NNL       L  L  LQ L L++N   
Sbjct: 199 D--------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 46/201 (22%), Positives = 68/201 (33%), Gaps = 30/201 (14%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
            L  N ++            L+ L L  N L          L  L+ LDLS+N+   S+ 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 464 P-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
           P  F       TL+        L              G F             L+ L  L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQEL------------GPGLFRG-----------LAALQYL 134

Query: 519 YLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           YL  N  +  +P     +L  +  L L  N ++ +    F  L  ++ L L  N++    
Sbjct: 135 YLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 578 PHQLVELKTLEVFSVAYNNLS 598
           PH   +L  L    +  NNLS
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L L  N       ++ T L+ L  L+L+ N+   S+D   F  L  L  L +    +   
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 59  -----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVP 105
                      + LYL D   +  L    F    NL  L +  N+I          L   
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 106 QELRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLS 163
             L L  N       + P  F    RL   +   N ++          AP   LQ L L+
Sbjct: 180 DRLLLHQNRVA---HVHPHAFRDLGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLN 233

Query: 164 S 164
            
Sbjct: 234 D 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 42/244 (17%), Positives = 70/244 (28%), Gaps = 51/244 (20%)

Query: 86  FNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKN 137
               + + +  N+I                L L  N     I        + L+     +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 138 NQMNAEITES--HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE 195
           N     +  +  H L     +L +L L                        L  +     
Sbjct: 90  NAQLRSVDPATFHGLG----RLHTLHLDRC--------------------GLQEL----- 120

Query: 196 FPNWLLENNTKLATLFLVNDSL----AGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGD 251
               L      L  L+L +++L       F         L  L +  N I   +P     
Sbjct: 121 -GPGLFRGLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNRIS-SVPERAFR 174

Query: 252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311
            L SL    +  N +    P +F ++  L  L L  N L+  +P         LQ+L L+
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

Query: 312 NNSL 315
           +N  
Sbjct: 234 DNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 35/186 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           + L GN  ++   +S     +L  L L+ N L   ID   F  L  LE+LD+ +N   + 
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 62  VVS---------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVV 104
           V             L+LD  G +  L    F     L+ L +  N +         +L  
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 105 PQELRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQMNAEITESHSLTAPNF----QLQ 158
              L L  N      S+    F     L       N++         +    F    +L 
Sbjct: 155 LTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRV-------AHVHPHAFRDLGRLM 204

Query: 159 SLSLSS 164
           +L L +
Sbjct: 205 TLYLFA 210

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 58/385 (15%), Positives = 110/385 (28%), Gaps = 75/385 (19%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
           +           I  E    L +L   +   +++  +  +    +  L  L  ++N +T 
Sbjct: 24  VAAAFEMQATDTISEEQ---LATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT- 77

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLK----------EGLYLTNNSLSGNIPGWLGNLTWLIH 342
            +         NL +L   +N L             L    N L+         LT+L  
Sbjct: 78  TLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN- 133

Query: 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML----- 397
                N L     ++      L  LD   N     L        +  +  S N +     
Sbjct: 134 --CARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITELDV 187

Query: 398 --HRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 454
             ++ L R +   N +   +   + +  QL+ L    N L     + +  L QL   D S
Sbjct: 188 SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCS 241

Query: 455 NNSLHGSIPPCFDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS 513
            N L           TTL+    +   +D                            +  
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEID----------------------------LTH 273

Query: 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573
               +Y             + + T++  L+     +T L     S    +  L L+  +L
Sbjct: 274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTEL 330

Query: 574 NGKIPHQLVELKTLEVFSVAYNNLS 598
             ++   +     L+  S    ++ 
Sbjct: 331 T-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 74/482 (15%), Positives = 136/482 (28%), Gaps = 116/482 (24%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
              +      T   S   L++L SL+ + +S+    D+   + L  L +L    N I   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITTL 79

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-----QELRLSDNHFR 116
                               +     NL  L    NK+ NL V        L    N   
Sbjct: 80  --------------------DLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK-- 117

Query: 117 IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL 176
             ++   +  +  L   +   N                  L  + +S             
Sbjct: 118 --LTKLDVSQNPLLTYLNCARN-----------------TLTEIDVS------------- 145

Query: 177 YHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
            H   L  +     K   +     +   T+L TL    + +     L +  +K L  L+ 
Sbjct: 146 -HNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
             NNI   + +        L   + S N L   I      +  L   D S N LT E+  
Sbjct: 199 DTNNIT-KLDLNQ---NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDV 250

Query: 297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV 356
                   L  L      L E + LT+N+           L +                +
Sbjct: 251 S---TLSKLTTLHCIQTDLLE-IDLTHNT----------QLIYFQA-----EGCRKIKEL 291

Query: 357 EFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 416
           +      L +LD     I+  L    +P  +  ++L+   L                +  
Sbjct: 292 DVTHNTQLYLLDCQAAGIT-ELDLSQNP-KLVYLYLNNTELT--------------ELD- 334

Query: 417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYN 476
            +   ++L  L   + +++ +    + ++  L     +             N +L  + +
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 477 NS 478
             
Sbjct: 392 PD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 70/415 (16%), Positives = 134/415 (32%), Gaps = 57/415 (13%)

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
            E    L +L   N S+       I     L  L  ++NNI   + +       +L    
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLDLSQ---NTNLTYLA 91

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE--- 317
              N L  ++      +  L  L+   N+LT ++          L +L  + N+L E   
Sbjct: 92  CDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVS---QNPLLTYLNCARNTLTEIDV 144

Query: 318 -------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 370
                   L    N     +   +   T L  +    N +     ++  Q   L  L+  
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCD 199

Query: 371 DNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
            NNI+  L             L++N+    L  D S N L   I   +  L+QL++    
Sbjct: 200 TNNIT-KLD------------LNQNIQLTFL--DCSSNKLT-EID--VTPLTQLTYFDCS 241

Query: 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFF 490
            N L     + +  L++L  L      L   I     NT L           ++ +++  
Sbjct: 242 VNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTH-NTQLIYFQAEGCRKIKELDVTHN 296

Query: 491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550
            +    D     I  +   +    L  LYL+  +L   +   + + T++++L+    ++ 
Sbjct: 297 TQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT 605
               S+   +  + +   +  +        L         S    +  G  +   
Sbjct: 353 DF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 69/510 (13%), Positives = 134/510 (26%), Gaps = 120/510 (23%)

Query: 66  ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLF 125
              +         D    +    L  LD   + I                     +  + 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-------------------DMTGIE 61

Query: 126 NHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYV 185
             + L      +N                  + +L LS                 +L Y+
Sbjct: 62  KLTGLTKLICTSN-----------------NITTLDLS--------------QNTNLTYL 90

Query: 186 RLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHI 245
                K+        +   TKL  L    + L     L +  +  L  L+ + N +   I
Sbjct: 91  ACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTLT-EI 142

Query: 246 PVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNL 305
            V        L   +  +N     +         L  LD S N++T             L
Sbjct: 143 DVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQN----KLL 193

Query: 306 QFLMLSNNSLK----------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 355
             L    N++             L  ++N L+  I   +  LT L +     N L     
Sbjct: 194 NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---E 247

Query: 356 VEFCQLYSLQILDISDNNISGSLP----------SCFHPLSIEQVHLSKNMLHRQLKRDL 405
           ++   L  L  L     ++   +                  I+++ ++ N     L  D 
Sbjct: 248 LDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL--DC 304

Query: 406 SYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465
               +   +   + +  +L +L L +  L     + +    +L+ L   N  +       
Sbjct: 305 QAAGIT-ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHI-QDFSSV 357

Query: 466 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL 525
                L  ++                        T     +    +   +S   L     
Sbjct: 358 GKIPALNNNFEAEGQT-----------------ITMPKETLTNNSLTIAVSPDLLDQFGN 400

Query: 526 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPS 555
             +I P  G +    T  +++ NL+   P+
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 66/340 (19%), Positives = 106/340 (31%), Gaps = 76/340 (22%)

Query: 251 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310
           D   S       M A D     S   +  L  LD  N+ +T ++          L  L+ 
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 370
           ++N++              +   L   T L ++    N L     ++   L  L  L+  
Sbjct: 72  TSNNITT------------LD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCD 114

Query: 371 DNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
            N ++             ++ +S+N L   L  + + N L   I   +   +QL+ L   
Sbjct: 115 TNKLT-------------KLDVSQNPLLTYL--NCARNTLT-EID--VSHNTQLTELDCH 156

Query: 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN-TTLYESYNNSSSLDEKFEISF 489
            N    ++   +    QL  LD S N +             L    NN + LD       
Sbjct: 157 LNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQ---- 210

Query: 490 FIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 549
                                    L+ L  S NKL   I   +  LT++   + S N L
Sbjct: 211 ----------------------NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245

Query: 550 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 589
           T L  ST S L    +L      L         +L   + 
Sbjct: 246 TELDVSTLSKL---TTLHCIQTDLLEIDLTHNTQLIYFQA 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 57/340 (16%), Positives = 98/340 (28%), Gaps = 79/340 (23%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
            LN + N+     +S  T    L  L+ + N     I   +      L  LD   NKI +
Sbjct: 131 YLNCARNTLTEIDVSHNT---QLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITE 184

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-----QELRLSDNHF 115
             VS+                       L  L+   N I  L +        L  S N  
Sbjct: 185 LDVSQ--------------------NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK- 223

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESH-----SLTAPNFQLQSLSLSSSYGDGV 170
              ++   +   ++L  F    N +  E+  S      +L      L  + L+ +     
Sbjct: 224 ---LTEIDVTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNT---- 275

Query: 171 TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKR 230
                      L Y +    +   E     + +NT+L  L      +     L +  + +
Sbjct: 276 ----------QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITE---LDLSQNPK 319

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
           L  L ++N  +   + V        L   +     +      S G +  L     +  Q 
Sbjct: 320 LVYLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

Query: 291 TGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNI 330
                         +    L+NNSL   +        GN 
Sbjct: 374 I------------TMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 17/178 (9%)

Query: 424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT---TLYESYNNSSS 480
            +  +     ++    +   +L  L  LD  N+S+   +      T    L  + NN ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNITT 78

Query: 481 LDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQ 540
           LD    +S           +  +  +     L+ L+ L    NKL   +   +     + 
Sbjct: 79  LD----LSQNTNLTYLACDSNKLTNLDVTP-LTKLTYLNCDTNKLT-KLD--VSQNPLLT 130

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
            LN + N LT +     S+   +  LD   NK   K+   +     L     ++N ++
Sbjct: 131 YLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 59/293 (20%), Positives = 93/293 (31%), Gaps = 62/293 (21%)

Query: 181 DLEYVRLSHIKMNGEFPNWLLE--NNTKLATLFLVNDSLAGPFWLPIH--SHKRLGILDI 236
            L+ + +   ++        L     + L  L L N  + G    P+   +   L IL++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 237 SNNNIRG---HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
            N +       +      + P L V +I+                 L  LDLS+N   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 294 IPEHLAV---GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 350
                A+       LQ L L N  +         + SG                      
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGM--------ETPSGVCSALAAARV------------ 228

Query: 351 EGPIPVEFCQLYSLQILDISDNNISGSLP--SCFHPLSIEQVHLSKNMLHRQLKRDLSYN 408
                        LQ LD+S N++  +    SC  P  +  ++LS   L           
Sbjct: 229 ------------QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---------- 266

Query: 409 LLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
                +P  +   ++LS L L +N L+   P    EL Q+  L L  N    S
Sbjct: 267 ----QVPKGL--PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 5e-16
 Identities = 65/370 (17%), Positives = 104/370 (28%), Gaps = 92/370 (24%)

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNA-LDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
           S  N  G   VE+     SL      ++   D    +       L+ L +   ++   I 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 355
                        +L  + L+E L L N  ++G  P  L   T                 
Sbjct: 86  FGA--------LRVLGISGLQE-LTLENLEVTGTAPPPLLEATGP--------------- 121

Query: 356 VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSI 414
                   L IL++ + + +              +   +  L   LK   ++        
Sbjct: 122 -------DLNILNLRNVSWATRDAW---------LAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 415 PDWIGELSQLSHLILGHNNLEGEVPV----QLCELNQLQLLDLSNNSLHGSIPPCFDNTT 470
            + +     LS L L  N   GE  +       +   LQ+L L N  +      C     
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP 530
                                                       L GL LS N L     
Sbjct: 226 A----------------------------------------RVQLQGLDLSHNSLRDAAG 245

Query: 531 PQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 589
                  +++ +LNLS+  L  +     + L     LDLSYN+L+   P    EL  +  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGN 300

Query: 590 FSVAYNNLSG 599
            S+  N    
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 51/305 (16%), Positives = 81/305 (26%), Gaps = 55/305 (18%)

Query: 106 QELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSS 165
           + L    +          +     LK    +  ++ + I            LQ L+L + 
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 166 YGDGVTFPKFLYHQH-DLEYVRLSHIKMNG------EFPNWLLENNTKLATLFLVNDSLA 218
              G   P  L     DL  + L ++          E   WL      L+     + + +
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 219 GPFWLPIHSHKRLGILDISNNNIRGHIPVE---IGDVLPSLYVFNISMN---ALDGSIPS 272
                       L  LD+S+N   G   +         P+L V  +         G   +
Sbjct: 166 CEQV---RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 273 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332
                  LQ LDLS+N L              L  L LS   L          +   +P 
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--------KQVPKGLPA 274

Query: 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL 392
                                          L +LD+S N +    PS      +  + L
Sbjct: 275 ------------------------------KLSVLDLSYNRLD-RNPSPDELPQVGNLSL 303

Query: 393 SKNML 397
             N  
Sbjct: 304 KGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 26/124 (20%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           + N    + +    +       L+ L+L+ NSL  +      D    L  L++    + +
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP------QELRLSDNH 114
             V K L                     L VLD+SYN++D    P        L L  N 
Sbjct: 268 --VPKGL------------------PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

Query: 115 FRIP 118
           F   
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 52/306 (16%), Positives = 84/306 (27%), Gaps = 83/306 (27%)

Query: 2   LNLSGNSFNNTILSSLTHL---SSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENK 57
           L +      + IL     +   S L+ L L    + G+      + +  DL  L++    
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 58  IDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------QELR 109
                               L   +      L+VL ++     N              L 
Sbjct: 133 W-------------ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 110 LSDNHFRIPISLEPLF---NHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSY 166
           LSDN       L           L++   +N  M        +L A   QLQ L LS   
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-- 237

Query: 167 GDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIH 226
                                               N+       L + + A     P  
Sbjct: 238 ------------------------------------NS-------LRDAAGAPSCDWP-- 252

Query: 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLS 286
              +L  L++S   ++  +P  +      L V ++S N LD   P S   +  +  L L 
Sbjct: 253 --SQLNSLNLSFTGLK-QVPKGL---PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLK 304

Query: 287 NNQLTG 292
            N    
Sbjct: 305 GNPFLD 310

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 26/201 (12%)

Query: 271 PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-------------E 317
             SF +   LQ+LDLS  ++   I +       +L  L+L+ N ++             +
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 318 GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL-EGPIPVEFCQLYSLQILDISDNNISG 376
            L     +L+      +G+L  L  + +  N +    +P  F  L +L+ LD+S N I  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ- 162

Query: 377 SLPS-CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE 435
           S+       L          M    L  DLS N +N  I     +  +L  L L  N L+
Sbjct: 163 SIYCTDLRVLH--------QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

Query: 436 GEVPVQLCELNQLQLLDLSNN 456
                    L  LQ + L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 46/228 (20%), Positives = 75/228 (32%), Gaps = 41/228 (17%)

Query: 363 SLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLH----------RQLKR-DLSYNLL 410
           S + LD+S N +       F     ++ + LS+  +             L    L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 411 NGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP--CFD 467
             S+       LS L  L+    NL       +  L  L+ L++++N +  S      F 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 468 N----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523
           N      L  S N   S+               D            ++  L   L LS N
Sbjct: 147 NLTNLEHLDLSSNKIQSI------------YCTDLR-------VLHQMPLLNLSLDLSLN 187

Query: 524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
             +  I P      R++ L L  N L  +    F  L  ++ + L  N
Sbjct: 188 P-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 24/182 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L+LS N   +    S      L+ L+L+   ++ +I+   + SL  L  L +  N I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 59  -----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------- 105
                      ++L   +T    +L+         L+ L++++N I +  +P        
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 106 -QELRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSL 162
            + L LS N  +   S+         ++ + +   +     +           +L+ L+L
Sbjct: 151 LEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 163 SS 164
            +
Sbjct: 208 DT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 448 LQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502
            + LDLS N L   +    F +      L  S     ++              G + +  
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI------------EDGAYQS-- 74

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLK 561
                    LS LS L L+ N +   +       L+ +Q L     NL  L      +LK
Sbjct: 75  ---------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 562 HIESLDLSYNKLNGKIP-----HQLVELKTLEVFSVAYNNLS 598
            ++ L++++N +            L  L+ L    ++ N + 
Sbjct: 125 TLKELNVAHNLIQ-SFKLPEYFSNLTNLEHL---DLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 55/305 (18%), Positives = 98/305 (32%), Gaps = 110/305 (36%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
            S ++L+L+ N L   +    F S  +L+ LD+   +I                  T++ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-----------------TIED 69

Query: 81  REFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKI 132
             + S ++L  L ++ N I          L   Q+L   + +     SLE          
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLEN-------FP 119

Query: 133 FHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKM 192
                            L      L+ L+++ +                     +   K+
Sbjct: 120 I--------------GHLK----TLKELNVAHN--------------------LIQSFKL 141

Query: 193 NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV 252
              F      N T L  L L                        S+N I+  I      V
Sbjct: 142 PEYF-----SNLTNLEHLDL------------------------SSNKIQ-SIYCTDLRV 171

Query: 253 LPSLYVFNISM----NALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 308
           L  + + N+S+    N ++   P +F  ++ L+ L L  NQL   +P+ +     +LQ +
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKI 229

Query: 309 MLSNN 313
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 537 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLEVFSV 592
              + L+LS+N L  L   +F +   ++ LDLS  ++   I       L  L TL +   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 593 AYNNLS 598
             N + 
Sbjct: 85  -GNPIQ 89

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 26/134 (19%)

Query: 2   LNLSGNSFNNTILSS--LTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI- 58
           L       N   L +  + HL +L+ LN+  N ++     + F +L +LE LD+  NKI 
Sbjct: 105 LVAVET--NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 59  -------DKFV----VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI-------- 99
                          ++  L L        +    F     L+ L +  N++        
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLKELALDTNQLKSVPDGIF 220

Query: 100 DNLVVPQELRLSDN 113
           D L   Q++ L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 33/190 (17%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
            LS NLL       +   ++L+ L L    L  ++ V    L  L  LDLS+N L  S+P
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLP 93

Query: 464 PCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
                    T L  S+N  +SL            P G               L  L  LY
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSL------------PLGALRG-----------LGELQELY 130

Query: 520 LSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
           L  N+L   +PP +     +++ L+L+ NNLT L     + L+++++L L  N L   IP
Sbjct: 131 LKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IP 188

Query: 579 HQLVELKTLE 588
                   L 
Sbjct: 189 KGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 18/171 (10%)

Query: 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285
             + RL  L++    +   + V     LP L   ++S N L  S+P     +  L +LD+
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107

Query: 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIM 345
           S N+LT  +P     G   LQ L L  N LK        +L    PG L     L  + +
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK--------TLP---PGLLTPTPKLEKLSL 155

Query: 346 PENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
             N+L   +P      L +L  L + +N++       F    +    L  N
Sbjct: 156 ANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 61/223 (27%)

Query: 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313
               + ++S N L     ++      L  L+L   +LT ++   +      L  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHN 87

Query: 314 SLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN 373
            L+                                     +P+    L +L +LD+S N 
Sbjct: 88  QLQS------------------------------------LPLLGQTLPALTVLDVSFNR 111

Query: 374 ISGSLPS-CFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWI-GELSQLSHLILG 430
           ++ SLP      L              +L+   L  N L  ++P  +     +L  L L 
Sbjct: 112 LT-SLPLGALRGLG-------------ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156

Query: 431 HNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIPP-CFDNTTL 471
           +NNL  E+P  L   L  L  L L  NSL+ +IP   F +  L
Sbjct: 157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 448 LQLLDLSNNSLHGSIPP-CFDNTT-LYESYNNSSSLDEKFEISFFIEGPQG---DFTTKN 502
              ++    +L  ++PP    +TT L+ S N   +      ++  +   +    +     
Sbjct: 12  HLEVNCDKRNL-TALPPDLPKDTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAE 66

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562
           +  +     L +L  L LS N+L   +P     L  +  L++S+N LT L       L  
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 563 IESLDLSYNKLNGKIPH----QLVELKTLEVFSVAYNNLS 598
           ++ L L  N+L   +P        +L+ L   S+A NNL+
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKL---SLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 24/156 (15%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L+LS N      L++L   + L  LNL+   L   + V    +L  L  LD+  N++   
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSL 92

Query: 59  ----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQ 106
                       L +       +L +        L+ L +  N++              +
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 107 ELRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQM 140
           +L L++N+      L   L N    L     + N +
Sbjct: 152 KLSLANNNLT---ELPAGLLNGLENLDTLLLQENSL 184

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 49/218 (22%)

Query: 363 SLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI-GE 420
             + LD+  N +S      FH L+ +  ++L+ N L               ++P  I  E
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--------------TLPAGIFKE 83

Query: 421 LSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIPP-CFDN----TTLYES 474
           L  L  L +  N L+  +P+ + + L  L  L L  N L  S+PP  FD+    T L   
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 475 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI- 533
           YN   SL            P+G F             L+ L  L L  N+L   +P    
Sbjct: 142 YNELQSL------------PKGVFDK-----------LTSLKELRLYNNQL-KRVPEGAF 177

Query: 534 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
             LT ++TL L  N L  +    F +L+ ++ L L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 46/217 (21%)

Query: 270 IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN 329
           IP+        + LDL +N+L+  +P         L+ L L++N L+        +L   
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ--------TLPAG 79

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPS-CFHPLSI 387
           I   L NL  L    + +N L+  +P+  F QL +L  L +  N +  SLP   F  L+ 
Sbjct: 80  IFKELKNLETL---WVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT- 133

Query: 388 EQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLCE- 444
                       +L    L YN L  S+P  +  +L+ L  L L +N L+  VP    + 
Sbjct: 134 ------------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDK 179

Query: 445 LNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYN 476
           L +L+ L L NN L   +P   FD+      L    N
Sbjct: 180 LTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 36/175 (20%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSL 481
           L L  N L          L +L+LL L++N L  ++P   F       TL+ + N   +L
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQ 540
                       P G F             L  L+ L L  N+ +  +PP++  +LT++ 
Sbjct: 101 ------------PIGVFDQ-----------LVNLAELRLDRNQ-LKSLPPRVFDSLTKLT 136

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLEVFS 591
            L+L YN L  L    F  L  ++ L L  N+L  ++P     +L ELKTL++ +
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLD 284
           H   +L +L +++N ++  +P  I   L +L    ++ N L  ++P   F  +  L  L 
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-------------EGLYLTNNSLSGNIP 331
           L  NQL   +P  +      L +L L  N L+             + L L NN L     
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 372
           G    LT L  + +  N L+      F  L  L++L + +N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 23/157 (14%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L+L  N  ++    +   L+ LR L LN N L+ ++    F  L++LE L + +NK+   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 59  -----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVP 105
                D+ V   EL LD    K +L  R FDS   L  L + YN++        D L   
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159

Query: 106 QELRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQM 140
           +ELRL +N  +    +    F+  + LK     NNQ+
Sbjct: 160 KELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 36/150 (24%)

Query: 448 LQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502
            + LDL +N L  S+P   F        LY + N   +L            P G F    
Sbjct: 39  TKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTL------------PAGIFKE-- 83

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLK 561
                    L  L  L+++ NKL   +P  +   L  +  L L  N L  L P  F +L 
Sbjct: 84  ---------LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 562 HIESLDLSYNKLNGKIPH----QLVELKTL 587
            +  L L YN+L   +P     +L  LK L
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 28/133 (21%)

Query: 2   LNLSGNSFNNTILSSL-----THLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN 56
           L ++ N      L +L       L +L  L L+ N L+ S+  + FDSL  L  L +G N
Sbjct: 90  LWVTDNK-----LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 57  KI--------DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------D 100
           ++        DK    KEL L +   K  +    FD    L+ L +  N++        D
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 101 NLVVPQELRLSDN 113
           +L   + L+L +N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 540 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN---GKIPHQLVELKTLEVFS 591
           + L+L  N L+ L    F  L  +  L L+ NKL      I  +L  L+TL V  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 71/442 (16%), Positives = 136/442 (30%), Gaps = 84/442 (19%)

Query: 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPI----HSHKRLGILDI 236
           D++ + +   +++      LL    +   + L +  L       I      +  L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 237 SNNNIRGHIPVEIGDVL----PSLYVFNISMNALD----GSIPSSFGNMKFLQLLDLSNN 288
            +N +       +   L      +   ++    L     G + S+   +  LQ L LS+N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLS----GNIPGWLGNLTWLIHII 344
            L     + L  G       +L      E L L   SLS      +   L        + 
Sbjct: 124 LLGDAGLQLLCEG-------LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 345 MPENHLEGPIPVEFCQL-----YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399
           +  N +        CQ        L+ L +    ++    +C     I    ++     R
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGI----VASKASLR 230

Query: 400 QLKRDLSYNLLNGS-----IPDWIGELSQLSHLILGHNNLEGEVPVQLCEL----NQLQL 450
           +L   L  N L         P  +   S+L  L +    +  +    LC +      L+ 
Sbjct: 231 EL--ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 451 LDLSNNSLHGS---------IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501
           L L+ N L            + P     +L+    +                    FT  
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS--------------------FTAA 328

Query: 502 NIAYIYQG-KVLSLLSGLYLSCNKLIGHIPPQIG-----NLTRIQTLNLSYNNLT----G 551
             ++          L  L +S N+L      ++        + ++ L L+  +++     
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388

Query: 552 LIPSTFSNLKHIESLDLSYNKL 573
            + +T      +  LDLS N L
Sbjct: 389 SLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 72/446 (16%), Positives = 139/446 (31%), Gaps = 85/446 (19%)

Query: 2   LNLSGNSFNNTILSSLTH-LSSLRSLNLNGNSLEGSIDVKEFDSL----RDLEELDIGEN 56
           L++     ++   + L   L   + + L+   L      K+  S       L EL++  N
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSN 66

Query: 57  KIDKFVVS-------------KELYLDDTGF--KGTLDIRE-FDSFNNLEVLDMSYNKID 100
           ++    V              ++L L +      G   +     +   L+ L +S N + 
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

Query: 101 NLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLT-APNFQLQS 159
           +  +              +    L    RL+    +   ++A   E  +         + 
Sbjct: 127 DAGLQL------------LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 160 LSLSSSY--GDGVT-FPKFLYHQHD-LEYVRLSHIKMNGEFPNWL---LENNTKLATLFL 212
           L++S++     GV    + L      LE ++L    +  +    L   + +   L  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 213 VNDSL--AGPFWL---PIHSHKRLGILDISNNNIRGHIPVEIGDVL---PSLYVFNISMN 264
            ++ L   G   L    +H   RL  L I    I      ++  VL    SL   +++ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 265 ALDGSIPSSFGNM-----KFLQLLDLSNNQLTGEIPEHLAVG---CVNLQFLMLSNNSLK 316
            L                  L+ L + +   T     H +        L  L +SNN L+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 317 ------------------EGLYLTNNSLS----GNIPGWLGNLTWLIHIIMPENHLEGPI 354
                               L+L +  +S     ++   L     L  + +  N L    
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414

Query: 355 PVEFCQL-----YSLQILDISDNNIS 375
            ++  +        L+ L + D   S
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 6e-11
 Identities = 74/425 (17%), Positives = 136/425 (32%), Gaps = 72/425 (16%)

Query: 88  NLEVLDMSYNKIDNLVVP---------QELRLSDNHFRIPISLEPLF----NHSRLKIFH 134
           +++ LD+   ++ +             Q +RL D         + +      +  L   +
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELN 62

Query: 135 AKNNQMNAEITE--SHSLTAPNFQLQSLSLSSSY--GDGVT-FPKFLYHQHDLEYVRLSH 189
            ++N++           L  P+ ++Q LSL +    G G       L     L+ + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 190 IKMNGE----FPNWLLENNTKLATLFLVNDSL----AGPFWLPIHSHKRLGILDISNNNI 241
             +           LL+   +L  L L   SL      P    + +      L +SNN+I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 242 RGHIPVEIGDVLP----SLYVFNISMNALD----GSIPSSFGNMKFLQLLDLSNNQLTGE 293
                  +   L      L    +    +       +     +   L+ L L +N+L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW------LGNLTWLIHIIMPE 347
                  G   L   +L  +S    L++    ++    G       L     L  + +  
Sbjct: 243 -------GMAELCPGLLHPSSRLRTLWIWECGITAK--GCGDLCRVLRAKESLKELSLAG 293

Query: 348 NHLEGPIPVEFCQL-----YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK 402
           N L        C+        L+ L +   + +    +C    S     L++N    +L 
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSS---VLAQNRFLLEL- 346

Query: 403 RDLSYNLLNGSIPDWIGEL-----SQLSHLILGHNNLEGEVPVQLCEL----NQLQLLDL 453
             +S N L  +    + +      S L  L L   ++       L       + L+ LDL
Sbjct: 347 -QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 454 SNNSL 458
           SNN L
Sbjct: 406 SNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 73/492 (14%), Positives = 143/492 (29%), Gaps = 109/492 (22%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEF-DSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLD 79
             ++SL++    L       E    L+  + + + +  +                    D
Sbjct: 3   LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGL--------------TEARCKD 47

Query: 80  IREFDSFN-NLEVLDMSYNKIDNLVVP-------------QELRLSDNHFR---IPISLE 122
           I      N  L  L++  N++ ++ V              Q+L L +         +   
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 123 PLFNHSRLKIFHAKNNQMNAEITE--SHSLTAPNFQLQSLSLSS---SYGDGVTFPKFLY 177
            L     L+  H  +N +     +     L  P  +L+ L L     S          L 
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 178 HQHDLEYVRLSHIKMNGE----FPNWLLENNTKLATLFLVNDSL----AGPFWLPIHSHK 229
            + D + + +S+  +N          L ++  +L  L L +  +           + S  
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 230 RLGILDISNNNIRG----HIPVEIGDVLPSLYVFNISMNALD----GSIPSSFGNMKFLQ 281
            L  L + +N +       +   +      L    I    +     G +       + L+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 282 LLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI 341
            L L+ N+L  E    L         L+     L+  L++ + S +        ++    
Sbjct: 288 ELSLAGNELGDEGARLLCET------LLEPGCQLES-LWVKSCSFTAACCSHFSSV---- 336

Query: 342 HIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS----------LPSCFHPLSIEQVH 391
              + +N               L  L IS+N +  +           P       +  + 
Sbjct: 337 ---LAQNR-------------FLLELQISNNRLEDAGVRELCQGLGQPGS----VLRVLW 376

Query: 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL-----N 446
           L+   +       L+  LL             L  L L +N L     +QL E       
Sbjct: 377 LADCDVSDSSCSSLAATLLA---------NHSLRELDLSNNCLGDAGILQLVESVRQPGC 427

Query: 447 QLQLLDLSNNSL 458
            L+ L L +   
Sbjct: 428 LLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 62/359 (17%), Positives = 114/359 (31%), Gaps = 73/359 (20%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
           +Q LD+   +L+      L       Q + L +        LT      +I   L     
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------LTEARCK-DISSALRVNPA 57

Query: 340 LIHIIMPENHLEGPIPVEFCQL-----YSLQILDISDNNIS----GSLPSCFHPL-SIEQ 389
           L  + +  N L         Q        +Q L + +  ++    G L S    L ++++
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 390 VHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL---- 445
           +HLS N+L     + L   LL+           +L  L L + +L       L  +    
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQ--------CRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 446 NQLQLLDLSNNSLHGS---------IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG 496
              + L +SNN ++ +                  L                         
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG------------------- 210

Query: 497 DFTTKNIAYIYQG-KVLSLLSGLYLSCNKL----IGHIPPQIGN-LTRIQTLNLSYNNLT 550
             T+ N   +       + L  L L  NKL    +  + P + +  +R++TL +    +T
Sbjct: 211 -VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 551 ----GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-----KTLEVFSVAYNNLSGE 600
               G +       + ++ L L+ N+L  +    L E        LE   V   + +  
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 65/379 (17%), Positives = 116/379 (30%), Gaps = 72/379 (18%)

Query: 2   LNLSGNSFNNT----ILSSLTHLSSLRSLNLNGNSLEGSIDVKEF-DSLRD----LEELD 52
           L+L            + S+L  L +L+ L+L+ N L G   ++   + L D    LE+L 
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 53  IGENKIDKFVVS------------KELYLDDTGF--KGTLDIREFDSFNN--LEVLDMSY 96
           +    +                  KEL + +      G   + +    +   LE L +  
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 97  NKIDNLVVP------------QELRLSDNHFR----IPISLEPLFNHSRLKIFHAKNNQM 140
             + +                +EL L  N         +    L   SRL+        +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 141 NAE--ITESHSLTAPNFQLQSLSLSSSY--GDGV-TFPKFLYHQH-DLEYVRLSHIKMNG 194
            A+        L A    L+ LSL+ +    +G     + L      LE + +       
Sbjct: 269 TAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 195 EFPNWL---LENNTKLATLFLVNDSLAGPFWLPI-----HSHKRLGILDISNNNIRGHIP 246
              +     L  N  L  L + N+ L       +          L +L +++ ++     
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387

Query: 247 VEIGDVL---PSLYVFNISMNALDGSIPSSFG-----NMKFLQLLDLSNNQLTGEIPEHL 298
             +   L    SL   ++S N L  +               L+ L L +   + E     
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE----- 442

Query: 299 AVGCVNLQFLMLSNNSLKE 317
                 LQ L     SL+ 
Sbjct: 443 --MEDRLQALEKDKPSLRV 459

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 46/254 (18%), Positives = 76/254 (29%), Gaps = 59/254 (23%)

Query: 363 SLQILDISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE 420
            +Q LDI    +S              + V L    L     +D+S  L           
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV--------- 54

Query: 421 LSQLSHLILGHNNLEGEVPVQLCEL-----NQLQLLDLSNNSLHGSIPPCFDNTTLYESY 475
              L+ L L  N L       + +       ++Q L L N  L G+         L  + 
Sbjct: 55  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA-----GCGVLSSTL 109

Query: 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 535
               +L ++  +S  + G  G               L LL    L               
Sbjct: 110 RTLPTL-QELHLSDNLLGDAG---------------LQLLCEGLLDPQ------------ 141

Query: 536 LTRIQTLNLSYNNLT----GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LK----T 586
             R++ L L Y +L+      + S        + L +S N +N      L + LK     
Sbjct: 142 -CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 587 LEVFSVAYNNLSGE 600
           LE   +    ++ +
Sbjct: 201 LEALKLESCGVTSD 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 36/318 (11%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
                + +   IP ++     +       +  L      +F     L+ +++S N +   
Sbjct: 14  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 294 IPEHLAVGCVNLQFLMLSN-NSLK-------------EGLYLTNNSLSGNIPGWLGNLTW 339
           I   +      L  + +   N+L              + L ++N  +         +   
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 340 LIHIIMPEN-HLEGPIPVEFCQL-YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN-- 395
            + + + +N ++       F  L +   IL ++ N I     S F+   +++++LS N  
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 396 ----------MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL 445
                          +  D+S   ++ S+P +   L  L  L         ++P  L +L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLPT-LEKL 245

Query: 446 NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAY 505
             L    L+  S   +        +      N S L ++ +      G +      N + 
Sbjct: 246 VALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESS 305

Query: 506 IYQGKVLSLLSGLYLSCN 523
             +G  ++     Y  CN
Sbjct: 306 YSRGFDMTYTEFDYDLCN 323

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 56/317 (17%), Positives = 93/317 (29%), Gaps = 89/317 (28%)

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
                +++T EIP  L     N   L      L+    +   + SG           L  
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLRV---IQKGAFSG--------FGDLEK 58

Query: 343 IIMPENHLEGPIPVE-FCQLYSLQILDISD-NNISGSLPSCFHPL-SIEQVHLSKNMLHR 399
           I + +N +   I  + F  L  L  + I   NN+    P  F  L +++ + +S   +  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK- 117

Query: 400 QLKRDLSYNLLNGSIPDWI-GELSQLSHLILGHNN----LEGEVPVQLCELNQLQLLDLS 454
                         +PD       Q   L +  N     +E    V L    +  +L L+
Sbjct: 118 -------------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLN 162

Query: 455 NNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL 514
            N +       F+ T L E                                         
Sbjct: 163 KNGIQEIHNSAFNGTQLDE----------------------------------------- 181

Query: 515 LSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573
              L LS N  +  +P  +    +    L++S   +  L      NLK + +      K 
Sbjct: 182 ---LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK- 237

Query: 574 NGKIP--HQLVELKTLE 588
             K+P   +LV L    
Sbjct: 238 --KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 40/248 (16%), Positives = 71/248 (28%), Gaps = 36/248 (14%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDI-GENKIDK 60
           L             + +    L  + ++ N +   I+   F +L  L E+ I   N +  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL- 93

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSD 112
                            ++   F +  NL+ L +S   I         + +    L + D
Sbjct: 94  ----------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 113 NHFRIPISLEPLFNHS-RLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVT 171
           N     I        S    I     N     I E H+      QL  L+LS +      
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNG----IQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231
                +       + +S  +++   P++ LEN  KL      N                L
Sbjct: 194 PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL----EKLVAL 248

Query: 232 GILDISNN 239
               ++  
Sbjct: 249 MEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 516 SGLYLSC-NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           S     C    +  IP  +        L      L  +    FS    +E +++S N + 
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 575 GKIP----HQLVELKTLEVFSVAYNNLS 598
             I       L +L  + +     NNL 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEK--ANNLL 93

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 45/319 (14%), Positives = 91/319 (28%), Gaps = 86/319 (26%)

Query: 22  SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR 81
           S R      + +   I     D  R+  EL     K+                   +   
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLR-----------------VIQKG 48

Query: 82  EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN 141
            F  F +LE +++S N +  ++                    L     ++I  A      
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEAD-------------VFSNLPKLHEIRIEKAN----- 90

Query: 142 AEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLL 201
                          L  ++           P+   +  +L+Y+ +S+  +    P+   
Sbjct: 91  --------------NLLYIN-----------PEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 202 ENNTKLATLFLV-NDSL----AGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSL 256
            ++ +   L +  N ++       F   +       IL ++ N I+  I     +     
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSF---VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180

Query: 257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN--- 313
            +     N L+      F       +LD+S  ++   +P +       L+     N    
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKL 239

Query: 314 -------SLKEGLYLTNNS 325
                  +L E   LT  S
Sbjct: 240 PTLEKLVALME-ASLTYPS 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 103/678 (15%), Positives = 191/678 (28%), Gaps = 219/678 (32%)

Query: 47  DLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDM-----SYNKIDN 101
           +  E       I        ++ D   F    D ++        V DM     S  +ID+
Sbjct: 10  ETGEHQYQYKDI------LSVFEDA--FVDNFDCKD--------VQDMPKSILSKEEIDH 53

Query: 102 LV-VPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN-----AEITESHSLTAPNF 155
           ++     +  +    R+  +L        ++ F  +  ++N     + I       +   
Sbjct: 54  IIMSKDAVSGTL---RLFWTLL-SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYV-RLSHIKMNGEFPNWLLE-NNTKLATLF-- 211
           ++        Y D   F K  Y+      V RL       +    LLE    K   +   
Sbjct: 110 RMYIEQRDRLYNDNQVFAK--YN------VSRLQPYL---KLRQALLELRPAKNVLIDGV 158

Query: 212 -------LVNDSLA----------GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLP 254
                  +  D               FWL       L            + P  + ++L 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLK---------NCNSPETVLEMLQ 203

Query: 255 SLYVFNISMNALDG-----SIPSSFGNMK-----FLQ-------LLDLSNNQLTGEIPEH 297
            L  + I  N         +I     +++      L+       LL L N Q   +    
Sbjct: 204 KLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNA 261

Query: 298 LAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE 357
             + C   + L+ +         +T+  LS              HI + ++H     P E
Sbjct: 262 FNLSC---KILLTTRFK-----QVTD-FLSAATTT---------HISL-DHHSMTLTPDE 302

Query: 358 FCQLYSLQILDISDNNISGSLPS--C-FHPLSI--------EQVHLSKNMLHRQLKR--- 403
              L   + LD         LP      +P  +        + +    N  H    +   
Sbjct: 303 VKSLLL-KYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 404 --DLSYNLLNG----------SI-PD--WIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
             + S N+L            S+ P    I     LS  ++  + ++ +V V + +L++ 
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLS--LIWFDVIKSDVMVVVNKLHKY 414

Query: 449 QLLDLSNN----SLHG----SIPPCFDNTTLY----ESYNNSSSLDEKFEISFFIEGPQG 496
            L++        S+            +   L+    + YN   + D              
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD------------SD 462

Query: 497 DFTTKNI-AYIY-----------QGKVLSLLSGLYLSC----NKLIGHIPPQIGNLTRIQ 540
           D     +  Y Y             + ++L   ++L       K+               
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-------- 514

Query: 541 TLNLSYNNLTGLIPSTFSNLK----HIESLDLSYNKLNG-------KIPHQLVELKTLEV 589
                  N +G I +T   LK    +I   D  Y +L         KI   L+  K  ++
Sbjct: 515 -------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 590 FSVAYNNLSGEILEWTAQ 607
             +A       I E   +
Sbjct: 568 LRIALMAEDEAIFEEAHK 585

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 62/221 (28%)

Query: 355 PVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI 414
            +   Q+ SL  + +++ N++           +  +  + N+  + L   ++        
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLTGIEYAHNI--KDL--TINNIHATNYN 82

Query: 415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYES 474
           P  I  LS L  L +   ++  +    L  L  L LLD+S+++   SI    +       
Sbjct: 83  P--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT------ 134

Query: 475 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIG 534
                                                L  ++ + LS N  I  I P + 
Sbjct: 135 -------------------------------------LPKVNSIDLSYNGAITDIMP-LK 156

Query: 535 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
            L  +++LN+ ++ +         +   +  L      + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 35/191 (18%)

Query: 411 NGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP--CFDN 468
           N +IPD         + +LG ++      +   ++N L  + L+N ++   +       N
Sbjct: 14  NVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHN 67

Query: 469 -TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 527
              L  +  ++++                      I+       LS L  L +    +  
Sbjct: 68  IKDLTINNIHATNY-------------------NPISG------LSNLERLRIMGKDVTS 102

Query: 528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
              P +  LT +  L++S++     I +  + L  + S+DLSYN     I   L  L  L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPEL 161

Query: 588 EVFSVAYNNLS 598
           +  ++ ++ + 
Sbjct: 162 KSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 18/157 (11%), Positives = 54/157 (34%), Gaps = 24/157 (15%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           + L+  +  +  L+ + +  +++ L +N        +      L +LE L I    +   
Sbjct: 49  ITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSD 103

Query: 62  VVS--------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK-------IDNLVVPQ 106
            +           L +  +    +  + + ++   +  +D+SYN        +  L   +
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162

Query: 107 ELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAE 143
            L +  +          + +  +L   +A +  +  +
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 572 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
             +  I  ++  L  +    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
             +  L I+N +   + P+     L +L    I    +      +   +  L LLD+S++
Sbjct: 66  HNIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348
                I   +      +             + L+ N    +I   L  L  L  + +  +
Sbjct: 123 AHDDSILTKIN-TLPKVNS-----------IDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

Query: 349 HLEGPIPVEFCQLYSLQILDISDNNISG 376
            +     +E      L  L      I G
Sbjct: 170 GVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 29/176 (16%)

Query: 273 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYL 321
           +   M  L  + L+N  +T ++   +     N++ L ++N               E L +
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATNYNPISGLSNLERLRI 95

Query: 322 TNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC 381
               ++ +    L  LT L  + +  +  +  I  +   L  +  +D+S N     +   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 382 FHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE 437
                ++ +++  + +H     D             I +  +L+ L      + G+
Sbjct: 156 KTLPELKSLNIQFDGVH-----DYRG----------IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 21/102 (20%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L++S ++ +++IL+ +  L  + S++L+ N      D+    +L +L+ L+I  + +  
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVH- 172

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 102
                             D R  + F  L  L      I   
Sbjct: 173 ------------------DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLK 561
           + A I + + ++ L+ + L+    +  +   I     I+ L ++  + T    +  S L 
Sbjct: 34  STANITEAQ-MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLS 88

Query: 562 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603
           ++E L +    +       L  L +L +  ++++     IL 
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVND 215
            L  ++L++     VT    + + H+++ + +++I      P   +   + L  L ++  
Sbjct: 45  SLTYITLANI---NVTDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGK 98

Query: 216 SLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 275
            +       +     L +LDIS++     I  +I   LP +   ++S N     I     
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLK 156

Query: 276 NMKFLQLLDLSNNQLTGEIP-EHLAVGCVNLQFLMLSNN 313
            +  L+ L++  + +      E        L  L   + 
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 39/219 (17%)

Query: 31  NSLEGSIDVKEF--DSLRDLEELDIGENKIDKFVVS-----KELYLDDTGFKGTLDIREF 83
             L+ S D       + +      +G++       +       + L +       D+   
Sbjct: 6   TGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGI 62

Query: 84  DSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM-NA 142
           +  +N++ L ++     N                     P+   S L+        + + 
Sbjct: 63  EYAHNIKDLTINNIHATN-------------------YNPISGLSNLERLRIMGKDVTSD 103

Query: 143 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLE 202
           +I     LT     L  L +S S  D     K +     +  + LS+     +     L+
Sbjct: 104 KIPNLSGLT----SLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMP--LK 156

Query: 203 NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
              +L +L +  D +    +  I    +L  L   +  I
Sbjct: 157 TLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 52/235 (22%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTG 292
           L +   ++R  IP      LP++    +S++     + S SF N+  +  +++ N +   
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
            I          L+FL + N  LK              P                     
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKM------------FPDLTK----------------- 125

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLN 411
                        IL+I+DN    S+P   F  L  E + L            L  N   
Sbjct: 126 -----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL-----------KLYNNGFT 169

Query: 412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE--LNQLQLLDLSNNSLHGSIPP 464
            S+  +    ++L  + L  N     +         +   LLD+S  S+  ++P 
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 64/279 (22%)

Query: 302 CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL 361
           C   +   ++   ++             IP    +   L    + E HL       F  L
Sbjct: 10  CHQEEDFRVTCKDIQR------------IPSLPPSTQTLK---LIETHLRTIPSHAFSNL 54

Query: 362 YSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 419
            ++  + +S +     L S  F+ L  +  + +      R L   +  + L         
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT---RNLTY-IDPDALKE------- 103

Query: 420 ELSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNSLHGSIPP-CFDN-----TTL 471
            L  L  L + +  L+   P   ++   +   +L++++N    SIP   F        TL
Sbjct: 104 -LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP 531
               N  +S+                F              + L  +YL+ NK +  I  
Sbjct: 162 KLYNNGFTSV------------QGYAFN------------GTKLDAVYLNKNKYLTVIDK 197

Query: 532 QI--GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 568
               G  +    L++S  ++T L      +LK + + + 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 39/256 (15%), Positives = 81/256 (31%), Gaps = 48/256 (18%)

Query: 359 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH----------RQLKR-DLSY 407
           C+ +  +   ++  +I   +PS   P S + + L +  L             + R  +S 
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 408 NLLNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSL-----HG 460
           ++    +       LS+++H+ + +      +     + L  L+ L + N  L       
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 461 SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 520
            +        L  + N          ++     P   F            + +    L L
Sbjct: 125 KVYSTDIFFILEITDNP--------YMTSI---PVNAFQ----------GLCNETLTLKL 163

Query: 521 SCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKH-IESLDLSYNKLN---G 575
             N     +     N T++  + L+ N  LT +    F  +      LD+S   +     
Sbjct: 164 YNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222

Query: 576 KIPHQLVELKTLEVFS 591
           K    L EL     ++
Sbjct: 223 KGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 32/166 (19%)

Query: 442 LCELNQLQLLDLSNNSLHG--SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499
            CE +Q +   ++   +    S+PP     TL     +  ++            P   F+
Sbjct: 7   PCECHQEEDFRVTCKDIQRIPSLPP--STQTLKLIETHLRTI------------PSHAFS 52

Query: 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNN-LTGLIPSTF 557
                       L  +S +Y+S +  +  +      NL+++  + +     LT + P   
Sbjct: 53  N-----------LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101

Query: 558 SNLKHIESLDLSYNKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEI 601
             L  ++ L +    L    P    +       +  +  N     I
Sbjct: 102 KELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 18/162 (11%)

Query: 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIP--SSFGNMKFLQLLDLSN 287
           ++  ++I N     +I  +    LP L    I    L    P  +   +     +L++++
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITD 139

Query: 288 NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPE 347
           N     IP +         F  L N      L L NN  + ++ G+  N T L  + + +
Sbjct: 140 NPYMTSIPVNA--------FQGLCN--ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188

Query: 348 NHLEGPIPVE-FCQLYS-LQILDISDNNISGSLPS-CFHPLS 386
           N     I  + F  +YS   +LD+S  +++ +LPS     L 
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L L           + ++L ++  + ++ +     ++   F +L  +  ++I   +   +
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 62  VVS---------KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK---------IDNLV 103
           +           K L + +TG K   D+ +  S +   +L+++ N             L 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 104 VP-QELRLSDNHFRIPISLEP-LFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161
                L+L +N F    S++   FN ++L   +   N+    I +  +          L 
Sbjct: 156 NETLTLKLYNNGFT---SVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLD 211

Query: 162 LSS 164
           +S 
Sbjct: 212 VSQ 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 52/353 (14%), Positives = 110/353 (31%), Gaps = 86/353 (24%)

Query: 10  NNTI--LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKEL 67
           +  I  +      +     NL   S+    D    + L  ++++    + I         
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-------- 56

Query: 68  YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNH 127
                       ++      N+  L ++ NK+                     ++PL N 
Sbjct: 57  -----------SVQGIQYLPNVTKLFLNGNKL-------------------TDIKPLTNL 86

Query: 128 SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRL 187
             L       N++  +++    L     +L+SLSL  +                     +
Sbjct: 87  KNLGWLFLDENKIK-DLSSLKDLK----KLKSLSLEHN--------------------GI 121

Query: 188 SHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPV 247
           S I          L +  +L +L+L N+ +       +    +L  L + +N I     +
Sbjct: 122 SDING--------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---I 168

Query: 248 EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307
                L  L    +S N +  S   +   +K L +L+L + +   +   H +   V    
Sbjct: 169 VPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSN-LVVPNT 225

Query: 308 LMLSNNSLKEGLYLTN--NSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEF 358
           +  ++ SL     +++  +    N+   L   T  +  I  +    G     F
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 5e-11
 Identities = 55/333 (16%), Positives = 103/333 (30%), Gaps = 55/333 (16%)

Query: 315 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI 374
           + E     +  +   I          I   + +  +   +     +L S+  +  ++++I
Sbjct: 1   MGE-TITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 55

Query: 375 SGSLPSCFHPLSIEQVHLSKNMLHR--------QLKR-DLSYNLLNGSIPDWIGELSQLS 425
             S+    +  ++ ++ L+ N L           L    L  N +   +   + +L +L 
Sbjct: 56  K-SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLK 112

Query: 426 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN----TTLYESYNNSSSL 481
            L L HN +  ++   L  L QL+ L L NN +   I           TL    N  S +
Sbjct: 113 SLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDI 168

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT 541
                                         L+ L  LYLS N  I  +   +  L  +  
Sbjct: 169 VPL-------------------------AGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDV 201

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 601
           L L          +  SNL    ++  +   L    P  + +    E  +V + +L    
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKW-HLPEFT 258

Query: 602 LEWTAQFATFNKSSYEGNTFLCGLPLPICRSPA 634
            E +  F            F   +  P+     
Sbjct: 259 NEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 37/194 (19%)

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIPPC-FDN-- 468
           ++P  +   S  + L L HNNL           L  L  L LS+N L+  I    F    
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 469 --TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 526
               L  S N+  +L             +  F+            L  L  L L  N  I
Sbjct: 89  NLRYLDLSSNHLHTL------------DEFLFSD-----------LQALEVLLLYNNH-I 124

Query: 527 GHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSN---LKHIESLDLSYNKLNGKIPHQLV 582
             +      ++ ++Q L LS N ++        +   L  +  LDLS NKL       L 
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 583 ELKTLEVFSVAYNN 596
           +L       +  +N
Sbjct: 185 KLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 37/177 (20%)

Query: 404 DLSYNLLNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNSLHGS 461
           DLS+N L+    +W    L+ L  L+L HN+L   +  +    +  L+ LDLS+N LH +
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 462 IPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
           +    F +      L    N+   +             +  F             ++ L 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVV------------DRNAFED-----------MAQLQ 139

Query: 517 GLYLSCNKLIGHIPPQI----GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 569
            LYLS N++    P ++      L ++  L+LS N L  L  +    L       L 
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 34/188 (18%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
             LLDLS+N L+    E       NL  L+LS+N L          +S         +  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------FIS---SEAFVPVPN 89

Query: 340 LIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 398
           L ++ +  NHL   +    F  L +L++L + +N+I     + F  ++            
Sbjct: 90  LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------------ 136

Query: 399 RQLKR-DLSYNLLNGSIP----DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL--L 451
            QL++  LS N ++   P        +L +L  L L  N L+      L +L       L
Sbjct: 137 -QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 452 DLSNNSLH 459
            L NN L 
Sbjct: 195 YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 37/162 (22%)

Query: 448 LQLLDLSNNSLHGSIPP--CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501
             LLDLS+N+L   +             +L  S+N+ + +                F   
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFI------------SSEAFVP- 86

Query: 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNL 560
                     +  L  L LS N L   +   +  +L  ++ L L  N++  +  + F ++
Sbjct: 87  ----------VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 561 KHIESLDLSYNKLNGKIPHQ----LVELKTLEVFSVAYNNLS 598
             ++ L LS N+++ + P +      +L  L +  ++ N L 
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 34/176 (19%)

Query: 2   LNLSGNSFNNTILSS---LTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI 58
           L+LS N+   + L +    T L++L SL L+ N L   I  + F  + +L  LD+  N +
Sbjct: 44  LDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

Query: 59  DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRL 110
                             TLD   F     LEVL +  N I        +++   Q+L L
Sbjct: 101 H-----------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 111 SDNHF-RIPI-SLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS 164
           S N   R P+  ++      +L +    +N++  ++  +     P +    L L +
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 516 SGLYLSC-NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST-FSNLKHIESLDLSYNKL 573
           +   LSC  + + ++P  + + T    L+LS+NNL+ L      + L ++ SL LS+N L
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 574 NGKIP----HQLVELKTLEVFSVAYNNLS 598
           N  I       +  L+ L+   ++ N+L 
Sbjct: 77  N-FISSEAFVPVPNLRYLD---LSSNHLH 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 30/129 (23%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           S    L+L+ N+L           L +L  L +  N ++                  +  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----------------FISS 81

Query: 81  REFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEP-LFNH-SRL 130
             F    NL  LD+S N +         +L   + L L +NH      ++   F   ++L
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQL 138

Query: 131 KIFHAKNNQ 139
           +  +   NQ
Sbjct: 139 QKLYLSQNQ 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 31/151 (20%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSL 481
           + L  N ++   P       +L+ +DLSNN +   + P  F       +L    N  + L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQ 540
                       P+  F             L  L  L L+ NK+   +      +L  + 
Sbjct: 96  ------------PKSLFEG-----------LFSLQLLLLNANKI-NCLRVDAFQDLHNLN 131

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
            L+L  N L  +   TFS L+ I+++ L+ N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 15/127 (11%)

Query: 271 PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNI 330
           P +F   K L+ +DLSNNQ++ E+      G  +L  L+L  N +          L  ++
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT--------ELPKSL 99

Query: 331 PGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIE 388
              L +L  L   ++  N +   + V+ F  L++L +L + DN +       F PL +I+
Sbjct: 100 FEGLFSLQLL---LLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 389 QVHLSKN 395
            +HL++N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 36/153 (23%)

Query: 449 QLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503
             + L  N++   IPP  F        +  S N  S L                F     
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL------------APDAFQG--- 78

Query: 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562
                   L  L+ L L  NK+   +P  +   L  +Q L L+ N +  L    F +L +
Sbjct: 79  --------LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 563 IESLDLSYNKLNGKIPH----QLVELKTLEVFS 591
           +  L L  NKL   I       L  ++T+ +  
Sbjct: 130 LNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 26/123 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           + L  N+       + +    LR ++L+ N +   +    F  LR L  L +  NKI   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-- 93

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDN 113
                           L    F+   +L++L ++ NKI         +L     L L DN
Sbjct: 94  ---------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138

Query: 114 HFR 116
             +
Sbjct: 139 KLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query: 319 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGS 377
           + L  N++    PG       L  I +  N +   +  + F  L SL  L +  N I+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 378 LPS-CFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI-GELSQLSHLILGHNNL 434
           LP   F  L S++ + L+ N    ++            +      +L  L+ L L  N L
Sbjct: 95  LPKSLFEGLFSLQLLLLNAN----KIN----------CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 435 EGEVPVQLCELNQLQLLDLSNN 456
           +         L  +Q + L+ N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWI-GE 420
           ++  + +  N I    P  F P               +L+R DLS N ++  +       
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYK-------------KLRRIDLSNNQIS-ELAPDAFQG 78

Query: 421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESY 475
           L  L+ L+L  N +          L  LQLL L+ N ++  +    F +      L    
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 476 NNSSSLDE 483
           N   ++ +
Sbjct: 138 NKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 528 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP----HQLVE 583
            IP  +     I  + L  N +  + P  FS  K +  +DLS N+++ ++       L  
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 584 LKTLEVFSVAYNNLS 598
           L +L    +  N ++
Sbjct: 82  LNSL---VLYGNKIT 93

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 32/294 (10%), Positives = 69/294 (23%), Gaps = 4/294 (1%)

Query: 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSL 364
            ++L+           +  +     +         +   +     +    P+        
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 365 QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQL 424
                S   +     +  +    +             K  +                 QL
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 484
               L        +  +L    +LQ L+  N     +I               +      
Sbjct: 352 FRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410

Query: 485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNL 544
            +    +     D              +       L        +   +  L  +  L+L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDL 470

Query: 545 SYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           S+N L   +P   + L+ +E L  S N L   +   +  L  L+   +  N L 
Sbjct: 471 SHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 24/292 (8%)

Query: 86  FNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145
             +   L + +   D    P  + L D          P      +        +      
Sbjct: 277 MVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKD 336

Query: 146 ESHSLTAPNFQLQSL-SLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENN 204
                   +   + L     S          L    +L+ +   +          ++   
Sbjct: 337 RPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL----LTIILLM 392

Query: 205 TKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMN 264
             L  L    ++L     L      R   LD   +       V   +      + +++  
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL-HLAHK 451

Query: 265 ALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNN 324
            L  ++      +  +  LDLS+N+L   +P  LA     L+ L  S+N+L+        
Sbjct: 452 DL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALE-------- 499

Query: 325 SLSGNIPGWLGNLTWLIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNIS 375
           ++ G     + NL  L  +++  N L+             L +L++  N++ 
Sbjct: 500 NVDG-----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 60/421 (14%), Positives = 119/421 (28%), Gaps = 91/421 (21%)

Query: 158 QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL 217
           QS      Y   +      +      +V      ++  F   L   +     L +V+++ 
Sbjct: 226 QSAWF---YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAP 282

Query: 218 AGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN------ISMNALDGSIP 271
               W       R   + + +                 ++  +      + +        
Sbjct: 283 LSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC 342

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP 331
                 + L   +LS  + T  + +     C  LQ L   N      + L   +L     
Sbjct: 343 RDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALD---- 396

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 391
                L +    +   + L+   P+    L  L+   + +N++            +  +H
Sbjct: 397 ----PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-----KMEYADVRVLH 447

Query: 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLL 451
           L+   L                    + +L  ++HL L HN L   +P  L  L  L++L
Sbjct: 448 LAHKDLTV---------------LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKV 511
             S+N+L                                          +N+  +     
Sbjct: 492 QASDNAL------------------------------------------ENVDGVAN--- 506

Query: 512 LSLLSGLYLSCNKLIGHIP--PQIGNLTRIQTLNLSYNNLT---GLIPSTFSNLKHIESL 566
           L  L  L L  N+ +        + +  R+  LNL  N+L    G+       L  + S+
Sbjct: 507 LPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

Query: 567 D 567
            
Sbjct: 566 L 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 47/338 (13%), Positives = 90/338 (26%), Gaps = 39/338 (11%)

Query: 247 VEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 306
           +   +    L   ++S      S+  S       ++  L        +           +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 307 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQI 366
              +    L                 W G+ +    +++ +         +      L  
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR--DSATDEQLFR 353

Query: 367 LDISDNNIS---GSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQ 423
            ++S    +     L SC     +E  +    +    L R L   L       +   L  
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 424 LSHLILG-----HNNLEGEVPVQLCELNQLQLLDLSNNSLH--GSIPPCFDNTTLYESYN 476
           +  +         +    E  V   E   +++L L++  L     +      T L  S+N
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN 473

Query: 477 NSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNL 536
              +L                              L  L  L  S N  + ++   + NL
Sbjct: 474 RLRALPPALA------------------------ALRCLEVLQASDNA-LENVDG-VANL 507

Query: 537 TRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKL 573
            R+Q L L  N L          +   +  L+L  N L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L+      T+L  L  L  +  L+L+ N L  ++      +LR LE L   +N ++  
Sbjct: 446 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALE-- 499

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELR 109
                            ++    +   L+ L +  N++      Q L 
Sbjct: 500 -----------------NVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI 58
           +L  S N+  N  +  + +L  L+ L L  N L+ S  ++   S   L  L++  N +
Sbjct: 490 VLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 48/342 (14%), Positives = 114/342 (33%), Gaps = 88/342 (25%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           +    ++  +    +   L  + +L+  G  +     ++    L +L  L++ +N+I   
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQIT-- 76

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                            D+    +   +  L++S N + N                   +
Sbjct: 77  -----------------DLAPLKNLTKITELELSGNPLKN-------------------V 100

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
             +     +K     + Q+  ++T    L+     LQ L L  +                
Sbjct: 101 SAIAGLQSIKTLDLTSTQIT-DVTPLAGLS----NLQVLYLDLN---------------- 139

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
               ++++I          L   T L  L + N  ++     P+ +  +L  L   +N I
Sbjct: 140 ----QITNISP--------LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKI 185

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 301
               P+     LP+L   ++  N +  S  S   N   L ++ L+N  +T +   +    
Sbjct: 186 SDISPLA---SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 302 CV-----NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338
            V           ++  ++ +     + +L+ N+  ++ N++
Sbjct: 241 VVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 43/301 (14%), Positives = 92/301 (30%), Gaps = 67/301 (22%)

Query: 276 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335
            +     +    + +T  + +        +  L      +         ++ G     + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT--------TIEG-----VQ 60

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
            L  LI + + +N +    P++   L  +  L++S N +  ++ +     SI+ + L+  
Sbjct: 61  YLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTST 117

Query: 396 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
            +               +    +  LS L  L L  N +    P  L  L  LQ L + N
Sbjct: 118 QI---------------TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 456 NSLHGSIPPCFDNTTLYE---SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
             +   + P  + + L       N  S +                              L
Sbjct: 161 AQVS-DLTPLANLSKLTTLKADDNKISDISPL-------------------------ASL 194

Query: 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
             L  ++L  N+ I  + P + N + +  + L+   +T       +NL     +      
Sbjct: 195 PNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 573 L 573
            
Sbjct: 253 P 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 11/197 (5%)

Query: 402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
           K     + +  ++     +L  ++ L      +       +  LN L  L+L +N +   
Sbjct: 23  KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT-D 77

Query: 462 IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLS 521
           + P  + T + E   + + L     I+        D T+  I  +     LS L  LYL 
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581
            N+ I +I P +  LT +Q L++    ++ L P   +NL  + +L    NK++  I   L
Sbjct: 138 LNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PL 191

Query: 582 VELKTLEVFSVAYNNLS 598
             L  L    +  N +S
Sbjct: 192 ASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 30/254 (11%)

Query: 79  DIREFDSFNNLEVLDMSYNKIDNLVVP------QELRLSDNHFRIPISLEPLFNHSRLKI 132
            I    +  N   +    + + + V          L           ++E +   + L  
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 133 FHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKM 192
              K+NQ+  ++    +LT    ++  L LS   G+ +     +     ++ + L+  ++
Sbjct: 68  LELKDNQIT-DLAPLKNLT----KITELELS---GNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 193 NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV 252
               P   L   + L  L+L  + +      P+     L  L I N  +    P+     
Sbjct: 120 TDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLA---N 171

Query: 253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312
           L  L       N +  S  S   ++  L  + L NNQ++   P        NL  + L+N
Sbjct: 172 LSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

Query: 313 NSLKEGLYLTNNSL 326
            ++       NN+L
Sbjct: 227 QTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI-- 58
           +L L  N   N  +S L  L++L+ L++    +    D+    +L  L  L   +NKI  
Sbjct: 133 VLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKISD 187

Query: 59  ----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 102
                      E++L +       D+    + +NL ++ ++   I N 
Sbjct: 188 ISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQ 232

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 442 LCELNQLQLLDLSNNSLHGSIPPC-FDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499
              L     +    +++  ++     D  TTL       ++++    + +       +  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELK 71

Query: 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
              I  +   K L+ ++ L LS N  + ++   I  L  I+TL+L+   +T + P   + 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNP-LKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           L +++ L L  N++    P  L  L  L+  S+    +S
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQ-IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
              L+ LY+   + + H+  + +  L  ++ L +  + L  + P  F     +  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 571 NKLNGKIPHQLVELKTLEVFSVAYNNL 597
           N L   +  + V+  +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 37/131 (28%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328
                    + L  L + N Q    +      G   L+ L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF----------- 70

Query: 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPLSI 387
                                    +  + F     L  L++S N +          LS+
Sbjct: 71  -------------------------VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL 105

Query: 388 EQVHLSKNMLH 398
           +++ LS N LH
Sbjct: 106 QELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 520 LSC-NKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           L C           +     +  L +     L  L       L  + +L +  + L    
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 578 PHQLVELKTLEVFSVAYNNLS 598
           P        L   ++++N L 
Sbjct: 73  PDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
           + L  L I N     H+ +     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSL 315
            L   +      G ++LQ L+LS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 24/112 (21%)

Query: 12  TILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDD 71
             L  L    +L  L +        +++++   L +L  L I ++ +             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------ 69

Query: 72  TGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFR 116
                 +    F     L  L++S+N +++L          QEL LS N   
Sbjct: 70  -----FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 1/130 (0%)

Query: 404 DLSYNLLNGSIPDW-IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSI 462
            +        +    +  L +L +L +  + L    P       +L  L+LS N+L    
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

Query: 463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522
                  +L E   + + L     + +     +          +       L      SC
Sbjct: 97  WKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASC 156

Query: 523 NKLIGHIPPQ 532
                 +   
Sbjct: 157 GVPTLKVQVP 166

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
            N   ++  +  L+ +   ++L+ L+L+ N +    D+     L  LEEL +  N++   
Sbjct: 46  FNGDNSNIQS--LAGMQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNL 100

Query: 62  VVS-----KELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRL 110
                     L+LD+   +   D        NLE+L +  NK+        L   + L L
Sbjct: 101 NGIPSACLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDL 157

Query: 111 SDNHFRIPISLEPLFNHSRLKIFHAKNNQ-MNAEITESHSLTAPN 154
             N      +   L    ++        + +N  +     L   N
Sbjct: 158 HGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 44/286 (15%), Positives = 87/286 (30%), Gaps = 64/286 (22%)

Query: 10  NNTI--LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKEL 67
              I  +     L++    NL   S+    D+     L  ++  +   + I         
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-------- 54

Query: 68  YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNH 127
                       +     F NL+ L +S+N+I +                   L PL + 
Sbjct: 55  -----------SLAGMQFFTNLKELHLSHNQISD-------------------LSPLKDL 84

Query: 128 SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRL 187
           ++L+      N+    +   + + +    L  L L     + +     L H  +LE + +
Sbjct: 85  TKLEELSVNRNR----LKNLNGIPSAC--LSRLFLD---NNELRDTDSLIHLKNLEILSI 135

Query: 188 SHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPV 247
            + K+        L   +KL  L L  + +       +   K++  +D++          
Sbjct: 136 RNNKLK-SIVM--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVN---- 186

Query: 248 EIGDVLPSLYVFNISMNALDGSI--PSSFGNMKFLQLLDLSNNQLT 291
           E     P LY+ N   +  DG    P    N        +      
Sbjct: 187 EPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 58/268 (21%)

Query: 79  DIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKI 132
            +       N    ++    +        L   Q     +++ +   SL  +   + LK 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKE 67

Query: 133 FHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKM 192
            H  +NQ++ +++    LT    +L+ LS++ +                    RL ++  
Sbjct: 68  LHLSHNQIS-DLSPLKDLT----KLEELSVNRN--------------------RLKNLNG 102

Query: 193 NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV 252
                      +  L+ LFL N+ L       +   K L IL I NN ++    + +   
Sbjct: 103 ---------IPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS---IVMLGF 148

Query: 253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312
           L  L V ++  N +  +       +K +  +DL+  +   E  +           L ++N
Sbjct: 149 LSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVK-------YQPELYITN 199

Query: 313 N-SLKEGLYLTNNSLSGNIPGWLGNLTW 339
                +G +++   +S       G + W
Sbjct: 200 TVKDPDGRWISPYYISNGGSYVDGCVLW 227

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 38/244 (15%), Positives = 75/244 (30%), Gaps = 54/244 (22%)

Query: 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 393
              L   +   + +  +   +  +  +L  +Q  +  ++NI  SL       +++++HLS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 453
            N +      DLS           + +L++L  L +  N L+    +       L  L L
Sbjct: 72  HNQI-----SDLSP----------LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFL 113

Query: 454 SNNSLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQG 509
            NN L         +      L    N                          +  I   
Sbjct: 114 DNNELR-DTDS-LIHLKNLEILSIRNNK-------------------------LKSIVML 146

Query: 510 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 569
             LS L  L L  N+ I +    +  L ++  ++L+              L    ++   
Sbjct: 147 GFLSKLEVLDLHGNE-ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 570 YNKL 573
             + 
Sbjct: 205 DGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 54/181 (29%)

Query: 418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNN 477
              L+      LG  ++   V     EL+ +Q  +  N+++  S+      T L E    
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKE---- 67

Query: 478 SSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 537
                                                   L+LS N+ I  + P + +LT
Sbjct: 68  ----------------------------------------LHLSHNQ-ISDLSP-LKDLT 85

Query: 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597
           +++ L+++ N L  L     + L     L L  N+L       L+ LK LE+ S+  N L
Sbjct: 86  KLEELSVNRNRLKNLNGIPSACLSR---LFLDNNELR-DTDS-LIHLKNLEILSIRNNKL 140

Query: 598 S 598
            
Sbjct: 141 K 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 24/186 (12%)

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
           ++  T L  L L ++ ++     P+    +L  L ++ N ++    +        L    
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK---- 316
           +  N L      S  ++K L++L + NN+L   I   L      L+ L L  N +     
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLG-FLSKLEVLDLHGNEITNTGG 167

Query: 317 -------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 369
                    + LT          +   L     +  P+     P  +      S     +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCV 225

Query: 370 SDNNIS 375
                 
Sbjct: 226 LWELPV 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 48/326 (14%), Positives = 103/326 (31%), Gaps = 87/326 (26%)

Query: 14  LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTG 73
           + S    +     NL   S+    D    + L  ++++    + I               
Sbjct: 17  IFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-------------- 59

Query: 74  FKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIF 133
                 ++      N+  L ++ NK+                     ++PL N   L   
Sbjct: 60  -----SVQGIQYLPNVTKLFLNGNKL-------------------TDIKPLANLKNLGWL 95

Query: 134 HAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 193
               N++  +++    L     +L+SLSL  +                     +S I   
Sbjct: 96  FLDENKVK-DLSSLKDLK----KLKSLSLEHN--------------------GISDING- 129

Query: 194 GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253
                  L +  +L +L+L N+ +       +    +L  L + +N I     +     L
Sbjct: 130 -------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---IVPLAGL 177

Query: 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313
             L    +S N +  S   +   +K L +L+L + +   +   H +        ++ +  
Sbjct: 178 TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSN------LVVPNTV 229

Query: 314 SLKEGLYLTNNSLSGNIPGWLGNLTW 339
              +G  +T   +S +      N+ W
Sbjct: 230 KNTDGSLVTPEIISDDGDYEKPNVKW 255

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 52/304 (17%), Positives = 97/304 (31%), Gaps = 67/304 (22%)

Query: 276 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335
                   +L    +T  + ++      ++  ++ +N+ +K        S+ G     + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--------SVQG-----IQ 65

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
            L  +  + +  N L    P     L +L  L + +N +   L S      ++ + L  N
Sbjct: 66  YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHN 122

Query: 396 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
            +      D++           +  L QL  L LG+N +       L  L +L  L L +
Sbjct: 123 GI-----SDING----------LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED 165

Query: 456 NSLHGSIPPCFDNTTLYE---SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVL 512
           N +   I P    T L     S N+ S L         + G                  L
Sbjct: 166 NQIS-DIVPLAGLTKLQNLYLSKNHISDLRA-------LAG------------------L 199

Query: 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
             L  L L   + +        NL    T+  +  +L    P   S+    E  ++ ++ 
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

Query: 573 LNGK 576
               
Sbjct: 258 PEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 442 LCELNQLQLLDLSNNSLHGSIP-PCFDN-TTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499
                +    +L   S+  ++     ++   +  + ++  S+     I +     +    
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLN 76

Query: 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
              +  I     L  L  L+L  NK +  +   + +L ++++L+L +N ++ +      +
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGISDING--LVH 132

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           L  +ESL L  NK+       L  L  L+  S+  N +S
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 29/231 (12%)

Query: 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVND 215
            +  +  ++S    +   + + +  ++  + L+  K+    P   L N   L  LFL  +
Sbjct: 47  SIDQIIANNS---DIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDEN 100

Query: 216 SLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 275
            +       +   K+L  L + +N I     +     LP L    +  N +  +  +   
Sbjct: 101 KVKD--LSSLKDLKKLKSLSLEHNGISDINGLV---HLPQLESLYLGNNKI--TDITVLS 153

Query: 276 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-----------EGLYLTNN 324
            +  L  L L +NQ++ +I      G   LQ L LS N +            + L L + 
Sbjct: 154 RLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210

Query: 325 SLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
                      NL     +   +  L  P  +        +  ++  +   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 34/166 (20%)

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHGSIPP-CFDN-- 468
            IP+ I      + L L +N            +L QL+ ++ SNN +   I    F+   
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 469 --TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 526
               +  + N   ++                F             L  L  L L  N++ 
Sbjct: 82  GVNEILLTSNRLENV------------QHKMFKG-----------LESLKTLMLRSNRI- 117

Query: 527 GHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
             +       L+ ++ L+L  N +T + P  F  L  + +L+L  N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 37/154 (24%)

Query: 449 QLLDLSNNSLHGSIPP--CFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502
             L L+NN     +     F        +  S N  + +             +G F    
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDI------------EEGAFEG-- 79

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLK 561
                     S ++ + L+ N+L   +  ++   L  ++TL L  N +T +   +F  L 
Sbjct: 80  ---------ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 562 HIESLDLSYNKLNGKIPH----QLVELKTLEVFS 591
            +  L L  N++   +       L  L TL + +
Sbjct: 130 SVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           L ++NN         I   LP L   N S N +      +F     +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 294 IPEHLAVGCVNLQFLMLSNNSLK-------------EGLYLTNNSLSGNIPGWLGNLTWL 340
           +   +  G  +L+ LML +N +                L L +N ++   PG    L  L
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 341 IHIIMPEN 348
             + +  N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 27/124 (21%)

Query: 2   LNLSGNSFNN-TILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           L L+ N F           L  LR +N + N +   I+   F+    + E+ +  N+++ 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE- 94

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSD 112
                            +  + F    +L+ L +  N+I          L   + L L D
Sbjct: 95  ----------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 113 NHFR 116
           N   
Sbjct: 139 NQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 15/126 (11%)

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP 331
             F  +  L+ ++ SNN++T +I E    G   +  ++L++N L+    + +    G   
Sbjct: 51  GIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN---VQHKMFKG--- 103

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 389
             L +L  L+   +  N +   +  + F  L S+++L + DN I+   P  F  L S+  
Sbjct: 104 --LESLKTLM---LRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157

Query: 390 VHLSKN 395
           ++L  N
Sbjct: 158 LNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 518 LYLSCNKLIGHIPPQIG--NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
           L L+ N+    +        L +++ +N S N +T +    F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 576 KIP----HQLVELKTLEVFSVAYNNLS 598
            +       L  LKTL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 26/122 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           +N S N   +    +    S +  + L  N LE ++  K F  L  L+ L +  N+I   
Sbjct: 62  INFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI--- 117

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDN 113
                           +    F   +++ +L +  N+I        D L     L L  N
Sbjct: 118 --------------TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

Query: 114 HF 115
            F
Sbjct: 164 PF 165

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 76/340 (22%)

Query: 280 LQLLDLSNNQLTGEIPEHLA---VGCVNLQFLMLSNNS------------LKEGLYLTNN 324
           ++   L  + +T E  + +    +   +++ ++LS N+            +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 325 SLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-- 382
             S    G + +       ++ +            +   L  + +SDN    +       
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQ---------ALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 383 ---HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 439
                  +E ++L  N L  Q    ++  L   ++         L  +I G N LE    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 440 VQLCEL----NQLQLLDLSNNS---------LHGSIPPCFDNTTLYESYNNSSSLDEKFE 486
            +  +       L  + +  N          L   +  C +   L    N          
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--------- 227

Query: 487 ISFFIEGPQGDFTTKNIAYIYQG-KVLSLLSGLYLSCNKL-------IGHIPPQIGNLTR 538
                      FT    + +    K    L  L L+   L       +     ++ N+  
Sbjct: 228 -----------FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG- 275

Query: 539 IQTLNLSYNNLT-----GLIPSTFSNLKHIESLDLSYNKL 573
           +QTL L YN +       L       +  +  L+L+ N+ 
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 53/349 (15%), Positives = 110/349 (31%), Gaps = 73/349 (20%)

Query: 2   LNLSGNSFNN----TILSSLTHLSSLRSLNLNGNSL--EGSIDVKEF-DSLRDLEELDIG 54
            +L  ++       ++ + L    S++ + L+GN++  E +  + E   S +DLE  +  
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 55  ENKIDKFVVSKELYLDDTGFKGTLDIREFDSFN-NLEVLDMSYNKIDNLVVPQELRLSDN 113
           +    +        + D   +    + +       L  + +S N                
Sbjct: 69  DIFTGR--------VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ--------- 111

Query: 114 HFRIPISLEPLFNHSRLKIFHAKNNQMNAE----------ITESHSLTAPNFQLQSLSLS 163
               P+  + L  H+ L+  +  NN +  +              +        L+S+   
Sbjct: 112 ---EPLI-DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 164 S-SYGDG--VTFPKFLYHQHDLEYVRLS--HIKMNG--EFPNWLLENNTKLATLFLVNDS 216
                +G    + K       L  V++    I+  G        L    +L  L L +++
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 217 L--AGPFWLP--IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPS 272
               G   L   + S   L  L +++  +       + D                    S
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF------------------S 269

Query: 273 SFGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKE 317
              N+  LQ L L  N++  +    +   +     +L FL L+ N   E
Sbjct: 270 KLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 51/252 (20%), Positives = 75/252 (29%), Gaps = 43/252 (17%)

Query: 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLS 286
           S K L I + S+    G +  EI + L  L                +      L  + LS
Sbjct: 58  SKKDLEIAEFSDIFT-GRVKDEIPEALRLLL--------------QALLKCPKLHTVRLS 102

Query: 287 NNQLTGEIPEHLAVG---CVNLQFLMLSNNSLKE--GLYLTNNSLSGNIPGWLGNLTWLI 341
           +N       E L         L+ L L NN L    G  +        +     N   L 
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 342 HIIMPENHLEGPIPVEFCQLY----SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 397
            II   N LE     E+ + +     L  + +  N I        H L      L+    
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP--EGIEHLLL---EGLAYC-- 215

Query: 398 HRQLKR-DLSYNLLNG----SIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL------N 446
            ++LK  DL  N        ++   +     L  L L    L       + +        
Sbjct: 216 -QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 447 QLQLLDLSNNSL 458
            LQ L L  N +
Sbjct: 275 GLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 36/293 (12%), Positives = 73/293 (24%), Gaps = 91/293 (31%)

Query: 362 YSLQILDISDNNISGS-----LPSCFHPLSIEQVHLSKNML--------------HRQLK 402
           +S++   +  + I+               S++++ LS N +               + L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 403 R-DLSYNLLN----------GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL----NQ 447
             + S                 +   + +  +L  + L  N         L +       
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 448 LQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA--- 504
           L+ L L NN L                                     G      IA   
Sbjct: 124 LEHLYLHNNGL-------------------------------------GPQAGAKIARAL 146

Query: 505 ----YIYQGKVLSLLSGLYLSCNKL----IGHIPPQIGNLTRIQTLNLSYNNLT-----G 551
                  + K    L  +    N+L    +        +   + T+ +  N +       
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 552 LIPSTFSNLKHIESLDLSYNKLNGK----IPHQLVELKTLEVFSVAYNNLSGE 600
           L+    +  + ++ LDL  N         +   L     L    +    LS  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 32/181 (17%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
            NL   S   T   +   L+S+  +  N + ++    V+    L ++  L +G NK+   
Sbjct: 24  ANLKKKSV--TDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDI 78

Query: 59  ---DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQE 107
               +      L L     + +L    FD   NL+ L +  N++        D L     
Sbjct: 79  SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 108 LRLSDNHFRIPISLEP-LFNH-SRLKIFHAKNNQMNA-------EITESHSLTAPNFQLQ 158
           L L+ N  +   SL   +F+  + L       NQ+ +       ++T+   L     QL+
Sbjct: 138 LNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 159 S 159
           S
Sbjct: 195 S 195

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 40/194 (20%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           +L    +          L+ +  +I  +++++    +Q   L  ++ L L  N LH  I 
Sbjct: 25  NLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLH-DIS 79

Query: 464 PCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519
                    T L  + N   SL            P G F             L+ L  L 
Sbjct: 80  A-LKELTNLTYLILTGNQLQSL------------PNGVF-----------DKLTNLKELV 115

Query: 520 LSCNKLIGHIPPQIGN-LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
           L  N+L   +P  + + LT +  LNL++N L  L    F  L ++  LDLSYN+L   +P
Sbjct: 116 LVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP 173

Query: 579 H----QLVELKTLE 588
                +L +LK L 
Sbjct: 174 EGVFDKLTQLKDLR 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 37/203 (18%)

Query: 247 VEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV--GCVN 304
               + L S+     + + +  S+      +  ++ L L  N+L       ++      N
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLHD-----ISALKELTN 86

Query: 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSL 364
           L +L+L+ N L+        SL   +   L NL  L   ++ EN L+      F +L +L
Sbjct: 87  LTYLILTGNQLQ--------SLPNGVFDKLTNLKEL---VLVENQLQSLPDGVFDKLTNL 135

Query: 365 QILDISDNNISGSLPS-CFHPLS-IEQVHLSKNMLHR----------QLKR-DLSYNLLN 411
             L+++ N +  SLP   F  L+ + ++ LS N L            QLK   L  N L 
Sbjct: 136 TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 412 GSIPDWI-GELSQLSHLILGHNN 433
            S+PD +   L+ L ++ L H+N
Sbjct: 195 -SVPDGVFDRLTSLQYIWL-HDN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 32/159 (20%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSL 481
           L L    L          L +L  L+L  N L  ++    FD+     TL  + N  +SL
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQ 540
                       P G F             L+ L  LYL  N+L   +P  +   LT+++
Sbjct: 99  ------------PLGVFDH-----------LTQLDKLYLGGNQLKS-LPSGVFDRLTKLK 134

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
            L L+ N L  +    F  L ++++L LS N+L   +PH
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--- 58
           L+L          ++   L+ L  LNL+ N L+ ++    FD L +L  L +  N++   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 59  -----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVP 105
                D      +LYL     K +L    FD    L+ L ++ N++        D L   
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 106 QELRLSDN 113
           Q L LS N
Sbjct: 158 QTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 31/174 (17%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           DL    L          L++L+ L L +N L+        +L +L  L L+NN L  S+P
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLP 99

Query: 464 P-CFDNTT----LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
              FD+ T    LY   N   SL            P G F             L+ L  L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDR-----------LTKLKEL 136

Query: 519 YLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
            L+ N+L   IP      LT +QTL+LS N L  +    F  L  ++++ L  N
Sbjct: 137 RLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 34/149 (22%)

Query: 449 QLLDLSNNSLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504
           + LDL +  L       F      T L   YN   +L              G F      
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------------SAGVFDD---- 81

Query: 505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHI 563
                  L+ L  L L+ N+L   +P  +  +LT++  L L  N L  L    F  L  +
Sbjct: 82  -------LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133

Query: 564 ESLDLSYNKLNGKIPH----QLVELKTLE 588
           + L L+ N+L   IP     +L  L+TL 
Sbjct: 134 KELRLNTNQLQ-SIPAGAFDKLTNLQTLS 161

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 31/173 (17%)

Query: 264 NALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTN 323
             L     ++F  +  L  L+L  NQL   +   +      L  L L+NN L        
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA------- 96

Query: 324 NSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CF 382
            SL   +   L  L  L    +  N L+      F +L  L+ L ++ N +  S+P+  F
Sbjct: 97  -SLPLGVFDHLTQLDKL---YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 383 HPLS-IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI-GELSQLSHLILGHNN 433
             L+ ++ + LS N    QL+          S+P      L +L  + L   N
Sbjct: 152 DKLTNLQTLSLSTN----QLQ----------SVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 27/170 (15%)

Query: 317 EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376
           E L L +  L+         LT L  + +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 377 SLPS-CFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWI-GELSQLSHLILGHNN 433
           SLP   F  L+             QL +  L  N L  S+P  +   L++L  L L  N 
Sbjct: 97  SLPLGVFDHLT-------------QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ 142

Query: 434 LEGEVPVQLCE-LNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNN 477
           L+  +P    + L  LQ L LS N L  S+P   FD      T+   + N
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT-LFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           LYL  N+    +P ++ N   +  ++LS N ++ L   +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 578 PH----QLVELKTLE 588
           P      L  L+ L 
Sbjct: 94  PPRTFDGLKSLRLLS 108

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 16/89 (17%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 316
            +P    N K L L+DLSNN+++  +          L  L+LS N L+            
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103

Query: 317 -EGLYLTNNSLSGNIP-GWLGNLTWLIHI 343
              L L  N +S  +P G   +L+ L H+
Sbjct: 104 LRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
              L+ + LS N+ I  +  Q   N+T++ TL LSYN L  + P TF  LK +  L L  
Sbjct: 53  YKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111

Query: 571 NKLNGKIPH 579
           N ++  +P 
Sbjct: 112 NDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 30/128 (23%)

Query: 449 QLLDLSNNSLHGSIPPCFDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504
             L L  N     +P    N    T +  S N  S+L                F+     
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL------------SNQSFSN---- 76

Query: 505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHI 563
                  ++ L  L LS N+L   IPP+    L  ++ L+L  N+++ +    F++L  +
Sbjct: 77  -------MTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 564 ESLDLSYN 571
             L +  N
Sbjct: 129 SHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 13/176 (7%)

Query: 417 WIGELSQLSHLILGHNNLEGE--VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYES 474
           WI E   LS ++     L            + +    +L +  +     P      +  S
Sbjct: 158 WI-EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 475 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIG 534
             +  +L EK  +   +E    D        ++       L  L +   +    +     
Sbjct: 217 --DLPNL-EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 535 N---LTRIQTLNLSYNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583
               L +++T+++S   LT     L+      +KH++ +++ YN L+ ++  +L +
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 235 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKF---LQLLDLSNNQLT 291
              + ++    P+   D  P+L    I        +   F        L+ +D+S   LT
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

Query: 292 GEIPEHLAVGC---VNLQFLMLSNNSL 315
            E    L        +L+F+ +  N L
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIG--DVLPSLYVFNISMNALDGS----IPSSFGN 276
                   L  L I +   +  +       D+LP L   +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 277 MKFLQLLDLSNNQLTGEIPEHLA 299
           +K L+ +++  N L+ E+ + L 
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQ 328

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 47/347 (13%), Positives = 95/347 (27%), Gaps = 90/347 (25%)

Query: 276 NMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLK--------EGLYLTN 323
               +  L+LS N L  +    + + LA    N+  L LS N L         + L    
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 324 NS-----LSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI---- 374
            +     L  N        +                        S+  L++  N++    
Sbjct: 109 FTITVLDLGWNDFSSKS-SSEFKQAFSNLPA-------------SITSLNLRGNDLGIKS 154

Query: 375 ----SGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430
                  L +   P ++  ++L  N L  +   +L+  L +          + ++ L L 
Sbjct: 155 SDELIQILAAI--PANVNSLNLRGNNLASKNCAELAKFLASIP--------ASVTSLDLS 204

Query: 431 HNNLEGEVPVQLCEL-----NQLQLLDLSNNSLHGS--------IPPCFDNTTLYESYNN 477
            N L  +   +L  +     N +  L+L  N LHG                 T+Y  Y+ 
Sbjct: 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264

Query: 478 SSSLDEKFEISFFIEGPQGDFTTKNIAYIYQG-KVLSLLSGLYLSCNKLIGHIPPQIGNL 536
                              + + +    +      +  +  +  +  ++       I NL
Sbjct: 265 V-----------------KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307

Query: 537 -----TRIQTLNLSYNNLT-----GLIPSTFSNLKHIESLDLSYNKL 573
                 +    +L    L             +    +     +   L
Sbjct: 308 IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 48/365 (13%), Positives = 106/365 (29%), Gaps = 85/365 (23%)

Query: 17  LTHLSSLRSLNLNGNSLEGSIDVKEF-DSLRD----LEELDIGENKIDKFVVSKELYLDD 71
            +    + SL+L+ N+L  SI   E   +  +    +  L++  N +             
Sbjct: 18  TSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSL------------- 63

Query: 72  TGFKGTLDIREFDSFNN--LEVLDMSYNKIDN---------LVVP----QELRLSDNHFR 116
            GFK + ++ +  +     +  L++S N +           L         L L  N F 
Sbjct: 64  -GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 117 ----IPISLEPLFNHSRLKIFHAKNNQMNAEITE--SHSLTAPNFQLQSLSLSS-SYGD- 168
                          + +   + + N +  + ++     L A    + SL+L   +    
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 169 GVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFL----VNDSLAGPF-WL 223
                             L+           L      + +L L    +         ++
Sbjct: 183 NCAE--------------LAKF---------LASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVL---PSLYVFNISMNALDG-------SIPSS 273
                  +  L++  N + G     +  +      L    +  + +         ++ ++
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 274 FGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN 329
           F N++ + L+D +  ++       I   +           L N  L        N    N
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339

Query: 330 IPGWL 334
           IP  L
Sbjct: 340 IPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 55/351 (15%), Positives = 100/351 (28%), Gaps = 105/351 (29%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
           +  LDLS N L            V L     +  +    L L+ NSL         N   
Sbjct: 24  VTSLDLSLNNLYSI-------STVELIQAFANTPASVTSLNLSGNSLGFK------NSDE 70

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI--------SGSLPSCFHPLSIEQVH 391
           L+ I+                  ++  L++S N +          +L +   P +I  + 
Sbjct: 71  LVQILAAIPA-------------NVTSLNLSGNFLSYKSSDELVKTLAAI--PFTITVLD 115

Query: 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL-----N 446
           L  N    +   +      N          + ++ L L  N+L  +   +L ++      
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLP--------ASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 447 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI 506
            +  L+L  N+L                                            +A  
Sbjct: 168 NVNSLNLRGNNL-------------------------------------ASKNCAELAKF 190

Query: 507 YQGKVLSLLSGLYLSCNKLIGHIPPQI------GNLTRIQTLNLSYNNLTG----LIPST 556
                 S+ S L LS N  +G                 + +LNL  N L G     +   
Sbjct: 191 LASIPASVTS-LDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVEL-------KTLEVFSVAYNNLSGE 600
             +LKH++++ L Y+ +      Q   L       + + +       +   
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 556
             T + I    Q         L L   K I  I      L +   ++ S N +  L    
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DG 59

Query: 557 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           F  L+ +++L ++ N++          L  L    +  N+L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP 331
           + + N    + LDL   ++   I E+L         +  S+N ++         L G   
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--------KLDG--- 59

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
                L  L  +++  N +          L  L  L +++N++ 
Sbjct: 60  --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI-- 58
           M+ L+         +  T+    R L+L G  +    ++    +L   + +D  +N+I  
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEIRK 56

Query: 59  ----DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 102
                     K L +++      +      +  +L  L ++ N +  L
Sbjct: 57  LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 509 GKVLSLLSGLYLSCNKL--IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 566
           G  L     +  S N++  +   P     L R++TL ++ N +  +       L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 567 DLSYNKLNG-KIPHQLVELKTLEVFSVAYN 595
            L+ N L        L  LK+L    +  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
             N  +   L L    +     L   +  +   +D S+N IR    ++   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLT--GEIPEHLAVGCVNLQFLMLSNN 313
           ++ N +          +  L  L L+NN L   G++ + LA    +L +L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288
            R   LD+    I   +   +G  L      + S N +   +   F  ++ L+ L ++NN
Sbjct: 19  VRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 289 QLTGEIPEHLAVGCVNLQFLMLSNNSLKE 317
           ++   I E L     +L  L+L+NNSL E
Sbjct: 75  RIC-RIGEGLDQALPDLTELILTNNSLVE 102

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 38/150 (25%), Positives = 51/150 (34%), Gaps = 30/150 (20%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSL 481
           L L  N +    P     L  L+ L L +N L  ++P   FD+    T L    N  + L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQT 541
                       P   F             L  L  L++ CNKL   +P  I  LT +  
Sbjct: 104 ------------PSAVFDR-----------LVHLKELFMCCNKL-TELPRGIERLTHLTH 139

Query: 542 LNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
           L L  N L  +    F  L  +    L  N
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 25/122 (20%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L L  N            L +L+ L L  N L  ++ V  FDSL  L  LD+G N++   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK-------IDNLVVPQELRLSDNH 114
                           L    FD   +L+ L M  NK       I+ L     L L  N 
Sbjct: 103 ----------------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

Query: 115 FR 116
            +
Sbjct: 147 LK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 264 NALDGSIPSSFGNMKFLQLLDLSNNQLT---GEIPEHLAVGCVNLQFLMLSNN---SLKE 317
           N +    P  F ++  L+ L L +NQL      + + L      L  L L  N    L  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 318 G----------LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL 367
                      L++  N L+  +P  +  LT L H+ + +N L+      F +L SL   
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

Query: 368 DISDN 372
            +  N
Sbjct: 165 YLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
           L  L  LYL  N+L G +P  +  +LT++  L+L  N LT L  + F  L H++ L +  
Sbjct: 63  LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

Query: 571 NKLNGKIPHQLVELKTLEVFSVAYNNL 597
           NKL  ++P  +  L  L   ++  N L
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 317 EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376
           + LYL +N ++   PG   +L  L  + +  N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 377 SLPS-CFHPLS-IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL 434
            LPS  F  L  ++++ +  N    +L            +P  I  L+ L+HL L  N L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCN----KLT----------ELPRGIERLTHLTHLALDQNQL 147

Query: 435 EGEVPVQLCELNQLQLLDLSNN 456
           +         L+ L    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 521 SCN--------KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
           SC+        K    +P  I      Q L L  N +T L P  F +L +++ L L  N+
Sbjct: 18  SCSGTTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75

Query: 573 L----NGKIPHQLVELKTL 587
           L     G +   L +L  L
Sbjct: 76  LGALPVG-VFDSLTQLTVL 93

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 501 KNIAYIYQGKVLSLLSGLYLSCNKL--IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFS 558
                         L  L      L  I ++P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 559 NLKHIESLDLSYNKLNG-KIPHQLVELKTLEVFSVAYN 595
              ++  L+LS NK+        L +L+ L+   +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 501 KNIAYIYQGKVLSLLSGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
           + I    + +  S +  L L  ++   G +         ++ L+     LT +  +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK 62

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           L  ++ L+LS N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 21/109 (19%)

Query: 2   LNLSGNSFNN-TILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           L L  +  N   +         L  L+     L     +     L  L++L++ +N++  
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNRVSG 78

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELR 109
                                  +   NL  L++S NKI +L   + L+
Sbjct: 79  -----------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
           ++ L L N++      E L      L+FL   N  L         S++      L  L  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIAN-----LPKLNK 65

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
           L  + + +N + G + V   +  +L  L++S N I 
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           L + N+         + D    L   +     L  SI ++   +  L+ L+LS+N+++G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG- 78

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKE 317
             E LA  C NL  L LS N +K+
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKD 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLS 286
             + L  L   N  +     +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 287 NNQLTG-EIPEHLAVGCVNLQFLMLSNN 313
            N++      E L     NL+ L L N 
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 27/128 (21%)

Query: 19  HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTL 78
             S ++ L L+ +           D   +LE L      +                    
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------------------ 56

Query: 79  DIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRL 130
            I      N L+ L++S N++        +       L LS N  +   ++EPL     L
Sbjct: 57  -IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

Query: 131 KIFHAKNN 138
           K     N 
Sbjct: 116 KSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339
           ++ L L N +      E L    VNL+FL L N  L         S+S      L  L  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--------SVSN-----LPKLPK 72

Query: 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
           L  + + EN + G + +   +L +L  L++S N + 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293
           L + N          +     +L   ++    L  S+ S+   +  L+ L+LS N++ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG- 85

Query: 294 IPEHLAVGCVNLQFLMLSNNSLKE 317
             + LA    NL  L LS N LK+
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKD 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 515 LSGLYLSCNKL--IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
           L  L L    L  + ++P     L +++ L LS N + G +      L ++  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 573 LNG-KIPHQLVELKTLEVFSVAYN 595
           L        L +L+ L+   +   
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 501 KNIAYIYQGKVLSLLSGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 559
           + I    + +  + +  L L   K   G I         ++ L+L    L  +  S    
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK 69

Query: 560 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598
           L  ++ L+LS N++ G +     +L  L   +++ N L 
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 1   MLNLSGNSFNNT-ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID 59
            L L     N+  I        +L  L+L    L     V     L  L++L++ EN+I 
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIF 84

Query: 60  KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 102
                                   +   NL  L++S NK+ ++
Sbjct: 85  G-----------------GLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 290
           L  L + N  +     V     LP L    +S N + G +      +  L  L+LS N+L
Sbjct: 51  LEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 291 T--GEIPEHLAVGCVNLQFLMLSNN 313
                + E L      L+ L L N 
Sbjct: 108 KDISTL-EPLK-KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 19/101 (18%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L         +S+L  L  L+ L L+ N +         + L +L  L++  NK+   
Sbjct: 54  LSLINVGL--ISVSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 102
                             +        L+ LD+   ++ NL
Sbjct: 111 ----------------STLEPLKKLECLKSLDLFNCEVTNL 135

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 28/156 (17%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+         + ++L+ L + + L L+ N++E    +     + +L  L +G N I K 
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKKI 85

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNHF 115
                +                   + LE L +SYN+I      + LV  + L +S+N  
Sbjct: 86  ENLDAV------------------ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 116 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLT 151
                ++ L    +L+      N +  +  E+++ +
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
           L     L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYN 103

Query: 572 KLNGKIPHQLVELKTLEVFSVAYNNLS 598
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 17/106 (16%)

Query: 270 IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN 329
           + ++   +K  + L LS N +  +I   L+ G  NL+ L L  N +K+            
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIKK------------ 84

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
           I         L  + +  N +     +E  +L +L++L +S+N I+
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 518 LYLSCNKLIGHIPPQ--IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
           L L+ N+ +G I      G L  +  L L  N LTG+ P+ F    HI+ L L  NK+  
Sbjct: 34  LLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 576 KIPH----QLVELKTLEVFSVAYNN 596
           +I +     L +LKTL +    Y+N
Sbjct: 92  EISNKMFLGLHQLKTLNL----YDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLT 291
            L +++N +       +   LP L    +  N L   I  + F     +Q L L  N++ 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 292 GEIPEHLAVGCVNLQFLMLSNNSLK 316
            EI   + +G   L+ L L +N + 
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
           L  L  L L  N+L G I P      + IQ L L  N +  +    F  L  +++L+L  
Sbjct: 53  LPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111

Query: 571 NKLNGKIPH----QLVELKTLEVFS 591
           N+++  +       L  L +L + S
Sbjct: 112 NQISC-VMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 32/130 (24%)

Query: 449 QLLDLSNNSLHGSIPPC--FDN----TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502
             L L++N L G I     F        L    N  + +                F    
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGI------------EPNAFEG-- 76

Query: 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLK 561
                     S +  L L  NK+   I  ++   L +++TLNL  N ++ ++P +F +L 
Sbjct: 77  ---------ASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 562 HIESLDLSYN 571
            + SL+L+ N
Sbjct: 127 SLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 26/120 (21%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L  NS  +        L+SL  L L GN L+ S+    F+ L  L  L++  N++   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDN 113
                           L    FD    L+ L ++ N++        D L   ++LRL  N
Sbjct: 91  ----------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 512 LSLLSGLYLSCNKLIGHIPPQIGN-LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570
           L+ L+ LYL  NKL   +P  + N LT +  LNLS N L  L    F  L  ++ L L+ 
Sbjct: 51  LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 571 NKLNGKIPH----QLVELKTLE 588
           N+L   +P     +L +LK L 
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLR 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 31/151 (20%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDN----TTLYESYNNSSSL 481
           L L  N+L+        EL  L  L L  N L  S+P   F+     T L  S N   SL
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI-GNLTRIQ 540
                       P G F             L+ L  L L+ N+L   +P  +   LT+++
Sbjct: 92  ------------PNGVFDK-----------LTQLKELALNTNQL-QSLPDGVFDKLTQLK 127

Query: 541 TLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571
            L L  N L  +    F  L  ++ + L  N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           L L  N L          LT +  L L  N L  L    F+ L  +  L+LS N+L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 578 PH----QLVELKTL 587
           P+    +L +LK L
Sbjct: 92  PNGVFDKLTQLKEL 105

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 49/341 (14%), Positives = 95/341 (27%), Gaps = 42/341 (12%)

Query: 156 QLQSLSLSSSYGDGVT---FPKFLYHQHDLEYVRLS--HIKMNGEFPNWLLENNTKLATL 210
            L+ L L  S  D V+      F      L  + +S    +++      L+     L +L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 211 FL---VNDSLAGPFWLPIHSHKRLGILDISNNNIRG--HIPVEIGDVLPSLYVFNISMNA 265
            L   V               + LG    +                    L   +   +A
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 266 LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLY----- 320
           +   +P+ +     L  L+LS   +       L   C  LQ L + +     GL      
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 321 ---LTNNSLSGNIPGWLGNLTW-----LIHIIMPENHLEGPIPVEFCQ------------ 360
              L    +  + P  +          L+ + M    LE    + FC+            
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE--SVLYFCRQMTNAALITIAR 394

Query: 361 -LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR-DLSYNLLNGSIPDWI 418
              ++    +              PL I    + ++   + L+R  LS  L +       
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH--CKDLRRLSLSGLLTDKVFEYIG 452

Query: 419 GELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSL 458
               ++  L +            +    + L+ L++ +   
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           L L  NKL          LT++  L+LS N +  L    F  L  +  L L  NKL   +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 578 PH----QLVELKTLE 588
           P+    +L +LK L 
Sbjct: 92  PNGVFDKLTQLKELA 106

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 43/291 (14%), Positives = 80/291 (27%), Gaps = 40/291 (13%)

Query: 200 LLENNTKLATLFLVNDSLAGPFWLPI-----HSHKRLGILDISNNNIRGHIPVEIGDVLP 254
             E  + L  L L    +       +          L  +++++  +       +  V  
Sbjct: 67  SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL 126

Query: 255 SLYVFNISMNALDGSIPSSFG-----NMKFLQLLDLSNNQLTGEIPEHLAVG---CVNLQ 306
                 + +N+L              +   +  L LSNN LT      L  G     ++ 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 307 FLMLSNNSLK-EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL---- 361
            L L +  L  EGL L    L  N          L  + +  N       +   +     
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRN--------RQLQELNVAYNGAGDTAALALARAAREH 238

Query: 362 YSLQILDISDNNISGS--------LPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 413
            SL++L +  N +S            +      +         +       LS    N +
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298

Query: 414 IPDWIGELS--QLSHLILGHNNLEGEVPVQLCEL----NQLQLLDLSNNSL 458
             D        +L    L  +      P +  +L     +++ L     S 
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	710
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.11
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.59
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.56
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.32

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.8e-67  Score=604.12  Aligned_cols=625  Identities=29%  Similarity=0.394  Sum_probs=420.9

Q ss_pred             eecCCCCCCCc---cchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC----------CcccccEEe
Q 005168            2 LNLSGNSFNNT---ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID----------KFVVSKELY   68 (710)
Q Consensus         2 L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~----------~l~~l~~L~   68 (710)
                      |||+++.+++.   .+.+|.++++|+.++++.+.+. .++ ..|+.+++|++|+|++|.++          ++++|++|+
T Consensus        55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~  132 (768)
T 3rgz_A           55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN  132 (768)
T ss_dssp             EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEE
T ss_pred             EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEE
Confidence            67777777776   5566666666666666666554 343 45666666666666666443          445566666


Q ss_pred             cCCCcceeecCHHhhcCCCCCCEEEccCCcCC-----------CCCCCcEEEccccccccccCcccccCCCCCcEEEccC
Q 005168           69 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKID-----------NLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKN  137 (710)
Q Consensus        69 L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~  137 (710)
                      |++|.+.+.+|...+.++++|++|++++|+++           ++++|++|++++|.+++..+   +..+++|++|++++
T Consensus       133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~  209 (768)
T 3rgz_A          133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSS  209 (768)
T ss_dssp             CCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCS
T ss_pred             CcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcC
Confidence            66666665555522356666666666666543           23566666666666654322   35566666666666


Q ss_pred             CcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc
Q 005168          138 NQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL  217 (710)
Q Consensus       138 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  217 (710)
                      |++....+.    +...++|++|++ +++.+.+.+|..+..+++|++|++++|.+++..|..   .+++|++|++++|++
T Consensus       210 n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          210 NNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF  281 (768)
T ss_dssp             SCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred             CcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence            665543322    334446666666 555555556666666666666666666666555543   456666666666666


Q ss_pred             cccCccCccCC-CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCcc-CcCCCCCCEEeccCCccCCcCC
Q 005168          218 AGPFWLPIHSH-KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLTGEIP  295 (710)
Q Consensus       218 ~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-f~~l~~L~~L~Ls~n~l~~~i~  295 (710)
                      .+..|..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|.. |.++++|++|++++|.+++.+|
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            65555555443 66666666666666555555443 566666666666665444433 5666666666666666655555


Q ss_pred             hhhhcCCC-CCcEEEccCCCCc---------------CeeeccCccCccCcCccccCCCccceeeCccCccccccchhhc
Q 005168          296 EHLAVGCV-NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC  359 (710)
Q Consensus       296 ~~~~~~l~-~L~~L~Ls~n~l~---------------~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  359 (710)
                      ..+.. ++ +|++|++++|.+.               +.+++++|.+++.+|..+..+++|++|++++|.+++..|..|.
T Consensus       361 ~~l~~-l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          361 ESLTN-LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             TTHHH-HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             HHHHh-hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence            55442 33 6666666666542               2356666666667777788888888888888888777777788


Q ss_pred             CCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccc-----------cCCCccCcccCChhhhcCCCccEE
Q 005168          360 QLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHL  427 (710)
Q Consensus       360 ~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-----------~l~~n~~~~~~~~~~~~l~~L~~L  427 (710)
                      .+++|++|++++|.+.+..+..+. +++|++|++++|.+++..+.           ++++|.+.+.+|.+++.+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            888888888888888777666665 77788888888877765443           677888888999999999999999


Q ss_pred             ecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccc--c---------ccee--ec--
Q 005168          428 ILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKF--E---------ISFF--IE--  492 (710)
Q Consensus       428 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~--~~--  492 (710)
                      ++++|++.+.+|..+..+++|+.|++++|+++|.+|..+...................  +         ....  ..  
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999998775543221111110000000  0         0000  00  


Q ss_pred             ----------CCCcceeeccccc--eecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCC
Q 005168          493 ----------GPQGDFTTKNIAY--IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL  560 (710)
Q Consensus       493 ----------~~~~~~~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  560 (710)
                                .............  ......++.|+.|+|++|++++.+|..|+++++|+.|+|++|.+++.+|+.|+++
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                      0000000000000  0011236789999999999999999999999999999999999999999999999


Q ss_pred             ccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 005168          561 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEAS  640 (710)
Q Consensus       561 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~  640 (710)
                      ++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|.. .++.++....+.|||.+|+.|+..|.......+..
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~  758 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH  758 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence            99999999999999999999999999999999999999999985 68889999999999999999988897665555554


Q ss_pred             CC
Q 005168          641 IG  642 (710)
Q Consensus       641 ~~  642 (710)
                      +.
T Consensus       759 ~~  760 (768)
T 3rgz_A          759 HQ  760 (768)
T ss_dssp             --
T ss_pred             CC
Confidence            33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.6e-61  Score=554.55  Aligned_cols=595  Identities=25%  Similarity=0.360  Sum_probs=505.3

Q ss_pred             CCCCEEECCCCccccc---cChhhhcCCCCCCEEeCCCCCC-------CCcccccEEecCCCcceeecCH-HhhcCCCCC
Q 005168           21 SSLRSLNLNGNSLEGS---IDVKEFDSLRDLEELDIGENKI-------DKFVVSKELYLDDTGFKGTLDI-REFDSFNNL   89 (710)
Q Consensus        21 ~~L~~L~Ls~n~i~~~---i~~~~f~~l~~L~~L~Ls~n~l-------~~l~~l~~L~L~~~~~~~~i~~-~~~~~l~~L   89 (710)
                      .+++.|+|+++.+.|.   ++ .+|.++++|+.++++.+.+       .++++|++|+|++|.+.|.+|. ..+.++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            5899999999999876   76 7899999999999999854       3789999999999999988775 268999999


Q ss_pred             CEEEccCCcCC---------CCCCCcEEEccccccccccCccc--ccCCCCCcEEEccCCcccccccccccCCCCCCccc
Q 005168           90 EVLDMSYNKID---------NLVVPQELRLSDNHFRIPISLEP--LFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQ  158 (710)
Q Consensus        90 ~~L~Ls~n~l~---------~~~~L~~L~L~~~~l~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~  158 (710)
                      ++|++++|.+.         .+++|++|++++|.+++..+...  +.++++|+.|++++|.+....+     ....++|+
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~  203 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLE  203 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCC
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCC
Confidence            99999999764         34889999999999986544221  6789999999999999875443     25567999


Q ss_pred             EEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEccc
Q 005168          159 SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN  238 (710)
Q Consensus       159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  238 (710)
                      +|++ .++.+.+.+|. +..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|..  .+++|++|++++
T Consensus       204 ~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~  278 (768)
T 3rgz_A          204 FLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE  278 (768)
T ss_dssp             EEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred             EEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence            9999 88888887777 8899999999999999998888876 79999999999999998877665  899999999999


Q ss_pred             CcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCc--
Q 005168          239 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK--  316 (710)
Q Consensus       239 n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~--  316 (710)
                      |.+++.+|..++..+++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|...+.++++|++|++++|.+.  
T Consensus       279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred             CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence            999999999888766999999999999999999999999999999999999988999988889999999999999875  


Q ss_pred             ------------CeeeccCccCccCcCccccC--CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168          317 ------------EGLYLTNNSLSGNIPGWLGN--LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF  382 (710)
Q Consensus       317 ------------~~l~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  382 (710)
                                  +.+++++|.+++..+..+..  +++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  438 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL  438 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence                        33899999999988888777  8899999999999999999999999999999999999998888877


Q ss_pred             C-CCCcceEEccCccccccccc-----------cCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCE
Q 005168          383 H-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL  450 (710)
Q Consensus       383 ~-~~~L~~L~l~~n~l~~~~~~-----------~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  450 (710)
                      . +++|+.|++++|.+.+..+.           ++++|.+.+..|.++..+++|++|++++|++++..|.++..+++|++
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            7 89999999999999876554           78899999999999999999999999999999999999999999999


Q ss_pred             EEccCCcccccCCCCcccccccccccCCCCC-ccccccceeecCCCc--------cee---eccc-------------cc
Q 005168          451 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSL-DEKFEISFFIEGPQG--------DFT---TKNI-------------AY  505 (710)
Q Consensus       451 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~---~~~~-------------~~  505 (710)
                      |++++|++++.+|..+..+..++........ ....+...+......        .+.   ....             ..
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            9999999999999988877655444332211 111111110000000        000   0000             00


Q ss_pred             --eecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168          506 --IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE  583 (710)
Q Consensus       506 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~  583 (710)
                        -.....++.+..++++.|.+.+..|..|..+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+|+.+..
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence              000122345556677788888888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          584 LKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       584 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +++|+.||+++|++++.+|..+..+..++.+++..|+.....|
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            9999999999999999999999999999999999998765544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-58  Score=526.31  Aligned_cols=587  Identities=22%  Similarity=0.209  Sum_probs=401.7

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG   73 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~   73 (710)
                      |||++|.|+++.+.+|.++++|++|++++|.+++ ++.++|+++++|++|+|++|.++        ++++|++|++++|.
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence            6667777776666667777777777777776663 33366667777777777766554        45566666666666


Q ss_pred             ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccc--cCCCCCcEEEccCCccccc
Q 005168           74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPL--FNHSRLKIFHAKNNQMNAE  143 (710)
Q Consensus        74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l--~~l~~L~~L~L~~n~~~~~  143 (710)
                      ++ .+++..|.++++|++|++++|.+++.        ++|++|++++|.+++. +...+  ..+++|+.|++++|++...
T Consensus       109 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          109 IQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             CC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             cC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCccccc
Confidence            65 34433666666666666666655432        5666666666666532 21222  2345666666666666554


Q ss_pred             ccccccCCCCCCcccEEEecCCCCCCCccChhcc---CCCCCCEEEccCCcCcccCChhHhhcCC--CCcEEEccCCccc
Q 005168          144 ITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY---HQHDLEYVRLSHIKMNGEFPNWLLENNT--KLATLFLVNDSLA  218 (710)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~ls~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~  218 (710)
                      .+..   +....+++.+++ .++.........+.   ..++|+.|++++|.+.+..|..+ ..++  +|++|++++|.+.
T Consensus       187 ~~~~---~~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          187 SPGC---FHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CTTG---GGGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCC
T ss_pred             Chhh---hhhhhhhhhhhc-cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh-hccCcCCCCEEECCCCCcC
Confidence            4433   122335555555 33332211111111   23677888888888777666655 4443  4888888888888


Q ss_pred             ccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcc---------cCCccCcCCCCCCEEeccCCc
Q 005168          219 GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG---------SIPSSFGNMKFLQLLDLSNNQ  289 (710)
Q Consensus       219 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~f~~l~~L~~L~Ls~n~  289 (710)
                      +..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|...+         +....|.++++|++|++++|.
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            77777788888888888888888855454444 37788888888765432         222367788888888888888


Q ss_pred             cCCcCChhhhcCCCCCcEEEccCCCC-----------------cCeeeccCccCccCcCccccCCCccceeeCccCcccc
Q 005168          290 LTGEIPEHLAVGCVNLQFLMLSNNSL-----------------KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG  352 (710)
Q Consensus       290 l~~~i~~~~~~~l~~L~~L~Ls~n~l-----------------~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  352 (710)
                      +. .++...|.++++|++|++++|.+                 .+.+++++|++++..+.+|..+++|++|++++|.+.+
T Consensus       341 l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          341 IP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             BC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             cC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            87 56666777888888888888753                 1347778888888888899999999999999999986


Q ss_pred             ccc-hhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecC
Q 005168          353 PIP-VEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG  430 (710)
Q Consensus       353 ~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~  430 (710)
                      ..+ ..|.++++|++|++++|++.+..+..+. +++|+.|++++|.+...           +..|.++..+++|++|+++
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----------~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-----------DSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-----------TCSSCTTTTCTTCCEEECC
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc-----------ccCCcccccCCCCCEEECC
Confidence            544 7889999999999999999988888887 88999998888876521           2567889999999999999


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceeccc
Q 005168          431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGK  510 (710)
Q Consensus       431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (710)
                      +|++++..+.+|.++++|++|++++|.+++..+..+....                                   .....
T Consensus       489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-----------------------------------~~~~~  533 (680)
T 1ziw_A          489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-----------------------------------IYFLK  533 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-----------------------------------CCTTT
T ss_pred             CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-----------------------------------chhhc
Confidence            9999988888899999999999999999865433321100                                   00012


Q ss_pred             ccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc-cCCCCCE
Q 005168          511 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV-ELKTLEV  589 (710)
Q Consensus       511 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~l~~L~~  589 (710)
                      .+++|+.|+|++|+++...+..|.++++|++|+|++|+++++++..|.++++|+.|++++|++++..++.+. .+++|+.
T Consensus       534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  613 (680)
T 1ziw_A          534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE  613 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred             CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence            256899999999999977777899999999999999999999999999999999999999999988888787 7899999


Q ss_pred             EeccCCccccccC--CCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168          590 FSVAYNNLSGEIL--EWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL  649 (710)
Q Consensus       590 L~l~~N~l~~~~~--~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  649 (710)
                      +++++|||.|.|+  .|+..|.......+.+.     .....|..|...++........+.+
T Consensus       614 l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~  670 (680)
T 1ziw_A          614 LDMRFNPFDCTCESIAWFVNWINETHTNIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSC  670 (680)
T ss_dssp             EECTTCCCCBCCCCCSSEECCSSCC-------------------------------------
T ss_pred             EEccCCCcccCCccHHHHHHHHHhcCcccccc-----cCCcEECCchHHCCCcccccChhhc
Confidence            9999999999997  45544432221111110     0112588888887776666555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-56  Score=510.52  Aligned_cols=562  Identities=22%  Similarity=0.233  Sum_probs=454.2

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG   73 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~   73 (710)
                      +|.+++.++.++. .+.  +++++|++++|.++ .++..+|.++++|++|+|++|.++        ++++|++|++++|.
T Consensus         9 ~~cs~~~L~~ip~-~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            9 ADCSHLKLTQVPD-DLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EECCSSCCSSCCS-CSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eECCCCCcccccc-ccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            6889999997664 343  79999999999999 577688999999999999999887        56889999999999


Q ss_pred             ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccc
Q 005168           74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT  145 (710)
Q Consensus        74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  145 (710)
                      ++ .+|...|.++++|++|++++|+++++        ++|++|++++|.+++. +...+.++++|+.|++++|.+....+
T Consensus        85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence            98 67776799999999999999987654        7899999999999854 44567889999999999999876655


Q ss_pred             ccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHh--hcCCCCcEEEccCCcccccCcc
Q 005168          146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLL--ENNTKLATLFLVNDSLAGPFWL  223 (710)
Q Consensus       146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~  223 (710)
                      ..+. ....++|++|++ +++.+.+..|.++..+++|+.++++++.+.+.....+.  ...++|+.|++++|.+.+..+.
T Consensus       163 ~~~~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          163 EELD-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             HHHG-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             HHhh-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            4321 234468999999 78888888888888999999999999887653332221  1358999999999999998888


Q ss_pred             CccCCCC--CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCC--------c
Q 005168          224 PIHSHKR--LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG--------E  293 (710)
Q Consensus       224 ~~~~~~~--L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~--------~  293 (710)
                      .+..++.  |++|++++|.+++..|..+ ..+++|++|++++|.+.+..|.+|.++++|+.|++++|...+        .
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~  319 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK  319 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence            8888765  9999999999994444444 458999999999999999999999999999999999875443        2


Q ss_pred             CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCC--CCCCEEEC
Q 005168          294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQL--YSLQILDI  369 (710)
Q Consensus       294 i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~l  369 (710)
                      ++...|..+++|++|++++|.+..           ..+..|.++++|++|++++|.+..  .....|..+  ++|+.|++
T Consensus       320 i~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNMEDNDIPG-----------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBCC-----------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             cChhhcccCCCCCEEECCCCccCC-----------CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence            333466789999999988887664           566677888888888888776432  233334433  47888888


Q ss_pred             CCCcCcccCCCCCC-CCCcceEEccCccccccccc------------cCCCccCcccCChhhhcCCCccEEecCCCccc-
Q 005168          370 SDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR------------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLE-  435 (710)
Q Consensus       370 s~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~------------~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-  435 (710)
                      ++|++.++.+..+. +++|+.|++++|.+.+..+.            ++++|.+.+..+..|..+++|+.|++++|.+. 
T Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  468 (680)
T 1ziw_A          389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN  468 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred             CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence            88888877777766 77888888877777643321            55666666677777777888888888888775 


Q ss_pred             -ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceeccccccc
Q 005168          436 -GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL  514 (710)
Q Consensus       436 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  514 (710)
                       +..|..|..+++|+.|++++|.+++..+..|.+                                           +++
T Consensus       469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------------------------------------l~~  505 (680)
T 1ziw_A          469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------------------------------------------LEK  505 (680)
T ss_dssp             TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------CTT
T ss_pred             cccCCcccccCCCCCEEECCCCCCCcCChhhhcc-------------------------------------------ccc
Confidence             456777888888888888888888776666665                                           448


Q ss_pred             ccEEECcCCcCCCCCC--------ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCC
Q 005168          515 LSGLYLSCNKLIGHIP--------PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT  586 (710)
Q Consensus       515 L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~  586 (710)
                      |+.|++++|.+++..+        ..|.++++|++|+|++|+++.++++.|.++++|+.|++++|++++..+..|..+++
T Consensus       506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  585 (680)
T 1ziw_A          506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS  585 (680)
T ss_dssp             CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence            9999999999986532        23789999999999999999998889999999999999999999888888899999


Q ss_pred             CCEEeccCCccccccCCCcc-ccccCCcccccCCCCCCCCC
Q 005168          587 LEVFSVAYNNLSGEILEWTA-QFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       587 L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~  626 (710)
                      |+.|++++|.+++..+..+. .+..+..+++.+|||.|+|+
T Consensus       586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999999988777665 67889999999999999965

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-56  Score=516.72  Aligned_cols=554  Identities=21%  Similarity=0.194  Sum_probs=408.1

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCC---------CCCcccccEEecCCC
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK---------IDKFVVSKELYLDDT   72 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~---------l~~l~~l~~L~L~~~   72 (710)
                      .|.+++.++.++.    -.++|++|+|++|.|++ +...+|.++++|++|+|++|.         +.++++|++|+|++|
T Consensus         9 ~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ----VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEESCCCSSCCCS----SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEccCCCCCCCCC----CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            4667777776665    34678888888888773 444778888888888888772         236677778888888


Q ss_pred             cceeecCHHhhcCCCCCCEEEccCCcCCC----------CCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168           73 GFKGTLDIREFDSFNNLEVLDMSYNKIDN----------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA  142 (710)
Q Consensus        73 ~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~----------~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~  142 (710)
                      .+.+..|. .|.++++|++|+|++|.+++          +++|++|++++|.+++..+...+.++++|+.|++++|.+..
T Consensus        84 ~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            87755555 88888888888888887764          26788888888888755444568889999999999998877


Q ss_pred             cccccccCCCCCCcccEEEecCCCCCCCccChhccCCCC------CCEEEccCCcCcccCChhHhhc--CCCCcEEEccC
Q 005168          143 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD------LEYVRLSHIKMNGEFPNWLLEN--NTKLATLFLVN  214 (710)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------L~~L~ls~~~~~~~~~~~~~~~--l~~L~~L~l~~  214 (710)
                      ..+..+..+.. ++|+.|++ ..+.+.+..|..+..+++      |+.|++++|.+++..+..+...  .++++.+.+..
T Consensus       163 ~~~~~l~~l~~-~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          163 VCEHELEPLQG-KTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCSGGGHHHHH-CSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             eCHHHcccccC-CccceEEC-CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            66554322211 58889999 777777777666555444      8999999998887777665332  35677887763


Q ss_pred             Cc---------ccccCccCccCC--CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEE
Q 005168          215 DS---------LAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL  283 (710)
Q Consensus       215 ~~---------~~~~~~~~~~~~--~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L  283 (710)
                      +.         +.+.....|..+  ++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.++.+.+|.++++|++|
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  319 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL  319 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence            32         222233344443  678888888888884 444444457888888888888888888888888888888


Q ss_pred             eccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC
Q 005168          284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS  363 (710)
Q Consensus       284 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  363 (710)
                      ++++|.+. .++...|.++++|++|++++|.+..           ..+..|.++++|++|++++|.+++.     ..+++
T Consensus       320 ~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~  382 (844)
T 3j0a_A          320 NLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-----------IQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS  382 (844)
T ss_dssp             EEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCC-----------CCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred             ECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCc-----------cChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence            88888887 6666666688888888887776653           5566788888888888888888743     23778


Q ss_pred             CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc-cc
Q 005168          364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QL  442 (710)
Q Consensus       364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~  442 (710)
                      |+.|++++|++..++..   ..+++.+++++|.+.+.            ..+..+..+++|++|++++|++++..+. .+
T Consensus       383 L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  447 (844)
T 3j0a_A          383 IPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------DILYFLLRVPHLQILILNQNRFSSCSGDQTP  447 (844)
T ss_dssp             CSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred             cchhccCCCCccccccc---ccccceeecccCccccC------------chhhhhhcCCccceeeCCCCccccccccccc
Confidence            88888888888755433   45678887777776532            1123455789999999999999865443 45


Q ss_pred             CCCCCCCEEEccCCcccccCC-----CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccE
Q 005168          443 CELNQLQLLDLSNNSLHGSIP-----PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG  517 (710)
Q Consensus       443 ~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  517 (710)
                      ..+++|+.|++++|.+++..+     ..|.+                                           +++|+.
T Consensus       448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-------------------------------------------l~~L~~  484 (844)
T 3j0a_A          448 SENPSLEQLFLGENMLQLAWETELCWDVFEG-------------------------------------------LSHLQV  484 (844)
T ss_dssp             CSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-------------------------------------------BCCEEC
T ss_pred             ccCCccccccCCCCccccccccccchhhhcC-------------------------------------------cccccE
Confidence            678999999999999874332     33333                                           458999


Q ss_pred             EECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcc
Q 005168          518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL  597 (710)
Q Consensus       518 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l  597 (710)
                      |+|++|.+++..|..|.++++|++|+|++|+++++++..+.  ++|+.|+|++|++++..|+.+   .+|+.+++++||+
T Consensus       485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~  559 (844)
T 3j0a_A          485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF  559 (844)
T ss_dssp             CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred             EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence            99999999999999999999999999999999999888877  899999999999999888765   4789999999999


Q ss_pred             ccccCCCccccccCCcccccCCCCCCCCCCC-CCCCCCCCCCccCCCCCCCcc
Q 005168          598 SGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNL  649 (710)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~  649 (710)
                      .|.|+.  .++..|   ....+...|+.+.. .|..|....+.+........|
T Consensus       560 ~C~c~~--~~f~~~---~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          560 ICECEL--STFINW---LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             CCSSSC--CSHHHH---HHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             cccccc--HHHHHH---HHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence            998863  222222   12334455555444 798888887776665555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.3e-55  Score=494.20  Aligned_cols=542  Identities=19%  Similarity=0.177  Sum_probs=345.0

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR   81 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~   81 (710)
                      |||++|.|+++.+.+|.++++|++|++++|.+.+ +.+++|+++++|++|+|+                +|.+++..|. 
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls----------------~n~l~~~~~~-   99 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT----------------ANPLIFMAET-   99 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT----------------TCCCSEECTT-
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC----------------CCcccccChh-
Confidence            4455555555444455555555555555554442 222445555555555555                4444433333 


Q ss_pred             hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP  153 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~  153 (710)
                      .|.++++|++|++++|+++++        ++|++|++++|.+++ ++...+..+++|+.|++++|.+....+..+   ..
T Consensus       100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~  175 (606)
T 3t6q_A          100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDM---SS  175 (606)
T ss_dssp             TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHH---HT
T ss_pred             hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhh---hh
Confidence            566666666666666655542        556666666666653 222233446666666666666655444332   22


Q ss_pred             CCccc--EEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc-----cccCccCcc
Q 005168          154 NFQLQ--SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL-----AGPFWLPIH  226 (710)
Q Consensus       154 ~~~L~--~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~  226 (710)
                      ..+++  .|++ .++.+.+..|..+ ....|+.|++++|..   .+..+ ..+.+++...+.-..+     ....+..+.
T Consensus       176 l~~L~~l~L~l-~~n~l~~~~~~~~-~~~~L~~L~l~~~~~---~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~  249 (606)
T 3t6q_A          176 LQQATNLSLNL-NGNDIAGIEPGAF-DSAVFQSLNFGGTQN---LLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFE  249 (606)
T ss_dssp             TTTCCSEEEEC-TTCCCCEECTTTT-TTCEEEEEECTTCSC---HHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred             hcccceeEEec-CCCccCccChhHh-hhccccccccCCchh---HHHHh-hhccccchhheechhhccccccccChhHhc
Confidence            33444  5666 5555554444433 335666777766642   22222 3444433333221111     111222233


Q ss_pred             CCC--CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168          227 SHK--RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN  304 (710)
Q Consensus       227 ~~~--~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  304 (710)
                      .+.  +|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+.++++|++|++++|.+. .++...+.++++
T Consensus       250 ~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~  326 (606)
T 3t6q_A          250 GLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPS  326 (606)
T ss_dssp             GGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTT
T ss_pred             hhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCc
Confidence            332  5667777777776 455554444677777777777776 45566677777777777777776 454445556777


Q ss_pred             CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc--chhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168          305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI--PVEFCQLYSLQILDISDNNISGSLPSCF  382 (710)
Q Consensus       305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~  382 (710)
                      |++|++++|.+..          ...+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+
T Consensus       327 L~~L~l~~n~~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  396 (606)
T 3t6q_A          327 LTHLSIKGNTKRL----------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF  396 (606)
T ss_dssp             CSEEECCSCSSCC----------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred             CCEEECCCCCccc----------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence            7777776665542          022344667777777777777776554  5667777777777777777777766666


Q ss_pred             C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccccc
Q 005168          383 H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS  461 (710)
Q Consensus       383 ~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  461 (710)
                      . +++|++|++++|.+.+.            ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus       397 ~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          397 KECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             TTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             cCCccCCeEECCCCcCCCc------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            5 67777776666665431            1234477889999999999999988888999999999999999998763


Q ss_pred             C-C--CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCC
Q 005168          462 I-P--PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTR  538 (710)
Q Consensus       462 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  538 (710)
                      . +  ..+..                                           +++|+.|++++|.+++..|..|.++++
T Consensus       465 ~~~~~~~~~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          465 NIQKTNSLQT-------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKM  501 (606)
T ss_dssp             EECSSCGGGG-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ccccchhhcc-------------------------------------------CCCccEEECCCCccCccChhhhccccC
Confidence            2 2  23333                                           558999999999999999999999999


Q ss_pred             CCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC-CccccccCCccccc
Q 005168          539 IQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYE  617 (710)
Q Consensus       539 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~  617 (710)
                      |++|+|++|+++++.|+.|.++++| .|++++|++++..|+.+..+++|+.+++++|++.|.|+. |+..|..-......
T Consensus       502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~  580 (606)
T 3t6q_A          502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLE  580 (606)
T ss_dssp             CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEE
T ss_pred             CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccccc
Confidence            9999999999999999999999999 999999999999999999999999999999999999873 22222111111111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168          618 GNTFLCGLPLPICRSPATMSEASIGNERD  646 (710)
Q Consensus       618 ~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  646 (710)
                      +      .....|..|...++..+...+.
T Consensus       581 ~------~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          581 D------TEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             C------GGGCBEEESGGGTTCBGGGCCC
T ss_pred             C------CCCCeeCCchHhCCCeeeeeec
Confidence            0      1112578887777775555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-51  Score=466.78  Aligned_cols=524  Identities=21%  Similarity=0.219  Sum_probs=410.2

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR   81 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~   81 (710)
                      +|.++..++.++ ..+.  +.+++|++++|.++ .++..+|.++++|++|+|++|.++                 .+++.
T Consensus        17 ~~c~~~~l~~iP-~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~-----------------~~~~~   75 (606)
T 3t6q_A           17 YNCENLGLNEIP-GTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY-----------------WIHED   75 (606)
T ss_dssp             EECTTSCCSSCC-TTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCC-----------------EECTT
T ss_pred             EECCCCCcccCc-CCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccc-----------------eeChh
Confidence            577778888554 4443  37899999999998 455589999999999999988876                 55555


Q ss_pred             hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168           82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP  153 (710)
Q Consensus        82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~  153 (710)
                      +|.++++|++|++++|++++.        ++|++|++++|.+++ ++...+.++++|++|++++|++.......   ..+
T Consensus        76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~  151 (606)
T 3t6q_A           76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFP  151 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCC
T ss_pred             hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc---ccC
Confidence            899999999999999987543        677777777777763 33345677777777777777766543222   223


Q ss_pred             CCcccEEEecCCCCCCCccChhccCCCCCC--EEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCC
Q 005168          154 NFQLQSLSLSSSYGDGVTFPKFLYHQHDLE--YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL  231 (710)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  231 (710)
                      .++|++|++ .++.+.+..+..+..+++|+  .|++++|.+.+..|..+  ....|+.|++++|..   .+..+..+..+
T Consensus       152 l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~l~~~  225 (606)
T 3t6q_A          152 TEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQN---LLVIFKGLKNS  225 (606)
T ss_dssp             CTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSC---HHHHHHHTTTC
T ss_pred             CcccCEEEc-ccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchh---HHHHhhhcccc
Confidence            556777777 66666655566666666666  66777777666555543  345667777766641   12223333333


Q ss_pred             CEEEcccCcCc----ccCChhhhhcCC--CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCC
Q 005168          232 GILDISNNNIR----GHIPVEIGDVLP--SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNL  305 (710)
Q Consensus       232 ~~L~ls~n~i~----~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L  305 (710)
                      +...+.-..+.    ..++...+..+.  +|+.|++++|.+.++.+..|.++++|++|++++|.++ .+|..+. ++++|
T Consensus       226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L  303 (606)
T 3t6q_A          226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTL  303 (606)
T ss_dssp             EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTC
T ss_pred             chhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccC
Confidence            32222211111    023333333333  7999999999999998889999999999999999998 8888754 79999


Q ss_pred             cEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc-chhhcCCCCCCEEECCCCcCcccC--CCCC
Q 005168          306 QFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL--PSCF  382 (710)
Q Consensus       306 ~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~--~~~~  382 (710)
                      ++|++++|.+..           ..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..  +..+
T Consensus       304 ~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          304 KKLVLSANKFEN-----------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             CEEECTTCCCSB-----------GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             CEEECccCCcCc-----------CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence            999998888764           56778999999999999999988555 455999999999999999999875  5555


Q ss_pred             C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc-ccCCCCCCCEEEccCCcccc
Q 005168          383 H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHG  460 (710)
Q Consensus       383 ~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~  460 (710)
                      . +++|++|++++|.+.+             ..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+.+
T Consensus       373 ~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  439 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI  439 (606)
T ss_dssp             TTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred             ccCCCCCEEECCCCcCCc-------------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence            5 8999999887776653             6677888999999999999999876654 48999999999999999998


Q ss_pred             cCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC---CCccccccC
Q 005168          461 SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH---IPPQIGNLT  537 (710)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~  537 (710)
                      ..|..+..                                           +++|+.|++++|++++.   .+..+..++
T Consensus       440 ~~~~~~~~-------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~  476 (606)
T 3t6q_A          440 SSEQLFDG-------------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLG  476 (606)
T ss_dssp             TCTTTTTT-------------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred             cCHHHHhC-------------------------------------------CCCCCEEECCCCCCCccccccchhhccCC
Confidence            88888766                                           44899999999999863   346799999


Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCccccc
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE  617 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  617 (710)
                      +|++|+|++|+++++.|..|.++++|++|++++|++++..|+.+..++.| .|++++|++++..|..+..+..++.+++.
T Consensus       477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            99999999999999999999999999999999999999999999999999 99999999999888888889999999999


Q ss_pred             CCCCCCCCC
Q 005168          618 GNTFLCGLP  626 (710)
Q Consensus       618 ~n~~~c~~~  626 (710)
                      +||+.|+|+
T Consensus       556 ~N~~~c~c~  564 (606)
T 3t6q_A          556 QNPLDCTCS  564 (606)
T ss_dssp             TCCEECSGG
T ss_pred             CCCccccCC
Confidence            999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-51  Score=465.72  Aligned_cols=556  Identities=18%  Similarity=0.147  Sum_probs=419.9

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG   73 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~   73 (710)
                      +|.+++.++.++.. +.  +++++|++++|.++ .++..+|.++++|++|++++|.++        ++++|++|+|++|.
T Consensus        16 ~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           16 YQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             EECTTSCCSSCCTT-SC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEccCCCcccCCCC-CC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            67788888866553 32  78888888888888 455578888888888888888765        56788888888888


Q ss_pred             ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccc
Q 005168           74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT  145 (710)
Q Consensus        74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  145 (710)
                      +++..|. .|.++++|++|++++|.+++.        ++|++|++++|.+++......+.++++|+.|++++|++....+
T Consensus        92 l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           92 IQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             ccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            8754455 899999999999999987654        7899999999988742223568899999999999999887765


Q ss_pred             ccccCCCCCCc-ccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccc-----
Q 005168          146 ESHSLTAPNFQ-LQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG-----  219 (710)
Q Consensus       146 ~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----  219 (710)
                      ..+..+..... +.++++ .++.+....+.. +...+|++|++++|.+++......+.+++.++.+.+..+.+.+     
T Consensus       171 ~~~~~l~~L~~~l~~L~l-~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDM-SLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTHHHHHCTTCCCEEEC-TTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhccccccceeec-cCCCcceeCccc-ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            54333222222 558999 777766444444 4445899999999988754433444889999988876544332     


Q ss_pred             -cCccCccCCC--CCCEEEc-ccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCC
Q 005168          220 -PFWLPIHSHK--RLGILDI-SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP  295 (710)
Q Consensus       220 -~~~~~~~~~~--~L~~L~l-s~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~  295 (710)
                       ..+..+..+.  .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. .| .+..+++|++|++++|.+. .+|
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp  323 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP  323 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC
T ss_pred             ccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc
Confidence             1122223332  3566777 66778766666  4558999999999999975 44 7899999999999999995 898


Q ss_pred             hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc--cchhhcCCCCCCEEECCCCc
Q 005168          296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP--IPVEFCQLYSLQILDISDNN  373 (710)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~  373 (710)
                      . +  .+++|++|++++|....             +..+..+++|++|++++|.+++.  .+..+..+++|++|++++|.
T Consensus       324 ~-~--~l~~L~~L~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  387 (606)
T 3vq2_A          324 T-L--DLPFLKSLTLTMNKGSI-------------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG  387 (606)
T ss_dssp             C-C--CCSSCCEEEEESCSSCE-------------ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred             c-C--CCCccceeeccCCcCcc-------------chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence            3 3  79999999999986442             22577899999999999999876  37889999999999999999


Q ss_pred             CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC-hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEE
Q 005168          374 ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP-DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD  452 (710)
Q Consensus       374 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (710)
                      +.+.+.....+++|+.|++++|.+.+             ..| ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       388 l~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          388 AIIMSANFMGLEELQHLDFQHSTLKR-------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             EEEECCCCTTCTTCCEEECTTSEEES-------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             cccchhhccCCCCCCeeECCCCccCC-------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            99877444448999999888887664             444 5788899999999999999998999999999999999


Q ss_pred             ccCCcccc-cCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCc
Q 005168          453 LSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP  531 (710)
Q Consensus       453 L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  531 (710)
                      +++|.+++ .+|..+..+                                           ++|+.|++++|.+++..|.
T Consensus       455 l~~n~l~~~~~~~~~~~l-------------------------------------------~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANT-------------------------------------------TNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             CTTCEEGGGEECSCCTTC-------------------------------------------TTCCEEECTTSCCCEECTT
T ss_pred             CCCCcCCCcchHHhhccC-------------------------------------------CCCCEEECCCCcCCccChh
Confidence            99999987 467777664                                           4999999999999999999


Q ss_pred             cccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC-CCCEEeccCCccccccCCCcccccc
Q 005168          532 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEILEWTAQFAT  610 (710)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~  610 (710)
                      .|.++++|++|+|++|+++++.|..|.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.|+.  .++..
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~--~~~~~  568 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH--QKFLQ  568 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT--HHHHT
T ss_pred             hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc--HHHHH
Confidence            9999999999999999999999999999999999999999999 6666688887 699999999999999874  22222


Q ss_pred             CCcccccCCCCCC-CCCCCCCCCCCCCCCccCCCCCCCc
Q 005168          611 FNKSSYEGNTFLC-GLPLPICRSPATMSEASIGNERDDN  648 (710)
Q Consensus       611 ~~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~  648 (710)
                      |...    +.... +.....|..|...++..+.+++.+.
T Consensus       569 ~l~~----~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          569 WVKE----QKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             TTTT----SSSSBSSGGGCCCC-----------------
T ss_pred             HHHc----CcccccCCccceeCCChHhCCCEeeeccccc
Confidence            2111    11111 1111268888888777666655443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-51  Score=479.91  Aligned_cols=513  Identities=22%  Similarity=0.171  Sum_probs=387.2

Q ss_pred             CEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEcc
Q 005168           24 RSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMS   95 (710)
Q Consensus        24 ~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls   95 (710)
                      +..+.+++.++ .+| .   -.++|++|+|++|.|+        ++++|++|+|++|...+.+++.+|.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            46778888888 788 3   5689999999999886        678889999999977778866689999999999999


Q ss_pred             CCcCCCC--------CCCcEEEccccccccccCc-ccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCC
Q 005168           96 YNKIDNL--------VVPQELRLSDNHFRIPISL-EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSY  166 (710)
Q Consensus        96 ~n~l~~~--------~~L~~L~L~~~~l~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (710)
                      +|.+.+.        ++|++|+|++|.+++..+. ..+.++++|+.|++++|.+....+..  .+...++|++|++ +++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~L~L-s~N  158 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDF-SSN  158 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCEEEE-ESS
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCEEEC-CCC
Confidence            9876543        6777777777777653332 23667777777777777765543221  1344557777777 666


Q ss_pred             CCCCccChhccCC--CCCCEEEccCCcCcccCChhHhhcCCC------CcEEEccCCcccccCccCccC---CCCCCEEE
Q 005168          167 GDGVTFPKFLYHQ--HDLEYVRLSHIKMNGEFPNWLLENNTK------LATLFLVNDSLAGPFWLPIHS---HKRLGILD  235 (710)
Q Consensus       167 ~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~  235 (710)
                      .+.+..+..+..+  ++|+.|+++.|.+.+..|..+ ..+++      |+.|++++|.+.+..+..+..   ...++.+.
T Consensus       159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             cCCeeCHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            6666666666554  677777777777766555433 23333      777777777666555544432   24566666


Q ss_pred             cccCc---------CcccCChhhhhc--CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168          236 ISNNN---------IRGHIPVEIGDV--LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN  304 (710)
Q Consensus       236 ls~n~---------i~~~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  304 (710)
                      ++.+.         +. ......+..  .++|+.|++++|.+.+..+..|..+++|+.|++++|.++ .++...|.++++
T Consensus       238 l~~~~~~~~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~  315 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDN  315 (844)
T ss_dssp             CCSSCCBCSSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSS
T ss_pred             cccccccccccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCC
Confidence            65322         22 111111111  267889999999888888888888999999999999888 666667778888


Q ss_pred             CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCC
Q 005168          305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHP  384 (710)
Q Consensus       305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~  384 (710)
                      |++|++++|.+..           ..+..|.++++|++|++++|.+....+..|.++++|++|++++|.++++..    +
T Consensus       316 L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~  380 (844)
T 3j0a_A          316 LQVLNLSYNLLGE-----------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----I  380 (844)
T ss_dssp             CCEEEEESCCCSC-----------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----C
T ss_pred             CCEEECCCCCCCc-----------cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----C
Confidence            9988887777654           567788889999999999999888888888889999999999998875433    6


Q ss_pred             CCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCcccccCC
Q 005168          385 LSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIP  463 (710)
Q Consensus       385 ~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~  463 (710)
                      ++|+.+++++|.++.              +|..   ..+++.|++++|++++... ..+..+++|+.|++++|++++..+
T Consensus       381 ~~L~~L~l~~N~l~~--------------l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  443 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVT--------------LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG  443 (844)
T ss_dssp             CSCSEEEEESCCCCC--------------CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred             CCcchhccCCCCccc--------------cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence            788888888887762              2322   4679999999999986543 235689999999999999986544


Q ss_pred             CC-cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC-----CCCCccccccC
Q 005168          464 PC-FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI-----GHIPPQIGNLT  537 (710)
Q Consensus       464 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~  537 (710)
                      .. +..                                           +++|+.|++++|.++     +..+..|.+++
T Consensus       444 ~~~~~~-------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~  480 (844)
T 3j0a_A          444 DQTPSE-------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLS  480 (844)
T ss_dssp             SSSSCS-------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred             cccccc-------------------------------------------CCccccccCCCCccccccccccchhhhcCcc
Confidence            32 221                                           458999999999997     44456789999


Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCccccc
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE  617 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  617 (710)
                      +|++|+|++|.++++++..|.++++|+.|+|++|++++..+..+.  ++|+.|++++|.+++..|..+   ..+..+++.
T Consensus       481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~  555 (844)
T 3j0a_A          481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT  555 (844)
T ss_dssp             CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred             cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence            999999999999999999999999999999999999987777665  899999999999999888754   467788899


Q ss_pred             CCCCCCCCCC
Q 005168          618 GNTFLCGLPL  627 (710)
Q Consensus       618 ~n~~~c~~~~  627 (710)
                      +||+.|+|+.
T Consensus       556 ~Np~~C~c~~  565 (844)
T 3j0a_A          556 HNKFICECEL  565 (844)
T ss_dssp             EECCCCSSSC
T ss_pred             CCCccccccc
Confidence            9999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-49  Score=448.22  Aligned_cols=500  Identities=18%  Similarity=0.155  Sum_probs=369.2

Q ss_pred             CCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEE
Q 005168           22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLD   93 (710)
Q Consensus        22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~   93 (710)
                      .-++++.+++.++ .+| ..+.  +++++|+|++|.++        ++++|++|++++|.+++..|. +|.++++|++|+
T Consensus        12 ~~~~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~   86 (606)
T 3vq2_A           12 PNITYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLI   86 (606)
T ss_dssp             TTTEEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred             CCCceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeE
Confidence            3468999999998 788 4443  78999999999876        556677777777777633333 677777777777


Q ss_pred             ccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-cc
Q 005168           94 MSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TF  172 (710)
Q Consensus        94 Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~  172 (710)
                      +++|++++.                 ....+.++++|++|++++|++....+..   +....+|++|++ +++.+.+ .+
T Consensus        87 Ls~n~l~~~-----------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~l  145 (606)
T 3vq2_A           87 LTGNPIQSF-----------------SPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNV-AHNFIHSCKL  145 (606)
T ss_dssp             CTTCCCCCC-----------------CTTSSTTCTTCCEEECTTSCCCCSSSSC---CTTCTTCCEEEC-CSSCCCCCCC
T ss_pred             CCCCccccc-----------------ChhhcCCcccCCEEEccCCccccccccc---cCCCCCCCEEeC-CCCcccceec
Confidence            777765543                 2234555666666666666655443322   333446666666 4444443 45


Q ss_pred             ChhccCCCCCCEEEccCCcCcccCChhHhhcCCC----CcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChh
Q 005168          173 PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVE  248 (710)
Q Consensus       173 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  248 (710)
                      |..+..+++|++|++++|.+++..+..+ ..+.+    +++|++++|.+.+..+..+... +|++|++++|.+++.....
T Consensus       146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~  223 (606)
T 3vq2_A          146 PAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT  223 (606)
T ss_dssp             CGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH
T ss_pred             hHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH
Confidence            6666666666666666666665444433 23332    3366666666665555555444 6666666666654222222


Q ss_pred             hhhcCCCccEE--------------------------------Ec-cCCcCcccCCccCcCCCCCCEEeccCCccCCcCC
Q 005168          249 IGDVLPSLYVF--------------------------------NI-SMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP  295 (710)
Q Consensus       249 ~~~~~~~L~~L--------------------------------~L-~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~  295 (710)
                      ....+++++.+                                ++ ..+.+.+..|. |..+++|+.|++++|.+. .+|
T Consensus       224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~  301 (606)
T 3vq2_A          224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE  301 (606)
T ss_dssp             HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred             HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence            22224444444                                44 55666666665 888899999999999887 777


Q ss_pred             hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168          296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS  375 (710)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~  375 (710)
                        .+..+++|++|++++|.+.            .+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+.
T Consensus       302 --~l~~~~~L~~L~l~~n~l~------------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          302 --DVPKHFKWQSLSIIRCQLK------------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             --CCCTTCCCSEEEEESCCCS------------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred             --hccccccCCEEEcccccCc------------ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence              4557888999988888774            355 44 8899999999999655333  6778999999999999988


Q ss_pred             ccC--CCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEE
Q 005168          376 GSL--PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLL  451 (710)
Q Consensus       376 ~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  451 (710)
                      +..  +..+. +++|++|++++|.+.              .+|..+..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAI--------------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEE--------------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCcchhhhhccCCcccEeECCCCccc--------------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            763  43343 789999988888766              345677889999999999999998777 678999999999


Q ss_pred             EccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCC
Q 005168          452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIP  530 (710)
Q Consensus       452 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~  530 (710)
                      ++++|.+.+..|..+..+                                           ++|+.|++++|.+++ ..|
T Consensus       430 ~l~~n~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~  466 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGL-------------------------------------------TSLNTLKMAGNSFKDNTLS  466 (606)
T ss_dssp             ECTTSCCEECCTTTTTTC-------------------------------------------TTCCEEECTTCEEGGGEEC
T ss_pred             ECcCCCCCccchhhhcCC-------------------------------------------CCCCEEECCCCcCCCcchH
Confidence            999999998888888664                                           489999999999997 478


Q ss_pred             ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccc-
Q 005168          531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA-  609 (710)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-  609 (710)
                      ..|..+++|++|+|++|.++++.|..|.++++|++|++++|++++..|..+..+++|+.|++++|+++ .+|.++..+. 
T Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~  545 (606)
T 3vq2_A          467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK  545 (606)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred             HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999 4666577776 


Q ss_pred             cCCcccccCCCCCCCCCC
Q 005168          610 TFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       610 ~~~~~~~~~n~~~c~~~~  627 (710)
                      .++.+++.+||+.|+|+.
T Consensus       546 ~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          546 SLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCCEEECCSCCCCCSSTT
T ss_pred             cCcEEEccCCCcccCCcc
Confidence            589999999999999775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-46  Score=421.00  Aligned_cols=491  Identities=19%  Similarity=0.164  Sum_probs=290.8

Q ss_pred             ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcc
Q 005168            3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGF   74 (710)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~   74 (710)
                      |.++..++.++. .+  .+++++|++++|.++ .++..+|.++++|++|+|++|+++        ++++|++|++++|.+
T Consensus        13 ~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           13 QCMELNFYKIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             ECCSSCCSSCCS-SS--CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EeCCCCccccCC-Cc--cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence            344444554333 22  235666666666665 344356666666666666666544        344555555555555


Q ss_pred             eeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccc
Q 005168           75 KGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITE  146 (710)
Q Consensus        75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  146 (710)
                      + .+++..|.++++|++|++++|+++++        ++|++|++++|.+++......+.++++|+.|++++|++....+.
T Consensus        89 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             C-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             C-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            5 44444777777777777777766543        45566666666555311123455666666666666665544333


Q ss_pred             cccCCCCCCcc----cEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc-----
Q 005168          147 SHSLTAPNFQL----QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL-----  217 (710)
Q Consensus       147 ~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----  217 (710)
                      .+..   ..++    .++++ .++.+.+..+..+... +|+.|++++|..........+..+++++.+.+....+     
T Consensus       168 ~~~~---l~~L~~~~~~L~l-~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          168 DLRV---LHQMPLLNLSLDL-SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             GGHH---HHTCTTCCCEEEC-TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             Hccc---hhccchhhhhccc-CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence            2211   1122    45555 4444444444433332 4556665555332211111224455554444322111     


Q ss_pred             -cccCccCccCCCC--CCEEEcccC-cCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc
Q 005168          218 -AGPFWLPIHSHKR--LGILDISNN-NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE  293 (710)
Q Consensus       218 -~~~~~~~~~~~~~--L~~L~ls~n-~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~  293 (710)
                       .......+..+.+  ++.++++++ .+.+.+|..+.. +++|++|++++|.+. .+|..+..+ +|++|++++|.+. .
T Consensus       243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~  318 (570)
T 2z63_A          243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q  318 (570)
T ss_dssp             CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred             hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c
Confidence             1111111222222  233444444 333333333322 455555555555554 244444444 5555555555554 4


Q ss_pred             CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc--chhhcCCCCCCEEECCC
Q 005168          294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI--PVEFCQLYSLQILDISD  371 (710)
Q Consensus       294 i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~  371 (710)
                      +|..   .+++|++|++++|.+..           ..+.  ..+++|++|++++|.+.+..  +..+.++++|++|++++
T Consensus       319 l~~~---~l~~L~~L~l~~n~~~~-----------~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  382 (570)
T 2z63_A          319 FPTL---KLKSLKRLTFTSNKGGN-----------AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF  382 (570)
T ss_dssp             CCBC---BCSSCCEEEEESCBSCC-----------BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred             cCcc---cccccCEEeCcCCcccc-----------cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence            4441   34455555555444332           1111  34455555555555554332  44455555555555555


Q ss_pred             CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCE
Q 005168          372 NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQL  450 (710)
Q Consensus       372 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  450 (710)
                      |.+.+.                                     |..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus       383 n~l~~~-------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          383 NGVITM-------------------------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             CSEEEE-------------------------------------EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             Cccccc-------------------------------------cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            544422                                     2225667888999999988886655 46788899999


Q ss_pred             EEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC-CCC
Q 005168          451 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI-GHI  529 (710)
Q Consensus       451 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~  529 (710)
                      |++++|.+.+..|..+..+                                           ++|+.|++++|.++ +..
T Consensus       426 L~l~~n~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGL-------------------------------------------SSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             EECTTSCCEECCTTTTTTC-------------------------------------------TTCCEEECTTCEEGGGEE
T ss_pred             EeCcCCcccccchhhhhcC-------------------------------------------CcCcEEECcCCcCccccc
Confidence            9999999888888777663                                           48999999999887 467


Q ss_pred             CccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168          530 PPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       530 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      |..|..+++|++|+|++|+++++.|..|..+++|++|++++|++++..|+.+..+++|+.|++++|++.|.||.
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            88899999999999999999999999999999999999999999988888899999999999999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-45  Score=418.27  Aligned_cols=545  Identities=19%  Similarity=0.165  Sum_probs=393.5

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI   80 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~   80 (710)
                      +||||+|+|+.+.+.+|.++++|++|+|++|+|+ .++.++|.++++|++|+|++|+++                 .+|+
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-----------------~l~~  117 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-----------------SLAL  117 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-----------------EECG
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-----------------CCCH
Confidence            3677777777777777777777777777777777 565567777777777777777765                 5665


Q ss_pred             HhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCC
Q 005168           81 REFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA  152 (710)
Q Consensus        81 ~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~  152 (710)
                      ..|.++++|++|++++|+++++        ++|++|++++|.++.......+..+++|+.|++++|++....+..+..+.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            5677777777777777765544        56777777777766432334567788888888888888776665543332


Q ss_pred             CCC-cccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc------ccccCccCc
Q 005168          153 PNF-QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS------LAGPFWLPI  225 (710)
Q Consensus       153 ~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~~~~~  225 (710)
                      ... ....+++ ..+.+.. ++........++.++++++......+...+..+..++...+..+.      +.......+
T Consensus       198 ~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  275 (635)
T 4g8a_A          198 QMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  275 (635)
T ss_dssp             TCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred             hhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence            222 3446666 5554443 333333445677788887766554444455677777766654322      222333445


Q ss_pred             cCCCCCCEEEcccCcCcc---cCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCC
Q 005168          226 HSHKRLGILDISNNNIRG---HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC  302 (710)
Q Consensus       226 ~~~~~L~~L~ls~n~i~~---~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  302 (710)
                      ..+..+...++..+....   .++. .+....+++.+.+.++.+....  .+.....|+.|++++|.+. .++..   .+
T Consensus       276 ~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l  348 (635)
T 4g8a_A          276 EGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KL  348 (635)
T ss_dssp             GGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BC
T ss_pred             ccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc---cc
Confidence            566666666665544331   1122 2334678999999988877543  3566788999999999887 55543   46


Q ss_pred             CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCCCCEEECCCCcCcccCCC
Q 005168          303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYSLQILDISDNNISGSLPS  380 (710)
Q Consensus       303 ~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~  380 (710)
                      +.|+.++++.|....             +.....+++|+.|++++|.+..  ..+..+..+.+|+.++++.+.+....+.
T Consensus       349 ~~L~~l~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  415 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGN-------------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN  415 (635)
T ss_dssp             TTCCEEEEESCCSCC-------------BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred             hhhhhcccccccCCC-------------Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence            788888888777543             2345578899999999998754  3566777889999999999998877776


Q ss_pred             CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc-
Q 005168          381 CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH-  459 (710)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-  459 (710)
                      ...+.+|+.+++..+.....            ..+..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. 
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~  483 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  483 (635)
T ss_dssp             CTTCTTCCEEECTTSEEEST------------TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccccccccchhhhhcccccc------------ccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            66688999998887765532            22355778899999999999999888999999999999999999854 


Q ss_pred             ccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCC
Q 005168          460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRI  539 (710)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  539 (710)
                      +..|..|..                                           +++|+.|+|++|++++..|..|.++++|
T Consensus       484 ~~~~~~~~~-------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          484 NFLPDIFTE-------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             GEECSCCTT-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCchhhhh-------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCC
Confidence            456777766                                           4489999999999999999999999999


Q ss_pred             CEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCCCccccccCCcccccC
Q 005168          540 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEG  618 (710)
Q Consensus       540 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~  618 (710)
                      ++|+|++|+|+++++..|.++++|++|+|++|+|++..|+.+..+ ++|+.|++++|||.|+|..  .++..|....   
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~--~~~~~wl~~~---  595 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH--QSFLQWIKDQ---  595 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG--HHHHHHHHHT---
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc--HHHHHHHHhC---
Confidence            999999999999999999999999999999999999999999988 6899999999999999962  3333221110   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168          619 NTFLCGLPLPICRSPATMSEASIGNER  645 (710)
Q Consensus       619 n~~~c~~~~~~c~~~~~~~~~~~~~~~  645 (710)
                      ....-+.....|..|...++.++..++
T Consensus       596 ~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          596 RQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             TTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             CCccCCCCCceeCCchHHCCCEeeeec
Confidence            001111111268889888888666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.1e-45  Score=408.26  Aligned_cols=476  Identities=17%  Similarity=0.121  Sum_probs=313.1

Q ss_pred             eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168            2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG   73 (710)
Q Consensus         2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~   73 (710)
                      .|++++.++.++...+   ++|++|++++|.+++ ++..+|.++++|++|++++|+++        ++++|++|++++|.
T Consensus        10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCSSCCSCCC---TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccccCC---CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            4678888987766432   789999999999984 44478999999999999988876        33444445555554


Q ss_pred             ceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168           74 FKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP  153 (710)
Q Consensus        74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~  153 (710)
                      ++ .+++..|.++++|++|++++|.+++.                .....+.++++|+.|++++|+.....+.  ..+..
T Consensus        86 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~  146 (549)
T 2z81_A           86 LS-SLSSSWFGPLSSLKYLNLMGNPYQTL----------------GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAG  146 (549)
T ss_dssp             CC-SCCHHHHTTCTTCCEEECTTCCCSSS----------------CSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred             cC-ccCHHHhccCCCCcEEECCCCccccc----------------chhhhhhccCCccEEECCCCccccccCH--hhhhc
Confidence            44 23332455555555555555544421                1123467778888888888763322221  12344


Q ss_pred             CCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccC--c-cCccCCCC
Q 005168          154 NFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--W-LPIHSHKR  230 (710)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~  230 (710)
                      .++|++|++ .++.+.+..|..+..+++|++|+++.|.+. .+|..++..+++|+.|++++|++.+..  + .....+++
T Consensus       147 l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          147 LTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             CCEEEEEEE-EETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             ccccCeeec-cCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence            557888888 667777777777778888888888877764 455555566788888888888877642  1 22345677


Q ss_pred             CCEEEcccCcCcccCChhhh---hcCCCccEEEccCCcCcccC------CccCcCCCCCCEEeccCCccCCcCC-----h
Q 005168          231 LGILDISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDGSI------PSSFGNMKFLQLLDLSNNQLTGEIP-----E  296 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~------~~~f~~l~~L~~L~Ls~n~l~~~i~-----~  296 (710)
                      |+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+..      ...+..+++|+.|+++++.+. ...     .
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~l~  303 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLS  303 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGGGSCCCC
T ss_pred             ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc-hhhhcccch
Confidence            88888888877654443332   22567777777777665431      123345566666666666544 111     0


Q ss_pred             hhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-cCCCccceeeCccCccccccch---hhcCCCCCCEEECCCC
Q 005168          297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-GNLTWLIHIIMPENHLEGPIPV---EFCQLYSLQILDISDN  372 (710)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n  372 (710)
                      .++...++|++|++++|.+..            +|..+ ..+++|++|++++|.+.+..|.   .+..+++|++|++++|
T Consensus       304 ~~~~~~~~L~~L~l~~n~l~~------------ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          304 TVYSLLEKVKRITVENSKVFL------------VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             HHHHHSTTCCEEEEESSCCCC------------CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             hhhhhcccceEEEeccCcccc------------CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence            111123344444444444331            23222 3444555555555544443321   2334444444444444


Q ss_pred             cCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEE
Q 005168          373 NISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD  452 (710)
Q Consensus       373 ~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (710)
                      ++++..                                  ..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       372 ~l~~~~----------------------------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          372 HLRSMQ----------------------------------KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             CCCCHH----------------------------------HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred             cccccc----------------------------------cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence            443210                                  01134677899999999999998 5677888999999999


Q ss_pred             ccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCcc
Q 005168          453 LSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ  532 (710)
Q Consensus       453 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  532 (710)
                      +++|.+++. |..+                                             ++.|+.|++++|++++..   
T Consensus       417 Ls~N~l~~l-~~~~---------------------------------------------~~~L~~L~Ls~N~l~~~~---  447 (549)
T 2z81_A          417 LSSTGIRVV-KTCI---------------------------------------------PQTLEVLDVSNNNLDSFS---  447 (549)
T ss_dssp             CTTSCCSCC-CTTS---------------------------------------------CTTCSEEECCSSCCSCCC---
T ss_pred             CCCCCcccc-cchh---------------------------------------------cCCceEEECCCCChhhhc---
Confidence            999998743 3222                                             247999999999998653   


Q ss_pred             ccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168          533 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       533 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                       ..+++|++|+|++|+++.+++  ...+++|++|+|++|++++..|+.+..+++|+.|++++|++.|.||
T Consensus       448 -~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 -LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             578999999999999997654  4678999999999999999999899999999999999999999997

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.1e-45  Score=407.93  Aligned_cols=503  Identities=19%  Similarity=0.173  Sum_probs=358.5

Q ss_pred             CCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEc
Q 005168           23 LRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDM   94 (710)
Q Consensus        23 L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~L   94 (710)
                      .+..+-++..++ .+| ..+  -+++++|++++|.++        ++++|++|++++|.++ .+++.+|.++++|++|++
T Consensus         9 ~~~~~c~~~~l~-~ip-~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFY-KIP-DNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCS-SCC-SSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCcc-ccC-CCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence            456777777777 677 333  257999999999876        3445555555555554 233324555555555555


Q ss_pred             cCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-ccC
Q 005168           95 SYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TFP  173 (710)
Q Consensus        95 s~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~  173 (710)
                      ++|++++                 ++...+.++++|++|++++|++.......   +....+|++|++ +++.+.+ .+|
T Consensus        84 ~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~~L~~L~L-~~n~l~~~~lp  142 (570)
T 2z63_A           84 TGNPIQS-----------------LALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNV-AHNLIQSFKLP  142 (570)
T ss_dssp             TTCCCCE-----------------ECTTTTTTCTTCCEEECTTSCCCCSTTCS---CTTCTTCCEEEC-CSSCCCCCCCC
T ss_pred             cCCcCCc-----------------cCHhhhcCccccccccccccccccCCCcc---ccccccccEEec-CCCccceecCh
Confidence            5554432                 33345677777777777777766544322   344557777777 5555554 467


Q ss_pred             hhccCCCCCCEEEccCCcCcccCChhHhhcCCCC----cEEEccCCcccccCccCccCCCCCCEEEcccCcCccc-CChh
Q 005168          174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL----ATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGH-IPVE  248 (710)
Q Consensus       174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~~~~  248 (710)
                      ..+..+++|++|++++|.+++..+..+ ..+++|    +.|++++|.+.+..+..+... +|+.|++++|..... ++..
T Consensus       143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~  220 (570)
T 2z63_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC  220 (570)
T ss_dssp             GGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHH
T ss_pred             hhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhh
Confidence            777778888888888887776555544 566666    778888888877777666655 688888877743321 2222


Q ss_pred             hhhcCCCccEEEccCCc------CcccCCccCcCCCC--CCEEeccCC-ccCCcCChhhhcCCCCCcEEEccCCCCcCee
Q 005168          249 IGDVLPSLYVFNISMNA------LDGSIPSSFGNMKF--LQLLDLSNN-QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGL  319 (710)
Q Consensus       249 ~~~~~~~L~~L~L~~n~------i~~~~~~~f~~l~~--L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l  319 (710)
                       ...+++++.+.+....      +.......|.++++  ++.++++++ .+.+.+| ..+..+++|++|++++|.+.+  
T Consensus       221 -~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~--  296 (570)
T 2z63_A          221 -IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER--  296 (570)
T ss_dssp             -HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS--
T ss_pred             -hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh--
Confidence             2235555555443221      22222333444433  345566665 4553333 344467788888877776653  


Q ss_pred             eccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccc
Q 005168          320 YLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR  399 (710)
Q Consensus       320 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~  399 (710)
                                +|..+..+ +|++|++++|.+... |.  ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++
T Consensus       297 ----------l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~  361 (570)
T 2z63_A          297 ----------VKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSF  361 (570)
T ss_dssp             ----------CCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBE
T ss_pred             ----------hhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCc
Confidence                      56666677 888888888887733 32  4677888888888887765554 447788888777776653


Q ss_pred             cccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC-CCcccccccccccCC
Q 005168          400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNS  478 (710)
Q Consensus       400 ~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~  478 (710)
                      ..           ..|..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+..          
T Consensus       362 ~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------  419 (570)
T 2z63_A          362 KG-----------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS----------  419 (570)
T ss_dssp             EE-----------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT----------
T ss_pred             cc-----------cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc----------
Confidence            21           2367788899999999999999866555 8999999999999999987665 34544          


Q ss_pred             CCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC-CCCchhh
Q 005168          479 SSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT-GLIPSTF  557 (710)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~  557 (710)
                                                       +++|+.|++++|.+.+..|..|.++++|++|++++|.++ +..|..|
T Consensus       420 ---------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~  466 (570)
T 2z63_A          420 ---------------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  466 (570)
T ss_dssp             ---------------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ---------------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence                                             458999999999999999999999999999999999998 5678899


Q ss_pred             cCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          558 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       558 ~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      ..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..++.++.+++.+|++.|+||.
T Consensus       467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999998899999999999999999999998888888899999999999999999764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-45  Score=403.97  Aligned_cols=457  Identities=20%  Similarity=0.171  Sum_probs=349.1

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI   80 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~   80 (710)
                      +||+++|.++.++.. +.  ++|++|++++|.++ .++.++|.++++|++|+|++|+++                 .+++
T Consensus         4 ~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~   62 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKD-LS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-----------------YLDI   62 (520)
T ss_dssp             EEECTTSCCSSCCCS-CC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCC-----------------EEEG
T ss_pred             eEecCCCCccccccc-cc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccC-----------------CcCh
Confidence            489999999976544 43  89999999999998 566688999999999999988876                 5544


Q ss_pred             HhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEE
Q 005168           81 REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSL  160 (710)
Q Consensus        81 ~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L  160 (710)
                      ..|.++++|++|++++|+++.+                 +..   .+++|++|++++|++..                  
T Consensus        63 ~~~~~l~~L~~L~Ls~N~l~~l-----------------p~~---~l~~L~~L~L~~N~l~~------------------  104 (520)
T 2z7x_B           63 SVFKFNQELEYLDLSHNKLVKI-----------------SCH---PTVNLKHLDLSFNAFDA------------------  104 (520)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEE-----------------ECC---CCCCCSEEECCSSCCSS------------------
T ss_pred             HHhhcccCCCEEecCCCceeec-----------------Ccc---ccCCccEEeccCCcccc------------------
Confidence            4899999999999999887743                 111   46677777776665532                  


Q ss_pred             EecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCC--cEEEccCCcc--cccCccCccCCC-CCCEEE
Q 005168          161 SLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL--ATLFLVNDSL--AGPFWLPIHSHK-RLGILD  235 (710)
Q Consensus       161 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~  235 (710)
                               ..+|..+..+++|++|++++|.+++.   . +..+++|  ++|++++|.+  .+..|..+..+. ....++
T Consensus       105 ---------~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B          105 ---------LPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ---------CCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             ---------ccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence                     13456677778888888888877652   2 2566777  8888888888  666666666555 233567


Q ss_pred             cccCcCcccCChhhhhcCCCccEEEccCCc-------CcccCCccCcCCCCCCEEeccCCccCCcCChhhhc--CCCCCc
Q 005168          236 ISNNNIRGHIPVEIGDVLPSLYVFNISMNA-------LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV--GCVNLQ  306 (710)
Q Consensus       236 ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~  306 (710)
                      +++|.+.+.++...+..+++|+.|++++|.       +.+..+ .|..+++|+.|++++|.+++..+.....  ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            888888777777666668889999999886       555555 6888899999999988876433322221  246888


Q ss_pred             EEEccCCCCcCeeeccCccCccCcCccc-----cCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccC
Q 005168          307 FLMLSNNSLKEGLYLTNNSLSGNIPGWL-----GNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSL  378 (710)
Q Consensus       307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~  378 (710)
                      +|++++|.+..           .+|..+     ..++.|+.+++++|.+ ......+..+   .+|+.|++++|.+....
T Consensus       251 ~L~l~~n~l~~-----------~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~  318 (520)
T 2z7x_B          251 YFSISNVKLQG-----------QLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML  318 (520)
T ss_dssp             EEEEEEEEEES-----------CCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred             EEEeecccccC-----------ccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc
Confidence            88877776553           566666     8899999999999988 3332455544   67999999999887543


Q ss_pred             CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc--cCCcccCCCCCCCEEEccCC
Q 005168          379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG--EVPVQLCELNQLQLLDLSNN  456 (710)
Q Consensus       379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n  456 (710)
                      . ...+++|++|++++|.+++             ..|.++..+++|++|++++|++++  ..|..+..+++|++|++++|
T Consensus       319 ~-~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          319 C-PSKISPFLHLDFSNNLLTD-------------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             C-CSSCCCCCEEECCSSCCCT-------------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             c-hhhCCcccEEEeECCccCh-------------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            1 1247889999777766553             567788889999999999999986  44577999999999999999


Q ss_pred             cccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc
Q 005168          457 SLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN  535 (710)
Q Consensus       457 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  535 (710)
                      .+.+.+|. .+..                                           +++|+.|++++|.+++..|..+. 
T Consensus       385 ~l~~~l~~~~~~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~-  420 (520)
T 2z7x_B          385 SVSYDEKKGDCSW-------------------------------------------TKSLLSLNMSSNILTDTIFRCLP-  420 (520)
T ss_dssp             CCBCCGGGCSCCC-------------------------------------------CTTCCEEECCSSCCCGGGGGSCC-
T ss_pred             cCCcccccchhcc-------------------------------------------CccCCEEECcCCCCCcchhhhhc-
Confidence            99874443 3444                                           45899999999999877776654 


Q ss_pred             cCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168          536 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       536 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                       ++|+.|+|++|+++.++ ..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.|+
T Consensus       421 -~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          421 -PRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             -TTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCCEEECCCCcccccc-hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence             79999999999999654 445599999999999999995444458999999999999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.8e-44  Score=399.59  Aligned_cols=496  Identities=18%  Similarity=0.186  Sum_probs=367.1

Q ss_pred             CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcC
Q 005168           20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI   99 (710)
Q Consensus        20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l   99 (710)
                      |+...+.+.+++.++ .+|. .+.  ++|++|++++|.++                 .+++..|.++++|++|++++|++
T Consensus         4 C~~~~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~i   62 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKIT-----------------YIGHGDLRACANLQVLILKSSRI   62 (549)
T ss_dssp             ECTTSEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCC-----------------EECSSTTSSCTTCCEEECTTSCC
T ss_pred             CCCCceEECCCCccc-cccc-cCC--CCccEEECcCCccC-----------------ccChhhhhcCCcccEEECCCCCc
Confidence            555666788889888 7883 332  78899999988776                 33333666677777777766665


Q ss_pred             CCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-ccChhccC
Q 005168          100 DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TFPKFLYH  178 (710)
Q Consensus       100 ~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~  178 (710)
                      ++.                 +...+.++++|++|++++|++....+..   +...++|++|++ +++.+.+ ..|..+..
T Consensus        63 ~~~-----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-s~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           63 NTI-----------------EGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLSSLKYLNL-MGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             CEE-----------------CTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCTTCCEEEC-TTCCCSSSCSSCSCTT
T ss_pred             Ccc-----------------ChhhccccccCCEEECCCCccCccCHHH---hccCCCCcEEEC-CCCcccccchhhhhhc
Confidence            532                 2233445555555555555554443322   223345556666 4444443 34566778


Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  258 (710)
                      +++|++|++++|...+.+|...+.++++|++|++++|++.+..|..+..+++|++|++++|.+. .+|..++..+++|++
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~  200 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY  200 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence            8899999999988555666544578999999999999999988999999999999999999987 777777766899999


Q ss_pred             EEccCCcCcccC---CccCcCCCCCCEEeccCCccCCcCChhh---hcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168          259 FNISMNALDGSI---PSSFGNMKFLQLLDLSNNQLTGEIPEHL---AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG  332 (710)
Q Consensus       259 L~L~~n~i~~~~---~~~f~~l~~L~~L~Ls~n~l~~~i~~~~---~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~  332 (710)
                      |++++|.+.+..   ......+++|+.|++++|.+.+..+..+   +..+++|+.+++++|.+...-++     ......
T Consensus       201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-----~~~~~~  275 (549)
T 2z81_A          201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-----NPSESD  275 (549)
T ss_dssp             EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-----CCCTTT
T ss_pred             EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-----cccchh
Confidence            999999988642   2234567899999999998875444333   24578899999988876542111     111223


Q ss_pred             cccCCCccceeeCccCccccc-----cchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCC
Q 005168          333 WLGNLTWLIHIIMPENHLEGP-----IPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLS  406 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~  406 (710)
                      .+..+++|+.|.+.++.+...     .+..+...++|++|++++|.+..++...+. +++|++|++++|.+.+..+.   
T Consensus       276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~---  352 (549)
T 2z81_A          276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK---  352 (549)
T ss_dssp             CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH---
T ss_pred             hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc---
Confidence            456788899999988876532     223345567899999999998866555543 88999998888877653210   


Q ss_pred             CccCcccCChhhhcCCCccEEecCCCcccccCC--cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccc
Q 005168          407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK  484 (710)
Q Consensus       407 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (710)
                             .+..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..                
T Consensus       353 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------  408 (549)
T 2z81_A          353 -------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW----------------  408 (549)
T ss_dssp             -------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC----------------
T ss_pred             -------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc----------------
Confidence                   02235678999999999999986543  45889999999999999998 45665544                


Q ss_pred             cccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCC
Q 005168          485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIE  564 (710)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  564 (710)
                                                 +++|+.|++++|.+++. |..+  .++|++|+|++|+++++.    ..+++|+
T Consensus       409 ---------------------------~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          409 ---------------------------PEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             ---------------------------CTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             ---------------------------cccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhc
Confidence                                       44899999999999854 3333  268999999999999764    5789999


Q ss_pred             EEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          565 SLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       565 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +|++++|+++ .+|+ ...+++|++|++++|++++..+.++..+..++.+++.+|++.|+||
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999 5665 4679999999999999999888888999999999999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.9e-45  Score=410.07  Aligned_cols=474  Identities=19%  Similarity=0.203  Sum_probs=345.7

Q ss_pred             cccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCC------------------CCCcEEEccccccccccCcccc
Q 005168           63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL------------------VVPQELRLSDNHFRIPISLEPL  124 (710)
Q Consensus        63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------------------~~L~~L~L~~~~l~~~~~~~~l  124 (710)
                      +.+.|+|+++.+.|.+|+ +++++++|++|+|++|.+...                  ..++ ++++.+.+.+..+...-
T Consensus        82 ~V~~L~L~~~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CEEEEECTTSCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSC
T ss_pred             CEEEEEecCcccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHH
Confidence            456777778888899998 999999999999999976211                  1122 33333333322221111


Q ss_pred             cCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecC-CCCCCCccChhccCCCCCCEEEccCCcCccc--------
Q 005168          125 FNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS-SYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE--------  195 (710)
Q Consensus       125 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~--------  195 (710)
                      ..+..+..+++....+..         .....++.+.+.. ++.+++ +|..++++++|++|++++|.+++.        
T Consensus       160 ~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  229 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN  229 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             HHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence            011111112222111110         0111223333311 345555 888999999999999999999885        


Q ss_pred             ---------CChhHhh--cCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCc-Ccc-cCChhhhhc-----CCCcc
Q 005168          196 ---------FPNWLLE--NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN-IRG-HIPVEIGDV-----LPSLY  257 (710)
Q Consensus       196 ---------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~~-~~~~~~~~~-----~~~L~  257 (710)
                               +|..+ .  ++++|++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|..++..     +++|+
T Consensus       230 ~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          230 ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             TTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred             cccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence                     77776 5  89999999999999999999999999999999999998 887 788887652     38999


Q ss_pred             EEEccCCcCcccCCc--cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          258 VFNISMNALDGSIPS--SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       258 ~L~L~~n~i~~~~~~--~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      +|++++|.++ .+|.  .|.++++|++|++++|.++|.+|  .+..+++|++|++++|.+.            .+|..+.
T Consensus       309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~------------~lp~~l~  373 (636)
T 4eco_A          309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT------------EIPANFC  373 (636)
T ss_dssp             EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE------------ECCTTSE
T ss_pred             EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc------------cccHhhh
Confidence            9999999998 6777  89999999999999999988888  5667889999998888776            3677788


Q ss_pred             CCCc-cceeeCccCccccccchhhcCCC--CCCEEECCCCcCcccCCCCCC--------CCCcceEEccCcccccccccc
Q 005168          336 NLTW-LIHIIMPENHLEGPIPVEFCQLY--SLQILDISDNNISGSLPSCFH--------PLSIEQVHLSKNMLHRQLKRD  404 (710)
Q Consensus       336 ~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~i~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~  404 (710)
                      .+++ |++|++++|.++ .+|..+....  +|++|++++|.+.+..|..+.        +.+|+.|++++|.++.     
T Consensus       374 ~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----  447 (636)
T 4eco_A          374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-----  447 (636)
T ss_dssp             EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----
T ss_pred             hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-----
Confidence            8998 999999999988 5677777654  899999999999887665443        4578888777776552     


Q ss_pred             CCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCC-------CCCEEEccCCcccccCCCCcc--cccccccc
Q 005168          405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN-------QLQLLDLSNNSLHGSIPPCFD--NTTLYESY  475 (710)
Q Consensus       405 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~  475 (710)
                              ..+..+..+++|++|++++|+++...+..+....       +|+.|++++|.++ .+|..+.  .       
T Consensus       448 --------lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-------  511 (636)
T 4eco_A          448 --------FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT-------  511 (636)
T ss_dssp             --------CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT-------
T ss_pred             --------CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc-------
Confidence                    3344566688999999999999854444444333       8999999999988 5555543  3       


Q ss_pred             cCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeC------CCccC
Q 005168          476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNL------SYNNL  549 (710)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~n~l  549 (710)
                                                          +++|+.|+|++|++++ +|..+..+++|++|+|      ++|++
T Consensus       512 ------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          512 ------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             ------------------------------------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence                                                4589999999999997 7888889999999999      56778


Q ss_pred             CCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcccc--ccCCcccccCCCCCCCCC
Q 005168          550 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQF--ATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       550 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~~~n~~~c~~~  626 (710)
                      .+..|..+..+++|++|+|++|++. .+|..+.  ++|+.|++++|++.+.-...+...  .....+.+.....+++||
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             cccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            8888999999999999999999994 6777655  789999999999887544332221  122233344445555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3e-41  Score=384.11  Aligned_cols=505  Identities=21%  Similarity=0.211  Sum_probs=330.2

Q ss_pred             ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHh
Q 005168            3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIRE   82 (710)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~   82 (710)
                      |-++-.++.++. .+.  +.+++|||++|.|+ .++..+|.++++|++|+|++|+|+                 .+++.+
T Consensus        37 ~c~~~~l~~vP~-~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-----------------~i~~~~   95 (635)
T 4g8a_A           37 QCMELNFYKIPD-NLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-----------------TIEDGA   95 (635)
T ss_dssp             ECTTSCCSSCCS-SSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-----------------EECTTT
T ss_pred             ECCCCCcCccCC-CCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-----------------CcChhH
Confidence            344555665543 232  37999999999998 677789999999999999999887                 787778


Q ss_pred             hcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEe
Q 005168           83 FDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSL  162 (710)
Q Consensus        83 ~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l  162 (710)
                      |.++++|++|+|++|+++++                 +...|.++++|++|++++|++.......   +...++|++|++
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l-----------------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~L  155 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSL-----------------ALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNV  155 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEE-----------------CGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEEC
T ss_pred             hcCCCCCCEEEccCCcCCCC-----------------CHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeecc
Confidence            99999999999999987643                 2233455555555555555554433222   223345555555


Q ss_pred             cCCCCCCC-ccChhccCCCCCCEEEccCCcCcccCChhHhhcCCC----CcEEEccCCcccccCccCccCCCCCCEEEcc
Q 005168          163 SSSYGDGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPIHSHKRLGILDIS  237 (710)
Q Consensus       163 ~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  237 (710)
                       +++.+.. ..|..+..+++|++|++++|.+++..+..+ ..+.+    ...++++.|.+....+..+. ...++.+++.
T Consensus       156 -s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~  232 (635)
T 4g8a_A          156 -AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLR  232 (635)
T ss_dssp             -CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEE
T ss_pred             -ccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhh
Confidence             3333322 344555556666666666666655444433 22222    23455566655544433332 2234455555


Q ss_pred             cCcCcccCChhhhhcCCCccEEEcc------------------------------CCcCc---ccCCccCcCCCCCCEEe
Q 005168          238 NNNIRGHIPVEIGDVLPSLYVFNIS------------------------------MNALD---GSIPSSFGNMKFLQLLD  284 (710)
Q Consensus       238 ~n~i~~~~~~~~~~~~~~L~~L~L~------------------------------~n~i~---~~~~~~f~~l~~L~~L~  284 (710)
                      +|.....++...+..++.++...+.                              .+...   ...+..+..+.+++.++
T Consensus       233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~  312 (635)
T 4g8a_A          233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS  312 (635)
T ss_dssp             SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred             cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence            5543322233333334444433332                              22111   11122334445555555


Q ss_pred             ccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCC
Q 005168          285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSL  364 (710)
Q Consensus       285 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  364 (710)
                      +.++.+. .++..  ....+|+.|++++|.+..           ..+   ..++.|+.+++..|.+...  ..+..+++|
T Consensus       313 ~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~-----------~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L  373 (635)
T 4g8a_A          313 LVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQ-----------FPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSL  373 (635)
T ss_dssp             EESCEEE-ECGGG--GSCCCCSEEEEESCEESS-----------CCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTC
T ss_pred             ccccccc-ccccc--ccchhhhhhhcccccccC-----------cCc---ccchhhhhcccccccCCCC--ccccccccc
Confidence            5555554 33322  234455555555554432           222   2345666667766665532  233456777


Q ss_pred             CEEECCCCcCcccCCC---CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC-Cc
Q 005168          365 QILDISDNNISGSLPS---CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV-PV  440 (710)
Q Consensus       365 ~~L~ls~n~i~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~  440 (710)
                      +.+++++|.+......   .+...+++.+++..+...              ..+..+..+++|+.++++++...... +.
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~--------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  439 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFS  439 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE--------------EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhccccccc--------------cccccccccccccchhhhhcccccccccc
Confidence            7777777776543221   112556777766665543              23445667888899998888776444 34


Q ss_pred             ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEEC
Q 005168          441 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL  520 (710)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  520 (710)
                      .|..+++++.+++++|.+.+..+..+..                                           ++.++.|++
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------------~~~L~~L~L  476 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------------LSSLEVLKM  476 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------------------CTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccc-------------------------------------------chhhhhhhh
Confidence            5788888999999999888777777655                                           448999999


Q ss_pred             cCCcC-CCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168          521 SCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       521 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~  599 (710)
                      ++|.+ .+..|..|..+++|++|+|++|++++++|.+|.++++|++|+|++|+|++..|..|..+++|++|++++|++++
T Consensus       477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            99975 44578889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccc-ccCCcccccCCCCCCCCCC
Q 005168          600 EILEWTAQF-ATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       600 ~~~~~~~~~-~~~~~~~~~~n~~~c~~~~  627 (710)
                      ..|.++..+ ..++.+++.+|||.|+|..
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999888777 5788999999999999763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-42  Score=395.23  Aligned_cols=442  Identities=18%  Similarity=0.169  Sum_probs=323.4

Q ss_pred             CCCcEEEccccccccccCcccccCCCCCcEEEc-cCCcccccccccccC-------------------------------
Q 005168          103 VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHA-KNNQMNAEITESHSL-------------------------------  150 (710)
Q Consensus       103 ~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L-~~n~~~~~~~~~~~~-------------------------------  150 (710)
                      ..++.|+|+++.+.|.++ ..+.+++.|+.|+| ++|.+....+.....                               
T Consensus       323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            467788888888888777 56888999999999 777654431110000                               


Q ss_pred             -----------------CCCCCcccEEEecC-CCCCCCccChhccCCCCCCEEEccCCcCcc-----------------c
Q 005168          151 -----------------TAPNFQLQSLSLSS-SYGDGVTFPKFLYHQHDLEYVRLSHIKMNG-----------------E  195 (710)
Q Consensus       151 -----------------~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----------------~  195 (710)
                                       ......++.+.+.. .+.+.+ +|..+..+++|+.|++++|.+++                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                             00111222222211 133344 78888888899999999888887                 3


Q ss_pred             CChhH-hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCc-Ccc-cCChhhhh------cCCCccEEEccCCcC
Q 005168          196 FPNWL-LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN-IRG-HIPVEIGD------VLPSLYVFNISMNAL  266 (710)
Q Consensus       196 ~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~~-~~~~~~~~------~~~~L~~L~L~~n~i  266 (710)
                      +|..+ |.++++|+.|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++.      .+++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            77765 3488888999998888888888888888889999998887 886 67776654      234888888888888


Q ss_pred             cccCCc--cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc-ccee
Q 005168          267 DGSIPS--SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW-LIHI  343 (710)
Q Consensus       267 ~~~~~~--~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~-L~~L  343 (710)
                      . .+|.  .|.++++|+.|++++|.++ .+|  .+..+++|++|++++|.+.            .+|..+..+++ |++|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE------------EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS------------CCCTTSCEECTTCCEE
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc------------cchHHHhhccccCCEE
Confidence            8 6676  7888888888888888888 888  5667888888888877765            36677888888 8889


Q ss_pred             eCccCccccccchhhcCCCC--CCEEECCCCcCcccCCCCC------CCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          344 IMPENHLEGPIPVEFCQLYS--LQILDISDNNISGSLPSCF------HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       344 ~L~~n~l~~~~~~~~~~l~~--L~~L~ls~n~i~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      ++++|.+. .+|..+..++.  |+.|++++|.+.+..+...      ...+|+.|++++|.+.              .+|
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--------------~lp  689 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--------------KFP  689 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--------------SCC
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--------------ccC
Confidence            99888888 56677766654  8889999888877654332      2457888877776655              344


Q ss_pred             hh-hhcCCCccEEecCCCcccccCCcccCCC-------CCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccc
Q 005168          416 DW-IGELSQLSHLILGHNNLEGEVPVQLCEL-------NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEI  487 (710)
Q Consensus       416 ~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (710)
                      .. +..+++|+.|+|++|+++...+..+...       ++|+.|+|++|+++ .+|..+..                   
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------------  749 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------------  749 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------------
T ss_pred             HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------------
Confidence            44 4578899999999999884444334332       38999999999888 55555430                   


Q ss_pred             ceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC------ccCCCCCchhhcCCc
Q 005168          488 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY------NNLTGLIPSTFSNLK  561 (710)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~  561 (710)
                                            ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |.+.+..|..|.+++
T Consensus       750 ----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          750 ----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             ----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             ----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence                                  014589999999999997 688888999999999976      788888899999999


Q ss_pred             cCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCC
Q 005168          562 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLC  623 (710)
Q Consensus       562 ~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c  623 (710)
                      +|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+..........+..|+..+
T Consensus       807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            999999999999 47777655  689999999999887655544444444444455555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=384.28  Aligned_cols=438  Identities=21%  Similarity=0.246  Sum_probs=321.9

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI   80 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~   80 (710)
                      +|||++|.|+++.+.+|.++++|++|++++|++++ +.+++|.++++|++|+|++|+++                 .+|.
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-----------------~lp~   86 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-----------------KISC   86 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-----------------EEEC
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-----------------ecCc
Confidence            48999999999999999999999999999999994 54489999999999999999887                 4444


Q ss_pred             HhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcc--c
Q 005168           81 REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQL--Q  158 (710)
Q Consensus        81 ~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L--~  158 (710)
                       .  .+++|++|++++|++++.               .++ ..+.++++|+.|++++|++.....      ....+|  +
T Consensus        87 -~--~l~~L~~L~L~~N~l~~~---------------~~p-~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~L~L~  141 (520)
T 2z7x_B           87 -H--PTVNLKHLDLSFNAFDAL---------------PIC-KEFGNMSQLKFLGLSTTHLEKSSV------LPIAHLNIS  141 (520)
T ss_dssp             -C--CCCCCSEEECCSSCCSSC---------------CCC-GGGGGCTTCCEEEEEESSCCGGGG------GGGTTSCEE
T ss_pred             -c--ccCCccEEeccCCccccc---------------cch-hhhccCCcceEEEecCcccchhhc------cccccceee
Confidence             2  555666666666555432               011 234455555555555555443111      112233  5


Q ss_pred             EEEecCCCCC--CCccChhccCCC-CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc-------ccccCccCccCC
Q 005168          159 SLSLSSSYGD--GVTFPKFLYHQH-DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS-------LAGPFWLPIHSH  228 (710)
Q Consensus       159 ~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~  228 (710)
                      +|++ .++.+  .+..|..+..+. +...+++++|.+.+..+...+..+++|+.|++++|.       +.+..+ .+..+
T Consensus       142 ~L~l-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l  219 (520)
T 2z7x_B          142 KVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTN  219 (520)
T ss_dssp             EEEE-EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGC
T ss_pred             EEEe-ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccc
Confidence            5666 44444  444555554433 233556677777766666555677888888888776       555444 67788


Q ss_pred             CCCCEEEcccCcCcccCChhhhh--cCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcCChhhhcC
Q 005168          229 KRLGILDISNNNIRGHIPVEIGD--VLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEIPEHLAVG  301 (710)
Q Consensus       229 ~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i~~~~~~~  301 (710)
                      ++|+.|++++|.+++..+..+..  ..++|++|++++|.+.+.+|..+     .++++|+.+++++|.+  .+|...+..
T Consensus       220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~  297 (520)
T 2z7x_B          220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE  297 (520)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH
T ss_pred             cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc
Confidence            89999999988877543332221  14589999999999988888877     8889999999999988  566332222


Q ss_pred             C---CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccC
Q 005168          302 C---VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL  378 (710)
Q Consensus       302 l---~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~  378 (710)
                      +   .+|+.|++++|.+..           .  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++.++.
T Consensus       298 ~~~~~~L~~L~l~~n~l~~-----------~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  364 (520)
T 2z7x_B          298 IFSNMNIKNFTVSGTRMVH-----------M--LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS  364 (520)
T ss_dssp             HHHTCCCSEEEEESSCCCC-----------C--CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred             ccccCceeEEEcCCCcccc-----------c--cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence            3   578888888887653           1  11257788888888888888777888888888888888888776321


Q ss_pred             CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCc
Q 005168          379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNS  457 (710)
Q Consensus       379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  457 (710)
                                                        .+|..+..+++|++|++++|++++..| ..+..+++|+.|++++|.
T Consensus       365 ----------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          365 ----------------------------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             ----------------------------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             ----------------------------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence                                              334567788999999999999997444 458889999999999999


Q ss_pred             ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC
Q 005168          458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT  537 (710)
Q Consensus       458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  537 (710)
                      +++..|..+.                                             ++|+.|++++|+++ .+|..+..++
T Consensus       411 l~~~~~~~l~---------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~  444 (520)
T 2z7x_B          411 LTDTIFRCLP---------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE  444 (520)
T ss_dssp             CCGGGGGSCC---------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             CCcchhhhhc---------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence            9876665442                                             38999999999999 6677777999


Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                      +|++|+|++|+++++++..|..+++|++|++++|++.+..+
T Consensus       445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999999998877779999999999999999986544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-41  Score=379.46  Aligned_cols=367  Identities=19%  Similarity=0.127  Sum_probs=261.9

Q ss_pred             cccEEEecCCCCCCC-ccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCC--cEEEccCCcc--cccCccCccCCC-
Q 005168          156 QLQSLSLSSSYGDGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL--ATLFLVNDSL--AGPFWLPIHSHK-  229 (710)
Q Consensus       156 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~-  229 (710)
                      +|++|++ +++.+.+ .+|..+..+++|++|++++|.+.+...    ..+++|  ++|++++|.+  .+..+..+..+. 
T Consensus       122 ~L~~L~L-s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~  196 (562)
T 3a79_B          122 SLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNT  196 (562)
T ss_dssp             TCSEEEC-CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred             cCCEEEC-CCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEeecccccccccCcccccccCc
Confidence            4444444 3333333 345667777888888888887765322    344555  8888888887  666666666544 


Q ss_pred             -CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcC-----cccCCccCcCCCCCCEEeccCCccCCc----CChhhh
Q 005168          230 -RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNAL-----DGSIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLA  299 (710)
Q Consensus       230 -~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i-----~~~~~~~f~~l~~L~~L~Ls~n~l~~~----i~~~~~  299 (710)
                       .+ .+++++|.+.+.++...+..+++|+.+++++|..     .+ ....|.++++|+.|+++++.+.+.    ++... 
T Consensus       197 ~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-  273 (562)
T 3a79_B          197 TVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-  273 (562)
T ss_dssp             EEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred             ceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence             23 5577888877667766666677888888888752     21 223567778888888887766532    22222 


Q ss_pred             cCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-----cCCCccceeeCccCccccccchhhcC---CCCCCEEECCC
Q 005168          300 VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-----GNLTWLIHIIMPENHLEGPIPVEFCQ---LYSLQILDISD  371 (710)
Q Consensus       300 ~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~ls~  371 (710)
                       ..++|++|++++|.+.           +.+|..+     ..++.|+.+++..+.+ ......+..   ..+|++|++++
T Consensus       274 -~~~~L~~L~l~~n~l~-----------~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          274 -WPRPVEYLNIYNLTIT-----------ERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             -TTSSEEEEEEEEEEEC-----------SCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             -hcccccEEEEeccEee-----------ccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence             2457888877766654           3456555     6677777777777766 222233332   26799999999


Q ss_pred             CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC--CcccCCCCCCC
Q 005168          372 NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV--PVQLCELNQLQ  449 (710)
Q Consensus       372 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~  449 (710)
                      |.+..... ...+++|++|++++|.+++             ..|.++..+++|++|++++|++++..  |..+..+++|+
T Consensus       341 n~~~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          341 TPFIHMVC-PPSPSSFTFLNFTQNVFTD-------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             SCCCCCCC-CSSCCCCCEEECCSSCCCT-------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             CCcccccC-ccCCCCceEEECCCCcccc-------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            98864331 1237789999777666553             66778888999999999999998643  46689999999


Q ss_pred             EEEccCCcccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC
Q 005168          450 LLDLSNNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH  528 (710)
Q Consensus       450 ~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  528 (710)
                      +|++++|.+++.+|. .+..                                           +++|+.|++++|++++.
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~-------------------------------------------l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAW-------------------------------------------AESILVLNLSSNMLTGS  443 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCC-------------------------------------------CTTCCEEECCSSCCCGG
T ss_pred             EEECCCCcCCCccChhhhcC-------------------------------------------cccCCEEECCCCCCCcc
Confidence            999999999874443 4544                                           45899999999999876


Q ss_pred             CCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168          529 IPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       529 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      .|..+.  ++|++|+|++|+++.+++..+ .+++|++|++++|+++...+..+..+++|+.|++++|+|.|.|+.
T Consensus       444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          444 VFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            665544  799999999999997765555 999999999999999954444489999999999999999999873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.3e-41  Score=378.09  Aligned_cols=364  Identities=17%  Similarity=0.237  Sum_probs=277.9

Q ss_pred             CcCcccCChhHhhcCCCCcEEEccCCccccc-----------------CccCcc--CCCCCCEEEcccCcCcccCChhhh
Q 005168          190 IKMNGEFPNWLLENNTKLATLFLVNDSLAGP-----------------FWLPIH--SHKRLGILDISNNNIRGHIPVEIG  250 (710)
Q Consensus       190 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~ls~n~i~~~~~~~~~  250 (710)
                      |.+++ +|..+ .++++|++|++++|.+.+.                 +|..+.  .+++|++|++++|.+.+.+|..+.
T Consensus       193 n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            34555 66664 6778888888888887775                 677777  788888888888877777776666


Q ss_pred             hcCCCccEEEccCCc-Ccc-cCCccCcCC------CCCCEEeccCCccCCcCCh-hhhcCCCCCcEEEccCCCCcCeeec
Q 005168          251 DVLPSLYVFNISMNA-LDG-SIPSSFGNM------KFLQLLDLSNNQLTGEIPE-HLAVGCVNLQFLMLSNNSLKEGLYL  321 (710)
Q Consensus       251 ~~~~~L~~L~L~~n~-i~~-~~~~~f~~l------~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~l~l  321 (710)
                      . +++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|. ..+.++++|++|++++|.+.     
T Consensus       271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-----  343 (636)
T 4eco_A          271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-----  343 (636)
T ss_dssp             T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-----
T ss_pred             c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-----
Confidence            5 7788888888887 776 666666655      77888888888887 7776 34446778888777766654     


Q ss_pred             cCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC-CCEEECCCCcCcccCCCCCC---CCCcceEEccCccc
Q 005168          322 TNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILDISDNNISGSLPSCFH---PLSIEQVHLSKNML  397 (710)
Q Consensus       322 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~~~---~~~L~~L~l~~n~l  397 (710)
                            |.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+..+ |..+.   +++|+.|++++|.+
T Consensus       344 ------g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          344 ------GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             ------EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCT
T ss_pred             ------cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcC
Confidence                  2456 7788888888888888888 66777888888 88888888888844 33443   23688887766665


Q ss_pred             cccccccCCCccCcccCChhhh-------cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168          398 HRQLKRDLSYNLLNGSIPDWIG-------ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT  470 (710)
Q Consensus       398 ~~~~~~~l~~n~~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  470 (710)
                      .+             ..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|.++...+..+....
T Consensus       415 ~~-------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          415 GS-------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             TT-------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             CC-------------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence            54             5555555       677999999999999966666677899999999999999844434443211


Q ss_pred             ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCcccc--ccCCCCEEeCCCcc
Q 005168          471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIG--NLTRIQTLNLSYNN  548 (710)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~  548 (710)
                                                          ...+.+++|+.|+|++|.++ .+|..+.  .+++|++|+|++|+
T Consensus       482 ------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          482 ------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             ------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred             ------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence                                                00012348999999999999 5777776  99999999999999


Q ss_pred             CCCCCchhhcCCccCCEEeC------cCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCC
Q 005168          549 LTGLIPSTFSNLKHIESLDL------SYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL  622 (710)
Q Consensus       549 l~~~~~~~~~~l~~L~~L~L------s~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~  622 (710)
                      +++ .|..+..+++|++|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  +.++.+++.+|++.
T Consensus       525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            998 6788889999999999      56788889999999999999999999999 66777544  68889999999988


Q ss_pred             CCC
Q 005168          623 CGL  625 (710)
Q Consensus       623 c~~  625 (710)
                      |-.
T Consensus       601 ~~~  603 (636)
T 4eco_A          601 SID  603 (636)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-40  Score=381.74  Aligned_cols=450  Identities=18%  Similarity=0.208  Sum_probs=271.2

Q ss_pred             cccEEecCCCcceeecCHHhhcCCCCCCEEEc-cCCcCCCC---------------------------------------
Q 005168           63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDM-SYNKIDNL---------------------------------------  102 (710)
Q Consensus        63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~L-s~n~l~~~---------------------------------------  102 (710)
                      +...|+|+++.+.|.+|+ .++++++|++|+| ++|.+++.                                       
T Consensus       324 ~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             CEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            466778888888899998 9999999999999 77754332                                       


Q ss_pred             --------------------CCCcEEEcc--ccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEE
Q 005168          103 --------------------VVPQELRLS--DNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSL  160 (710)
Q Consensus       103 --------------------~~L~~L~L~--~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L  160 (710)
                                          ..++.+.+.  .|.+++ +| ..+.++++|+.|+|++|+++......  .+.+       
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~--~~~~-------  471 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAV--DWED-------  471 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSS--SCSC-------
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCcccc--cccc-------
Confidence                                111112222  144443 33 23556666666666666655410000  0000       


Q ss_pred             EecCCCCCCCccChhcc--CCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc-ccc-cCccCcc-------CCC
Q 005168          161 SLSSSYGDGVTFPKFLY--HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS-LAG-PFWLPIH-------SHK  229 (710)
Q Consensus       161 ~l~~~~~~~~~~~~~l~--~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~-------~~~  229 (710)
                       . ..+...+.+|..++  .+++|++|++++|.+.+.+|..+ .++++|+.|++++|+ +.+ .+|..+.       .++
T Consensus       472 -~-s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~  548 (876)
T 4ecn_A          472 -A-NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP  548 (876)
T ss_dssp             -T-TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT
T ss_pred             -c-ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccC
Confidence             0 00000012555544  55666666666666555555544 456666666666665 554 4443332       233


Q ss_pred             CCCEEEcccCcCcccCCh--hhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC-Cc
Q 005168          230 RLGILDISNNNIRGHIPV--EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN-LQ  306 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~-L~  306 (710)
                      +|++|++++|.++ .+|.  .+.. +++|+.|++++|.+. .+| .|.++++|+.|++++|.+. .+|..+. ++++ |+
T Consensus       549 ~L~~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~  622 (876)
T 4ecn_A          549 KIQIFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVE  622 (876)
T ss_dssp             TCCEEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCC
T ss_pred             CccEEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCC
Confidence            6666666666666 5655  3333 556666666666665 444 5666666666666666665 5555433 4555 66


Q ss_pred             EEEccCCCCcCeeeccCccCccCcCccccCCCc--cceeeCccCccccccchh---hc--CCCCCCEEECCCCcCcccCC
Q 005168          307 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW--LIHIIMPENHLEGPIPVE---FC--QLYSLQILDISDNNISGSLP  379 (710)
Q Consensus       307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~ls~n~i~~~~~  379 (710)
                      +|++++|.+..            +|..+..++.  |+.|++++|.+.+..|..   +.  .+++|+.|++++|.+..+++
T Consensus       623 ~L~Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~  690 (876)
T 4ecn_A          623 GLGFSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT  690 (876)
T ss_dssp             EEECCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred             EEECcCCCCCc------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence            66665555442            3444444432  666666666665543321   11  22356666666666664444


Q ss_pred             CCC-CCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC--CCCCCCEEEccCC
Q 005168          380 SCF-HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC--ELNQLQLLDLSNN  456 (710)
Q Consensus       380 ~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n  456 (710)
                      ..+ .+++|+.|++++|.+... +.    ..+. ..+..+.++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|
T Consensus       691 ~~~~~l~~L~~L~Ls~N~L~~i-p~----~~~~-~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          691 ELFATGSPISTIILSNNLMTSI-PE----NSLK-PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             HHHHTTCCCSEEECCSCCCSCC-CT----TSSS-CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred             HHHccCCCCCEEECCCCcCCcc-Ch----HHhc-cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC
Confidence            333 255666665555555411 10    0000 00011234458888888888888 5666665  8888889999888


Q ss_pred             cccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC------CcCCCCCC
Q 005168          457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC------NKLIGHIP  530 (710)
Q Consensus       457 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~  530 (710)
                      .+++ +|..+..                                           +++|+.|+|++      |.+.+.+|
T Consensus       764 ~L~~-lp~~l~~-------------------------------------------L~~L~~L~Ls~N~~ls~N~l~~~ip  799 (876)
T 4ecn_A          764 CFSS-FPTQPLN-------------------------------------------SSQLKAFGIRHQRDAEGNRILRQWP  799 (876)
T ss_dssp             CCSS-CCCGGGG-------------------------------------------CTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred             CCCc-cchhhhc-------------------------------------------CCCCCEEECCCCCCcccccccccCh
Confidence            8886 5666554                                           34888888865      78888999


Q ss_pred             ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168          531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~  599 (710)
                      ..|..+++|++|+|++|.+..+ |..+.  ++|+.|+|++|++....+..+.....+..+.+.+|++.+
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             HHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            9999999999999999999655 55454  699999999999998777777776667778888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-39  Score=354.88  Aligned_cols=374  Identities=19%  Similarity=0.159  Sum_probs=250.6

Q ss_pred             cccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEE
Q 005168          156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD  235 (710)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  235 (710)
                      ++++|++ +++.+.+..|..+..+++|++|++++|.+.+.++...+.++++|++|++++|++.+..|..+..+++|++|+
T Consensus        31 ~l~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           31 HVNYVDL-SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TCCEEEC-CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             ccCEEEe-cCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4555555 444444444555566666666666666665444443345666666666666666666666666666666666


Q ss_pred             cccCcCcccCChh-hhhcCCCccEEEccCCcCcccCCcc-CcCCCCCCEEeccCCccCCcCChhhhcCC--CCCcEEEcc
Q 005168          236 ISNNNIRGHIPVE-IGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLTGEIPEHLAVGC--VNLQFLMLS  311 (710)
Q Consensus       236 ls~n~i~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~-f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~Ls  311 (710)
                      +++|.+++.++.. .+..+++|++|++++|.+.+..|.. |.++++|++|++++|.+.+..+. .+..+  .+|+.|+++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccc
Confidence            6666665333222 2233566666666666666555544 56666666666666666532222 22222  455556555


Q ss_pred             CCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccCCCCCCCCCcc
Q 005168          312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSLPSCFHPLSIE  388 (710)
Q Consensus       312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~~~~~~~~~L~  388 (710)
                      +|.+...   ....+.......+..+++|++|++++|.+.+..+..+...   .+|+.|++++|...+..          
T Consensus       189 ~n~l~~~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------  255 (455)
T 3v47_A          189 SITLQDM---NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS----------  255 (455)
T ss_dssp             TCBCTTC---STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----------
T ss_pred             cCccccc---chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----------
Confidence            5554420   0000000000112344566666666666665555554433   55666666665544321          


Q ss_pred             eEEccCccccccccccCCCccCcccCChhhhc--CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168          389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE--LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF  466 (710)
Q Consensus       389 ~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  466 (710)
                                      +..+.+.+..+..+..  .++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..|
T Consensus       256 ----------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  319 (455)
T 3v47_A          256 ----------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF  319 (455)
T ss_dssp             ----------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ----------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence                            1122222223333333  3689999999999999999999999999999999999998888888


Q ss_pred             ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC
Q 005168          467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY  546 (710)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  546 (710)
                      ..+                                           ++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus       320 ~~l-------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          320 WGL-------------------------------------------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             TTC-------------------------------------------TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             cCc-------------------------------------------ccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            764                                           4899999999999988899999999999999999


Q ss_pred             ccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168          547 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       547 n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      |+++++.|..|.++++|++|++++|++++..++.+..+++|+.|++++|+++|.||.
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999999987777889999999999999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=364.72  Aligned_cols=457  Identities=18%  Similarity=0.185  Sum_probs=326.2

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI   80 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~   80 (710)
                      ++|+++|.++.++.. +.  ++|++|++++|.++ .++.++|.++++|++|+|++|+++                 .+++
T Consensus        35 ~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~   93 (562)
T 3a79_B           35 MVDYSNRNLTHVPKD-LP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-----------------SLDF   93 (562)
T ss_dssp             EEECTTSCCCSCCTT-SC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCC-----------------EECT
T ss_pred             EEEcCCCCCccCCCC-CC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCC-----------------cCCH
Confidence            489999999986654 42  89999999999999 566689999999999999999887                 4544


Q ss_pred             HhhcCCCCCCEEEccCCcCCCC-----CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 005168           81 REFDSFNNLEVLDMSYNKIDNL-----VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF  155 (710)
Q Consensus        81 ~~~~~l~~L~~L~Ls~n~l~~~-----~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~  155 (710)
                      .+|.++++|++|++++|+++.+     ++|++|++++|.+++......+.++++|+.|++++|++.....   ..+... 
T Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L-  169 (562)
T 3a79_B           94 HVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHL-  169 (562)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTS-
T ss_pred             HHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhc-
Confidence            4677777777777777776644     5677777777777642112567888999999999988765322   112222 


Q ss_pred             cccEEEecCCCCC--CCccChhccCCC-CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc----ccCccCccCC
Q 005168          156 QLQSLSLSSSYGD--GVTFPKFLYHQH-DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA----GPFWLPIHSH  228 (710)
Q Consensus       156 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~  228 (710)
                      +|++|++ .++.+  .+..|..+..+. ..-.+++++|.+.+..+...+..+++|+.+++++|+..    ......+..+
T Consensus       170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence            4588888 66666  666666665543 12255777887777666665567788888888877411    1112345667


Q ss_pred             CCCCEEEcccCcCcccCChhhh--hcCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcCChhhhcC
Q 005168          229 KRLGILDISNNNIRGHIPVEIG--DVLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEIPEHLAVG  301 (710)
Q Consensus       229 ~~L~~L~ls~n~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i~~~~~~~  301 (710)
                      +.|+.++++++.+.+.....+.  ...++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .+|...+..
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~  326 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS  326 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred             CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence            7788888777766532111111  113488888888888887777665     5556666666666665  455332211


Q ss_pred             ---CCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccC
Q 005168          302 ---CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL  378 (710)
Q Consensus       302 ---l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~  378 (710)
                         ..+|++|++++|.+..           .  .....+++|++|++++|.+++..|..+.++++|++|++++|++.++.
T Consensus       327 ~~~~~~L~~L~l~~n~~~~-----------~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  393 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPFIH-----------M--VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF  393 (562)
T ss_dssp             HHHTCCCSEEEEESSCCCC-----------C--CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred             hhccCcceEEEccCCCccc-----------c--cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence               2567888777776542           1  11256777777777777777777777777777777777777766321


Q ss_pred             CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-cCCcccCCCCCCCEEEccCCc
Q 005168          379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNS  457 (710)
Q Consensus       379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  457 (710)
                                                        ..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.
T Consensus       394 ----------------------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          394 ----------------------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             ----------------------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             ----------------------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence                                              223456778999999999999997 444568899999999999999


Q ss_pred             ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC
Q 005168          458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT  537 (710)
Q Consensus       458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  537 (710)
                      +++..|..+.                                             ++|+.|++++|+++ .+|..+.+++
T Consensus       440 l~~~~~~~l~---------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~  473 (562)
T 3a79_B          440 LTGSVFRCLP---------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQ  473 (562)
T ss_dssp             CCGGGGSSCC---------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSC
T ss_pred             CCcchhhhhc---------------------------------------------CcCCEEECCCCcCc-ccChhhcCCC
Confidence            9876665442                                             37999999999999 4565555999


Q ss_pred             CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                      +|++|+|++|+++++++..|..+++|+.|++++|++.+..+
T Consensus       474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999999999998877779999999999999999987554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-38  Score=344.28  Aligned_cols=371  Identities=20%  Similarity=0.234  Sum_probs=288.3

Q ss_pred             EEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccC
Q 005168          184 YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM  263 (710)
Q Consensus       184 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~  263 (710)
                      .++.+++.++ .+|. +   .++|++|++++|.+.+..+..|..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555544 3443 1   267777777777777777777778888888888888776566555555577888888888


Q ss_pred             CcCcccCCccCcCCCCCCEEeccCCccCCcCC-hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc-ccCCCccc
Q 005168          264 NALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP-EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW-LGNLTWLI  341 (710)
Q Consensus       264 n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~-~~~l~~L~  341 (710)
                      |.+.+..|.+|.++++|++|++++|.+++.++ ...+.++++|++|++++|.+..           ..|.. +.++++|+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~~l~~L~  157 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----------IQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----------CCCCGGGGGCTTCC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----------cCcccccCCCCccc
Confidence            88877777788888888888888888774333 2345567888888777776654           44544 77788888


Q ss_pred             eeeCccCccccccchhhcCC--CCCCEEECCCCcCcccCCCC---------CCCCCcceEEccCccccccccccCCCccC
Q 005168          342 HIIMPENHLEGPIPVEFCQL--YSLQILDISDNNISGSLPSC---------FHPLSIEQVHLSKNMLHRQLKRDLSYNLL  410 (710)
Q Consensus       342 ~L~L~~n~l~~~~~~~~~~l--~~L~~L~ls~n~i~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~l~~n~~  410 (710)
                      +|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+..         +..++|++|++++|.+.+           
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----------  226 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-----------  226 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----------
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----------
Confidence            88888888887777777665  67888888888887665443         234678888777766554           


Q ss_pred             cccCChhhhcC---CCccEEecCCCccccc----------CCcccC--CCCCCCEEEccCCcccccCCCCcccccccccc
Q 005168          411 NGSIPDWIGEL---SQLSHLILGHNNLEGE----------VPVQLC--ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESY  475 (710)
Q Consensus       411 ~~~~~~~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  475 (710)
                        ..|..+...   ++|+.|++++|...+.          .+..+.  ..++|+.|++++|.+.+..|..+..+      
T Consensus       227 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------  298 (455)
T 3v47_A          227 --SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF------  298 (455)
T ss_dssp             --HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC------
T ss_pred             --cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC------
Confidence              444444433   7889999988865432          122222  23689999999999999888888764      


Q ss_pred             cCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCch
Q 005168          476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS  555 (710)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  555 (710)
                                                           ++|+.|++++|.+++..|..|.++++|++|+|++|.++++.+.
T Consensus       299 -------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          299 -------------------------------------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             -------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             -------------------------------------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence                                                 4899999999999999999999999999999999999999999


Q ss_pred             hhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          556 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       556 ~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      .|.++++|++|+|++|++++..|..+..+++|++|++++|+++...+..+..++.++.+++.+|++.|+||
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999999999998889999999999999999999998777777888999999999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.8e-37  Score=332.42  Aligned_cols=403  Identities=23%  Similarity=0.302  Sum_probs=211.1

Q ss_pred             cCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCc
Q 005168           19 HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK   98 (710)
Q Consensus        19 ~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~   98 (710)
                      +..+|++|++++|.+. .+| .+|+++++|++|++++|.++                |.+|. .++++.+|+.+++..|.
T Consensus         9 ~~~~L~~L~l~~n~l~-~iP-~~i~~L~~L~~L~l~~n~~~----------------~~~p~-~~~~l~~L~~l~l~~c~   69 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLT-EMP-VEAENVKSKTEYYNAWSEWE----------------RNAPP-GNGEQREMAVSRLRDCL   69 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHH----------------HTSCT-TSCCCHHHHHHHHHHHH
T ss_pred             ccccchhhhcccCchh-hCC-hhHhcccchhhhhccCCccc----------------ccCCc-ccccchhcchhhhhhhh
Confidence            4578889999998884 788 67888888888888865543                56676 77777777655555543


Q ss_pred             CCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccC
Q 005168           99 IDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYH  178 (710)
Q Consensus        99 l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  178 (710)
                      .   ..+++|++++|.+++ ++.    -.++|+.|++++|++..                             +|..   
T Consensus        70 ~---~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~~---  109 (454)
T 1jl5_A           70 D---RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPEL---  109 (454)
T ss_dssp             H---HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCCC---
T ss_pred             c---cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------cccc---
Confidence            2   345555666555553 121    12456666666655442                             2211   


Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  258 (710)
                      .++|++|++++|.+++ +|.    ..++|++|++++|++.+ +| .+..+++|++|++++|+++ .+|..    .++|++
T Consensus       110 ~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~  177 (454)
T 1jl5_A          110 PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEF  177 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCE
T ss_pred             cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccE
Confidence            2456666666666553 221    12567777777777765 44 4777777777777777777 45543    347777


Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT  338 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  338 (710)
                      |++++|.+++ +| .|.++++|++|++++|.++ .+|..    .++|++|++++|.+..            +| .++.++
T Consensus       178 L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~------------lp-~~~~l~  237 (454)
T 1jl5_A          178 IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE------------LP-ELQNLP  237 (454)
T ss_dssp             EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS------------CC-CCTTCT
T ss_pred             EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc------------cc-ccCCCC
Confidence            7777777775 34 5777777777777777776 45542    2467777777666552            34 366777


Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      +|++|++++|++.+. |.   ..++|++|++++|.+.+++..   +.+|++|++++|.+++..           ..    
T Consensus       238 ~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~-----------~~----  295 (454)
T 1jl5_A          238 FLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS-----------EL----  295 (454)
T ss_dssp             TCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES-----------CC----
T ss_pred             CCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc-----------Cc----
Confidence            777777777777653 22   236777777777777764322   356777766666655310           01    


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCC-CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD  497 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (710)
                        .++|++|++++|++++..     .+ ++|++|++++|++++ +|..                                
T Consensus       296 --~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~--------------------------------  335 (454)
T 1jl5_A          296 --PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL--------------------------------  335 (454)
T ss_dssp             --CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC--------------------------------
T ss_pred             --CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc--------------------------------
Confidence              146777777777776421     22 467777777777764 3321                                


Q ss_pred             eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC--CCchhhcCCccCCEEeCcCCcCcc
Q 005168          498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG--LIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                    +++|+.|++++|++++ +|.   .+++|++|++++|++++  ..|..+..+        +.|.+.+
T Consensus       336 --------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~  389 (454)
T 1jl5_A          336 --------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLA  389 (454)
T ss_dssp             --------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---
T ss_pred             --------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccc
Confidence                          2367777777777774 333   35677777777777776  344444332        2233333


Q ss_pred             cCCcccccCCCCCEEeccCCcccc--ccCC
Q 005168          576 KIPHQLVELKTLEVFSVAYNNLSG--EILE  603 (710)
Q Consensus       576 ~~~~~l~~l~~L~~L~l~~N~l~~--~~~~  603 (710)
                      .+|..   +++|+.|++++|++++  .+|.
T Consensus       390 ~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          390 EVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ------------------------------
T ss_pred             ccccc---cCcCCEEECCCCcCCccccchh
Confidence            34332   3566666666666665  4444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=333.66  Aligned_cols=324  Identities=19%  Similarity=0.160  Sum_probs=209.6

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEcc
Q 005168          183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNIS  262 (710)
Q Consensus       183 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~  262 (710)
                      +.++.+++.++ .+|..+   .++++.|++++|++.+..+..|..+++|++|++++|.+++..|..+. .+++|++|+|+
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECC
Confidence            46677666665 455433   35777888888888777777777788888888888877743344443 37778888888


Q ss_pred             CCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccce
Q 005168          263 MNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH  342 (710)
Q Consensus       263 ~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~  342 (710)
                      +|.++.+.+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+..           ..+..|.++++|++
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~  156 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-----------ISHRAFSGLNSLEQ  156 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCE-----------ECTTSSTTCTTCCE
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccce-----------eChhhccCCCCCCE
Confidence            88777666667777788888888888777 5555556677777777777666553           45666777777888


Q ss_pred             eeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168          343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS  422 (710)
Q Consensus       343 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~  422 (710)
                      |++++|.+++..+..|..+++|+.|++++|.+.+..+..+.                                    .++
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~------------------------------------~l~  200 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK------------------------------------RLY  200 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC------------------------------------SCT
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc------------------------------------cCc
Confidence            88877777776667777777777777777777765554443                                    344


Q ss_pred             CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168          423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN  502 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (710)
                      +|++|++++|...+..+.......+|+.|++++|.+++..+..+..                                  
T Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  246 (477)
T 2id5_A          201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH----------------------------------  246 (477)
T ss_dssp             TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----------------------------------
T ss_pred             ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----------------------------------
Confidence            4455555444443333333333345555555555554332222322                                  


Q ss_pred             ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168          503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV  582 (710)
Q Consensus       503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~  582 (710)
                               +++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|++++..+..|.
T Consensus       247 ---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          247 ---------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             ---------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             ---------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence                     22555555555555555555566666666666666666666666666666677777777766665555666


Q ss_pred             cCCCCCEEeccCCccccccC
Q 005168          583 ELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       583 ~l~~L~~L~l~~N~l~~~~~  602 (710)
                      .+++|+.|++++|+|.|+|+
T Consensus       318 ~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          318 SVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CGGGCCEEECCSSCEECSGG
T ss_pred             CCcccCEEEccCCCccCccc
Confidence            66667777777777776664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.5e-36  Score=326.08  Aligned_cols=337  Identities=21%  Similarity=0.254  Sum_probs=240.3

Q ss_pred             EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168          233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN  312 (710)
Q Consensus       233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  312 (710)
                      .++.++++++ .+|..+.   ++++.|++++|.++++.+..|.++++|++|+|++|.++ .++...|.++++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence            4444444444 4444332   35555555555555555555555555555555555555 34334444555555555555


Q ss_pred             CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEE
Q 005168          313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVH  391 (710)
Q Consensus       313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~  391 (710)
                      |.+..           ..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+. +++|++|+
T Consensus        90 n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           90 NRLKL-----------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             SCCCS-----------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CcCCc-----------cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            44432           2333455555555555555555555555555566666666666666555555554 55666665


Q ss_pred             ccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccc
Q 005168          392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTL  471 (710)
Q Consensus       392 l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  471 (710)
                      +++|.+++             ..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.....   
T Consensus       159 l~~n~l~~-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---  222 (477)
T 2id5_A          159 LEKCNLTS-------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---  222 (477)
T ss_dssp             EESCCCSS-------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---
T ss_pred             CCCCcCcc-------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---
Confidence            55554432             34456888999999999999999888889999999999999999877666544322   


Q ss_pred             cccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168          472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG  551 (710)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  551 (710)
                                                              ..+|+.|++++|.+++..+..|..+++|++|+|++|.+++
T Consensus       223 ----------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          223 ----------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             ----------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             ----------------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence                                                    2379999999999997766789999999999999999999


Q ss_pred             CCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC----
Q 005168          552 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL----  627 (710)
Q Consensus       552 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~----  627 (710)
                      +.+..|.++++|++|+|++|++.+..|..|..+++|+.|++++|.++...+..+..+..++.+.+.+||+.|+|+.    
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~  342 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF  342 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence            9999999999999999999999999999999999999999999999987777778888999999999999999852    


Q ss_pred             ------------CCCCCCCCCCCccC
Q 005168          628 ------------PICRSPATMSEASI  641 (710)
Q Consensus       628 ------------~~c~~~~~~~~~~~  641 (710)
                                  ..|..|...++..+
T Consensus       343 ~~~~~~~~~~~~~~C~~p~~~~g~~l  368 (477)
T 2id5_A          343 RRRWRLNFNRQQPTCATPEFVQGKEF  368 (477)
T ss_dssp             TTTTSSCCTTCCCBEEESGGGTTCBG
T ss_pred             hhhhccccCccCceeCCchHHcCCch
Confidence                        15777766665544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.5e-35  Score=319.94  Aligned_cols=397  Identities=23%  Similarity=0.293  Sum_probs=227.4

Q ss_pred             cccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168           63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA  142 (710)
Q Consensus        63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~  142 (710)
                      +|++|++++|.+ +.+|. .++++++|++|++++|.+.+                .++ ..+..+.+|+.++++.|..  
T Consensus        12 ~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~----------------~~p-~~~~~l~~L~~l~l~~c~~--   70 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWER----------------NAP-PGNGEQREMAVSRLRDCLD--   70 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHH----------------TSC-TTSCCCHHHHHHHHHHHHH--
T ss_pred             cchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccc----------------cCC-cccccchhcchhhhhhhhc--
Confidence            344444445555 48888 78888888888888876553                222 2345555555555544431  


Q ss_pred             cccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCc
Q 005168          143 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFW  222 (710)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  222 (710)
                                  .++++|++ +++.+++ +|..   .++|++|++++|.+++ +|.    ..++|++|++++|++.+...
T Consensus        71 ------------~~l~~L~l-~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~  128 (454)
T 1jl5_A           71 ------------RQAHELEL-NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD  128 (454)
T ss_dssp             ------------HTCSEEEC-TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS
T ss_pred             ------------cCCCEEEe-cCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC
Confidence                        15666777 5555443 2331   2678888888888876 553    24788888888888775322


Q ss_pred             cCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCC
Q 005168          223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC  302 (710)
Q Consensus       223 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  302 (710)
                      .    .++|++|++++|.++ .+| .+ ..+++|++|++++|++++ +|..   .++|++|++++|.++ .+|.  +.++
T Consensus       129 ~----~~~L~~L~L~~n~l~-~lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l  194 (454)
T 1jl5_A          129 L----PPLLEYLGVSNNQLE-KLP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNL  194 (454)
T ss_dssp             C----CTTCCEEECCSSCCS-SCC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred             C----CCCCCEEECcCCCCC-CCc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCC
Confidence            1    267888888888888 577 33 347788888888888875 4433   357888888888887 5663  5578


Q ss_pred             CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168          303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF  382 (710)
Q Consensus       303 ~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  382 (710)
                      ++|++|++++|.+..            +|..   .++|++|++++|.+. .+| .+..+++|++|++++|++.++++   
T Consensus       195 ~~L~~L~l~~N~l~~------------l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---  254 (454)
T 1jl5_A          195 PFLTAIYADNNSLKK------------LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---  254 (454)
T ss_dssp             TTCCEEECCSSCCSS------------CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---
T ss_pred             CCCCEEECCCCcCCc------------CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---
Confidence            888888887777653            2221   247888888888877 344 37788888888888888876443   


Q ss_pred             CCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccC
Q 005168          383 HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSI  462 (710)
Q Consensus       383 ~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  462 (710)
                      .+.+|+.|++++|.+++              +|..   .++|++|++++|++++.. .   -.++|+.|++++|.+++..
T Consensus       255 ~~~~L~~L~l~~N~l~~--------------l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~  313 (454)
T 1jl5_A          255 LPPSLEALNVRDNYLTD--------------LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC  313 (454)
T ss_dssp             CCTTCCEEECCSSCCSC--------------CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC
T ss_pred             cccccCEEECCCCcccc--------------cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCccc
Confidence            23677777777666553              2221   257777888877777522 1   1257777788777776421


Q ss_pred             CCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEE
Q 005168          463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL  542 (710)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  542 (710)
                       .                                              .+++|+.|++++|++++ +|..   +++|++|
T Consensus       314 -~----------------------------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          314 -D----------------------------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             -C----------------------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             -C----------------------------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence             1                                              02367778888887775 3432   4677888


Q ss_pred             eCCCccCCCCCchhhcCCccCCEEeCcCCcCcc--cCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCC
Q 005168          543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNT  620 (710)
Q Consensus       543 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~  620 (710)
                      ++++|.++++++    .+++|++|++++|++++  .+|..+.        +++.|.+.+.+|..   +..++.+++.+|+
T Consensus       343 ~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~---~~~L~~L~ls~N~  407 (454)
T 1jl5_A          343 IASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL---PQNLKQLHVETNP  407 (454)
T ss_dssp             ECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC------------------------
T ss_pred             ECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc---cCcCCEEECCCCc
Confidence            888887776543    35777888888887776  4444332        23345566655542   3567777888888


Q ss_pred             CCC
Q 005168          621 FLC  623 (710)
Q Consensus       621 ~~c  623 (710)
                      ..+
T Consensus       408 l~~  410 (454)
T 1jl5_A          408 LRE  410 (454)
T ss_dssp             ---
T ss_pred             CCc
Confidence            765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.2e-35  Score=310.31  Aligned_cols=335  Identities=24%  Similarity=0.256  Sum_probs=208.9

Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  258 (710)
                      +++++.++++++.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            456666666666655 344444456666666666666666555555666666666666666665 333333333555566


Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT  338 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  338 (710)
                      |++++|.+..+.+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+..           .   .+..++
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------~---~~~~l~  186 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-----------V---DLSLIP  186 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB-----------C---CGGGCT
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCc-----------c---cccccc
Confidence            666555555444444555555555555555555 4444444455555555555554432           1   133344


Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      +|+.|++++|.+.+.     ...++|++|++++|.+......                                      
T Consensus       187 ~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~--------------------------------------  223 (390)
T 3o6n_A          187 SLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP--------------------------------------  223 (390)
T ss_dssp             TCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC--------------------------------------
T ss_pred             ccceeeccccccccc-----CCCCcceEEECCCCeeeecccc--------------------------------------
Confidence            455555554444321     1223444444444444332111                                      


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                       ..++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..|..                              
T Consensus       224 -~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------  270 (390)
T 3o6n_A          224 -VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK------------------------------  270 (390)
T ss_dssp             -CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT------------------------------
T ss_pred             -ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc------------------------------
Confidence             135677777777777643  45677778888888888777766666655                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                   +++|+.|++++|++++ .+..+..+++|++|+|++|+++++ |..+..+++|++|++++|+++.. +
T Consensus       271 -------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~  334 (390)
T 3o6n_A          271 -------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K  334 (390)
T ss_dssp             -------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred             -------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C
Confidence                         3377888888888775 355567789999999999999965 55678899999999999999854 3


Q ss_pred             cccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       579 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                        +..+++|+.|++++|++.|.+..  ..+..+....+.+++..|.++
T Consensus       335 --~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          335 --LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             --CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             --chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence              67789999999999999998754  344556666667777777643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-33  Score=306.88  Aligned_cols=327  Identities=25%  Similarity=0.346  Sum_probs=229.0

Q ss_pred             ccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCC
Q 005168          176 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS  255 (710)
Q Consensus       176 l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~  255 (710)
                      +..+++|++|++++|.+++..+   +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~  135 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTN  135 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCC
Confidence            4456667777777766664333   3566777777777776665444  666777777777777766 4443  233667


Q ss_pred             ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      |++|++++|.+.+.  ..+.++++|+.|+++ |.+. .++.  +.++++|++|++++|.+..             ...+.
T Consensus       136 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~-------------~~~l~  196 (466)
T 1o6v_A          136 LNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSD-------------ISVLA  196 (466)
T ss_dssp             CSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCC-------------CGGGG
T ss_pred             CCEEECCCCccCCC--hhhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCC-------------Chhhc
Confidence            77777777766643  236667777777775 3443 2332  4466777777776666543             12366


Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.. ....+++|+.|++++|.+.+             ..+
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-------------~~~  260 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-------------LAP  260 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-------------CGG
T ss_pred             cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-------------chh
Confidence            67777777777777765544  566777777777777766542 22226677777666665543             212


Q ss_pred             hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168          416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ  495 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (710)
                        +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..                           
T Consensus       261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~---------------------------  307 (466)
T 1o6v_A          261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN---------------------------  307 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG---------------------------
T ss_pred             --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC---------------------------
Confidence              6678889999999999886544  7888999999999998875443  322                           


Q ss_pred             cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                      +++|+.|++++|++++..|  +..+++|++|++++|+++++  ..+..+++|+.|++++|++++
T Consensus       308 ----------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          308 ----------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             ----------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             ----------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence                            5589999999999987655  78899999999999999987  578889999999999999997


Q ss_pred             cCCcccccCCCCCEEeccCCccccc
Q 005168          576 KIPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       576 ~~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                      ..|  +..+++|+.|++++|++++.
T Consensus       368 ~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          368 LTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cch--hhcCCCCCEEeccCCcccCC
Confidence            776  78899999999999999873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-33  Score=316.90  Aligned_cols=333  Identities=24%  Similarity=0.264  Sum_probs=204.7

Q ss_pred             CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEE
Q 005168          180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF  259 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L  259 (710)
                      .+++.++++++.+.. +|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|...+..+++|++|
T Consensus        51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence            455666666555542 33333355556666666655555555555555555555555555555 3333333335555555


Q ss_pred             EccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc
Q 005168          260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW  339 (710)
Q Consensus       260 ~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~  339 (710)
                      +|++|.+.++.+..|.++++|++|++++|.++ .++...+.++++|++|++++|.                         
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-------------------------  182 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR-------------------------  182 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSC-------------------------
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCC-------------------------
Confidence            55555555444444455555555555555554 3343334445555555554444                         


Q ss_pred             cceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhh
Q 005168          340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG  419 (710)
Q Consensus       340 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~  419 (710)
                                +++..   +..+++|+.|++++|.+.+..    .+.+|+.|++++|.+...              +..+ 
T Consensus       183 ----------l~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~--------------~~~~-  230 (597)
T 3oja_B          183 ----------LTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RGPV-  230 (597)
T ss_dssp             ----------CSBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE--------------ECSC-
T ss_pred             ----------CCCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc--------------cccc-
Confidence                      44321   233344445555554444321    123455554444444321              1111 


Q ss_pred             cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168          420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT  499 (710)
Q Consensus       420 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (710)
                       .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|..+                              
T Consensus       231 -~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------------  277 (597)
T 3oja_B          231 -NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM------------------------------  277 (597)
T ss_dssp             -CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC------------------------------
T ss_pred             -CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc------------------------------
Confidence             2467778888887774  3567777888888888888877777666553                              


Q ss_pred             eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCc
Q 005168          500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH  579 (710)
Q Consensus       500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~  579 (710)
                                   ++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++++ |..+..+++|+.|+|++|++.+. | 
T Consensus       278 -------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~-  340 (597)
T 3oja_B          278 -------------QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K-  340 (597)
T ss_dssp             -------------SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred             -------------cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C-
Confidence                         378888888888875 455667789999999999999965 56678899999999999999854 3 


Q ss_pred             ccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCC
Q 005168          580 QLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGL  625 (710)
Q Consensus       580 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~  625 (710)
                       +..+++|+.|++++|+|.|.+..  ..+..+....+.+++..|+.
T Consensus       341 -~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred             -hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence             66788999999999999998754  34556666667788877765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6e-33  Score=299.83  Aligned_cols=269  Identities=22%  Similarity=0.204  Sum_probs=173.2

Q ss_pred             CCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCC
Q 005168            8 SFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFN   87 (710)
Q Consensus         8 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~   87 (710)
                      .+....+.++.++++|++|++++|.++ .++  .|..+++|++|++++|+++                 .++   +.+++
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~-----------------~~~---~~~l~   85 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNIT-----------------TLD---LSQNT   85 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCS-----------------CCC---CTTCT
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCC-----------------eEc---cccCC
Confidence            344555667888999999999999988 455  6889999999999988876                 232   55666


Q ss_pred             CCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCC
Q 005168           88 NLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG  167 (710)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (710)
                      +|++|++++|+++++                    ++.++++|+.|++++|++....      +...++|++|++ +++.
T Consensus        86 ~L~~L~Ls~N~l~~~--------------------~~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l-~~N~  138 (457)
T 3bz5_A           86 NLTYLACDSNKLTNL--------------------DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNC-ARNT  138 (457)
T ss_dssp             TCSEEECCSSCCSCC--------------------CCTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEEC-TTSC
T ss_pred             CCCEEECcCCCCcee--------------------ecCCCCcCCEEECCCCcCCeec------CCCCCcCCEEEC-CCCc
Confidence            777777777766542                    1334445555555555443321      223334555555 4443


Q ss_pred             CCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCCh
Q 005168          168 DGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPV  247 (710)
Q Consensus       168 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  247 (710)
                      +.+. +  +..+++|++|++++|...+.++   +..+++|+.|++++|++++. +  +..+++|++|++++|.++ .++ 
T Consensus       139 l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~-~~~-  207 (457)
T 3bz5_A          139 LTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT-KLD-  207 (457)
T ss_dssp             CSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS-CCC-
T ss_pred             ccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC-eec-
Confidence            3331 1  4566778888888775544443   25678888888888888773 2  777888888888888887 443 


Q ss_pred             hhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCc
Q 005168          248 EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLS  327 (710)
Q Consensus       248 ~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~  327 (710)
                       +. .+++|++|++++|++++ +|  +..+++|+.|++++|+++ .+|.   ..+++|+.|++++|.+.. +++++|.+.
T Consensus       208 -l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~L~~-L~l~~n~~~  277 (457)
T 3bz5_A          208 -LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDLLE-IDLTHNTQL  277 (457)
T ss_dssp             -CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCCCSC-CCCTTCTTC
T ss_pred             -cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCCCCE-EECCCCccC
Confidence             33 37788888888888886 34  778888888888888888 4552   257788888877765543 444444433


Q ss_pred             cCcCccccCCCccceeeCccCc
Q 005168          328 GNIPGWLGNLTWLIHIIMPENH  349 (710)
Q Consensus       328 ~~~~~~~~~l~~L~~L~L~~n~  349 (710)
                      +.+|  ++.+++|+.|++++|.
T Consensus       278 ~~~~--~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          278 IYFQ--AEGCRKIKELDVTHNT  297 (457)
T ss_dssp             CEEE--CTTCTTCCCCCCTTCT
T ss_pred             Cccc--ccccccCCEEECCCCc
Confidence            3332  2333444444444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-32  Score=299.55  Aligned_cols=346  Identities=23%  Similarity=0.315  Sum_probs=291.9

Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV  258 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  258 (710)
                      +++++.|+++++.+.. +|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence            4689999999998874 554  3689999999999999988655  899999999999999998 5554  445899999


Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT  338 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  338 (710)
                      |++++|.+.+..+  +.++++|++|++++|.+. .++.  +.++++|++|++++ .+..             ...+..++
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~-------------~~~~~~l~  177 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTD-------------LKPLANLT  177 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCC-------------CGGGTTCT
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccC-------------chhhccCC
Confidence            9999999997643  899999999999999998 6654  56899999999863 3321             23488999


Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++              + ..+
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------~-~~l  239 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--------------I-GTL  239 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------C-GGG
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------c-hhh
Confidence            999999999998865  348899999999999999987765 2238899999998887763              1 357


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      ..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..                              
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------  285 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------  285 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence            789999999999999986654  8899999999999999986544  333                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                   +++|+.|++++|++++..+  +..+++|++|+|++|+++++.+  +..+++|++|++++|++++.  
T Consensus       286 -------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  346 (466)
T 1o6v_A          286 -------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--  346 (466)
T ss_dssp             -------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             -------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence                         4589999999999997654  8899999999999999998866  78999999999999999965  


Q ss_pred             cccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168          579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG  624 (710)
Q Consensus       579 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~  624 (710)
                      ..+..+++|+.|++++|++++..|  +..+..++.+.+.+|++...
T Consensus       347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            468899999999999999998877  57888888888999887763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.8e-33  Score=300.00  Aligned_cols=357  Identities=20%  Similarity=0.221  Sum_probs=198.8

Q ss_pred             hhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccC
Q 005168           41 EFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS  120 (710)
Q Consensus        41 ~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~  120 (710)
                      .++.+++|++|++++|.++                 .+|  .+..+++|++|++++|+++++                  
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~-----------------~~~--~l~~l~~L~~L~Ls~n~l~~~------------------   79 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSIT-----------------DMT--GIEKLTGLTKLICTSNNITTL------------------   79 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCC-----------------CCT--TGGGCTTCSEEECCSSCCSCC------------------
T ss_pred             ChhHcCCCCEEEccCCCcc-----------------cCh--hhcccCCCCEEEccCCcCCeE------------------
Confidence            4555666666666665554                 333  466677777777777666542                  


Q ss_pred             cccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhH
Q 005168          121 LEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL  200 (710)
Q Consensus       121 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~  200 (710)
                        ++..+++|++|++++|++...                             +  +..+++|++|++++|.+++ +|   
T Consensus        80 --~~~~l~~L~~L~Ls~N~l~~~-----------------------------~--~~~l~~L~~L~L~~N~l~~-l~---  122 (457)
T 3bz5_A           80 --DLSQNTNLTYLACDSNKLTNL-----------------------------D--VTPLTKLTYLNCDTNKLTK-LD---  122 (457)
T ss_dssp             --CCTTCTTCSEEECCSSCCSCC-----------------------------C--CTTCTTCCEEECCSSCCSC-CC---
T ss_pred             --ccccCCCCCEEECcCCCCcee-----------------------------e--cCCCCcCCEEECCCCcCCe-ec---
Confidence              144566666777766655321                             1  2344555555555555543 22   


Q ss_pred             hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCC
Q 005168          201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL  280 (710)
Q Consensus       201 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L  280 (710)
                      +..+++|++|++++|++++.   +++.+++|++|++++|...+.++  + ..+++|++|++++|+++++ |  +..+++|
T Consensus       123 ~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~l-~--l~~l~~L  193 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNKITEL-D--VSQNKLL  193 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSCCCCC-C--CTTCTTC
T ss_pred             CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCcccee-c--cccCCCC
Confidence            24455555555555555542   24455555555555553222332  1 1244555555555555542 2  4445555


Q ss_pred             CEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcC
Q 005168          281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ  360 (710)
Q Consensus       281 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  360 (710)
                      +.|++++|.++ .++   +..+++|++|++++|.+..            +|  +..+++|++|++++|.+++..   +..
T Consensus       194 ~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~------------ip--~~~l~~L~~L~l~~N~l~~~~---~~~  252 (457)
T 3bz5_A          194 NRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE------------ID--VTPLTQLTYFDCSVNPLTELD---VST  252 (457)
T ss_dssp             CEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             CEEECcCCcCC-eec---cccCCCCCEEECcCCcccc------------cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence            55555555554 222   2344455555544444332            12  344444555555555444432   223


Q ss_pred             CCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc
Q 005168          361 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV  440 (710)
Q Consensus       361 l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  440 (710)
                      +++|+.|++++|++             +.+             ++++|.+.+.+|  ++.+++|+.|++++|...+.+|.
T Consensus       253 l~~L~~L~l~~n~L-------------~~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          253 LSKLTTLHCIQTDL-------------LEI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CTTCCEEECTTCCC-------------SCC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CCCCCEEeccCCCC-------------CEE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            44444454444322             222             233333333333  34456666666666665544442


Q ss_pred             ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEEC
Q 005168          441 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL  520 (710)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  520 (710)
                         ..++|+.|++++|                                                        ++|+.|++
T Consensus       305 ---~~~~L~~L~l~~~--------------------------------------------------------~~L~~L~L  325 (457)
T 3bz5_A          305 ---QAAGITELDLSQN--------------------------------------------------------PKLVYLYL  325 (457)
T ss_dssp             ---TTCCCSCCCCTTC--------------------------------------------------------TTCCEEEC
T ss_pred             ---CCCcceEechhhc--------------------------------------------------------ccCCEEEC
Confidence               2344555555443                                                        37889999


Q ss_pred             cCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccc
Q 005168          521 SCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       521 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                      ++|++++.   .+..+++|+.|++++|+++++        ++|+.|++++|++.+.     ..+..|+.+++++|.+++.
T Consensus       326 ~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~  389 (457)
T 3bz5_A          326 NNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA  389 (457)
T ss_dssp             TTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE
T ss_pred             CCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEE
Confidence            99999974   388899999999999999864        4677778899988865     2445677889999999998


Q ss_pred             cCCC
Q 005168          601 ILEW  604 (710)
Q Consensus       601 ~~~~  604 (710)
                      +|..
T Consensus       390 ip~~  393 (457)
T 3bz5_A          390 VSPD  393 (457)
T ss_dssp             CCTT
T ss_pred             cChh
Confidence            8764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-33  Score=295.18  Aligned_cols=313  Identities=21%  Similarity=0.214  Sum_probs=245.4

Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      ++++++|++++|.++ .+|..++..+++|++|++++|.+.++.+.+|.++++|++|++++|.++ .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            567777888877777 677776666778888888888877777777788888888888888877 666666667788888


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      |++++|.+.+           ..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+...  ..+++|
T Consensus       122 L~L~~n~l~~-----------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L  188 (390)
T 3o6n_A          122 LVLERNDLSS-----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL  188 (390)
T ss_dssp             EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTC
T ss_pred             EECCCCccCc-----------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--cccccc
Confidence            8777776653           344446777888888888888877777778888888888888888776531  225678


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD  467 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  467 (710)
                      +.+++++|.+.+.                  ...++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+.
T Consensus       189 ~~L~l~~n~l~~~------------------~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          189 FHANVSYNLLSTL------------------AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             SEEECCSSCCSEE------------------ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred             ceeeccccccccc------------------CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc
Confidence            8887777765531                  224689999999999985533   2357999999999998753  2333


Q ss_pred             cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168          468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN  547 (710)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  547 (710)
                      .                                           +++|+.|++++|.+++..|..|..+++|++|+|++|
T Consensus       246 ~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          246 N-------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             G-------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             C-------------------------------------------CCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence            2                                           558999999999999988999999999999999999


Q ss_pred             cCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          548 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +++++ +..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++...   +..+..++.+++.+|++.|+|.
T Consensus       283 ~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          283 RLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             cCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence            99976 455678999999999999999 56777888999999999999998653   4677888999999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-32  Score=282.80  Aligned_cols=305  Identities=22%  Similarity=0.284  Sum_probs=197.7

Q ss_pred             cCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCE
Q 005168          203 NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL  282 (710)
Q Consensus       203 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~  282 (710)
                      .+++|++|+++++.+....  .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  ++|.++++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            3455555555555554321  2455555666666655555 3333  22355666666666655542  24556666666


Q ss_pred             EeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCC
Q 005168          283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY  362 (710)
Q Consensus       283 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  362 (710)
                      |++++|.+. .++.  +..+++|++|++++|....            ....+..+++|++|++++|.+.+..+  +..++
T Consensus       115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~  177 (347)
T 4fmz_A          115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNLS------------DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT  177 (347)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCC------------CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred             EECcCCccc-Cchh--hccCCceeEEECCCCCCcc------------cccchhhCCCCcEEEecCCCcCCchh--hccCC
Confidence            666666665 4443  3356666666666554332            12235566666666666666554333  55666


Q ss_pred             CCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc
Q 005168          363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL  442 (710)
Q Consensus       363 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  442 (710)
                      +|++|++++|.+.+..+ ...+++|+.+++++|.+.+             ..+  +..+++|++|++++|.+++..+  +
T Consensus       178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-------------ITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------CGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCEEEccCCccccccc-ccCCCccceeecccCCCCC-------------Cch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            66666666666654433 2225566666555555442             111  5667889999999998885544  7


Q ss_pred             CCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC
Q 005168          443 CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC  522 (710)
Q Consensus       443 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  522 (710)
                      ..+++|++|++++|.+++.  +.+..                                           +++|+.|++++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------------------l~~L~~L~l~~  274 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKD-------------------------------------------LTKLKMLNVGS  274 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTT-------------------------------------------CTTCCEEECCS
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhc-------------------------------------------CCCcCEEEccC
Confidence            8888999999999887743  22222                                           45889999999


Q ss_pred             CcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          523 NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       523 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      |.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            988865  468889999999999999998888999999999999999999987666  788999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-32  Score=306.02  Aligned_cols=313  Identities=22%  Similarity=0.226  Sum_probs=269.4

Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..|.++++|++|+|++|.++ .+|...|.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            578899999999998 888888777999999999999999888889999999999999999998 788888888999999


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      |++++|.+..           ..+..|+++++|++|++++|.+.+..|..|..+++|++|++++|.+.+....  .+++|
T Consensus       128 L~L~~n~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L  194 (597)
T 3oja_B          128 LVLERNDLSS-----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSL  194 (597)
T ss_dssp             EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTC
T ss_pred             EEeeCCCCCC-----------CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhh
Confidence            9998887764           5556689999999999999999999999999999999999999999876422  26789


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD  467 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  467 (710)
                      +.|++++|.+.+                  +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  ..+.
T Consensus       195 ~~L~l~~n~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          195 FHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             SEEECCSSCCSE------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGG
T ss_pred             hhhhcccCcccc------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhc
Confidence            999988887764                  223468999999999998554332   36899999999998852  3333


Q ss_pred             cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168          468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN  547 (710)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  547 (710)
                      .                                           +++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus       252 ~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  288 (597)
T 3oja_B          252 N-------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  288 (597)
T ss_dssp             G-------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred             c-------------------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence            3                                           559999999999999999999999999999999999


Q ss_pred             cCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          548 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      .++++ |..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|++....   +..+..+..+.+.+|++.|+|.
T Consensus       289 ~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          289 RLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             CCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence            99986 556678999999999999999 67777889999999999999998753   4567788899999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=8.2e-31  Score=274.46  Aligned_cols=307  Identities=21%  Similarity=0.330  Sum_probs=259.3

Q ss_pred             CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168          224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV  303 (710)
Q Consensus       224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  303 (710)
                      .+..+++|++|+++++.+. .+|. + ..+++|++|++++|.++++.+  |.++++|++|++++|.++ .++  .+.+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCT
T ss_pred             cchhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCC
Confidence            3557899999999999998 6764 3 348999999999999996544  899999999999999998 665  366899


Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH  383 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  383 (710)
                      +|++|++++|.+..            .+. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ ...
T Consensus       111 ~L~~L~l~~n~i~~------------~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~  175 (347)
T 4fmz_A          111 NLRELYLNEDNISD------------ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IAN  175 (347)
T ss_dssp             TCSEEECTTSCCCC------------CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred             cCCEEECcCCcccC------------chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hcc
Confidence            99999999998764            233 8899999999999996664444 48999999999999999987655 233


Q ss_pred             CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC
Q 005168          384 PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP  463 (710)
Q Consensus       384 ~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  463 (710)
                      +++|++|++++|.+.+              ++. +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+
T Consensus       176 l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIED--------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             CTTCSEEECTTSCCCC--------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCEEEccCCcccc--------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence            8899999888887663              222 7778999999999999986544  8889999999999999885443


Q ss_pred             CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEe
Q 005168          464 PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLN  543 (710)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  543 (710)
                        +..                                           +++|+.|++++|.+++.  ..+..+++|++|+
T Consensus       239 --~~~-------------------------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  271 (347)
T 4fmz_A          239 --LAN-------------------------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLN  271 (347)
T ss_dssp             --GTT-------------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             --hhc-------------------------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence              333                                           55899999999999864  5689999999999


Q ss_pred             CCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCC
Q 005168          544 LSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTF  621 (710)
Q Consensus       544 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~  621 (710)
                      +++|.++++  ..+..+++|++|++++|++.+..++.+..+++|+.|++++|++++..|  +..++.++.+++.+|+.
T Consensus       272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            999999987  568999999999999999999999999999999999999999998777  57888888888888864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=6e-31  Score=273.43  Aligned_cols=288  Identities=23%  Similarity=0.305  Sum_probs=195.4

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM  309 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  309 (710)
                      .++.++++++.++ .+|..++   ++++.|++++|.+.++.+.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4666666666666 6665543   46677777777776666666777777777777777766 45445555667777777


Q ss_pred             ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc--cCCCCCCCCCc
Q 005168          310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG--SLPSCFHPLSI  387 (710)
Q Consensus       310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~--~~~~~~~~~~L  387 (710)
                      +++|.+.+            +|..+.  ++|++|++++|.+....+..|.++++|++|++++|.+..  ..+..+...+|
T Consensus       109 L~~n~l~~------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L  174 (332)
T 2ft3_A          109 ISKNHLVE------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL  174 (332)
T ss_dssp             CCSSCCCS------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred             CCCCcCCc------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence            66666553            233222  567777777777776666667777777777777777753  44555543366


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD  467 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  467 (710)
                      +.|++++|.+++              +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus       175 ~~L~l~~n~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          175 NYLRISEAKLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCCBCCSSBCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CEEECcCCCCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            666666655542              222222  5788888888888877777788888888888888888776666665


Q ss_pred             cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168          468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN  547 (710)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  547 (710)
                      .                                           +++|+.|++++|+++ .+|..+..+++|++|++++|
T Consensus       239 ~-------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          239 F-------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             G-------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred             C-------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence            4                                           347888888888887 56667888888888888888


Q ss_pred             cCCCCCchhhcCC------ccCCEEeCcCCcCc--ccCCcccccCCCCCEEeccCCc
Q 005168          548 NLTGLIPSTFSNL------KHIESLDLSYNKLN--GKIPHQLVELKTLEVFSVAYNN  596 (710)
Q Consensus       548 ~l~~~~~~~~~~l------~~L~~L~Ls~N~i~--~~~~~~l~~l~~L~~L~l~~N~  596 (710)
                      .++++.+..|...      ++|+.|++++|++.  ...|..+..+++|+.+++++|.
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8888877777653      56888888888876  5677778888888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.6e-30  Score=269.99  Aligned_cols=289  Identities=23%  Similarity=0.241  Sum_probs=163.2

Q ss_pred             CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168          206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL  285 (710)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L  285 (710)
                      +++.++++++.+.. +|..+  .+.+++|++++|.++ .++...+..+++|++|++++|.+.++.|.+|.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            45555555555443 22222  245555555555555 333332333555555555555555555555555555555555


Q ss_pred             cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCC
Q 005168          286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYS  363 (710)
Q Consensus       286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  363 (710)
                      ++|.++ .+|..++   ++|++|++++|.+..           ..+..|.++++|++|++++|.+..  ..+..|.++++
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITK-----------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCB-----------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccc-----------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence            555555 4544433   355555544444332           333344555555555555555432  33444555555


Q ss_pred             CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC
Q 005168          364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC  443 (710)
Q Consensus       364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  443 (710)
                      |++|++++|.+..++                                     ..+  .++|++|++++|++++..+..+.
T Consensus       173 L~~L~l~~n~l~~l~-------------------------------------~~~--~~~L~~L~l~~n~l~~~~~~~~~  213 (330)
T 1xku_A          173 LSYIRIADTNITTIP-------------------------------------QGL--PPSLTELHLDGNKITKVDAASLK  213 (330)
T ss_dssp             CCEEECCSSCCCSCC-------------------------------------SSC--CTTCSEEECTTSCCCEECTGGGT
T ss_pred             cCEEECCCCccccCC-------------------------------------ccc--cccCCEEECCCCcCCccCHHHhc
Confidence            555555555444221                                     111  15677777777777766666777


Q ss_pred             CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCC
Q 005168          444 ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN  523 (710)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  523 (710)
                      .+++|+.|++++|.+++..+..+..                                           +++|+.|++++|
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------l~~L~~L~L~~N  250 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNGSLAN-------------------------------------------TPHLRELHLNNN  250 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTGGG-------------------------------------------STTCCEEECCSS
T ss_pred             CCCCCCEEECCCCcCceeChhhccC-------------------------------------------CCCCCEEECCCC
Confidence            7777777777777776665555544                                           336777777777


Q ss_pred             cCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCC------ccCCEEeCcCCcCcc--cCCcccccCCCCCEEeccCC
Q 005168          524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLEVFSVAYN  595 (710)
Q Consensus       524 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N  595 (710)
                      .++ .+|..+..+++|++|++++|+++++.+..|...      ++++.|++++|++..  ..|..|..+.+++.+++++|
T Consensus       251 ~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            777 456667777777777777777777776666433      567777777777753  45566777777777777776


Q ss_pred             c
Q 005168          596 N  596 (710)
Q Consensus       596 ~  596 (710)
                      +
T Consensus       330 ~  330 (330)
T 1xku_A          330 K  330 (330)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2e-31  Score=273.91  Aligned_cols=259  Identities=34%  Similarity=0.529  Sum_probs=215.0

Q ss_pred             CCCCEEeccCCccCC--cCChhhhcCCCCCcEEEccC-CCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc
Q 005168          278 KFLQLLDLSNNQLTG--EIPEHLAVGCVNLQFLMLSN-NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI  354 (710)
Q Consensus       278 ~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~Ls~-n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  354 (710)
                      .+++.|++++|.+.+  .+|..+. ++++|++|++++ |.+.           +.+|..|..+++|++|++++|.+++..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLV-----------GPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEE-----------SCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCccc-----------ccCChhHhcCCCCCEEECcCCeeCCcC
Confidence            467788888888776  5665443 577777777763 5444           256677777777777777777777677


Q ss_pred             chhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcc
Q 005168          355 PVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL  434 (710)
Q Consensus       355 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  434 (710)
                      |..|..+++|++|++++|.+.+                                    ..|..+..+++|++|++++|++
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~------------------------------------~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSG------------------------------------TLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEES------------------------------------CCCGGGGGCTTCCEEECCSSCC
T ss_pred             CHHHhCCCCCCEEeCCCCccCC------------------------------------cCChHHhcCCCCCeEECcCCcc
Confidence            7777777777777777776653                                    4566677889999999999999


Q ss_pred             cccCCcccCCCC-CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccc
Q 005168          435 EGEVPVQLCELN-QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS  513 (710)
Q Consensus       435 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  513 (710)
                      ++..|..+..++ +|++|++++|.+++.+|..+..                                           ++
T Consensus       162 ~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------l~  198 (313)
T 1ogq_A          162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------------------------------------LN  198 (313)
T ss_dssp             EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------------------------------------CC
T ss_pred             cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------------------------------------Cc
Confidence            988888898888 8999999999999888877754                                           22


Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                       |+.|++++|.+++..|..|..+++|+.|+|++|.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|+++
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence             89999999999999999999999999999999999977665 8889999999999999999999999999999999999


Q ss_pred             CCccccccCCCccccccCCcccccCCCCCCCCCCCCC
Q 005168          594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC  630 (710)
Q Consensus       594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c  630 (710)
                      +|++++.+|.. ..++.+..+.+.+|++.|+.|...|
T Consensus       277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             SSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence            99999999986 7889999999999999999877667

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.8e-30  Score=265.79  Aligned_cols=250  Identities=24%  Similarity=0.242  Sum_probs=181.5

Q ss_pred             CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEE
Q 005168          181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN  260 (710)
Q Consensus       181 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~  260 (710)
                      +++.++++++.++ .+|..+   .+.++.|++++|++.+..+..|..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            6899999998887 466543   378999999999999988888999999999999999999544665554 89999999


Q ss_pred             ccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCcc
Q 005168          261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL  340 (710)
Q Consensus       261 L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L  340 (710)
                      +++|.++.+ |..+.  ++|++|++++|.++ .++...+.++++|++|++++|.+..         .+..+..+.++++|
T Consensus       107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L  173 (330)
T 1xku_A          107 LSKNQLKEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKL  173 (330)
T ss_dssp             CCSSCCSBC-CSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTC
T ss_pred             CCCCcCCcc-Chhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCc
Confidence            999999854 44433  79999999999998 8888888899999999999988753         12456789999999


Q ss_pred             ceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhh
Q 005168          341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG  419 (710)
Q Consensus       341 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~  419 (710)
                      ++|++++|.+... |..+.  ++|++|++++|.+.+..+..+. +++|++|++++|.+++             ..+.++.
T Consensus       174 ~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~  237 (330)
T 1xku_A          174 SYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-------------VDNGSLA  237 (330)
T ss_dssp             CEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-------------ECTTTGG
T ss_pred             CEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-------------eChhhcc
Confidence            9999999999864 43333  7899999999988866554444 4455555444443332             2333444


Q ss_pred             cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168          420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC  465 (710)
Q Consensus       420 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  465 (710)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence            4555555555555554 33444445555555555555554433333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.6e-30  Score=267.56  Aligned_cols=288  Identities=25%  Similarity=0.288  Sum_probs=177.0

Q ss_pred             CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168          206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL  285 (710)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L  285 (710)
                      +++.++++++.+.. +|..+  .+++++|++++|.++ .++...+..+++|++|++++|.++++.|.+|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            34455555554442 22222  245566666666655 333322233556666666666666555556666666666666


Q ss_pred             cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCC
Q 005168          286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYS  363 (710)
Q Consensus       286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  363 (710)
                      ++|.++ .+|..++   ++|++|++++|.+..           ..+..|.++++|++|++++|.+..  ..+..|..+ +
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRK-----------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCC-----------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCc-----------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            666665 5555443   456666655555443           334455666666666666666542  445555555 6


Q ss_pred             CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC
Q 005168          364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC  443 (710)
Q Consensus       364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  443 (710)
                      |++|++++|.+.+++...+  ++|++|++++|.++             +..+..+..+++|++|++++|++++..+..+.
T Consensus       174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~-------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ-------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC-------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             cCEEECcCCCCCccCcccc--CCCCEEECCCCcCC-------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            6666666666665443322  46666655444443             24445666777888888888888777666777


Q ss_pred             CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCC
Q 005168          444 ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN  523 (710)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  523 (710)
                      .+++|++|++++|+++ .+|..+..                                           +++|+.|++++|
T Consensus       239 ~l~~L~~L~L~~N~l~-~lp~~l~~-------------------------------------------l~~L~~L~l~~N  274 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS-RVPAGLPD-------------------------------------------LKLLQVVYLHTN  274 (332)
T ss_dssp             GCTTCCEEECCSSCCC-BCCTTGGG-------------------------------------------CTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCcCe-ecChhhhc-------------------------------------------CccCCEEECCCC
Confidence            7888888888888776 45555544                                           347888888888


Q ss_pred             cCCCCCCccccc------cCCCCEEeCCCccCC--CCCchhhcCCccCCEEeCcCCc
Q 005168          524 KLIGHIPPQIGN------LTRIQTLNLSYNNLT--GLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       524 ~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                      ++++..+..|..      ..+|+.|++++|.+.  ++.+.+|..+++|+.+++++|+
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            887776666654      366888899988887  6788888888999999988875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=6.3e-31  Score=270.27  Aligned_cols=254  Identities=28%  Similarity=0.476  Sum_probs=154.9

Q ss_pred             CccEEEccCCcCcc--cCCccCcCCCCCCEEeccC-CccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcC
Q 005168          255 SLYVFNISMNALDG--SIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP  331 (710)
Q Consensus       255 ~L~~L~L~~n~i~~--~~~~~f~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~  331 (710)
                      +++.|++++|.+.+  .+|..|.++++|++|++++ |.+.+.+|..+. ++++|++|++++|.+..           ..|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~-----------~~p  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSG-----------AIP  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEE-----------ECC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCC-----------cCC
Confidence            44555555555544  4445555555555555553 445444444332 45555555554444332           345


Q ss_pred             ccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCc
Q 005168          332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLN  411 (710)
Q Consensus       332 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~  411 (710)
                      ..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..                                 
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---------------------------------  165 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI---------------------------------  165 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC---------------------------------
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC---------------------------------
Confidence            55666666666666666666666666666666666666666665332                                 


Q ss_pred             ccCChhhhcCC-CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccee
Q 005168          412 GSIPDWIGELS-QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFF  490 (710)
Q Consensus       412 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (710)
                         |..+..++ +|++|++++|++++..|..+..++ |++|++++|.+++..|..|..                      
T Consensus       166 ---p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------  219 (313)
T 1ogq_A          166 ---PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------  219 (313)
T ss_dssp             ---CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------
T ss_pred             ---CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------
Confidence               22333333 555555555555555555555554 555555555555555544443                      


Q ss_pred             ecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168          491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY  570 (710)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  570 (710)
                                           +++|+.|++++|.+++..+. +..+++|++|+|++|.+++..|..|..+++|++|++++
T Consensus       220 ---------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          220 ---------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             ---------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ---------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence                                 22556666666666544443 66778888888888888888888888888888888888


Q ss_pred             CcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168          571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       571 N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      |++++.+|+. ..+++|+.+++++|+..|..|
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            8888888876 778888888888888766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.5e-33  Score=303.01  Aligned_cols=353  Identities=19%  Similarity=0.118  Sum_probs=215.7

Q ss_pred             cChhccCCCCCCEEEccCCcCcccCChhHhhcCC----CCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcc
Q 005168          172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT----KLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRG  243 (710)
Q Consensus       172 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~  243 (710)
                      ++..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.+..    .++..+..+++|++|++++|.+++
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            3556667788999999988887766656555566    68899998888874    446678888889999999888874


Q ss_pred             cCChhhhh----cCCCccEEEccCCcCcccC----CccCcCCCCCCEEeccCCccCCcCChhhh----cCCCCCcEEEcc
Q 005168          244 HIPVEIGD----VLPSLYVFNISMNALDGSI----PSSFGNMKFLQLLDLSNNQLTGEIPEHLA----VGCVNLQFLMLS  311 (710)
Q Consensus       244 ~~~~~~~~----~~~~L~~L~L~~n~i~~~~----~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~----~~l~~L~~L~Ls  311 (710)
                      ..+..+..    ..++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+.    ...++|++|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence            33333332    2346888888888877533    45556677888888888877632222222    234577777777


Q ss_pred             CCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc-----chhhcCCCCCCEEECCCCcCcccCCCCCCCCC
Q 005168          312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-----PVEFCQLYSLQILDISDNNISGSLPSCFHPLS  386 (710)
Q Consensus       312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~  386 (710)
                      +|.+...      . ...++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++.....      
T Consensus       208 ~n~l~~~------~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~------  274 (461)
T 1z7x_W          208 SCGVTSD------N-CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------  274 (461)
T ss_dssp             TSCCBTT------H-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH------
T ss_pred             CCCCcHH------H-HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH------
Confidence            7665420      0 0012444556666666666666655432     12222456666666666655431000      


Q ss_pred             cceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC-----CCCCCCEEEccCCccccc
Q 005168          387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC-----ELNQLQLLDLSNNSLHGS  461 (710)
Q Consensus       387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~  461 (710)
                                                .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.
T Consensus       275 --------------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          275 --------------------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             --------------------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             --------------------------HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence                                      1344556677777777777777543322222     235777788877776643


Q ss_pred             CCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc-----c
Q 005168          462 IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN-----L  536 (710)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l  536 (710)
                      ....+...                                       ....++|+.|++++|.+++..+..+..     .
T Consensus       329 ~~~~l~~~---------------------------------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  369 (461)
T 1z7x_W          329 CCSHFSSV---------------------------------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  369 (461)
T ss_dssp             GHHHHHHH---------------------------------------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHH---------------------------------------HhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence            11111000                                       011346777777777776544444432     5


Q ss_pred             CCCCEEeCCCccCCC----CCchhhcCCccCCEEeCcCCcCcccCCccc-----ccCCCCCEEeccCCccccccC
Q 005168          537 TRIQTLNLSYNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQL-----VELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       537 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l-----~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      ++|++|+|++|.+++    ..+..+..+++|++|++++|+++......+     ....+|+.|++.++.+....+
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            688888888888875    456677778888888888888774322222     123467777777777665443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-32  Score=299.65  Aligned_cols=368  Identities=15%  Similarity=0.118  Sum_probs=252.7

Q ss_pred             CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcccCChhhhhcCC-
Q 005168          180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLP-  254 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~-  254 (710)
                      +++++|+++++.++......++..+++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3566777777776654444444667777777777777664    23445666777888888888776444444554454 


Q ss_pred             ---CccEEEccCCcCcc----cCCccCcCCCCCCEEeccCCccCCcCChhh----hcCCCCCcEEEccCCCCcCeeeccC
Q 005168          255 ---SLYVFNISMNALDG----SIPSSFGNMKFLQLLDLSNNQLTGEIPEHL----AVGCVNLQFLMLSNNSLKEGLYLTN  323 (710)
Q Consensus       255 ---~L~~L~L~~n~i~~----~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~----~~~l~~L~~L~Ls~n~l~~~l~l~~  323 (710)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+    +...++|++|++++|.+...     
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----  157 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----  157 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence               68888888888774    346777788888888888887763322222    22355788888877766530     


Q ss_pred             ccCccCcCccccCCCccceeeCccCccccccchhhc-----CCCCCCEEECCCCcCcccC----CCCCC-CCCcceEEcc
Q 005168          324 NSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC-----QLYSLQILDISDNNISGSL----PSCFH-PLSIEQVHLS  393 (710)
Q Consensus       324 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~i~~~~----~~~~~-~~~L~~L~l~  393 (710)
                        ....++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+....    +..+. +++|++|+++
T Consensus       158 --~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  235 (461)
T 1z7x_W          158 --SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  235 (461)
T ss_dssp             --GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             --HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence              0001244566678888888888887755444443     2568888888888777531    22232 6778888777


Q ss_pred             CccccccccccCCCccCcccCChhhhcCCCccEEecCCCccccc----CCcccCCCCCCCEEEccCCcccccCCCCcccc
Q 005168          394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT  469 (710)
Q Consensus       394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  469 (710)
                      +|.+......        ...+..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+...
T Consensus       236 ~n~l~~~~~~--------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          236 SNKLGDVGMA--------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             SSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CCcCChHHHH--------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            7766532100        01122233578999999999999854    46667789999999999999875433322210


Q ss_pred             cccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC----CCccccccCCCCEEeCC
Q 005168          470 TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH----IPPQIGNLTRIQTLNLS  545 (710)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls  545 (710)
                      -                                      ....++|+.|++++|.+++.    .+..+..+++|++|+|+
T Consensus       308 l--------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  349 (461)
T 1z7x_W          308 L--------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS  349 (461)
T ss_dssp             H--------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred             h--------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence            0                                      00124899999999999865    35567778999999999


Q ss_pred             CccCCCCCchhhcC-----CccCCEEeCcCCcCcc----cCCcccccCCCCCEEeccCCccccc
Q 005168          546 YNNLTGLIPSTFSN-----LKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       546 ~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                      +|.+++..+..+..     .++|++|++++|+++.    .+|..+..+++|+.|++++|+++..
T Consensus       350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            99998765555443     6799999999999986    7788888999999999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7.9e-29  Score=267.79  Aligned_cols=251  Identities=22%  Similarity=0.212  Sum_probs=179.1

Q ss_pred             ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      ...++.++..++ .+|..+.  ++++.|+|++|.++ .++...|.++++|++|++++|.+..           +.+..|.
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-----------i~~~~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-----------IEIGAFN  109 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCE-----------ECGGGGT
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCc-----------cChhhcc
Confidence            445555555555 2333332  45666666666665 4554555556666666555555442           3344555


Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      ++++|++|++++|.++...+..|..+++|++|++++|.+..+                                    .+
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------------------------------~~  153 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI------------------------------------PS  153 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE------------------------------------CT
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc------------------------------------CH
Confidence            555555555555555555455555555555555555555433                                    33


Q ss_pred             hhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168          416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP  494 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (710)
                      ..|..+++|++|++++ +.+....+..|.++++|++|++++|.++.. |. +..                          
T Consensus       154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~--------------------------  205 (440)
T 3zyj_A          154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN-LTP--------------------------  205 (440)
T ss_dssp             TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC-CTT--------------------------
T ss_pred             HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc-cCC--------------------------
Confidence            4466677888888887 445545556788888999999999888733 32 222                          


Q ss_pred             CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168          495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~  574 (710)
                                       +++|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+++
T Consensus       206 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          206 -----------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             -----------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             -----------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence                             458999999999999888999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCCCEEeccCCccccccC
Q 005168          575 GKIPHQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       575 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      ...++.+..+++|+.|++++|||.|+|.
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             ccChhHhccccCCCEEEcCCCCccCCCC
Confidence            8888889999999999999999999985

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.8e-29  Score=268.40  Aligned_cols=251  Identities=20%  Similarity=0.187  Sum_probs=179.8

Q ss_pred             ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      ...++.++..++. +|..+.  ++++.|+|++|.++ .++...|.++++|++|++++|.+..           +.+..|.
T Consensus        56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-----------~~~~~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-----------IEVGAFN  120 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTT
T ss_pred             CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCC-----------cChhhcc
Confidence            3455555555553 333322  45666666666665 4444445556666666555554442           3444555


Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      ++++|++|++++|.++...+..|..+++|++|++++|.+..+                                    .+
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------~~  164 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI------------------------------------PS  164 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE------------------------------------CT
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee------------------------------------CH
Confidence            555555555555555555555555555555555555555433                                    33


Q ss_pred             hhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168          416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP  494 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (710)
                      ..|..+++|++|++++ +.+....+..|.++++|++|++++|.+++. | .+..                          
T Consensus       165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~--------------------------  216 (452)
T 3zyi_A          165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP--------------------------  216 (452)
T ss_dssp             TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------------------
T ss_pred             hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc--------------------------
Confidence            4466677888888887 455555556788889999999999988754 2 2222                          


Q ss_pred             CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168          495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~  574 (710)
                                       +++|+.|+|++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|+.|+|++|+++
T Consensus       217 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          217 -----------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             -----------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence                             458999999999999888999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCCCEEeccCCccccccC
Q 005168          575 GKIPHQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       575 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      +..++.+..+++|+.|++++|+|.|+|.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccChHHhccccCCCEEEccCCCcCCCCC
Confidence            8888889999999999999999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.7e-29  Score=254.93  Aligned_cols=286  Identities=21%  Similarity=0.220  Sum_probs=219.8

Q ss_pred             cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168          257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN  336 (710)
Q Consensus       257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~  336 (710)
                      +.++.+++.++. +|..+  .++|++|++++|.++ .+|..+|.++++|++|++++|.+...         +..+..+..
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~   76 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFG   76 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHS
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcc---------cCccccccc
Confidence            567888888874 44433  267889999999888 88888888888899988888876530         112455667


Q ss_pred             CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCCh
Q 005168          337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD  416 (710)
Q Consensus       337 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~  416 (710)
                      +++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+                                   ..
T Consensus        77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------~~  120 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------------------FS  120 (306)
T ss_dssp             CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------------------TT
T ss_pred             ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------------------ch
Confidence            7888888888888774 45557778888888888887764322                                   12


Q ss_pred             hhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccc-cCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168          417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ  495 (710)
Q Consensus       417 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (710)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..                           
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------------  173 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------  173 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh---------------------------
Confidence            45667889999999999888888888899999999999999876 56666655                           


Q ss_pred             cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                      +++|+.|++++|.+++..|..|..+++|++|+|++|.++++.+..|..+++|++|++++|++.+
T Consensus       174 ----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          174 ----------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             ----------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             ----------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence                            3489999999999998888999999999999999999999998899999999999999999999


Q ss_pred             cCCcccccCC-CCCEEeccCCccccccCC-Ccc-ccccCCcccccCCCCCCCCCCCCCCCCCCCCCccC
Q 005168          576 KIPHQLVELK-TLEVFSVAYNNLSGEILE-WTA-QFATFNKSSYEGNTFLCGLPLPICRSPATMSEASI  641 (710)
Q Consensus       576 ~~~~~l~~l~-~L~~L~l~~N~l~~~~~~-~~~-~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~  641 (710)
                      ..|..+..++ +|+.|++++|++.|.|.. |+. ++..........+..       .|..|...++...
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~  299 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPV  299 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBG
T ss_pred             cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCcee
Confidence            9999999884 999999999999998752 221 222222333333433       3566666655533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=266.10  Aligned_cols=280  Identities=20%  Similarity=0.176  Sum_probs=158.5

Q ss_pred             CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEE
Q 005168          229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL  308 (710)
Q Consensus       229 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  308 (710)
                      +.....+.+++.++ .+|..++   ++|++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEE
Confidence            33344555666665 5565443   35666666666666555555666666666666666665 4444444455666666


Q ss_pred             EccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccc-hhhcCCCCCCEEECCCCc-CcccCCCCCCCCC
Q 005168          309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNN-ISGSLPSCFHPLS  386 (710)
Q Consensus       309 ~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~  386 (710)
                      ++++|.+..           ..+..|.++++|++|++++|.+....+ ..|..+++|++|++++|. +.+..+.      
T Consensus       106 ~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------  168 (353)
T 2z80_A          106 DLSYNYLSN-----------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK------  168 (353)
T ss_dssp             ECCSSCCSS-----------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT------
T ss_pred             ECCCCcCCc-----------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH------
Confidence            555555442           222335555555555555555554333 345556666666666552 3333222      


Q ss_pred             cceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168          387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF  466 (710)
Q Consensus       387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  466 (710)
                                                    .+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+
T Consensus       169 ------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  218 (353)
T 2z80_A          169 ------------------------------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV  218 (353)
T ss_dssp             ------------------------------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH
T ss_pred             ------------------------------HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh
Confidence                                          23334444445555554444444445555555555555554432111111


Q ss_pred             ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccc---cccCCCCEEe
Q 005168          467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI---GNLTRIQTLN  543 (710)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~  543 (710)
                      .                                           .+++|+.|++++|.+++..+..+   ...+.++.++
T Consensus       219 ~-------------------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          219 D-------------------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             H-------------------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             h-------------------------------------------hcccccEEECCCCccccccccccccccccchhhccc
Confidence            1                                           12345555555555554333322   2345566777


Q ss_pred             CCCccCCCC----CchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168          544 LSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       544 Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      |+++.+++.    .|+.+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.||.
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            777766642    466788899999999999999954444568999999999999999999863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.2e-28  Score=253.00  Aligned_cols=279  Identities=23%  Similarity=0.248  Sum_probs=221.2

Q ss_pred             CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcC---ChhhhcCCCCCcEE
Q 005168          232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEI---PEHLAVGCVNLQFL  308 (710)
Q Consensus       232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~L~~L  308 (710)
                      +.++.+++.++ .+|..++   +++++|++++|.++.+.+..|.++++|++|++++|.++ .+   +...+ ++++|++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEE
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEE
Confidence            46788888888 8887653   58999999999998776677889999999999999887 44   34444 68999999


Q ss_pred             EccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccc-hhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       309 ~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      ++++|.+..            ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+        
T Consensus        84 ~Ls~n~i~~------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------  143 (306)
T 2z66_A           84 DLSFNGVIT------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------  143 (306)
T ss_dssp             ECCSCSEEE------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------
T ss_pred             ECCCCcccc------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------
Confidence            999888763            56668899999999999999987665 678899999999999998875433        


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-cCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNSLHGSIPPCF  466 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  466 (710)
                                                  ..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+
T Consensus       144 ----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          144 ----------------------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             ----------------------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ----------------------------hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence                                        334556778888888888775 467778888888888888888887777777


Q ss_pred             ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC
Q 005168          467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY  546 (710)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  546 (710)
                      ..                                           +++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus       196 ~~-------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          196 NS-------------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             TT-------------------------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             cC-------------------------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence            55                                           34788888888888887777889999999999999


Q ss_pred             ccCCCCCchhhcCCc-cCCEEeCcCCcCcccCCc--ccccCCCCCEEeccCCccccccCCCccc
Q 005168          547 NNLTGLIPSTFSNLK-HIESLDLSYNKLNGKIPH--QLVELKTLEVFSVAYNNLSGEILEWTAQ  607 (710)
Q Consensus       547 n~l~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~~~--~l~~l~~L~~L~l~~N~l~~~~~~~~~~  607 (710)
                      |.+++..+..+..++ +|++|++++|++.+..+.  ....+...+.+.+..+.+.|..|.++..
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            999999998998885 899999999999864331  1223344555667788899988876544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.8e-27  Score=241.59  Aligned_cols=260  Identities=21%  Similarity=0.237  Sum_probs=177.6

Q ss_pred             CEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcC
Q 005168          281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ  360 (710)
Q Consensus       281 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  360 (710)
                      ++++.+++.++ .+|...   .++|++|++++|.+..           ..+..|..+++|++|++++|.+.+..+..|.+
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            45566666665 555433   2456666655555443           33445566666666666666666655666666


Q ss_pred             CCCCCEEECCCCc-CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC
Q 005168          361 LYSLQILDISDNN-ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP  439 (710)
Q Consensus       361 l~~L~~L~ls~n~-i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  439 (710)
                      +++|++|++++|. +...                                    .|..+..+++|++|++++|.+++..+
T Consensus        79 l~~L~~L~l~~n~~l~~~------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~  122 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSV------------------------------------DPATFHGLGRLHTLHLDRCGLQELGP  122 (285)
T ss_dssp             CTTCCEEECCSCTTCCCC------------------------------------CTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccCCCEEeCCCCCCcccc------------------------------------CHHHhcCCcCCCEEECCCCcCCEECH
Confidence            6777777776665 4432                                    23345556777777777777776667


Q ss_pred             cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEE
Q 005168          440 VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY  519 (710)
Q Consensus       440 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  519 (710)
                      ..+..+++|++|++++|.+++..+..|..                                           +++|+.|+
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------l~~L~~L~  159 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQALPDDTFRD-------------------------------------------LGNLTHLF  159 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------CTTCCEEE
T ss_pred             hHhhCCcCCCEEECCCCcccccCHhHhcc-------------------------------------------CCCccEEE
Confidence            77777778888888888777665555554                                           33788888


Q ss_pred             CcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168          520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       520 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~  599 (710)
                      +++|.+++..+..|..+++|++|++++|.++++.|..|..+++|+.|++++|++++..++.+..+++|+.|++++|++.|
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            88888877777778889999999999999998888999999999999999999997777778899999999999999999


Q ss_pred             ccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCC
Q 005168          600 EILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIG  642 (710)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~  642 (710)
                      .|+.. ..+..+.......+.+.       |..|...++..+.
T Consensus       240 ~~~~~-~~~~~l~~~~~~~~~~~-------c~~p~~l~g~~l~  274 (285)
T 1ozn_A          240 DCRAR-PLWAWLQKFRGSSSEVP-------CSLPQRLAGRDLK  274 (285)
T ss_dssp             SGGGH-HHHHHHHHCCSEECCCB-------EEESGGGTTCBGG
T ss_pred             CCCcH-HHHHHHHhcccccCccc-------cCCchHhCCcChh
Confidence            88641 11122233333344443       5566655555433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.4e-28  Score=253.38  Aligned_cols=282  Identities=20%  Similarity=0.196  Sum_probs=187.0

Q ss_pred             CCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEe
Q 005168          205 TKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD  284 (710)
Q Consensus       205 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~  284 (710)
                      +.....+.+++.++.. |..+  .++|++|++++|.++ .+|...+..+++|++|++++|.++++.+.+|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            3333445555555432 2222  246777777777777 55554444477788888888887777777788888888888


Q ss_pred             ccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcC-ccccCCCccceeeCccC-ccccccchhhcCCC
Q 005168          285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN-HLEGPIPVEFCQLY  362 (710)
Q Consensus       285 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~  362 (710)
                      +++|.++ .+|...+.++++|++|++++|.+..           ..+ ..+..+++|++|++++| .+....+..|.+++
T Consensus       107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-----------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  174 (353)
T 2z80_A          107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-----------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT  174 (353)
T ss_dssp             CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-----------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-----------cCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence            8888887 7777777778888888877777653           223 36777888888888887 46666677788888


Q ss_pred             CCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc
Q 005168          363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL  442 (710)
Q Consensus       363 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  442 (710)
                      +|++|++++|.+.+..+..+                                    ..+++|++|++++|.++...+..+
T Consensus       175 ~L~~L~l~~n~l~~~~~~~l------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~  218 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPKSL------------------------------------KSIQNVSHLILHMKQHILLLEIFV  218 (353)
T ss_dssp             EEEEEEEEETTCCEECTTTT------------------------------------TTCSEEEEEEEECSCSTTHHHHHH
T ss_pred             CCCEEECCCCCcCccCHHHH------------------------------------hccccCCeecCCCCccccchhhhh
Confidence            88888888887775544433                                    334455555555555443222223


Q ss_pred             CCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC
Q 005168          443 CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC  522 (710)
Q Consensus       443 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  522 (710)
                      ..+++|+.|++++|.+++..+..+...                                        ...+.++.+++++
T Consensus       219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~----------------------------------------~~~~~l~~l~L~~  258 (353)
T 2z80_A          219 DVTSSVECLELRDTDLDTFHFSELSTG----------------------------------------ETNSLIKKFTFRN  258 (353)
T ss_dssp             HHTTTEEEEEEESCBCTTCCCC----------------------------------------------CCCCCCEEEEES
T ss_pred             hhcccccEEECCCCccccccccccccc----------------------------------------cccchhhcccccc
Confidence            345555555555555554333222110                                        0123455666666


Q ss_pred             CcCCC----CCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          523 NKLIG----HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       523 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                      +.+.+    .+|..+..+++|++|+|++|+++.+++..|..+++|++|++++|++.+..|
T Consensus       259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            66554    356778899999999999999998877778999999999999999997554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.5e-27  Score=251.83  Aligned_cols=249  Identities=28%  Similarity=0.324  Sum_probs=205.1

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM  309 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  309 (710)
                      ..+.++.++..++ .+|..+.   ++++.|+|++|.+..+.+..|.++++|++|+|++|.++ .++...|.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            3567888888888 8887664   58999999999999888889999999999999999998 78888888899999999


Q ss_pred             ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCc-CcccCCCCCCCCCcc
Q 005168          310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN-ISGSLPSCFHPLSIE  388 (710)
Q Consensus       310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~L~  388 (710)
                      +++|.+..           ..+..|..+++|++|++++|.+....+..|..+++|++|++++|. +..+.          
T Consensus       119 L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------  177 (440)
T 3zyj_A          119 LFDNRLTT-----------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----------  177 (440)
T ss_dssp             CCSSCCSS-----------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------
T ss_pred             CCCCcCCe-----------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC----------
Confidence            88887764           556678999999999999999998888889999999999999854 33222          


Q ss_pred             eEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccc
Q 005168          389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN  468 (710)
Q Consensus       389 ~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  468 (710)
                                                +..|.++++|++|++++|.++. +| .+..+++|+.|++++|.+++..|..|.+
T Consensus       178 --------------------------~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          178 --------------------------EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             --------------------------TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             --------------------------cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence                                      2345567778888888888773 33 3777888888888888888777777766


Q ss_pred             ccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCcc
Q 005168          469 TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN  548 (710)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  548 (710)
                      +.                                           +|+.|+|++|++++..+..|.++++|++|+|++|+
T Consensus       230 l~-------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          230 LM-------------------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CT-------------------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             Cc-------------------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            33                                           78888888888888888888889999999999999


Q ss_pred             CCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          549 LTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       549 l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                      ++++.++.|..+++|+.|+|++|++..
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCccChhHhccccCCCEEEcCCCCccC
Confidence            998888888889999999999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1e-26  Score=252.18  Aligned_cols=248  Identities=23%  Similarity=0.269  Sum_probs=186.7

Q ss_pred             CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168          231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML  310 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  310 (710)
                      ...++.++..++ .+|..+.   ++++.|+|++|.++++.+..|.++++|+.|+|++|.++ .++...|.++++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            456777777777 7776553   47888888888888887888888888888888888887 677777778888888888


Q ss_pred             cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCc-CcccCCCCCCCCCcce
Q 005168          311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN-ISGSLPSCFHPLSIEQ  389 (710)
Q Consensus       311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~L~~  389 (710)
                      ++|.+..           ..+..|..+++|++|++++|.+....+..|..+++|++|++++|. +..+.+          
T Consensus       131 ~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------  189 (452)
T 3zyi_A          131 FDNWLTV-----------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE----------  189 (452)
T ss_dssp             CSSCCSB-----------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----------
T ss_pred             CCCcCCc-----------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh----------
Confidence            7777654           556668888888888888888887777788888888888888743 332222          


Q ss_pred             EEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccc
Q 005168          390 VHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT  469 (710)
Q Consensus       390 L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  469 (710)
                                                ..|.++++|++|++++|.+++. | .+..+++|+.|++++|.+++..|..|.++
T Consensus       190 --------------------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          190 --------------------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             --------------------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             --------------------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence                                      2345566777777777777643 2 36667777777777777776666666553


Q ss_pred             cccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccC
Q 005168          470 TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL  549 (710)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  549 (710)
                                                                 ++|+.|++++|.+++..+..|.++++|++|+|++|++
T Consensus       242 -------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          242 -------------------------------------------SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             -------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             -------------------------------------------cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence                                                       3777777777777777777788888888888888888


Q ss_pred             CCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          550 TGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       550 ~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                      ++++++.|..+++|+.|+|++|++..
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CccChHHhccccCCCEEEccCCCcCC
Confidence            88888888888888888888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.1e-27  Score=236.69  Aligned_cols=255  Identities=23%  Similarity=0.219  Sum_probs=155.5

Q ss_pred             CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEcc
Q 005168          232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS  311 (710)
Q Consensus       232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  311 (710)
                      ++++.+++.++ .+|..+   .+++++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            56677777776 666544   347777777777777666667777777777777777776 4544445556666666665


Q ss_pred             CCC-CcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceE
Q 005168          312 NNS-LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV  390 (710)
Q Consensus       312 ~n~-l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L  390 (710)
                      +|. +..           ..+..|..+++|++|++++|.+.+..+..|..++                            
T Consensus        89 ~n~~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------  129 (285)
T 1ozn_A           89 DNAQLRS-----------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA----------------------------  129 (285)
T ss_dssp             SCTTCCC-----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------------
T ss_pred             CCCCccc-----------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc----------------------------
Confidence            554 332           2234444444444444444444444344444444                            


Q ss_pred             EccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168          391 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT  470 (710)
Q Consensus       391 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  470 (710)
                                                      +|++|++++|++++..+..|..+++|++|++++|.+++..+..|..  
T Consensus       130 --------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--  175 (285)
T 1ozn_A          130 --------------------------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--  175 (285)
T ss_dssp             --------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT--
T ss_pred             --------------------------------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC--
Confidence                                            4444444444444334444555555555555555555444444433  


Q ss_pred             ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168          471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT  550 (710)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  550 (710)
                                                               +++|+.|++++|.+++..|..|..+++|++|++++|.++
T Consensus       176 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          176 -----------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence                                                     225666666666666566677777888888888888888


Q ss_pred             CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcc
Q 005168          551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTA  606 (710)
Q Consensus       551 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  606 (710)
                      ++.++.+..+++|++|++++|++....+.. .-...++.+....+.+.|..|..+.
T Consensus       215 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          215 ALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             cCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            888888888888888888888887544321 1112344555778888888887543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.3e-25  Score=247.51  Aligned_cols=268  Identities=26%  Similarity=0.255  Sum_probs=159.3

Q ss_pred             CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168          206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL  285 (710)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L  285 (710)
                      +++.|+++++.++. +|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|++++ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            46666666666653 333332  55666666666665 5554    24566666666666553 222   4555666666


Q ss_pred             cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCC
Q 005168          286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ  365 (710)
Q Consensus       286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  365 (710)
                      ++|.++ .+|.    .+++|++|++++|.+..            +|..   +++|++|++++|.+++. |.   ..++|+
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~------------lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~  164 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS------------LPVL---PPGLQELSVSDNQLASL-PA---LPSELC  164 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSC------------CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCC
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCc------------CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCC
Confidence            666655 4444    34555555555554442            1211   24445555555544432 11   123444


Q ss_pred             EEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCC
Q 005168          366 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL  445 (710)
Q Consensus       366 ~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  445 (710)
                      .|++++|.++++                                     |   ..+++|+.|++++|.+++. |.   .+
T Consensus       165 ~L~L~~N~l~~l-------------------------------------~---~~~~~L~~L~Ls~N~l~~l-~~---~~  200 (622)
T 3g06_A          165 KLWAYNNQLTSL-------------------------------------P---MLPSGLQELSVSDNQLASL-PT---LP  200 (622)
T ss_dssp             EEECCSSCCSCC-------------------------------------C---CCCTTCCEEECCSSCCSCC-CC---CC
T ss_pred             EEECCCCCCCCC-------------------------------------c---ccCCCCcEEECCCCCCCCC-CC---cc
Confidence            444444444422                                     2   2246777777777777743 22   24


Q ss_pred             CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcC
Q 005168          446 NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL  525 (710)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  525 (710)
                      ++|+.|++++|.++.. |..                                              +++|+.|++++|.+
T Consensus       201 ~~L~~L~L~~N~l~~l-~~~----------------------------------------------~~~L~~L~Ls~N~L  233 (622)
T 3g06_A          201 SELYKLWAYNNRLTSL-PAL----------------------------------------------PSGLKELIVSGNRL  233 (622)
T ss_dssp             TTCCEEECCSSCCSSC-CCC----------------------------------------------CTTCCEEECCSSCC
T ss_pred             chhhEEECcCCccccc-CCC----------------------------------------------CCCCCEEEccCCcc
Confidence            6778888888777632 211                                              23678888888888


Q ss_pred             CCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCc
Q 005168          526 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT  605 (710)
Q Consensus       526 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  605 (710)
                      ++ +|   ..+++|+.|+|++|.|+.+++    .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++..|..+
T Consensus       234 ~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          234 TS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             SC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             Cc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            75 33   455788888888888886654    5678888888888888 667778888888888888888887776655


Q ss_pred             cccc
Q 005168          606 AQFA  609 (710)
Q Consensus       606 ~~~~  609 (710)
                      ..+.
T Consensus       305 ~~L~  308 (622)
T 3g06_A          305 REIT  308 (622)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            4443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.3e-25  Score=232.08  Aligned_cols=235  Identities=22%  Similarity=0.250  Sum_probs=138.9

Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      .+.+++|++++|.++ .+|..++. +++|++|++++|.+. .+|..|.++++|++|++++|.++ .+|..+. ++++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence            355666777777766 66666655 667777777777766 55666666777777777777766 6665533 5666666


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      |++++|.+..           .+|..+..      .         ..+..|.++++|++|++++|.++            
T Consensus       155 L~L~~n~~~~-----------~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~------------  196 (328)
T 4fcg_A          155 LSIRACPELT-----------ELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR------------  196 (328)
T ss_dssp             EEEEEETTCC-----------CCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC------------
T ss_pred             EECCCCCCcc-----------ccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC------------
Confidence            6666554432           23332221      0         01122344555555555555544            


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD  467 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  467 (710)
                                               .+|..+..+++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+.
T Consensus       197 -------------------------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          197 -------------------------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             -------------------------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             -------------------------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence                                     223334445555555555555553 333455566666666666665555555554


Q ss_pred             cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168          468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN  547 (710)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  547 (710)
                      .+                                           ++|+.|++++|.+.+.+|..+.++++|++|+|++|
T Consensus       251 ~l-------------------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          251 GR-------------------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CC-------------------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CC-------------------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            42                                           25666666666666666666677777777777777


Q ss_pred             cCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168          548 NLTGLIPSTFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~  574 (710)
                      .+.+..|+.+.++++|+.+++..+.+.
T Consensus       288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          288 VNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CchhhccHHHhhccCceEEeCCHHHHH
Confidence            777777777777777777777666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-27  Score=244.91  Aligned_cols=100  Identities=22%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      +|+.|++++|.+++..  ....+++|++|+|++|+++++++. |..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus       170 ~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          170 TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             cCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            4444444444444331  112355666666666666655443 556666666666666666 345556666666666666


Q ss_pred             CCccccc-cCCCccccccCCccccc
Q 005168          594 YNNLSGE-ILEWTAQFATFNKSSYE  617 (710)
Q Consensus       594 ~N~l~~~-~~~~~~~~~~~~~~~~~  617 (710)
                      +|++.|. .+.++..+..++.+...
T Consensus       246 ~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCccCcCHHHHHhccccceEEECC
Confidence            6666633 24444444444444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.1e-25  Score=232.58  Aligned_cols=235  Identities=20%  Similarity=0.280  Sum_probs=174.2

Q ss_pred             CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168          254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW  333 (710)
Q Consensus       254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~  333 (710)
                      ++++.|++++|.+. .+|..+.++++|++|++++|.++ .+|                                    ..
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp------------------------------------~~  122 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP------------------------------------DT  122 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC------------------------------------SC
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chh------------------------------------HH
Confidence            45555555555555 33444444555555555555554 444                                    34


Q ss_pred             ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCccc
Q 005168          334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGS  413 (710)
Q Consensus       334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~  413 (710)
                      ++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+.     ..                      .
T Consensus       123 ~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~----------------------~  174 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA-----ST----------------------D  174 (328)
T ss_dssp             GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE-----EE----------------------C
T ss_pred             HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh-----hc----------------------c
Confidence            444555555555555555 3455566666666666666655544433221     00                      1


Q ss_pred             CChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          414 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       414 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      .+..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+..                         
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~-------------------------  227 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH-------------------------  227 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------------------------
T ss_pred             chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------------------------
Confidence            2233566899999999999999 678889999999999999999985 4444544                         


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                        +++|+.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..+.++++|++|+|++|++
T Consensus       228 ------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          228 ------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             ------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             ------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence                              45899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccCCCCCEEeccCCcccc
Q 005168          574 NGKIPHQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       574 ~~~~~~~l~~l~~L~~L~l~~N~l~~  599 (710)
                      .+.+|+.+..+++|+.+++..|.+..
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             hhhccHHHhhccCceEEeCCHHHHHH
Confidence            99999999999999999999886653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2e-27  Score=244.90  Aligned_cols=261  Identities=19%  Similarity=0.171  Sum_probs=164.3

Q ss_pred             EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168          233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN  312 (710)
Q Consensus       233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  312 (710)
                      ..+++.+.+. ..+..++..+++|++|++++|.+.+..|..|.++++|++|++++|.+++ ++.  +.++++|++|++++
T Consensus        14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCS
T ss_pred             Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcC
Confidence            3444444444 3344444444556666666666665555556666666666666666552 222  33455555555555


Q ss_pred             CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEc
Q 005168          313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL  392 (710)
Q Consensus       313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l  392 (710)
                      |.+.+                +...++|++|++++|.+.+..+..   +++|++|++++|.+.+                
T Consensus        90 n~l~~----------------l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~----------------  134 (317)
T 3o53_A           90 NYVQE----------------LLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM----------------  134 (317)
T ss_dssp             SEEEE----------------EEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS----------------
T ss_pred             Ccccc----------------ccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC----------------
Confidence            54432                112244455555555444333222   2344444444444442                


Q ss_pred             cCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc-CCCCCCCEEEccCCcccccCCCCcccccc
Q 005168          393 SKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSNNSLHGSIPPCFDNTTL  471 (710)
Q Consensus       393 ~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  471 (710)
                                          ..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+     
T Consensus       135 --------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----  189 (317)
T 3o53_A          135 --------------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----  189 (317)
T ss_dssp             --------------------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-----
T ss_pred             --------------------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-----
Confidence                                233445667788888888888876666655 367888888888888775422211     


Q ss_pred             cccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168          472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG  551 (710)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  551 (710)
                                                              +++|+.|++++|.+++..+ .|..+++|++|+|++|.+++
T Consensus       190 ----------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          190 ----------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred             ----------------------------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc
Confidence                                                    4478888888888886544 48889999999999999986


Q ss_pred             CCchhhcCCccCCEEeCcCCcCc-ccCCcccccCCCCCEEeccCC-cccc
Q 005168          552 LIPSTFSNLKHIESLDLSYNKLN-GKIPHQLVELKTLEVFSVAYN-NLSG  599 (710)
Q Consensus       552 ~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~l~~L~~L~l~~N-~l~~  599 (710)
                      + |..+..+++|+.|++++|++. +..|..+..+++|+.+++++| .+.+
T Consensus       229 l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          229 I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             E-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             h-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            5 556888899999999999998 677778888888898888854 3443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=1.1e-26  Score=261.68  Aligned_cols=418  Identities=13%  Similarity=0.020  Sum_probs=278.6

Q ss_pred             CCccchhhccCCCCCEEECCCCccc---cccC-----------hhhhcCCCCCCEEeCCCCCCC--------C-ccc-cc
Q 005168           10 NNTILSSLTHLSSLRSLNLNGNSLE---GSID-----------VKEFDSLRDLEELDIGENKID--------K-FVV-SK   65 (710)
Q Consensus        10 ~~~~~~~~~~l~~L~~L~Ls~n~i~---~~i~-----------~~~f~~l~~L~~L~Ls~n~l~--------~-l~~-l~   65 (710)
                      ....+..+.++++|++|+++++...   +.++           ...+..+++|++|+|++|.++        . +++ |+
T Consensus        62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~  141 (592)
T 3ogk_B           62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE  141 (592)
T ss_dssp             GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred             ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence            3345566789999999999875421   1111           012237899999999999887        2 445 99


Q ss_pred             EEecCCCcc-ee-ecCHHhhcCCCCCCEEEccCCcCCCC------------CCCcEEEccccccccc---cCcccccCCC
Q 005168           66 ELYLDDTGF-KG-TLDIREFDSFNNLEVLDMSYNKIDNL------------VVPQELRLSDNHFRIP---ISLEPLFNHS  128 (710)
Q Consensus        66 ~L~L~~~~~-~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~------------~~L~~L~L~~~~l~~~---~~~~~l~~l~  128 (710)
                      +|+|++|.. .. .++. ...++++|++|++++|.+++.            ++|++|++++|.+++.   .-...+.+++
T Consensus       142 ~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             EEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             EEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            999999873 21 1222 445899999999999986432            8999999999988621   1112246789


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCC---CccChhccCCCCCCEEEccCCcCcccCChhHhhcCC
Q 005168          129 RLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDG---VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT  205 (710)
Q Consensus       129 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~  205 (710)
                      +|+.|++++|.+.... .   .+...++|++|++ +.+...   ...+..+..+++|+.++++++.. ..+|..+ ..++
T Consensus       221 ~L~~L~L~~~~~~~l~-~---~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~-~~~~  293 (592)
T 3ogk_B          221 SLVSVKVGDFEILELV-G---FFKAAANLEEFCG-GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF-PFAA  293 (592)
T ss_dssp             TCCEEECSSCBGGGGH-H---HHHHCTTCCEEEE-CBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG-GGGG
T ss_pred             CCcEEeccCccHHHHH-H---HHhhhhHHHhhcc-cccccccchHHHHHHhhccccccccCccccch-hHHHHHH-hhcC
Confidence            9999999998876533 1   1344568999999 433222   23445667788999999987532 3455544 7889


Q ss_pred             CCcEEEccCCcccccCc-cCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccC-----------CcCcccC-Cc
Q 005168          206 KLATLFLVNDSLAGPFW-LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM-----------NALDGSI-PS  272 (710)
Q Consensus       206 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~~-~~  272 (710)
                      +|++|++++|.+.+... ..+..+++|++|+++ +.+.......+...+++|++|++++           +.+++.. +.
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            99999999998765333 336789999999999 4444333344445588999999994           5565432 22


Q ss_pred             cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccC-----cCccccCCCccceeeCcc
Q 005168          273 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN-----IPGWLGNLTWLIHIIMPE  347 (710)
Q Consensus       273 ~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~  347 (710)
                      .+.++++|++|+++.|.+++..+..+...+++|++|+++++.       ..|.+++.     ++..+.++++|+.|+++.
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-------REERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------CCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence            245689999999999988866666666569999999997433       12333332     233467799999999975


Q ss_pred             Cc--cccccchhhc-CCCCCCEEECCCCcCcccC-CCC-CCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168          348 NH--LEGPIPVEFC-QLYSLQILDISDNNISGSL-PSC-FHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS  422 (710)
Q Consensus       348 n~--l~~~~~~~~~-~l~~L~~L~ls~n~i~~~~-~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~  422 (710)
                      |.  +++.....+. .+++|++|++++|.+++.. +.. ..+++|++|++++|.++..            .++.....++
T Consensus       446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~~l~  513 (592)
T 3ogk_B          446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER------------AIAAAVTKLP  513 (592)
T ss_dssp             CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH------------HHHHHHHHCS
T ss_pred             CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH------------HHHHHHHhcC
Confidence            43  5555444444 4889999999999987521 111 1256777777766665421            1233344567


Q ss_pred             CccEEecCCCcccccCCccc-CCCCCCCEEEccC
Q 005168          423 QLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSN  455 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~  455 (710)
                      +|++|++++|+++..-...+ ..++.+....+..
T Consensus       514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            77777777777664322222 2455555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.5e-25  Score=222.66  Aligned_cols=191  Identities=21%  Similarity=0.238  Sum_probs=131.3

Q ss_pred             cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcc
Q 005168          333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG  412 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~  412 (710)
                      .|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+                                 
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------------   93 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---------------------------------   93 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT---------------------------------
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh---------------------------------
Confidence            44455555555555555554444555555556666655555543322                                 


Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccccc-CCCCcccccccccccCCCCCccccccceee
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS-IPPCFDNTTLYESYNNSSSLDEKFEISFFI  491 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (710)
                         ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..                       
T Consensus        94 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------  147 (276)
T 2z62_A           94 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------  147 (276)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------
T ss_pred             ---hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------
Confidence               3344456666666666666655555566667777777777766543 3555544                       


Q ss_pred             cCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCC----EEeCCCccCCCCCchhhcCCccCCEEe
Q 005168          492 EGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQ----TLNLSYNNLTGLIPSTFSNLKHIESLD  567 (710)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~  567 (710)
                                          +++|+.|++++|++++..+..|..+++|+    .|++++|.++++.+..+... +|++|+
T Consensus       148 --------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~  206 (276)
T 2z62_A          148 --------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA  206 (276)
T ss_dssp             --------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEE
T ss_pred             --------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEE
Confidence                                33677777777777766666777777776    89999999998887777654 899999


Q ss_pred             CcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168          568 LSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       568 Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      +++|++++..++.+..+++|+.|++++|++.|.|+.
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            999999987777789999999999999999999974

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.2e-27  Score=240.06  Aligned_cols=132  Identities=23%  Similarity=0.213  Sum_probs=75.5

Q ss_pred             CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcc-cCCccCc-------CCCCCCEEeccCCccCCcCChhh
Q 005168          227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG-SIPSSFG-------NMKFLQLLDLSNNQLTGEIPEHL  298 (710)
Q Consensus       227 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~f~-------~l~~L~~L~Ls~n~l~~~i~~~~  298 (710)
                      ..++|+.|++++|.+  .+|..++.   .|+.|++++|.+.. ..|..+.       ++++|++|++++|.+++.+|..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            344566666666666  55665554   26666666666632 2333332       46666666666666665566554


Q ss_pred             h-cCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCC-----CccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168          299 A-VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNL-----TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN  372 (710)
Q Consensus       299 ~-~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  372 (710)
                      | .++++|++|++++|.+..           . |..+..+     ++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~-----------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWAT-----------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSS-----------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             HHhcCCCccEEEccCCCCcc-----------h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence            3 456666666665555543           2 4444444     55666666666666555556666666666666666


Q ss_pred             cCc
Q 005168          373 NIS  375 (710)
Q Consensus       373 ~i~  375 (710)
                      ++.
T Consensus       184 ~l~  186 (312)
T 1wwl_A          184 PEL  186 (312)
T ss_dssp             TTC
T ss_pred             CcC
Confidence            543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.7e-26  Score=249.02  Aligned_cols=158  Identities=20%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168          422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK  501 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (710)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..                                 
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------------------------  166 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------------------------  166 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------------------------
Confidence            44555555555555555555555555555555555555544443320                                 


Q ss_pred             cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                               .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.++++++. |..+++|+.|++++|++++ +|..+
T Consensus       167 ---------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l  233 (487)
T 3oja_A          167 ---------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKAL  233 (487)
T ss_dssp             ---------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred             ---------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhh
Confidence                     02356666666666654422  23477888888888888876655 7778888888888888884 56667


Q ss_pred             ccCCCCCEEeccCCcccccc-CCCccccccCCccccc-------CCCCCCCC
Q 005168          582 VELKTLEVFSVAYNNLSGEI-LEWTAQFATFNKSSYE-------GNTFLCGL  625 (710)
Q Consensus       582 ~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~-------~n~~~c~~  625 (710)
                      ..+++|+.|++++|++.|.+ |.++..+..+..+...       ++++.|.+
T Consensus       234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~  285 (487)
T 3oja_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV  285 (487)
T ss_dssp             CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred             ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence            77888888888888888543 4444444444444433       67777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5.4e-24  Score=236.44  Aligned_cols=174  Identities=25%  Similarity=0.272  Sum_probs=138.0

Q ss_pred             CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEE
Q 005168          180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF  259 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L  259 (710)
                      .+++.|+++++.++ .+|..+.   ++|+.|++++|.+....+    .+++|++|++++|.++ .+|.    .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence            46999999999998 6776652   899999999999986433    5789999999999998 7887    37899999


Q ss_pred             EccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc
Q 005168          260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW  339 (710)
Q Consensus       260 ~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~  339 (710)
                      ++++|.++++. .   .+++|+.|++++|.++ .+|.    .+++|++|++++|.+..            +|.   .+++
T Consensus       107 ~Ls~N~l~~l~-~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~------------l~~---~~~~  162 (622)
T 3g06_A          107 SIFSNPLTHLP-A---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS------------LPA---LPSE  162 (622)
T ss_dssp             EECSCCCCCCC-C---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC------------CCC---CCTT
T ss_pred             ECcCCcCCCCC-C---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC------------cCC---ccCC
Confidence            99999999653 3   5789999999999998 7876    35899999999988764            232   3578


Q ss_pred             cceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccc
Q 005168          340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML  397 (710)
Q Consensus       340 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l  397 (710)
                      |+.|++++|.++.+ |   ..+++|+.|++++|.+++++..   +.+|+.|++++|.+
T Consensus       163 L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l  213 (622)
T 3g06_A          163 LCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL  213 (622)
T ss_dssp             CCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcc
Confidence            99999999999964 4   4578999999999998864331   24445554444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=1.9e-27  Score=267.88  Aligned_cols=385  Identities=14%  Similarity=0.043  Sum_probs=179.0

Q ss_pred             CCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCC-CCC-ccChhccCCCCCCEEEccCCcCcccCChh---H
Q 005168          126 NHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG-DGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNW---L  200 (710)
Q Consensus       126 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---~  200 (710)
                      .+++|++|++++|.+.......+....+ .+|++|++ .+|. ... .++.....+++|++|++++|.+++....+   +
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~L-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARA-DDLETLKL-DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHG-GGCCEEEE-ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhcc-ccCcEEEC-cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            4566666666666544333222111110 13666666 3332 111 01111224555666666665554432221   2


Q ss_pred             hhcCCCCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCc---ccCCcc
Q 005168          201 LENNTKLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD---GSIPSS  273 (710)
Q Consensus       201 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~  273 (710)
                      ...+++|++|++++|.+.+    ..+..+..+++|++|++++|.+. .+|..+.. +++|++|+++.....   ...+..
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccchHHHHHH
Confidence            2455566666665555542    12222344555566666555555 34433332 555555555532211   112233


Q ss_pred             CcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc
Q 005168          274 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP  353 (710)
Q Consensus       274 f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  353 (710)
                      +..+++|+.|+++++... .+|.. +..+++|++|++++|.+...          .....+..+++|++|+++++.....
T Consensus       266 l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~Ls~~~l~~~----------~~~~~~~~~~~L~~L~L~~~~~~~~  333 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIRKLDLLYALLETE----------DHCTLIQKCPNLEVLETRNVIGDRG  333 (592)
T ss_dssp             CCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCCEEEETTCCCCHH----------HHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred             hhccccccccCccccchh-HHHHH-HhhcCCCcEEecCCCcCCHH----------HHHHHHHhCcCCCEEeccCccCHHH
Confidence            444555555555554322 33322 22455555555555543210          0112234455555555552211111


Q ss_pred             cchhhcCCCCCCEEECCC-----------CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168          354 IPVEFCQLYSLQILDISD-----------NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS  422 (710)
Q Consensus       354 ~~~~~~~l~~L~~L~ls~-----------n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~  422 (710)
                      .+..+..+++|++|++++           +.++..                                   .++.....++
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~  378 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------------------GLIALAQGCQ  378 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------------------HHHHHHHHCT
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------------------HHHHHHhhCc
Confidence            222233445555555552           122211                                   0112233456


Q ss_pred             CccEEecCCCcccccCCcccCC-CCCCCEEEcc----CCcccccCCC-CcccccccccccCCCCCccccccceeecCCCc
Q 005168          423 QLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLS----NNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQG  496 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (710)
                      +|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.+.+ .+..                            
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~----------------------------  430 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS----------------------------  430 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH----------------------------
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH----------------------------
Confidence            6777766666665544444433 6667777765    3344321110 0000                            


Q ss_pred             ceeeccccceecccccccccEEECcCCc--CCCCCCcccc-ccCCCCEEeCCCccCCCC-CchhhcCCccCCEEeCcCCc
Q 005168          497 DFTTKNIAYIYQGKVLSLLSGLYLSCNK--LIGHIPPQIG-NLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~  572 (710)
                               .  ...+++|+.|++++|.  +++.....+. .+++|++|+|++|.+++. .+..+.++++|++|+|++|+
T Consensus       431 ---------~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          431 ---------L--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             ---------H--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             ---------H--HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence                     0  0114467777775433  4433333332 366777777777777652 23345666777777777777


Q ss_pred             Cccc-CCcccccCCCCCEEeccCCccccc
Q 005168          573 LNGK-IPHQLVELKTLEVFSVAYNNLSGE  600 (710)
Q Consensus       573 i~~~-~~~~l~~l~~L~~L~l~~N~l~~~  600 (710)
                      ++.. ++.....+++|+.|++++|+++..
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            6532 333345567777777777776643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7.3e-26  Score=246.66  Aligned_cols=244  Identities=19%  Similarity=0.161  Sum_probs=164.4

Q ss_pred             CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168          255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL  334 (710)
Q Consensus       255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~  334 (710)
                      +|++|+|++|.+.+..|.+|.++++|++|+|++|.+++..|   +.++++|++|++++|.+..                +
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~----------------l   95 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE----------------L   95 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE----------------E
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC----------------C
Confidence            56666666666665555566666666666666666653222   3455566666555555432                1


Q ss_pred             cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168          335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI  414 (710)
Q Consensus       335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~  414 (710)
                      ...++|++|++++|.+.+..+.   .+++|+.|++++|.+.+                                    ..
T Consensus        96 ~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------------------------------------~~  136 (487)
T 3oja_A           96 LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------------------------LR  136 (487)
T ss_dssp             EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS------------------------------------GG
T ss_pred             CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC------------------------------------CC
Confidence            1124455555555544443332   12344444444444432                                    33


Q ss_pred             ChhhhcCCCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          415 PDWIGELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      |..++.+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++..+..+                           
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------------  189 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---------------------------  189 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---------------------------
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---------------------------
Confidence            44566678888888888888877777765 68888899998888876533221                           


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                        +++|+.|+|++|.+++..| .|..+++|+.|+|++|.++++ |..+..+++|+.|++++|++
T Consensus       190 ------------------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          190 ------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCB
T ss_pred             ------------------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCC
Confidence                              4588999999999986555 488899999999999999975 55688899999999999999


Q ss_pred             c-ccCCcccccCCCCCEEecc-------CCccccccCC
Q 005168          574 N-GKIPHQLVELKTLEVFSVA-------YNNLSGEILE  603 (710)
Q Consensus       574 ~-~~~~~~l~~l~~L~~L~l~-------~N~l~~~~~~  603 (710)
                      . +.+|..+..++.|+.++++       .|+..|.++.
T Consensus       250 ~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             CHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             cCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            8 5667778888888888886       7788777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.6e-26  Score=237.46  Aligned_cols=201  Identities=22%  Similarity=0.280  Sum_probs=118.0

Q ss_pred             CCccceeeCccCccccccchhh--cCCCCCCEEECCCCcCcccCCCCCC-C-----CCcceEEccCccccccccccCCCc
Q 005168          337 LTWLIHIIMPENHLEGPIPVEF--CQLYSLQILDISDNNISGSLPSCFH-P-----LSIEQVHLSKNMLHRQLKRDLSYN  408 (710)
Q Consensus       337 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~~~~~-~-----~~L~~L~l~~n~l~~~~~~~l~~n  408 (710)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.+.+. +..+. +     ++|++|++++|.+.+         
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~---------  163 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN---------  163 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC---------
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc---------
Confidence            4444444444444444444433  4444444444444444443 22222 1     444444443333321         


Q ss_pred             cCcccCChhhhcCCCccEEecCCCccccc--CCccc--CCCCCCCEEEccCCcccccC--C-CCcccccccccccCCCCC
Q 005168          409 LLNGSIPDWIGELSQLSHLILGHNNLEGE--VPVQL--CELNQLQLLDLSNNSLHGSI--P-PCFDNTTLYESYNNSSSL  481 (710)
Q Consensus       409 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~~~~~~~~~~  481 (710)
                          ..|..++.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++..  + ..+.              
T Consensus       164 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------  225 (312)
T 1wwl_A          164 ----FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--------------  225 (312)
T ss_dssp             ----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------
T ss_pred             ----chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--------------
Confidence                3345556667777777777776543  12223  66777777777777765211  1 1111              


Q ss_pred             ccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCC-ccccccCCCCEEeCCCccCCCCCchhhcCC
Q 005168          482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP-PQIGNLTRIQTLNLSYNNLTGLIPSTFSNL  560 (710)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  560 (710)
                                                   .+++|+.|++++|.+++..| ..+..+++|++|+|++|.++.+ |..+.  
T Consensus       226 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--  273 (312)
T 1wwl_A          226 -----------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--  273 (312)
T ss_dssp             -----------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred             -----------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence                                         13477778888887776664 4466678888888888888855 33343  


Q ss_pred             ccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168          561 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       561 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~  599 (710)
                      ++|++|++++|+|++. |. +..+++|+.|++++|++++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            7788888888888855 55 7778888888888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.2e-23  Score=211.33  Aligned_cols=142  Identities=25%  Similarity=0.286  Sum_probs=111.0

Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      ..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..                              
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------  131 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------  131 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------
Confidence            34555666666666666555555666667777777777666655555544                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                   +++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|++++..+
T Consensus       132 -------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          132 -------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence                         3367777777777776666778889999999999999999988899999999999999999998777


Q ss_pred             cccccCCCCCEEeccCCccccccCC
Q 005168          579 HQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       579 ~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      ..+..+++|+.|++++|+|.|.|..
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             HHhccccCCCEEEecCCCeeCCCcc
Confidence            7889999999999999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=7.5e-24  Score=214.55  Aligned_cols=181  Identities=24%  Similarity=0.246  Sum_probs=135.0

Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      .++.|++++|.+.+..+..|..+++|++|++++|.++++.+.                                      
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------   73 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------------------------------------   73 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------------------------------------
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------------------------------------
Confidence            444455555555545555566666666666666666533221                                      


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+                             
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-----------------------------  123 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-----------------------------  123 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-----------------------------
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-----------------------------
Confidence            23456667777777666 445566677777777777777776666666553                             


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                    ++|+.|+|++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++ .+|
T Consensus       124 --------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          124 --------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             --------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             --------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence                          37788888888888777778889999999999999999999889999999999999999999 677


Q ss_pred             cccccCCCCCEEeccCCccccccC
Q 005168          579 HQLVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       579 ~~l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      ..+...++|+.+++++|||.|.|.
T Consensus       189 ~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          189 KGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             hhhcccccCCeEEeCCCCccCcCc
Confidence            778888999999999999999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.5e-23  Score=211.41  Aligned_cols=228  Identities=26%  Similarity=0.284  Sum_probs=132.9

Q ss_pred             EEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCC
Q 005168          234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN  313 (710)
Q Consensus       234 L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n  313 (710)
                      ++-.+..++ .+|..+.   +++++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            444445555 5565442   36777777777776666656666777777777777666 555555555555555555555


Q ss_pred             CCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEcc
Q 005168          314 SLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS  393 (710)
Q Consensus       314 ~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~  393 (710)
                      .+.                                   +..+..|.++++|++|++++|.+.+..+.             
T Consensus        87 ~l~-----------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------  118 (276)
T 2z62_A           87 PIQ-----------------------------------SLALGAFSGLSSLQKLVAVETNLASLENF-------------  118 (276)
T ss_dssp             CCC-----------------------------------EECTTTTTTCTTCCEEECTTSCCCCSTTC-------------
T ss_pred             ccC-----------------------------------ccChhhhcCCccccEEECCCCCccccCch-------------
Confidence            443                                   33334444455555555555544432221             


Q ss_pred             CccccccccccCCCccCcccCChhhhcCCCccEEecCCCccccc-CCcccCCCCCCCEEEccCCcccccCCCCccccccc
Q 005168          394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE-VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY  472 (710)
Q Consensus       394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  472 (710)
                                             .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+.  
T Consensus       119 -----------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--  173 (276)
T 2z62_A          119 -----------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--  173 (276)
T ss_dssp             -----------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--
T ss_pred             -----------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh--
Confidence                                   122334445555555554432 244555555666666666655544444443321  


Q ss_pred             ccccCCCCCccccccceeecCCCcceeeccccceeccccccccc-EEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168          473 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS-GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG  551 (710)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  551 (710)
                                                            .++.+. .|++++|.+++..+..+.. .+|++|+|++|.+++
T Consensus       174 --------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          174 --------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS  214 (276)
T ss_dssp             --------------------------------------TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred             --------------------------------------hccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence                                                  011222 6677777776555555544 478899999999998


Q ss_pred             CCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          552 LIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       552 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                      +++..|..+++|++|++++|++.+..|
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            888888889999999999999986443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4.9e-23  Score=206.78  Aligned_cols=171  Identities=24%  Similarity=0.272  Sum_probs=154.4

Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      ..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..                        
T Consensus        52 ~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------  107 (270)
T 2o6q_A           52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ------------------------  107 (270)
T ss_dssp             CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT------------------------
T ss_pred             eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc------------------------
Confidence            33446777899999999999999777778899999999999999999777777765                        


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                                         +++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|+
T Consensus       108 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A          108 -------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             -------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence                               3489999999999999888899999999999999999999998899999999999999999


Q ss_pred             CcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +++..+..|..+++|+.|++++|++....+..+..+..++.+.+.+|||.|+|+
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            998888889999999999999999998777767888899999999999999975

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=2.9e-26  Score=258.32  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=81.9

Q ss_pred             CCCCCCEEEccCCcCcccCChhH---hhcCCCCcEEEccCCc--cccc-CccCccCCCCCCEEEcccC-cCcccCChhhh
Q 005168          178 HQHDLEYVRLSHIKMNGEFPNWL---LENNTKLATLFLVNDS--LAGP-FWLPIHSHKRLGILDISNN-NIRGHIPVEIG  250 (710)
Q Consensus       178 ~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~  250 (710)
                      .+++|++|++++|.+++..+..+   ...+++|++|++++|.  +... .......+++|++|++++| .+. .+|..+.
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~  232 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ  232 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence            45556666666555444332222   1244556666665554  1100 0111223456666666655 232 2333333


Q ss_pred             hcCCCccEEEccCCc-------CcccCCccCcCCCCCCEE-eccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeecc
Q 005168          251 DVLPSLYVFNISMNA-------LDGSIPSSFGNMKFLQLL-DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLT  322 (710)
Q Consensus       251 ~~~~~L~~L~L~~n~-------i~~~~~~~f~~l~~L~~L-~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~  322 (710)
                      . +++|++|++..+.       +.+ .+..+.++++|+.| .+.+.... .++... ..+++|++|++++|.+...    
T Consensus       233 ~-~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~-~~~~~L~~L~L~~~~l~~~----  304 (594)
T 2p1m_B          233 R-APQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVY-SVCSRLTTLNLSYATVQSY----  304 (594)
T ss_dssp             H-CTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGH-HHHTTCCEEECTTCCCCHH----
T ss_pred             c-CCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHH-HhhCCCCEEEccCCCCCHH----
Confidence            2 5566666644332       222 22245566666666 33332221 233222 2456666666666654320    


Q ss_pred             CccCccCcCccccCCCccceeeCccCccccc-cchhhcCCCCCCEEECCC
Q 005168          323 NNSLSGNIPGWLGNLTWLIHIIMPENHLEGP-IPVEFCQLYSLQILDISD  371 (710)
Q Consensus       323 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~  371 (710)
                            .....+..+++|++|++++| +... .+.....+++|++|++++
T Consensus       305 ------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          305 ------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             ------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             ------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence                  11222445666777777666 3322 122223466677776643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=3.5e-26  Score=257.64  Aligned_cols=413  Identities=12%  Similarity=0.073  Sum_probs=259.2

Q ss_pred             ccCCCCCcEEEccCCccccccccc-----------c-cCCCCCCcccEEEecCCCCCCCccChhcc-CCCCCCEEEccCC
Q 005168          124 LFNHSRLKIFHAKNNQMNAEITES-----------H-SLTAPNFQLQSLSLSSSYGDGVTFPKFLY-HQHDLEYVRLSHI  190 (710)
Q Consensus       124 l~~l~~L~~L~L~~n~~~~~~~~~-----------~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ls~~  190 (710)
                      +..+++|+.|+++++.........           + ......++|++|++ .++.+.+..+..+. .+++|++|++++|
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L-~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE-ESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe-eCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            455677777777776432111000           0 00112347888888 56666555555554 5788999999888


Q ss_pred             -cCcccCChhHhhcCCCCcEEEccCCcccccCccC----ccCCCCCCEEEcccCcCcccCCh----hhhhcCCCccEEEc
Q 005168          191 -KMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP----IHSHKRLGILDISNNNIRGHIPV----EIGDVLPSLYVFNI  261 (710)
Q Consensus       191 -~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~ls~n~i~~~~~~----~~~~~~~~L~~L~L  261 (710)
                       .++......+..++++|++|++++|.+.+..+..    ...+++|++|++++|. . .++.    .+...+++|++|++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L  218 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKL  218 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEec
Confidence             4544333344467889999999888876644333    3367789999998886 2 3332    22233688999999


Q ss_pred             cCC-cCcccCCccCcCCCCCCEEeccCCc-------cCCcCChhhhcCCCCCcEE-EccCCCCcCeeeccCccCccCcCc
Q 005168          262 SMN-ALDGSIPSSFGNMKFLQLLDLSNNQ-------LTGEIPEHLAVGCVNLQFL-MLSNNSLKEGLYLTNNSLSGNIPG  332 (710)
Q Consensus       262 ~~n-~i~~~~~~~f~~l~~L~~L~Ls~n~-------l~~~i~~~~~~~l~~L~~L-~Ls~n~l~~~l~l~~n~l~~~~~~  332 (710)
                      ++| .+.+ .+..+..+++|+.|+++.+.       +. .++. .+.++++|+.| .+.....            +.++.
T Consensus       219 ~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~------------~~l~~  283 (594)
T 2p1m_B          219 NRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP------------AYLPA  283 (594)
T ss_dssp             CTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG------------GGGGG
T ss_pred             CCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch------------hhHHH
Confidence            888 3443 56667788888888865443       33 3333 34578888887 3332211            12444


Q ss_pred             cccCCCccceeeCccCcccccc-chhhcCCCCCCEEECCCCcCcccC-CCCC-CCCCcceEEccCccccccccccCCCcc
Q 005168          333 WLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL-PSCF-HPLSIEQVHLSKNMLHRQLKRDLSYNL  409 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~-~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~  409 (710)
                      .+..+++|++|++++|.+++.. ...+..+++|++|++++| +.... +... .+++|++|+++++.-.+    ..+.+.
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g----~~~~~~  358 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV----MEPNVA  358 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----SSCSSC
T ss_pred             HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----cccCCC
Confidence            4557889999999999876443 233568899999999988 43211 1111 26789999885542110    112222


Q ss_pred             CcccCChhh-hcCCCccEEecCCCcccccCCcccC-CCCCCCEEEcc--C----CcccccCCC-CcccccccccccCCCC
Q 005168          410 LNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLS--N----NSLHGSIPP-CFDNTTLYESYNNSSS  480 (710)
Q Consensus       410 ~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-~~~~~~~~~~~~~~~~  480 (710)
                      +++.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|+++  +    +.+++...+ .+..            
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~------------  426 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA------------  426 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH------------
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH------------
Confidence            322222223 3478999999888888765544454 58899999998  3    333311100 0000            


Q ss_pred             CccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc-cCCCCEEeCCCccCCCCCchhh-c
Q 005168          481 LDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN-LTRIQTLNLSYNNLTGLIPSTF-S  558 (710)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~  558 (710)
                                                 ....+++|+.|++++ .+++.....+.. +++|+.|+|++|.+++.....+ .
T Consensus       427 ---------------------------l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~  478 (594)
T 2p1m_B          427 ---------------------------IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS  478 (594)
T ss_dssp             ---------------------------HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred             ---------------------------HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence                                       012356899999977 666544445554 7899999999999876555444 6


Q ss_pred             CCccCCEEeCcCCcCcccCCc-ccccCCCCCEEeccCCcccc
Q 005168          559 NLKHIESLDLSYNKLNGKIPH-QLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       559 ~l~~L~~L~Ls~N~i~~~~~~-~l~~l~~L~~L~l~~N~l~~  599 (710)
                      ++++|++|+|++|+++..... ....+++|+.|++++|+++.
T Consensus       479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            689999999999998643333 34558899999999998854

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=6.6e-23  Score=207.62  Aligned_cols=206  Identities=25%  Similarity=0.258  Sum_probs=163.0

Q ss_pred             cCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC
Q 005168          359 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV  438 (710)
Q Consensus       359 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  438 (710)
                      ..++++++++++++.++.+++..  +..++.|++++|.+++             ..+..|..+++|++|++++|.+++..
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~   71 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYT-------------FSLATLMPYTRLTQLNLDRAELTKLQ   71 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSE-------------EEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred             cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCc-------------cCHHHhhcCCCCCEEECCCCccCccc
Confidence            33444445555554444433322  1344555444443332             44566788899999999999998654


Q ss_pred             CcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEE
Q 005168          439 PVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL  518 (710)
Q Consensus       439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  518 (710)
                      +.  ..+++|++|++++|.+. .+|..+..                                           +++|+.|
T Consensus        72 ~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------------l~~L~~L  105 (290)
T 1p9a_G           72 VD--GTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------------LPALTVL  105 (290)
T ss_dssp             CC--SCCTTCCEEECCSSCCS-SCCCCTTT-------------------------------------------CTTCCEE
T ss_pred             CC--CCCCcCCEEECCCCcCC-cCchhhcc-------------------------------------------CCCCCEE
Confidence            43  78999999999999997 45555544                                           4589999


Q ss_pred             ECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       519 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      ++++|++++..+..|.++++|++|+|++|++++++++.|..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            99999999888899999999999999999999999999999999999999999999777778899999999999999999


Q ss_pred             cccCCCccccccCCcccccCCCCCCCCC
Q 005168          599 GEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                       .+|.++.....+..+.+.+|||.|+|.
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             -ccChhhcccccCCeEEeCCCCccCcCc
Confidence             456666677788899999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.2e-22  Score=198.55  Aligned_cols=146  Identities=26%  Similarity=0.312  Sum_probs=131.8

Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      ..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..                        
T Consensus        50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------  105 (251)
T 3m19_A           50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH------------------------  105 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------------
T ss_pred             cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc------------------------
Confidence            44456777889999999999999888888999999999999999999777777765                        


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                                         +++|+.|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++|+
T Consensus       106 -------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          106 -------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence                               3489999999999998888889999999999999999999999899999999999999999


Q ss_pred             CcccCCcccccCCCCCEEeccCCcccccc
Q 005168          573 LNGKIPHQLVELKTLEVFSVAYNNLSGEI  601 (710)
Q Consensus       573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~  601 (710)
                      +++..+..+..+++|+.|++++|++.|.+
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            99888889999999999999999999983

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.7e-22  Score=201.52  Aligned_cols=141  Identities=25%  Similarity=0.288  Sum_probs=98.7

Q ss_pred             hhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168          418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD  497 (710)
Q Consensus       418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (710)
                      +..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..                             
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------------  155 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-----------------------------  155 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------------
Confidence            344555666666666665555555666666666666666666555544444                             


Q ss_pred             eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccC
Q 005168          498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  577 (710)
Q Consensus       498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~  577 (710)
                                    +++|+.|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|+.|++++|++.+. 
T Consensus       156 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-  220 (272)
T 3rfs_A          156 --------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-  220 (272)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred             --------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence                          23666777777777766666677888888888888888888888888888888888888887754 


Q ss_pred             CcccccCCCCCEEeccCCccccccCCCcccc
Q 005168          578 PHQLVELKTLEVFSVAYNNLSGEILEWTAQF  608 (710)
Q Consensus       578 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  608 (710)
                            ++.|+.+++..|.+++.+|.++..+
T Consensus       221 ------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          221 ------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             ------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             ------CcHHHHHHHHHHhCCCcccCccccc
Confidence                  3467888888888888888765543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=7.5e-22  Score=198.29  Aligned_cols=144  Identities=27%  Similarity=0.285  Sum_probs=133.0

Q ss_pred             hhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCc
Q 005168          417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG  496 (710)
Q Consensus       417 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (710)
                      .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+                           
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------------  132 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL---------------------------  132 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------------------------
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC---------------------------
Confidence            46678899999999999998888889999999999999999998877777664                           


Q ss_pred             ceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168          497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  576 (710)
Q Consensus       497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~  576 (710)
                                      ++|+.|++++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|++++.
T Consensus       133 ----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          133 ----------------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             ----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ----------------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence                            4899999999999988888899999999999999999999999999999999999999999988


Q ss_pred             CCcccccCCCCCEEeccCCccccccCC
Q 005168          577 IPHQLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       577 ~~~~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      .+..+..+++|+.|++++|++.|.+|.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHHHHhCCcCCCEEEccCCCccccCcH
Confidence            888899999999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.2e-21  Score=193.00  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=39.5

Q ss_pred             CcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCc-cCCcCChhhhcCCCCCcEEEccC
Q 005168          241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ-LTGEIPEHLAVGCVNLQFLMLSN  312 (710)
Q Consensus       241 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~Ls~  312 (710)
                      ++ .+|. +   .+++++|++++|+++++.+.+|.++++|++|++++|+ ++ .++...|.++++|++|++++
T Consensus        23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEE
T ss_pred             cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCC
Confidence            44 5565 2   2366677777776666665566666666666666665 55 55555555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.4e-23  Score=215.30  Aligned_cols=182  Identities=20%  Similarity=0.183  Sum_probs=92.5

Q ss_pred             EEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCC----ccCcCCC-CCCEEeccCCccCCcCChhhhcCC-----C
Q 005168          234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIP----SSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGC-----V  303 (710)
Q Consensus       234 L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~f~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l-----~  303 (710)
                      ++++.|.+++.+|.... ..++|++|++++|.+.+..+    .+|.+++ +|++|++++|.+. ......+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCC
Confidence            45666666654444332 24457777777777665554    5566666 6777777777666 3322222222     5


Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCc----cccCC-CccceeeCccCccccccchhhc----C-CCCCCEEECCCCc
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPG----WLGNL-TWLIHIIMPENHLEGPIPVEFC----Q-LYSLQILDISDNN  373 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~----~~~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~ls~n~  373 (710)
                      +|++|++++|.+..           ..+.    .+..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.
T Consensus        81 ~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           81 NVTSLNLSGNFLSY-----------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             TCCEEECCSSCGGG-----------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             CccEEECcCCcCCh-----------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            66666665555442           1222    12233 4555555555555544433322    1 1355555555554


Q ss_pred             CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC-CccEEecCCCcccccCCcc----cCCC-CC
Q 005168          374 ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS-QLSHLILGHNNLEGEVPVQ----LCEL-NQ  447 (710)
Q Consensus       374 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~  447 (710)
                      +.+....                                .++..+..++ +|++|+|++|++++..+..    +..+ ++
T Consensus       150 l~~~~~~--------------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~  197 (362)
T 3goz_A          150 LGIKSSD--------------------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS  197 (362)
T ss_dssp             GGGSCHH--------------------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred             CCHHHHH--------------------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCC
Confidence            4421110                                2223334444 6777777777666544432    2333 46


Q ss_pred             CCEEEccCCcccc
Q 005168          448 LQLLDLSNNSLHG  460 (710)
Q Consensus       448 L~~L~L~~n~l~~  460 (710)
                      |++|++++|.+++
T Consensus       198 L~~L~Ls~N~i~~  210 (362)
T 3goz_A          198 VTSLDLSANLLGL  210 (362)
T ss_dssp             CCEEECTTSCGGG
T ss_pred             CCEEECCCCCCCh
Confidence            7777777776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=5.8e-21  Score=199.32  Aligned_cols=203  Identities=19%  Similarity=0.184  Sum_probs=140.9

Q ss_pred             CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEE-Ec
Q 005168          232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL-ML  310 (710)
Q Consensus       232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L-~L  310 (710)
                      ++++-++++++ .+|..+.   +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.++++++++ .+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888888 8887663   5899999999999987778899999999999999998767888888888887764 33


Q ss_pred             cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCC-CcCcccCCCCCC--CCCc
Q 005168          311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD-NNISGSLPSCFH--PLSI  387 (710)
Q Consensus       311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~--~~~L  387 (710)
                      +.|.           ++++.+..|..+++|++|++++|++....+..+....++..+++.+ +.+..+.+..|.  ...+
T Consensus        88 ~~N~-----------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           88 KANN-----------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             EETT-----------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cCCc-----------ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            3444           4446678888899999999999988877777777777888888865 567666666554  2345


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCC
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP  463 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  463 (710)
                      +.|++++|.++.             +.+..| ...+|+++++++ |.++.+.+++|.++++|++||+++|+++..++
T Consensus       157 ~~L~L~~N~i~~-------------i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          157 VILWLNKNGIQE-------------IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             EEEECCSSCCCE-------------ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             hhhccccccccC-------------CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            556555554442             112222 234566666653 45554444556666666666666666654333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.1e-23  Score=220.03  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=58.7

Q ss_pred             cccEEECcCCcCC----CCCCccccccCCCCEEeCCCccCCCC----CchhhcC--CccCCEEeCcCCcCcc----cCCc
Q 005168          514 LLSGLYLSCNKLI----GHIPPQIGNLTRIQTLNLSYNNLTGL----IPSTFSN--LKHIESLDLSYNKLNG----KIPH  579 (710)
Q Consensus       514 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~i~~----~~~~  579 (710)
                      +|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    .+..+..  +++|++|+|++|+++.    .+|.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            5555555555553    34455666777777777777777755    3445533  7778888888887775    3666


Q ss_pred             cc-ccCCCCCEEeccCCcccccc
Q 005168          580 QL-VELKTLEVFSVAYNNLSGEI  601 (710)
Q Consensus       580 ~l-~~l~~L~~L~l~~N~l~~~~  601 (710)
                      .+ ..+++|+.|++++|++++..
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhcCCCceEEEccCCcCCcch
Confidence            55 55778888888888877655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5e-21  Score=188.49  Aligned_cols=197  Identities=22%  Similarity=0.219  Sum_probs=124.8

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc-CcccCCccCcCCCCCCEEeccC-CccCCcCChhhhcCCCCCcE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA-LDGSIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~  307 (710)
                      ++++|++++|+++ .+|...+..+++|++|++++|. ++.+.+.+|.++++|++|++++ |.++ .++...|.++++|++
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            5566666666665 4444333345666666666664 5555555666666666666666 6665 556555556666666


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccc---eeeCccC-ccccccchhhcCCCCCC-EEECCCCcCcccCCCCC
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI---HIIMPEN-HLEGPIPVEFCQLYSLQ-ILDISDNNISGSLPSCF  382 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~i~~~~~~~~  382 (710)
                      |++++|.+..            +|. |..+++|+   +|++++| .+.+..+..|.++++|+ +|++++|.+..+++..+
T Consensus       110 L~l~~n~l~~------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          110 LGIFNTGLKM------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             EEEEEECCCS------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             EeCCCCCCcc------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            6666555542            233 55555555   7777777 66666666677777777 77777777776666666


Q ss_pred             CCCCcceEEccCcc-ccccccccCCCccCcccCChhhhcC-CCccEEecCCCcccccCCcccCCCCCCCEEEccCCc
Q 005168          383 HPLSIEQVHLSKNM-LHRQLKRDLSYNLLNGSIPDWIGEL-SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS  457 (710)
Q Consensus       383 ~~~~L~~L~l~~n~-l~~~~~~~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  457 (710)
                      ...+|++|++++|+ ++.             ..+..|.++ ++|++|++++|++++..+.   .+++|+.|+++++.
T Consensus       177 ~~~~L~~L~L~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCEEEEEECTTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCCCEEEcCCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            55667777665553 432             445567777 8888889988888854443   56788888887763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=9.2e-21  Score=197.77  Aligned_cols=242  Identities=22%  Similarity=0.154  Sum_probs=174.0

Q ss_pred             cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168          257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN  336 (710)
Q Consensus       257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~  336 (710)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+ .+|..+|.++++|++|+|++|.+.+.          +.+.+|.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~----------i~~~~f~~   77 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSN   77 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCE----------ECTTSBCS
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCc----------cChhHhhc
Confidence            56777888888 445544  367889999999998 88888888889999988888876541          23456788


Q ss_pred             CCccce-eeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          337 LTWLIH-IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       337 l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      ++++++ +.+..|++..+.+..|..+++|++|++++|.+....+..+                                 
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------  124 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK---------------------------------  124 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT---------------------------------
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh---------------------------------
Confidence            887765 4556678887778888888888888888888875544332                                 


Q ss_pred             hhhhcCCCccEEecCC-CcccccCCcccCCCC-CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELN-QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                         ....++..+++.+ +.+....+.+|..+. .++.|++++|+++.+.+..|..                         
T Consensus       125 ---~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-------------------------  176 (350)
T 4ay9_X          125 ---IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-------------------------  176 (350)
T ss_dssp             ---CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-------------------------
T ss_pred             ---cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-------------------------
Confidence               2234556666644 456655555666654 5888889988888666655533                         


Q ss_pred             CCcceeeccccceecccccccccEEECc-CCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLS-CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                                         ..++.|+++ +|.++.+.+.+|.++++|++|+|++|+|+.+++..|.+   |+.|.+.++.
T Consensus       177 -------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~  234 (350)
T 4ay9_X          177 -------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTY  234 (350)
T ss_dssp             -------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCT
T ss_pred             -------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCC
Confidence                               258888887 46777666678999999999999999999888776654   4555554444


Q ss_pred             CcccCCcccccCCCCCEEeccCCc
Q 005168          573 LNGKIPHQLVELKTLEVFSVAYNN  596 (710)
Q Consensus       573 i~~~~~~~l~~l~~L~~L~l~~N~  596 (710)
                      -...+|. +..+++|+.+++.++.
T Consensus       235 ~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          235 NLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             CcCcCCC-chhCcChhhCcCCCCc
Confidence            3336663 7889999999997543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.2e-20  Score=185.19  Aligned_cols=160  Identities=24%  Similarity=0.287  Sum_probs=149.3

Q ss_pred             CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168          422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK  501 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (710)
                      ++++.|++++|.+.+..+.+|.++++|++|++++|.+++..+..|..+                                
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------------   82 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--------------------------------   82 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC--------------------------------
Confidence            589999999999998888899999999999999999998888777664                                


Q ss_pred             cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                                 ++|+.|++++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..+
T Consensus        83 -----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  151 (251)
T 3m19_A           83 -----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF  151 (251)
T ss_dssp             -----------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             -----------CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence                       489999999999998888899999999999999999999999999999999999999999998888789


Q ss_pred             ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168          582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG  624 (710)
Q Consensus       582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~  624 (710)
                      ..+++|+.|++++|.+....+..+..+..++.+.+.+|++.|+
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999999999988887788889999999999999998

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=193.05  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168          257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN  336 (710)
Q Consensus       257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~  336 (710)
                      ..+.+..+.+.+..  .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+..            .+. +..
T Consensus        22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~------------~~~-~~~   83 (308)
T 1h6u_A           22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITD------------LAP-LKN   83 (308)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC------------CGG-GTT
T ss_pred             HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCC------------Chh-Hcc
Confidence            33344555544332  2345666777777777766 5552  3356666666666665542            122 555


Q ss_pred             CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168          337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS  375 (710)
Q Consensus       337 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~  375 (710)
                      +++|++|++++|.+.+.  ..+..+++|++|++++|.+.
T Consensus        84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCC
Confidence            55555555555555432  13444555555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=8.1e-21  Score=194.75  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             CCCEEEcccCcCcccCChhh--hhcCCCccEEEccCCcCcccCCccC--cCCCCCCEEeccCCccCCcCCh---hhhcCC
Q 005168          230 RLGILDISNNNIRGHIPVEI--GDVLPSLYVFNISMNALDGSIPSSF--GNMKFLQLLDLSNNQLTGEIPE---HLAVGC  302 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~~~f--~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l  302 (710)
                      .++.+.+.++.++...-..+  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.   ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46677777666542110011  1114568888888888887777776  7788888888888887743331   112244


Q ss_pred             CCCcEEEccCCCC
Q 005168          303 VNLQFLMLSNNSL  315 (710)
Q Consensus       303 ~~L~~L~Ls~n~l  315 (710)
                      ++|++|++++|.+
T Consensus       145 ~~L~~L~Ls~n~l  157 (310)
T 4glp_A          145 PGLKVLSIAQAHS  157 (310)
T ss_dssp             SCCCEEEEECCSS
T ss_pred             cCCCEEEeeCCCc
Confidence            5555555444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=6.8e-21  Score=184.45  Aligned_cols=177  Identities=22%  Similarity=0.302  Sum_probs=144.8

Q ss_pred             CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168          422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK  501 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (710)
                      ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++.                               
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-------------------------------   80 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-------------------------------   80 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-------------------------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-------------------------------
Confidence            5789999999999988888899999999999999999988888887644                               


Q ss_pred             cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                                  +|+.|+|++|.+++..+..|.++++|++|+|++|+++++.++.|..+++|+.|+|++|+|++..++.+
T Consensus        81 ------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           81 ------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             ------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence                        89999999999998888889999999999999999999999999999999999999999998888889


Q ss_pred             ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168          582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL  649 (710)
Q Consensus       582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  649 (710)
                      ..+++|+.|++++|+|.|.|.-  .++..+.    ..++..-  ....|..|...++..+.....+..
T Consensus       149 ~~l~~L~~L~L~~N~~~c~c~l--~~l~~~l----~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~~  208 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFICDCHL--KWLADYL----HTNPIET--SGARCTSPRRLANKRIGQIKSKKF  208 (220)
T ss_dssp             TTCTTCCEEECCSSCEECSGGG--HHHHHHH----HHCCCBC--SCCBEEESGGGTTCBGGGSCGGGC
T ss_pred             hCCCCCCEEEeCCCCcCCCCcc--HHHHHHH----HhCCCCc--cCCCcCCchHHcCCchhhCCHHHC
Confidence            9999999999999999998852  2322211    1111110  112578888877776665555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=9.3e-21  Score=194.31  Aligned_cols=226  Identities=18%  Similarity=0.145  Sum_probs=149.2

Q ss_pred             CCCCEEEccCCcCcccCChhH--hhcCCCCcEEEccCCcccccCccCc--cCCCCCCEEEcccCcCcccCC----hhhhh
Q 005168          180 HDLEYVRLSHIKMNGEFPNWL--LENNTKLATLFLVNDSLAGPFWLPI--HSHKRLGILDISNNNIRGHIP----VEIGD  251 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~~----~~~~~  251 (710)
                      ..++.+.+.++.++......+  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            457888888777654221111  1245779999999999888888777  888899999999998885444    2222 


Q ss_pred             cCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc--CC-hhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168          252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE--IP-EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG  328 (710)
Q Consensus       252 ~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~--i~-~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~  328 (710)
                      .+++|++|++++|.+.+..+..|.++++|++|++++|++.+.  ++ ...+..+++|++|++++|.+..           
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------  211 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----------  211 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------
Confidence            477888888888888877778888888888888888887532  22 1222456677777776666542           


Q ss_pred             CcCc----cccCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccc
Q 005168          329 NIPG----WLGNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQL  401 (710)
Q Consensus       329 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~  401 (710)
                       .+.    .++.+++|++|++++|.+.+..|..+..+   ++|++|++++|+++.+                        
T Consensus       212 -l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l------------------------  266 (310)
T 4glp_A          212 -PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV------------------------  266 (310)
T ss_dssp             -HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC------------------------
T ss_pred             -hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch------------------------
Confidence             111    23556666666666666666555555444   4666666666665532                        


Q ss_pred             cccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168          402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       402 ~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  459 (710)
                                   |..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       267 -------------p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          267 -------------PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -------------CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             -------------hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence                         22221  5777777777777754 32 566778888888888775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.5e-21  Score=202.99  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=74.8

Q ss_pred             CCCEEEcccCcCcccCChhhhhcC--CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVL--PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      .++.++++++.+.   |..+.. +  ++++.|++++|.+.+..+. +..+++|++|++++|.+++......+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3667777777665   233322 3  6777788877777765554 4457777777777777653312233445666666


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccC-ccccc-cchhhcCCCCCCEEECCCC-cCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN-HLEGP-IPVEFCQLYSLQILDISDN-NIS  375 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n-~i~  375 (710)
                      |++++|.+..           ..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .++
T Consensus       123 L~L~~~~l~~-----------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          123 LSLEGLRLSD-----------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             EECTTCBCCH-----------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             EeCcCcccCH-----------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            6666655432           33444555666666666665 34432 3444555556666665555 443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.1e-22  Score=207.29  Aligned_cols=254  Identities=16%  Similarity=0.165  Sum_probs=165.1

Q ss_pred             CccEEEccCCcCcccCCccCcCC--CCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccC-cC
Q 005168          255 SLYVFNISMNALDGSIPSSFGNM--KFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN-IP  331 (710)
Q Consensus       255 ~L~~L~L~~n~i~~~~~~~f~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~-~~  331 (710)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+. +...+ .+++|++|++++|.+..           . .+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~-~~~~L~~L~L~~~~l~~-----------~~~~  111 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAEHF-SPFRVQHMDLSNSVIEV-----------STLH  111 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCSCC-CCBCCCEEECTTCEECH-----------HHHH
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-chhhc-cCCCCCEEEccCCCcCH-----------HHHH
Confidence            4677777777665   3445555  6777777777777733 33343 56777777777665442           2 44


Q ss_pred             ccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC-cCcccCCCCCCCCCcceEEccCccccccccccCCCccC
Q 005168          332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN-NISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLL  410 (710)
Q Consensus       332 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~  410 (710)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++.                                 
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------------------  158 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------------------  158 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------------------
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------------------
Confidence            55667777777777777776666666777777777777776 34321                                 


Q ss_pred             cccCChhhhcCCCccEEecCCC-ccccc-CCcccCCCC-CCCEEEccCCc--cc-ccCCCCcccccccccccCCCCCccc
Q 005168          411 NGSIPDWIGELSQLSHLILGHN-NLEGE-VPVQLCELN-QLQLLDLSNNS--LH-GSIPPCFDNTTLYESYNNSSSLDEK  484 (710)
Q Consensus       411 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~  484 (710)
                        .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.  ++ +.+|..+.                 
T Consensus       159 --~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-----------------  219 (336)
T 2ast_B          159 --ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-----------------  219 (336)
T ss_dssp             --HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------------
T ss_pred             --HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------------
Confidence              13344566778888888888 77643 455567777 88888888884  33 12222221                 


Q ss_pred             cccceeecCCCcceeeccccceecccccccccEEECcCCc-CCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCCcc
Q 005168          485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNK-LIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKH  562 (710)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  562 (710)
                                                .+++|+.|++++|. +++..+..+..+++|++|++++|. ++......+..+++
T Consensus       220 --------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          220 --------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             --------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             --------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence                                      14578888888887 666667778888888888888885 32222225777888


Q ss_pred             CCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCCCcc
Q 005168          563 IESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILEWTA  606 (710)
Q Consensus       563 L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~  606 (710)
                      |++|++++| +.   ++.+..+ .+++.|++++|.+++..|.++.
T Consensus       274 L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          274 LKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence            888888888 33   2233333 2366666888888887776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=5.5e-22  Score=208.19  Aligned_cols=258  Identities=17%  Similarity=0.170  Sum_probs=123.4

Q ss_pred             CCCCCCCccChhccCCCCCCEEEccCCcCcccCC----hhHhhcCC-CCcEEEccCCcccccCccCccCC-----CCCCE
Q 005168          164 SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP----NWLLENNT-KLATLFLVNDSLAGPFWLPIHSH-----KRLGI  233 (710)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~----~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~  233 (710)
                      +.+.+.+.+|..+...++|++|++++|.+++..+    ..+ ..++ +|++|++++|.+.+..+..+..+     ++|++
T Consensus         6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF-ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH-HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            4444555555555555556666666666554443    222 3444 56666666665555444443332     55555


Q ss_pred             EEcccCcCcccCChhhhhc---C-CCccEEEccCCcCcccCCccC----cC-CCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168          234 LDISNNNIRGHIPVEIGDV---L-PSLYVFNISMNALDGSIPSSF----GN-MKFLQLLDLSNNQLTGEIPEHLAVGCVN  304 (710)
Q Consensus       234 L~ls~n~i~~~~~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~f----~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  304 (710)
                      |++++|.+++..+..+...   + ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+.....       
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------  157 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE-------  157 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-------
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-------
Confidence            5555555553333322221   1 455555555555554333222    22 235555555555554211111       


Q ss_pred             CcEEEccCCCCcCeeeccCccCccCcCccccCCC-ccceeeCccCccccccchhh----cCC-CCCCEEECCCCcCcccC
Q 005168          305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT-WLIHIIMPENHLEGPIPVEF----CQL-YSLQILDISDNNISGSL  378 (710)
Q Consensus       305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~ls~n~i~~~~  378 (710)
                                               ++..+..++ +|++|++++|.+++..+..+    ... ++|++|++++|.+.+..
T Consensus       158 -------------------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          158 -------------------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             -------------------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             -------------------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence                                     112222332 44444444444443333222    222 24555555555444311


Q ss_pred             C----CCC-C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC-------CcccCCC
Q 005168          379 P----SCF-H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV-------PVQLCEL  445 (710)
Q Consensus       379 ~----~~~-~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l  445 (710)
                      .    ..+ . +++|++|++++|.++.....         .+...+..+++|++|++++|.+.+..       +..+..+
T Consensus       213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l  283 (362)
T 3goz_A          213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI  283 (362)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCcHHHH---------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence            1    111 1 22455554444443321100         11233455678888888888854332       3356778


Q ss_pred             CCCCEEEccCCcccccCC
Q 005168          446 NQLQLLDLSNNSLHGSIP  463 (710)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~  463 (710)
                      ++|+.||+++|++.+..+
T Consensus       284 ~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          284 QKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CEEEEECTTSCBCCGGGC
T ss_pred             CceEEEecCCCcCCCcch
Confidence            889999999998875533

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=182.16  Aligned_cols=173  Identities=20%  Similarity=0.278  Sum_probs=138.6

Q ss_pred             CCccEEecCCCcccccCC-cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          422 SQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+.                              
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------------------------------   81 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------------------------   81 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT------------------------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC------------------------------
Confidence            356788889988887644 4578899999999999999887777776644                              


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ  580 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  580 (710)
                                   +|+.|+|++|.+++..+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|+|++..|..
T Consensus        82 -------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           82 -------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             -------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             -------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence                         8999999999999888888999999999999999999999999999999999999999999988999


Q ss_pred             cccCCCCCEEeccCCccccccCC-CccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168          581 LVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERD  646 (710)
Q Consensus       581 l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  646 (710)
                      |..+++|+.|++++|+|.|.|+. |+..+..... ...+++        .|..|...++..+.....
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~--------~C~~P~~l~g~~l~~l~~  206 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKR-IVTGNP--------RCQKPYFLKEIPIQDVAI  206 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------EEEESGGGTTEEGGGSCG
T ss_pred             hcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcC-ccccCC--------ccCCChHHCCCChhhCCH
Confidence            99999999999999999999863 2222211111 112332        477777666665544433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=3.1e-20  Score=189.90  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168          253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG  332 (710)
Q Consensus       253 ~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~  332 (710)
                      +++|++|++++|.+... + .+..+++|++|++++|.++ .++.  +.++++|++|++++|.+..            . .
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~------------~-~  101 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN------------V-S  101 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC------------C-G
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC------------c-h
Confidence            45677777777776643 2 4666777777777777776 4554  4467777777776666553            1 2


Q ss_pred             cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168          333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS  375 (710)
Q Consensus       333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~  375 (710)
                      .+..+++|++|++++|.+.+..  .+..+++|++|++++|.+.
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC
Confidence            4666777777777777766532  2666666666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=3.5e-21  Score=204.17  Aligned_cols=252  Identities=15%  Similarity=0.153  Sum_probs=147.8

Q ss_pred             cChhccCCCCCCEEEccCCcCcccCChhH---hhcCCCCcEEEccCCcc---cccCccCc-------cCCCCCCEEEccc
Q 005168          172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWL---LENNTKLATLFLVNDSL---AGPFWLPI-------HSHKRLGILDISN  238 (710)
Q Consensus       172 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~~~~L~~L~ls~  238 (710)
                      ++..+..+++|++|++++|.+++..+..+   +..+++|++|++++|.+   .+..|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44555566777777777777665443332   23566777777766533   23333332       5667777777777


Q ss_pred             CcCcc----cCChhhhhcCCCccEEEccCCcCcccCCccCc----CC---------CCCCEEeccCCccC-CcCCh--hh
Q 005168          239 NNIRG----HIPVEIGDVLPSLYVFNISMNALDGSIPSSFG----NM---------KFLQLLDLSNNQLT-GEIPE--HL  298 (710)
Q Consensus       239 n~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~----~l---------~~L~~L~Ls~n~l~-~~i~~--~~  298 (710)
                      |.+++    .+|..+.. +++|++|+|++|.+....+..+.    .+         ++|++|++++|++. ..++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            77663    23434433 56777777777766543332222    22         66777777777665 22232  23


Q ss_pred             hcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccc----cccchhhcCCCCCCEEECCCCcC
Q 005168          299 AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE----GPIPVEFCQLYSLQILDISDNNI  374 (710)
Q Consensus       299 ~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ls~n~i  374 (710)
                      +..+++|++|++++|.+...      .+....+..+..+++|++|+|++|.++    ..++..+..+++|++|++++|.+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPE------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHH------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHhCCCcCEEECcCCCCCHh------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            34566777776666655410      000012225566666777777666664    34555666666666666666665


Q ss_pred             cccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhc--CCCccEEecCCCcccc----cCCccc-CCCCC
Q 005168          375 SGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE--LSQLSHLILGHNNLEG----EVPVQL-CELNQ  447 (710)
Q Consensus       375 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~  447 (710)
                      .+....                                .++.++..  +++|++|+|++|.+++    .+|..+ .++++
T Consensus       257 ~~~~~~--------------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          257 SARGAA--------------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             CHHHHH--------------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             chhhHH--------------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence            532100                                23444533  7889999999998886    355555 56889


Q ss_pred             CCEEEccCCcccccC
Q 005168          448 LQLLDLSNNSLHGSI  462 (710)
Q Consensus       448 L~~L~L~~n~l~~~~  462 (710)
                      |++|++++|++++..
T Consensus       305 L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          305 LLFLELNGNRFSEED  319 (386)
T ss_dssp             CCEEECTTSBSCTTS
T ss_pred             ceEEEccCCcCCcch
Confidence            999999999887554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.8e-19  Score=170.90  Aligned_cols=147  Identities=22%  Similarity=0.287  Sum_probs=79.3

Q ss_pred             EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168          233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN  312 (710)
Q Consensus       233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  312 (710)
                      .++.+++.++ .+|..+   .+++++|++++|.++++.+..|.++++|++|++++|+++ .++...|.++++|++|++++
T Consensus        11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            4455555554 445433   235566666666655555555555666666666666665 55555555556666665555


Q ss_pred             CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEE
Q 005168          313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVH  391 (710)
Q Consensus       313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~  391 (710)
                      |.+..           ..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+. +++|+.|+
T Consensus        86 n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           86 NQLQS-----------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             SCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCc-----------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            54442           3334455556666666666666555555556666666666666665554444333 34444444


Q ss_pred             ccCc
Q 005168          392 LSKN  395 (710)
Q Consensus       392 l~~n  395 (710)
                      +++|
T Consensus       155 l~~N  158 (208)
T 2o6s_A          155 LHDN  158 (208)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            4444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.2e-19  Score=186.86  Aligned_cols=145  Identities=26%  Similarity=0.308  Sum_probs=123.0

Q ss_pred             Chhhh-cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          415 PDWIG-ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       415 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      +.++. .+++|++|+|++|++++..+.+|..+++|++|+|++|.+++..+..|..+                        
T Consensus        56 ~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------  111 (361)
T 2xot_A           56 AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL------------------------  111 (361)
T ss_dssp             TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC------------------------
T ss_pred             hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC------------------------
Confidence            33444 67889999999999988888888999999999999999987777777663                        


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhh---cCCccCCEEeCcC
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTF---SNLKHIESLDLSY  570 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~  570 (710)
                                         ++|+.|+|++|.+++..+..|.++++|++|+|++|.++++++..|   ..+++|+.|+|++
T Consensus       112 -------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          112 -------------------QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             -------------------cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence                               489999999999998888899999999999999999999888877   5689999999999


Q ss_pred             CcCcccCCcccccCCC--CCEEeccCCccccccC
Q 005168          571 NKLNGKIPHQLVELKT--LEVFSVAYNNLSGEIL  602 (710)
Q Consensus       571 N~i~~~~~~~l~~l~~--L~~L~l~~N~l~~~~~  602 (710)
                      |+|+...+..+..++.  ++.|++++|+|.|+|.
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            9999777678888877  4889999999999884

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=9.2e-19  Score=169.42  Aligned_cols=157  Identities=22%  Similarity=0.264  Sum_probs=142.2

Q ss_pred             cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecccc
Q 005168          425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA  504 (710)
Q Consensus       425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (710)
                      +.++++++.++. +|..+.  ++++.|++++|.+++..+..|..+                                   
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l-----------------------------------   55 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPY-----------------------------------   55 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTC-----------------------------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCC-----------------------------------
Confidence            678889998884 454443  689999999999998888777664                                   


Q ss_pred             ceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC
Q 005168          505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  584 (710)
Q Consensus       505 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l  584 (710)
                              ++|+.|+|++|.+++..|..|.++++|++|+|++|.++.+++..|.++++|++|+|++|+|++..|+.|..+
T Consensus        56 --------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  127 (220)
T 2v9t_B           56 --------KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL  127 (220)
T ss_dssp             --------TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             --------CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence                    489999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             CCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          585 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       585 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      ++|+.|++++|.++...+..+..+..++.+.+.+|++.|+|++
T Consensus       128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            9999999999999998887788888999999999999999764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.5e-18  Score=166.73  Aligned_cols=142  Identities=26%  Similarity=0.299  Sum_probs=103.7

Q ss_pred             hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168          416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ  495 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (710)
                      ..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..                           
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------   98 (208)
T 2o6s_A           46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------------------------   98 (208)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------
T ss_pred             hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------------------------
Confidence            34556677777777777777666666777778888888888777665555554                           


Q ss_pred             cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                      +++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|++.+
T Consensus        99 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           99 ----------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             ----------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence                            3377778888887777666667778888888888888887777777778888888888887664


Q ss_pred             cCCcccccCCCCCEEeccCCccccccCCCccc
Q 005168          576 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQ  607 (710)
Q Consensus       576 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  607 (710)
                             .++.|+.|+++.|.+++.+|.++..
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             -------CCCCHHHHHHHHHhCCceeeccCcc
Confidence                   3456777788888888877776544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5.2e-19  Score=185.20  Aligned_cols=162  Identities=23%  Similarity=0.183  Sum_probs=141.7

Q ss_pred             CCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          422 SQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      +.++.|+|++|++++..+..|. .+++|+.|+|++|.+++..+..|..+                               
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-------------------------------   87 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-------------------------------   87 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-------------------------------
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-------------------------------
Confidence            4689999999999988888887 99999999999999998888888764                               


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ  580 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  580 (710)
                                  ++|+.|+|++|++++..+..|.++++|++|+|++|.|+++.+..|.++++|+.|+|++|+|+...+..
T Consensus        88 ------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           88 ------------PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             ------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             ------------CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence                        49999999999999888889999999999999999999999999999999999999999999766655


Q ss_pred             c---ccCCCCCEEeccCCccccccCCCcccccc--CCcccccCCCCCCCCC
Q 005168          581 L---VELKTLEVFSVAYNNLSGEILEWTAQFAT--FNKSSYEGNTFLCGLP  626 (710)
Q Consensus       581 l---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--~~~~~~~~n~~~c~~~  626 (710)
                      +   ..+++|+.|++++|++....+..+..+..  +..+.+.+|||.|+|.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            6   56999999999999999765555555554  3668899999999984

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.9e-18  Score=165.48  Aligned_cols=137  Identities=26%  Similarity=0.244  Sum_probs=123.2

Q ss_pred             CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168          422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK  501 (710)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (710)
                      ++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..                                 
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------------------------------   86 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------------------------------   86 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc---------------------------------
Confidence            68999999999999888888999999999999999998766666665                                 


Q ss_pred             cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                                +++|+.|+|++|.+++..+..|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++++..+..+
T Consensus        87 ----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           87 ----------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             ----------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHH
Confidence                      34899999999999988888899999999999999999955 6778999999999999999998777889


Q ss_pred             ccCCCCCEEeccCCccccccC
Q 005168          582 VELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       582 ~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      ..+++|+.|++++|++.|.|+
T Consensus       156 ~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCTTCCEEECTTSCBCTTBG
T ss_pred             hCCCCCCEEEeeCCCccCCcc
Confidence            999999999999999999886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.9e-18  Score=165.94  Aligned_cols=158  Identities=17%  Similarity=0.214  Sum_probs=141.3

Q ss_pred             ccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC-CCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168          424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN  502 (710)
Q Consensus       424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (710)
                      -+.+++++|.++. +|..+  ...+++|++++|.+++..+ ..|..                                  
T Consensus        13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~----------------------------------   55 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKK----------------------------------   55 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGG----------------------------------
T ss_pred             CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhcc----------------------------------
Confidence            3689999999985 45544  3467999999999998755 34554                                  


Q ss_pred             ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168          503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV  582 (710)
Q Consensus       503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~  582 (710)
                               +++|+.|+|++|.+++..+..|.++++|++|+|++|.++++.++.|.++++|++|+|++|+|++..|..|.
T Consensus        56 ---------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           56 ---------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI  126 (220)
T ss_dssp             ---------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred             ---------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence                     45899999999999998888999999999999999999999999999999999999999999999899999


Q ss_pred             cCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          583 ELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       583 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      .+++|+.|++++|.+++..|..+..+..+..+.+.+|++.|+|+.
T Consensus       127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999999999999999998898889999999999999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=9.3e-18  Score=169.89  Aligned_cols=81  Identities=28%  Similarity=0.491  Sum_probs=51.8

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV  592 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l  592 (710)
                      ++|+.|++++|.+++.  ..+..+++|++|++++|.++++.+  +..+++|+.|++++|+++. ++ .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            3566666666666543  456666677777777777766544  6666777777777777664 33 2666677777777


Q ss_pred             cCCcccc
Q 005168          593 AYNNLSG  599 (710)
Q Consensus       593 ~~N~l~~  599 (710)
                      ++|++..
T Consensus       208 ~~n~i~~  214 (291)
T 1h6t_A          208 FSQECLN  214 (291)
T ss_dssp             EEEEEEC
T ss_pred             cCCcccC
Confidence            7776664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.2e-17  Score=162.69  Aligned_cols=157  Identities=24%  Similarity=0.317  Sum_probs=140.7

Q ss_pred             CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168          423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN  502 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (710)
                      ..+.++.+++.++. +|..+  .++|++|++++|.+++..|..|..+                                 
T Consensus        20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l---------------------------------   63 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSL---------------------------------   63 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTC---------------------------------
T ss_pred             eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCc---------------------------------
Confidence            46778999998884 45444  3899999999999998888888764                                 


Q ss_pred             ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168          503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV  582 (710)
Q Consensus       503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~  582 (710)
                                ++|+.|+|++|.+.+..+..|.++++|+.|+|++|+++++.+..|..+++|++|+|++|+|+ .+|..+.
T Consensus        64 ----------~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           64 ----------INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             ----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             ----------cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence                      48999999999999888888999999999999999999999999999999999999999999 7788899


Q ss_pred             cCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          583 ELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       583 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      .+++|+.|++++|.+....+..+..+..++.+.+.+||+.|+|+
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999999999998777778888899999999999999985

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1e-17  Score=183.73  Aligned_cols=56  Identities=27%  Similarity=0.310  Sum_probs=33.0

Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS  377 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~  377 (710)
                      +|+.|++++|.+..            +|..+  .++|++|++++|.++. +|   ..+++|++|++++|.++++
T Consensus        60 ~L~~L~Ls~n~L~~------------lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~i  115 (571)
T 3cvr_A           60 QFSELQLNRLNLSS------------LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTL  115 (571)
T ss_dssp             TCSEEECCSSCCSC------------CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC
T ss_pred             CccEEEeCCCCCCc------------cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCc
Confidence            67777666665542            33333  2567777777776663 33   3356666677766666653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=1.4e-17  Score=182.72  Aligned_cols=196  Identities=23%  Similarity=0.292  Sum_probs=111.2

Q ss_pred             CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168          255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL  334 (710)
Q Consensus       255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~  334 (710)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|.+..            +|. +
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~------------ip~-l  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST------------LPE-L  118 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC------------CCC-C
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC------------cch-h
Confidence            67777777777765 44333  256777777777776 666    135666666666665542            232 3


Q ss_pred             cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168          335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI  414 (710)
Q Consensus       335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~  414 (710)
                      ..  +|++|++++|.+++ +|.   .+++|+.|++++|.++++                                     
T Consensus       119 ~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-------------------------------------  155 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-------------------------------------  155 (571)
T ss_dssp             CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------------------------------------
T ss_pred             hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-------------------------------------
Confidence            32  55555555555554 222   344555555555544421                                     


Q ss_pred             ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168          415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP  494 (710)
Q Consensus       415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (710)
                      |.   .+++|++|++++|++++ +|. |.  ++|+.|++++|.++ .+|. +.. .+                       
T Consensus       156 p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L-----------------------  202 (571)
T 3cvr_A          156 PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RN-----------------------  202 (571)
T ss_dssp             CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------------------
T ss_pred             CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hh-----------------------
Confidence            21   24577777777777775 444 54  77778888777776 3333 321 00                       


Q ss_pred             CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCcc
Q 005168          495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH  562 (710)
Q Consensus       495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  562 (710)
                                    ....+.|+.|+|++|.++. +|..+..+++|+.|+|++|.+++..|..+..++.
T Consensus       203 --------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          203 --------------HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             -------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             --------------hcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                          0001234677777777763 4555555777777777777777666666665443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=5.2e-18  Score=175.35  Aligned_cols=143  Identities=20%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             CCCCcEEEccCCcccccCccCccC-CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcC------
Q 005168          204 NTKLATLFLVNDSLAGPFWLPIHS-HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN------  276 (710)
Q Consensus       204 l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~------  276 (710)
                      +++++.|.++++ +.......+.. +++|++|||++|++. ....... .++.+..+.+..|.   +.+.+|.+      
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~-~~~~~~~~~~~~~~---I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAG-TYPNGKFYIYMANF---VPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSS-SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccc-cccccccccccccc---cCHHHhcccccccc
Confidence            456777777653 11111112222 677888888888776 1111101 12234455555553   44566777      


Q ss_pred             --CCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCc----c
Q 005168          277 --MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH----L  350 (710)
Q Consensus       277 --l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l  350 (710)
                        +++|+.|++.+ .++ .++..+|.++++|+.++++.|.+..           +.+.+|.++.++..+....+.    .
T Consensus        98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~-----------i~~~aF~~~~~l~~l~~~~~~~~~~~  164 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPN-----------LLPEALADSVTAIFIPLGSSDAYRFK  164 (329)
T ss_dssp             EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCE-----------ECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred             cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccc-----------cchhhhcCCCceEEecCcchhhhhcc
Confidence              88888888877 676 7788888788888888777766553           455667666666666655432    1


Q ss_pred             ccccchhhcCCCCCC
Q 005168          351 EGPIPVEFCQLYSLQ  365 (710)
Q Consensus       351 ~~~~~~~~~~l~~L~  365 (710)
                      ......+|.++..|+
T Consensus       165 ~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          165 NRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTTTTSCEEESCCCE
T ss_pred             ccccccccccccccc
Confidence            222334455555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2e-17  Score=156.39  Aligned_cols=168  Identities=24%  Similarity=0.331  Sum_probs=131.9

Q ss_pred             cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccc
Q 005168          425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI  503 (710)
Q Consensus       425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (710)
                      +.+++++|.++ .+|..+.  .++++|++++|.+++..+. .|..                                   
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~-----------------------------------   52 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR-----------------------------------   52 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence            78889998887 4554443  3899999999999876664 3554                                   


Q ss_pred             cceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168          504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE  583 (710)
Q Consensus       504 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~  583 (710)
                              +++|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|++|+|++..|+.+..
T Consensus        53 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (192)
T 1w8a_A           53 --------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             --------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             --------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence                    448999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeccCCccccccCCCcccccc-CCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 005168          584 LKTLEVFSVAYNNLSGEILEWTAQFAT-FNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDD  647 (710)
Q Consensus       584 l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~  647 (710)
                      +++|+.|++++|+|.|.|+.  .++.. +......++..       .|..|...++..+......
T Consensus       125 l~~L~~L~L~~N~l~c~c~l--~~~~~~l~~~~~~~~~~-------~C~~P~~l~~~~l~~l~~~  180 (192)
T 1w8a_A          125 LNSLTSLNLASNPFNCNCHL--AWFAEWLRKKSLNGGAA-------RCGAPSKVRDVQIKDLPHS  180 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGGG--HHHHHHHHHHCCSGGGC-------BBCSSTTTTTSBGGGSCTT
T ss_pred             CCCCCEEEeCCCCccCcCcc--hHHHHHHHHcCCCCCCC-------CCCCChHHcCCChhhCcHh
Confidence            99999999999999999863  22222 12222333333       3666766666655444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=4.7e-18  Score=175.66  Aligned_cols=288  Identities=13%  Similarity=0.015  Sum_probs=162.9

Q ss_pred             CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc--ccCccCccCCCCCCEEEcccCcCcccCChhhhhc----
Q 005168          179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA--GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV----  252 (710)
Q Consensus       179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~----  252 (710)
                      +.+++.|.++++- ...-...+...+++|+.|+|++|++.  ......   ++.++.+.+..+    .+|...|..    
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence            4578888887642 21112233223788999999999887  222222   222455555544    456666776    


Q ss_pred             ----CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168          253 ----LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG  328 (710)
Q Consensus       253 ----~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~  328 (710)
                          +++|+.+++.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|.++.++..+....+...       .....
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~-------~~~~~  166 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY-------RFKNR  166 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH-------HTSTT
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh-------hcccc
Confidence                88999999988 888888888999999999999999888 888888888887777766543210       01112


Q ss_pred             CcCccccCCCccc-eeeCccCccccccchhh-c---CCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccc
Q 005168          329 NIPGWLGNLTWLI-HIIMPENHLEGPIPVEF-C---QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR  403 (710)
Q Consensus       329 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~-~---~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  403 (710)
                      +...+|.++..|+ .+.+....   ..+..+ .   ...+++.+.+.++-...                           
T Consensus       167 i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~---------------------------  216 (329)
T 3sb4_A          167 WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNA---------------------------  216 (329)
T ss_dssp             TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHH---------------------------
T ss_pred             ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHH---------------------------
Confidence            3345566666666 44333221   111111 1   12223333332210000                           


Q ss_pred             cCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcc
Q 005168          404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDE  483 (710)
Q Consensus       404 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  483 (710)
                               ........+++|+.+++++|+++.+.+.+|.++++|+.+++.+| +..+.+.+|.++.             
T Consensus       217 ---------~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-------------  273 (329)
T 3sb4_A          217 ---------DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-------------  273 (329)
T ss_dssp             ---------HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-------------
T ss_pred             ---------HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-------------
Confidence                     00001123567777777777777666667777777777777666 5544444454433             


Q ss_pred             ccccceeecCCCcceeeccccceeccccccccc-EEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCcc
Q 005168          484 KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS-GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH  562 (710)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  562 (710)
                                                    +|+ .+++.+ .++.+.+.+|.++++|+++++++|.++.+.+.+|.++++
T Consensus       274 ------------------------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~  322 (329)
T 3sb4_A          274 ------------------------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP  322 (329)
T ss_dssp             ------------------------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred             ------------------------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence                                          454 555544 444444455555555555555555555555555555555


Q ss_pred             CCEEe
Q 005168          563 IESLD  567 (710)
Q Consensus       563 L~~L~  567 (710)
                      |+.++
T Consensus       323 L~~ly  327 (329)
T 3sb4_A          323 SKLIY  327 (329)
T ss_dssp             CCEEE
T ss_pred             hhhhc
Confidence            55543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.2e-17  Score=165.01  Aligned_cols=127  Identities=23%  Similarity=0.316  Sum_probs=65.7

Q ss_pred             CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168          227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ  306 (710)
Q Consensus       227 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  306 (710)
                      .+++|+.|++++|.++ .++. + ..+++|++|++++|.+++..+  +.++++|+.|++++|.++ .++.  +..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred             hcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence            3445555555555554 3332 2 224555555555555554332  555555555555555555 3332  33455555


Q ss_pred             EEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc
Q 005168          307 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG  376 (710)
Q Consensus       307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~  376 (710)
                      +|++++|.+..             ...+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+
T Consensus       116 ~L~L~~n~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          116 SLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             EEECCCCcCCC-------------ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            55555555442             12345555556666665555543  345556666666666665553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.2e-17  Score=164.33  Aligned_cols=172  Identities=22%  Similarity=0.269  Sum_probs=125.1

Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP  415 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~  415 (710)
                      .+.++..++++++.+.+..  .+..+++|++|++++|.+..+                                     +
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-------------------------------------~   57 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-------------------------------------A   57 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-------------------------------------T
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-------------------------------------h
Confidence            4556677777777777543  467778888888888877632                                     1


Q ss_pred             hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168          416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ  495 (710)
Q Consensus       416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (710)
                       .+..+++|++|++++|++++..+  +..+++|+.|++++|.+++..+...                             
T Consensus        58 -~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-----------------------------  105 (263)
T 1xeu_A           58 -GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-----------------------------  105 (263)
T ss_dssp             -TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-----------------------------
T ss_pred             -HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-----------------------------
Confidence             24456777777777777775444  7777788888888887764322110                             


Q ss_pred             cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                       ++|+.|++++|.+++.  ..+..+++|++|+|++|+++++  ..+..+++|+.|++++|++++
T Consensus       106 -----------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          106 -----------------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             -----------------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             -----------------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence                             2688888888888754  3578888888888888888877  367888888888888888886


Q ss_pred             cCCcccccCCCCCEEeccCCcccccc
Q 005168          576 KIPHQLVELKTLEVFSVAYNNLSGEI  601 (710)
Q Consensus       576 ~~~~~l~~l~~L~~L~l~~N~l~~~~  601 (710)
                      .  ..+..+++|+.|++++|++.+..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCCc
Confidence            5  56778888888888888887753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.7e-17  Score=182.52  Aligned_cols=100  Identities=20%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168          256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG  335 (710)
Q Consensus       256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~  335 (710)
                      +..+.+..+.+....+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+..           ..+  +.
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~-----------~~~--l~   84 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTD-----------IKP--LT   84 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCC-----------CGG--GG
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCC-----------Chh--hc
Confidence            4444445554443322  344555556666666555 4442  3345555555555554432           111  44


Q ss_pred             CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168          336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS  375 (710)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~  375 (710)
                      .+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus        85 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  122 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS  122 (605)
T ss_dssp             GCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCC
Confidence            555555555555555432  13445555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=7.3e-17  Score=179.00  Aligned_cols=80  Identities=29%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      +|+.|+|++|.+++.  ..+..+++|+.|+|++|.++++.|  +..+++|+.|+|++|+|++. | .+..+++|+.|+++
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEcc
Confidence            444444444444432  334444444444444444444433  44444455555555544432 2 24444445555555


Q ss_pred             CCcccc
Q 005168          594 YNNLSG  599 (710)
Q Consensus       594 ~N~l~~  599 (710)
                      +|++.+
T Consensus       206 ~N~l~~  211 (605)
T 1m9s_A          206 SQECLN  211 (605)
T ss_dssp             SEEEEC
T ss_pred             CCcCcC
Confidence            544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=155.09  Aligned_cols=170  Identities=22%  Similarity=0.312  Sum_probs=132.0

Q ss_pred             cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecccc
Q 005168          425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA  504 (710)
Q Consensus       425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (710)
                      +.+++++|.++. +|..+  .++|++|++++|.++ .+|..|..                                    
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~------------------------------------   52 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSN------------------------------------   52 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence            578888888884 44443  258999999999987 45566655                                    


Q ss_pred             ceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC
Q 005168          505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  584 (710)
Q Consensus       505 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l  584 (710)
                             +++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.++.|.++++|+.|+|++|+|+...+..|..+
T Consensus        53 -------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (193)
T 2wfh_A           53 -------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL  125 (193)
T ss_dssp             -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             -------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence                   4489999999999998888899999999999999999999999999999999999999999997777789999


Q ss_pred             CCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168          585 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL  649 (710)
Q Consensus       585 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  649 (710)
                      ++|+.|++++|+|.|+|..  .++..+....... +     ....|..|...++..+.....+..
T Consensus       126 ~~L~~L~L~~N~~~C~c~l--~~l~~~~~~~~~~-~-----~~~~C~~P~~l~g~~l~~~~~~~~  182 (193)
T 2wfh_A          126 SALSHLAIGANPLYCDCNM--QWLSDWVKSEYKE-P-----GIARCAGPGEMADKLLLTTPSKKF  182 (193)
T ss_dssp             TTCCEEECCSSCEECSGGG--HHHHHHHHHSSCC-C-----SCCBEEESGGGTTCBTTTSCGGGC
T ss_pred             ccccEEEeCCCCeecCCcC--HHHHHHHHhccCC-C-----CCcCcCCchHHCCCCcccCChHHe
Confidence            9999999999999998852  2332221111100 0     112588888888876666555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.4e-19  Score=195.01  Aligned_cols=122  Identities=28%  Similarity=0.289  Sum_probs=80.5

Q ss_pred             CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168          423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN  502 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (710)
                      .|+.|+|++|.+++ +|. +..+++|+.|++++|.++ .+|..++.                                  
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------  484 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA----------------------------------  484 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------------------------
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------------------------
Confidence            46777777777775 344 677777777777777776 45555544                                  


Q ss_pred             ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC-chhhcCCccCCEEeCcCCcCcccCCcc-
Q 005168          503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPHQ-  580 (710)
Q Consensus       503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~-  580 (710)
                               +++|+.|+|++|.+++ +| .|..+++|+.|+|++|.++++. |..|..+++|+.|+|++|++++..|.. 
T Consensus       485 ---------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          485 ---------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             ---------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             ---------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence                     3367777777777765 44 6777777777777777777766 677777777777777777777554422 


Q ss_pred             --cccCCCCCEEec
Q 005168          581 --LVELKTLEVFSV  592 (710)
Q Consensus       581 --l~~l~~L~~L~l  592 (710)
                        +..+++|+.|++
T Consensus       554 ~l~~~lp~L~~L~l  567 (567)
T 1dce_A          554 RLAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHHCTTCSEEEC
T ss_pred             HHHHHCcccCccCC
Confidence              233667776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.1e-15  Score=161.30  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC-CCCEEec
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSV  592 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L~l  592 (710)
                      +|+.+++.+ .++.+...+|.++++|+.++|..+ ++.+...+|.++ +|+.+++++|.+....+..|..++ .++.+.+
T Consensus       301 ~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          301 KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence            566666653 355556667777888888888554 677777788888 888888888877766667777774 6778887


Q ss_pred             cCCccc
Q 005168          593 AYNNLS  598 (710)
Q Consensus       593 ~~N~l~  598 (710)
                      ..+.+.
T Consensus       378 p~~~~~  383 (401)
T 4fdw_A          378 PAESVE  383 (401)
T ss_dssp             CGGGHH
T ss_pred             CHHHHH
Confidence            777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.1e-16  Score=152.15  Aligned_cols=132  Identities=17%  Similarity=0.293  Sum_probs=83.8

Q ss_pred             hhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168          418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD  497 (710)
Q Consensus       418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (710)
                      +..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..                             
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----------------------------  110 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-----------------------------  110 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----------------------------
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-----------------------------
Confidence            334555666666666444  2234556666666666666666545554444                             


Q ss_pred             eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168          498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK  576 (710)
Q Consensus       498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~i~~~  576 (710)
                                    +++|+.|++++|.+++..+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|+++. 
T Consensus       111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-
T ss_pred             --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-
Confidence                          2366666666666666566667777777777777776 6655 2 57777778888888887774 


Q ss_pred             CCcccccCCCCCEEeccCCccc
Q 005168          577 IPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       577 ~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      ++ .+..+++|+.|++++|++.
T Consensus       174 ~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CT-TGGGCSSCCEEEECBC---
T ss_pred             hH-HhccCCCCCEEEeeCcccC
Confidence            33 5677777888888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-16  Score=151.51  Aligned_cols=154  Identities=18%  Similarity=0.276  Sum_probs=107.3

Q ss_pred             cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168          335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI  414 (710)
Q Consensus       335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~  414 (710)
                      ..+++|++|++++|.+.. .+ .+..+++|++|++++|.+..                                      
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--------------------------------------   80 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--------------------------------------   80 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--------------------------------------
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--------------------------------------
Confidence            445556666666665552 22 45556666666666654331                                      


Q ss_pred             ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168          415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP  494 (710)
Q Consensus       415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (710)
                      +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..                          
T Consensus        81 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~--------------------------  134 (197)
T 4ezg_A           81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------------------------  134 (197)
T ss_dssp             CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT--------------------------
T ss_pred             chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh--------------------------
Confidence            123556778888888888887666777888888888888888887655555544                          


Q ss_pred             CcceeeccccceecccccccccEEECcCCc-CCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNK-LIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                       +++|+.|++++|. ++ ..+ .+..+++|++|++++|.++++.  .+..+++|++|++++|+|
T Consensus       135 -----------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          135 -----------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             -----------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             -----------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence                             3478888888887 55 344 6888999999999999999864  788899999999999988


Q ss_pred             cc
Q 005168          574 NG  575 (710)
Q Consensus       574 ~~  575 (710)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=1.5e-16  Score=150.37  Aligned_cols=155  Identities=23%  Similarity=0.280  Sum_probs=115.5

Q ss_pred             CccEEecCCCcccccCCc-ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168          423 QLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK  501 (710)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (710)
                      ++++|++++|++++..+. .|..+++|++|++++|.+++..|..|.++.                               
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------   78 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-------------------------------   78 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-------------------------------
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-------------------------------
Confidence            788888888888766654 478888888888888888887787776643                               


Q ss_pred             cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                                  +|+.|+|++|++++..+..|.++++|++|+|++|+++++.|+.|..+++|++|++++|++.+..+-..
T Consensus        79 ------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  146 (192)
T 1w8a_A           79 ------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             ------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             ------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence                        88889999998888888889999999999999999999999999999999999999999987655221


Q ss_pred             ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168          582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG  624 (710)
Q Consensus       582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~  624 (710)
                      . ...++...+.++...|..|..+..   ....++..+.+.|.
T Consensus       147 ~-~~~l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          147 F-AEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCS  185 (192)
T ss_dssp             H-HHHHHHHCCSGGGCBBCSSTTTTT---SBGGGSCTTTCCCC
T ss_pred             H-HHHHHHcCCCCCCCCCCCChHHcC---CChhhCcHhhcCcC
Confidence            0 011222345566677776764432   33334555556664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=2.1e-15  Score=158.93  Aligned_cols=266  Identities=14%  Similarity=0.137  Sum_probs=152.5

Q ss_pred             CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168          228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  307 (710)
                      +..++.+.+.. .++ .++...|... +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++..+|.++++|+.
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            45666666653 454 5555555533 6777776655 555666667664 577777764 455 666667777777777


Q ss_pred             EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI  387 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L  387 (710)
                      ++++.|.+..           +...+|. +.+|+.+.+.++ +..+...+|.++++|+.+++..+ +..+...+|...+|
T Consensus       185 l~l~~n~l~~-----------I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L  250 (401)
T 4fdw_A          185 ADLSKTKITK-----------LPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGI  250 (401)
T ss_dssp             EECTTSCCSE-----------ECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCC
T ss_pred             eecCCCcceE-----------echhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCc
Confidence            7766665543           3344454 466777776633 55556666777777777777653 55555666655556


Q ss_pred             ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCccc-----ccCCcccCCCCCCCEEEccCCcccccC
Q 005168          388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE-----GEVPVQLCELNQLQLLDLSNNSLHGSI  462 (710)
Q Consensus       388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~  462 (710)
                      +.+.+..+ +             ..+-+.+|.++++|+.+.+.+|.+.     .+.+.+|.++++|+.+++.+ .+..+.
T Consensus       251 ~~i~lp~~-i-------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~  315 (401)
T 4fdw_A          251 TTVKLPNG-V-------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG  315 (401)
T ss_dssp             SEEEEETT-C-------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred             cEEEeCCC-c-------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence            66655211 1             1133455556666666666555443     34445566666666666653 344444


Q ss_pred             CCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEE
Q 005168          463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL  542 (710)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  542 (710)
                      ..+|.++.                                           +|+.++|.++ ++.+...+|.++ +|+.+
T Consensus       316 ~~aF~~c~-------------------------------------------~L~~l~lp~~-l~~I~~~aF~~~-~L~~l  350 (401)
T 4fdw_A          316 QGLLGGNR-------------------------------------------KVTQLTIPAN-VTQINFSAFNNT-GIKEV  350 (401)
T ss_dssp             TTTTTTCC-------------------------------------------SCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred             hhhhcCCC-------------------------------------------CccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence            45554433                                           5666666433 444555566666 66666


Q ss_pred             eCCCccCCCCCchhhcCCc-cCCEEeCcCCcCc
Q 005168          543 NLSYNNLTGLIPSTFSNLK-HIESLDLSYNKLN  574 (710)
Q Consensus       543 ~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~i~  574 (710)
                      ++++|.+..+.+.+|.+++ +++.|++..+.+.
T Consensus       351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            6666666655555666553 5566666555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1.5e-18  Score=191.35  Aligned_cols=215  Identities=23%  Similarity=0.200  Sum_probs=148.5

Q ss_pred             cCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCe--eeccCccCccCcCccccCCCccceee-CccCccc
Q 005168          275 GNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG--LYLTNNSLSGNIPGWLGNLTWLIHII-MPENHLE  351 (710)
Q Consensus       275 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--l~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~  351 (710)
                      ..+++|+.|+|++|++. .+|..+. .+++|+.|++++|.....  ..+..+...+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45677888888888887 7777765 577888887766541100  01112233445667777778888777 5555432


Q ss_pred             cccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCC
Q 005168          352 GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH  431 (710)
Q Consensus       352 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~  431 (710)
                                 .|+.+.+++|.+..+.+     ..|+.|++++|.++              .+|. +..+++|+.|+|++
T Consensus       424 -----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~--------------~lp~-~~~l~~L~~L~Ls~  472 (567)
T 1dce_A          424 -----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT--------------VLCH-LEQLLLVTHLDLSH  472 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS--------------SCCC-GGGGTTCCEEECCS
T ss_pred             -----------hhhhhhhhcccccccCc-----cCceEEEecCCCCC--------------CCcC-ccccccCcEeecCc
Confidence                       22223333444433221     13555555444443              2444 77788999999999


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccc
Q 005168          432 NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKV  511 (710)
Q Consensus       432 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (710)
                      |.++ .+|..++.+++|+.|+|++|.+++ +| .++.                                           
T Consensus       473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-------------------------------------------  506 (567)
T 1dce_A          473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN-------------------------------------------  506 (567)
T ss_dssp             SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-------------------------------------------
T ss_pred             cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-------------------------------------------
Confidence            9998 677889999999999999999986 44 5544                                           


Q ss_pred             cccccEEECcCCcCCCCC-CccccccCCCCEEeCCCccCCCCCch---hhcCCccCCEEeC
Q 005168          512 LSLLSGLYLSCNKLIGHI-PPQIGNLTRIQTLNLSYNNLTGLIPS---TFSNLKHIESLDL  568 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L  568 (710)
                      +++|+.|+|++|.+++.. |..|..+++|+.|+|++|.++++++.   .+..+++|+.|++
T Consensus       507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            448999999999999877 89999999999999999999988653   3455889999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=6.7e-16  Score=153.64  Aligned_cols=59  Identities=27%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  576 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~  576 (710)
                      +|+.|++++|++++. + .+..+++|++|+|++|.++++  ..+..+++|+.|++++|++...
T Consensus       129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            444444444444432 1 455666666666666666665  5566666777777777766643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=144.02  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=106.2

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV  592 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l  592 (710)
                      +.++.|++++|.++ .+|..|.++++|+.|+|++|.|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            47999999999998 56789999999999999999999999999999999999999999999988889999999999999


Q ss_pred             cCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168          593 AYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL  627 (710)
Q Consensus       593 ~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  627 (710)
                      ++|.++...+..+..+..+..+.+.+|||.|+|..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999987777778888999999999999999764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=9.9e-15  Score=154.64  Aligned_cols=309  Identities=12%  Similarity=0.101  Sum_probs=154.3

Q ss_pred             hcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCC
Q 005168          202 ENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ  281 (710)
Q Consensus       202 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~  281 (710)
                      .++.+|+++.+.. .++.+...+|.++++|+.+++.++ ++ .++...|..+.+|+.+.+..+ +..+...+|.++..+.
T Consensus        68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            3444444444432 233333344444444444444322 33 334444433444444433322 2223334444443222


Q ss_pred             EEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCC
Q 005168          282 LLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL  361 (710)
Q Consensus       282 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  361 (710)
                      ......  .. .+...+|.++++|+.+.+..+...            +...+|.++++|+.+.+..+ +..+...+|.++
T Consensus       144 ~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~  207 (394)
T 4fs7_A          144 ITIPEG--VT-VIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC  207 (394)
T ss_dssp             EECCTT--CC-EECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred             cccCcc--cc-ccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence            222111  11 333444445555555544332111            22334455555555555433 332334445555


Q ss_pred             CCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcc
Q 005168          362 YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQ  441 (710)
Q Consensus       362 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  441 (710)
                      ..|+.+.+..+... +....+....|+.+.+....              ...-..+|.++..++.+.+..+... +...+
T Consensus       208 ~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--------------~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~  271 (394)
T 4fs7_A          208 ILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--------------TELGKSVFYGCTDLESISIQNNKLR-IGGSL  271 (394)
T ss_dssp             TTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--------------CEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred             cccceeecCCCceE-eehhhcccCCCceEEECCCc--------------eecccccccccccceeEEcCCCcce-eeccc
Confidence            55555554433221 22333334444444432211              0122334555666666666655433 44555


Q ss_pred             cCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECc
Q 005168          442 LCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLS  521 (710)
Q Consensus       442 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~  521 (710)
                      |..+..++.+....+.+   ....|..                                           ..+|+.+.+.
T Consensus       272 F~~~~~l~~~~~~~~~i---~~~~F~~-------------------------------------------~~~L~~i~l~  305 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIV---PEKTFYG-------------------------------------------CSSLTEVKLL  305 (394)
T ss_dssp             TTTCTTCCEEEECSSEE---CTTTTTT-------------------------------------------CTTCCEEEEC
T ss_pred             cccccccceeccCceee---ccccccc-------------------------------------------cccccccccc
Confidence            66666666666654432   1223333                                           2366777765


Q ss_pred             CCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCC
Q 005168          522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN  595 (710)
Q Consensus       522 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N  595 (710)
                      ++ ++.+...+|.++++|+.++|.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            44 55456677888888888888644 77777778888888888888766 66566677888888888877654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=2.8e-15  Score=139.65  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=113.3

Q ss_pred             ccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccc
Q 005168          424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI  503 (710)
Q Consensus       424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (710)
                      .+.+++++++++.. |..+  .++|+.|++++|.+++..+..|..                                   
T Consensus         9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-----------------------------------   50 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDK-----------------------------------   50 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred             CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcC-----------------------------------
Confidence            56788888888743 3332  368899999999988766666655                                   


Q ss_pred             cceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168          504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE  583 (710)
Q Consensus       504 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~  583 (710)
                              +++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|++++|++++..++.+..
T Consensus        51 --------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  122 (177)
T 2o6r_A           51 --------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR  122 (177)
T ss_dssp             --------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             --------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence                    348999999999999877788899999999999999999999989999999999999999999777777888


Q ss_pred             CCCCCEEeccCCccccccC
Q 005168          584 LKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       584 l~~L~~L~l~~N~l~~~~~  602 (710)
                      +++|+.|++++|++.|.++
T Consensus       123 l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          123 LTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEEecCCCeeccCc
Confidence            9999999999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.1e-16  Score=182.41  Aligned_cols=112  Identities=23%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             cCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccC
Q 005168          269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN  348 (710)
Q Consensus       269 ~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  348 (710)
                      ..+..|..++.|+.|+|++|.+. .+|..++ ++++|++|+|++|.+.            .+|..|..+++|++|+|++|
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCEEECTTS
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCCCEEeCcCC
Confidence            44566777777777777777776 6776666 5677777766666654            24556666666666666666


Q ss_pred             ccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCc
Q 005168          349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN  395 (710)
Q Consensus       349 ~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n  395 (710)
                      .++ .+|..|..+++|++|+|++|.+..++.....+.+|+.|++++|
T Consensus       281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          281 RLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             cCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            666 4466666666666666666666533322111444444433333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=1.9e-16  Score=180.32  Aligned_cols=113  Identities=21%  Similarity=0.239  Sum_probs=55.9

Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+....                      
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~----------------------  340 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS----------------------  340 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH----------------------
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc----------------------
Confidence            44566777888888888888887 5566688888888888888888877776654322                      


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc--------cCCCCCchhhcCCccCC
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN--------NLTGLIPSTFSNLKHIE  564 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~  564 (710)
                                          .....++|++|.+++.+|..      |+.|++++|        .+.+..+..+..+..++
T Consensus       341 --------------------~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~  394 (727)
T 4b8c_D          341 --------------------VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRT  394 (727)
T ss_dssp             --------------------HHHHHHHHHHCCCCCCCCCC----------------------------------------
T ss_pred             --------------------hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccc
Confidence                                01223677788887766653      445666666        34444444445555555


Q ss_pred             EEeCcCCcCc
Q 005168          565 SLDLSYNKLN  574 (710)
Q Consensus       565 ~L~Ls~N~i~  574 (710)
                      ...+++|-+.
T Consensus       395 ~~~ls~Nil~  404 (727)
T 4b8c_D          395 FTVLSYNTLC  404 (727)
T ss_dssp             -------CCC
T ss_pred             eeeeeccccc
Confidence            5666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.5e-15  Score=137.71  Aligned_cols=134  Identities=22%  Similarity=0.246  Sum_probs=106.0

Q ss_pred             CCCccEEecCCCccc-ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168          421 LSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT  499 (710)
Q Consensus       421 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (710)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            367888888888887 56677778888888888888887754  44433                               


Q ss_pred             eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCcCcccCC
Q 005168          500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                  +++|+.|++++|.+++..|..+..+++|+.|+|++|.++++.. ..+..+++|+.|++++|++++..+
T Consensus        70 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           70 ------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             ------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence                        4478888888888887777777788899999999998887643 678888899999999998886555


Q ss_pred             ---cccccCCCCCEEeccCCcccc
Q 005168          579 ---HQLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       579 ---~~l~~l~~L~~L~l~~N~l~~  599 (710)
                         ..+..+++|+.|++++|++..
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          138 YRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHHHHhCccCcEecCCCCChhh
Confidence               478888899999998887754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.4e-15  Score=134.72  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=107.9

Q ss_pred             CCCccEEecCCCccc-ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168          421 LSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT  499 (710)
Q Consensus       421 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (710)
                      .++|+.|++++|.++ +..|..+..+++|+.|++++|.+++.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            368999999999998 67777888999999999999988755  44433                               


Q ss_pred             eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC-chhhcCCccCCEEeCcCCcCcccCC
Q 005168          500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                  +++|+.|++++|.+++..|..+..+++|++|++++|.++++. +..+..+++|++|++++|++++..+
T Consensus        63 ------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           63 ------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             ------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             ------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence                        458999999999999878888888999999999999998763 4788899999999999999987665


Q ss_pred             ---cccccCCCCCEEeccC
Q 005168          579 ---HQLVELKTLEVFSVAY  594 (710)
Q Consensus       579 ---~~l~~l~~L~~L~l~~  594 (710)
                         ..+..+++|+.|++++
T Consensus       131 ~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          131 YRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHCCCcccccCCC
Confidence               5788899999998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=7.3e-14  Score=147.98  Aligned_cols=328  Identities=14%  Similarity=0.126  Sum_probs=216.4

Q ss_pred             hhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcC
Q 005168          174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL  253 (710)
Q Consensus       174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  253 (710)
                      .++..+.+|+.+.+..+ ++ .++...|.++++|+.+++.++ +..+...+|.++.+|+.+.+..+ +. .+....|...
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence            34556677777777533 33 333444567778888777643 55555567777778877766543 44 4455555434


Q ss_pred             CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168          254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW  333 (710)
Q Consensus       254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~  333 (710)
                      .. ...... ..+..+...+|.++++|+.+.+..+ +. .++..+|.++.+|+.+.+..+ +.           .+...+
T Consensus       140 ~~-~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~-~~-~I~~~~F~~c~~L~~i~l~~~-~~-----------~I~~~~  203 (394)
T 4fs7_A          140 DF-KEITIP-EGVTVIGDEAFATCESLEYVSLPDS-ME-TLHNGLFSGCGKLKSIKLPRN-LK-----------IIRDYC  203 (394)
T ss_dssp             CC-SEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCBCCCCTT-CC-----------EECTTT
T ss_pred             cc-cccccC-ccccccchhhhcccCCCcEEecCCc-cc-eeccccccCCCCceEEEcCCC-ce-----------EeCchh
Confidence            33 333222 2233355667888888888888755 34 677888888888888877654 22           134567


Q ss_pred             ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcc
Q 005168          334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNG  412 (710)
Q Consensus       334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~  412 (710)
                      |.++..|+.+.+..+...  ....+....+|+.+.+... +..+...+|. +..++.+.+..+...              
T Consensus       204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--------------  266 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--------------  266 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--------------
T ss_pred             hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--------------
Confidence            778888888777665433  2233344567888877643 3445555555 677777766554322              


Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      .....|..+..++.+....+.+   ...+|..+.+|+.+.+.++ +..+...+|.++.                      
T Consensus       267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~----------------------  320 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT----------------------  320 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT----------------------
T ss_pred             eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCC----------------------
Confidence            3445677778888887776543   3446888889999988765 5555566676654                      


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK  572 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  572 (710)
                                           +|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ 
T Consensus       321 ---------------------~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-  376 (394)
T 4fs7_A          321 ---------------------SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-  376 (394)
T ss_dssp             ---------------------TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred             ---------------------CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence                                 7888888654 66667788999999999999877 88888899999999999999765 


Q ss_pred             CcccCCcccccCCCCCEE
Q 005168          573 LNGKIPHQLVELKTLEVF  590 (710)
Q Consensus       573 i~~~~~~~l~~l~~L~~L  590 (710)
                      +. .+..+|.++++|+.+
T Consensus       377 ~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GG-GGGGGBCTTCEEEEE
T ss_pred             CE-EhhheecCCCCCcEE
Confidence            33 335567777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=2e-14  Score=132.62  Aligned_cols=137  Identities=23%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             CCCCCEEEcccCcCc-ccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168          228 HKRLGILDISNNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ  306 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  306 (710)
                      .++|++|++++|.++ +.+|..+.. +++|++|++++|.+++.  ..|..+++|++|++++|.+++.+| ..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence            356777777777776 556655433 67778888888777755  567778888888888888873344 4444578888


Q ss_pred             EEEccCCCCcCeeeccCccCccCc-CccccCCCccceeeCccCccccccc---hhhcCCCCCCEEECCCCcCcccCC
Q 005168          307 FLMLSNNSLKEGLYLTNNSLSGNI-PGWLGNLTWLIHIIMPENHLEGPIP---VEFCQLYSLQILDISDNNISGSLP  379 (710)
Q Consensus       307 ~L~Ls~n~l~~~l~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~n~i~~~~~  379 (710)
                      +|++++|.+..           .. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+...+.
T Consensus        99 ~L~Ls~N~l~~-----------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKD-----------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECBSSSCCS-----------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEeccCCccCc-----------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            88887777653           21 2567788888888888888886655   578888888888888888775543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=4.4e-14  Score=130.27  Aligned_cols=91  Identities=25%  Similarity=0.287  Sum_probs=86.2

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV  592 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l  592 (710)
                      +.++.|+|++|.+++..|..|.++++|++|+|++|+|+++.++.|.++++|++|+|++|+|++..++.|..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            37999999999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             cCCccccccCC
Q 005168          593 AYNNLSGEILE  603 (710)
Q Consensus       593 ~~N~l~~~~~~  603 (710)
                      ++|+|.|.|+.
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            99999999863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=8.3e-14  Score=129.64  Aligned_cols=130  Identities=23%  Similarity=0.258  Sum_probs=89.6

Q ss_pred             CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168          231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML  310 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  310 (710)
                      .+.+++++++++ .+|..++   ++|++|++++|.++++.+..|.++++|++|++++|.++ .++...|.++++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence            356777777776 6665443   47777777777777666666777777777777777777 666666667777777777


Q ss_pred             cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc
Q 005168          311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG  376 (710)
Q Consensus       311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~  376 (710)
                      ++|.+..           ..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus        84 ~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQS-----------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccc-----------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6666553           444556667777777777777776656566677777777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=5.9e-14  Score=126.52  Aligned_cols=129  Identities=23%  Similarity=0.230  Sum_probs=87.4

Q ss_pred             CCCCCEEEcccCcCc-ccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168          228 HKRLGILDISNNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ  306 (710)
Q Consensus       228 ~~~L~~L~ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  306 (710)
                      .+++++|++++|.++ +.+|..+.. +++|++|++++|.+++.  ..+.++++|++|++++|.+++.+|. .+.++++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCC
Confidence            356667777777766 456654333 66777777777777655  5677777888888888877733443 444577788


Q ss_pred             EEEccCCCCcCeeeccCccCccC-cCccccCCCccceeeCccCccccccc---hhhcCCCCCCEEECCC
Q 005168          307 FLMLSNNSLKEGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHLEGPIP---VEFCQLYSLQILDISD  371 (710)
Q Consensus       307 ~L~Ls~n~l~~~l~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~  371 (710)
                      +|++++|.+..           . .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~-----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKD-----------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCS-----------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCC-----------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            87777776653           1 22567777888888888887776655   5677788888887763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.4e-14  Score=131.32  Aligned_cols=136  Identities=23%  Similarity=0.263  Sum_probs=109.8

Q ss_pred             CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168          224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV  303 (710)
Q Consensus       224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  303 (710)
                      .+..+.+|++|++++|+++ .+|. +....++|++|++++|.+++.  ..|.++++|++|++++|.++ .+|..+|.+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            3556788899999999888 6654 444455999999999999876  57889999999999999998 78877777899


Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCc--cccCCCccceeeCccCccccccch---hhcCCCCCCEEECCCCcCcc
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPG--WLGNLTWLIHIIMPENHLEGPIPV---EFCQLYSLQILDISDNNISG  376 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~i~~  376 (710)
                      +|++|++++|.+..            +|.  .+..+++|+.|++++|.+....+.   .+..+++|+.|++++|....
T Consensus        89 ~L~~L~L~~N~i~~------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLVE------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCCC------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCCc------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999998888763            344  688889999999999998854332   48889999999999887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.4e-14  Score=131.31  Aligned_cols=134  Identities=19%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             hhcCCCccEEecCCCcccccCCcccCCC-CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCc
Q 005168          418 IGELSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG  496 (710)
Q Consensus       418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (710)
                      +..+++|++|++++|.++.. +. +..+ ++|+.|++++|.+++.  ..+..                            
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~----------------------------   62 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPL----------------------------   62 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence            45578899999999998854 44 4444 4899999999998864  34433                            


Q ss_pred             ceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCcCcc
Q 005168          497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                                     +++|+.|++++|.+++..+..|..+++|++|+|++|.++.+.+ ..+..+++|+.|++++|++. 
T Consensus        63 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-  126 (176)
T 1a9n_A           63 ---------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-  126 (176)
T ss_dssp             ---------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-
T ss_pred             ---------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-
Confidence                           4589999999999997766667899999999999999987643 47888999999999999998 


Q ss_pred             cCCc----ccccCCCCCEEeccCCcccc
Q 005168          576 KIPH----QLVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       576 ~~~~----~l~~l~~L~~L~l~~N~l~~  599 (710)
                      .+|.    .+..+++|+.||+++|....
T Consensus       127 ~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          127 NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            4555    48889999999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=1.8e-12  Score=137.23  Aligned_cols=307  Identities=11%  Similarity=0.111  Sum_probs=143.4

Q ss_pred             CCcEEEccCCcccccCccCccCCCCCCEEEcccCc---CcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCE
Q 005168          206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN---IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL  282 (710)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~---i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~  282 (710)
                      .|+++.+.. .++.+-..+|.++.+|+.+.+..+.   ++ .++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.
T Consensus        65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            355555543 2444444556666666666665442   43 444455544555555555433 33345556666666666


Q ss_pred             EeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCC
Q 005168          283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY  362 (710)
Q Consensus       283 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  362 (710)
                      +.+..+ +. .++..+|.++.+|+.+.+..+- .           .+...+|.+ ..|+.+.+..+- ......+|.++.
T Consensus       142 i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-----------~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~  205 (394)
T 4gt6_A          142 VTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-----------AIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECF  205 (394)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-----------EECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCT
T ss_pred             ccccce-ee-eecccceeccccccccccccee-e-----------Eeccccccc-cceeEEEECCcc-cccccchhhhcc
Confidence            666533 33 4555566566666666554331 1           122333432 345555554332 223445555666


Q ss_pred             CCCEEECCCCcCcccCCCCCCCC--------------CcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEe
Q 005168          363 SLQILDISDNNISGSLPSCFHPL--------------SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLI  428 (710)
Q Consensus       363 ~L~~L~ls~n~i~~~~~~~~~~~--------------~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~  428 (710)
                      +++................+...              .+..+.+.              +.+...-..+|.++..|+.+.
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--------------~~v~~i~~~aF~~c~~L~~i~  271 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--------------NGVARIETHAFDSCAYLASVK  271 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--------------TTEEEECTTTTTTCSSCCEEE
T ss_pred             ccceecccccccccccceeecccccccccccccccccccceEEcC--------------CcceEcccceeeecccccEEe
Confidence            66655554443332211111100              01111000              111112234555666666666


Q ss_pred             cCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceec
Q 005168          429 LGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ  508 (710)
Q Consensus       429 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (710)
                      +.++... +...+|.++++|+.+.+. +.+..+...+|.++.                                      
T Consensus       272 lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~--------------------------------------  311 (394)
T 4gt6_A          272 MPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI--------------------------------------  311 (394)
T ss_dssp             CCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT--------------------------------------
T ss_pred             cccccce-ecCcccccccccccccCC-CcccccCceeecCCC--------------------------------------
Confidence            6544332 444556666666666664 234434444454433                                      


Q ss_pred             ccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCC
Q 005168          509 GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE  588 (710)
Q Consensus       509 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~  588 (710)
                           +|+.+++..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++++|+.+++.++....   .++.....|+
T Consensus       312 -----~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~  381 (394)
T 4gt6_A          312 -----SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQ  381 (394)
T ss_dssp             -----TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-
T ss_pred             -----CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCC
Confidence                 5555555433 44344555666666666666433 555555666666666666666554331   2344455555


Q ss_pred             EEeccCC
Q 005168          589 VFSVAYN  595 (710)
Q Consensus       589 ~L~l~~N  595 (710)
                      .+.+..|
T Consensus       382 ~i~i~~~  388 (394)
T 4gt6_A          382 NLPVAPG  388 (394)
T ss_dssp             -------
T ss_pred             EEEeCCC
Confidence            5555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.5e-13  Score=127.12  Aligned_cols=91  Identities=24%  Similarity=0.300  Sum_probs=85.5

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV  592 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l  592 (710)
                      +.|+.|+|++|.+++..|..|.++++|++|+|++|+|+++++..|.++++|++|+|++|+|++..+..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            38999999999999999999999999999999999999999989999999999999999999777777999999999999


Q ss_pred             cCCccccccCC
Q 005168          593 AYNNLSGEILE  603 (710)
Q Consensus       593 ~~N~l~~~~~~  603 (710)
                      ++|+|.|.++.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999998763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=1.6e-11  Score=129.89  Aligned_cols=315  Identities=10%  Similarity=0.061  Sum_probs=214.2

Q ss_pred             ccccCccCccCCC-CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc---CcccCCccCcCCCCCCEEeccCCccCC
Q 005168          217 LAGPFWLPIHSHK-RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA---LDGSIPSSFGNMKFLQLLDLSNNQLTG  292 (710)
Q Consensus       217 ~~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~f~~l~~L~~L~Ls~n~l~~  292 (710)
                      ++.+-..+|.+++ .|+.+.+..+ ++ .+....|..+.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++ 
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence            3344456777775 5899998754 66 7777777778899999998763   66677888999999998888755 55 


Q ss_pred             cCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168          293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN  372 (710)
Q Consensus       293 ~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  372 (710)
                      .++..+|.++.+|+.+.+..+..            .+...+|..+..|+.+.+.++ +..+...+|.+ ..|+.+.+..+
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~~~------------~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~  192 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEGVT------------SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK  192 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTCC------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred             eehhhhhhhhcccccccccceee------------eecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence            78888888899999988864322            144567888888988888665 44455666654 56888888754


Q ss_pred             cCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEE
Q 005168          373 NISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLL  451 (710)
Q Consensus       373 ~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (710)
                      - ..+...+|. +..+................-...+.........+.....+..+.+.. .++.+...+|.++..|+.+
T Consensus       193 ~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i  270 (394)
T 4gt6_A          193 V-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASV  270 (394)
T ss_dssp             C-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEE
T ss_pred             c-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEE
Confidence            3 334455555 666666655443322110000000000000000011123344444432 3444556788999999999


Q ss_pred             EccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCc
Q 005168          452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP  531 (710)
Q Consensus       452 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  531 (710)
                      .+.++.. .+...+|.++.                                           .|+.+.+. +.++.+...
T Consensus       271 ~lp~~~~-~I~~~aF~~c~-------------------------------------------~L~~i~l~-~~i~~I~~~  305 (394)
T 4gt6_A          271 KMPDSVV-SIGTGAFMNCP-------------------------------------------ALQDIEFS-SRITELPES  305 (394)
T ss_dssp             ECCTTCC-EECTTTTTTCT-------------------------------------------TCCEEECC-TTCCEECTT
T ss_pred             ecccccc-eecCccccccc-------------------------------------------ccccccCC-CcccccCce
Confidence            9876543 34455565543                                           78888886 456667778


Q ss_pred             cccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168          532 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      +|.++.+|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++...
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            8999999999999864 78888899999999999999765 77677789999999999999988643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=7.8e-13  Score=121.85  Aligned_cols=110  Identities=24%  Similarity=0.234  Sum_probs=99.9

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      ..+.+++++|.++. +|..+  .++|++|+|++|.|+++.++.|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46789999999996 55544  3899999999999999999999999999999999999998888888999999999999


Q ss_pred             CCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +|.+....+..+..+..++.+.+.+|++.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998877778889999999999999999975

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=8e-15  Score=139.25  Aligned_cols=88  Identities=27%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-cccccCCCCCEEe
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFS  591 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~l~~L~~L~  591 (710)
                      ++|+.|++++|.++ .+|..+..+++|++|+|++|+++++  ..+..+++|+.|++++|+++...+ +.+..+++|+.|+
T Consensus        70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            35666666666665 3445555556666666666666654  246666666666666666664322 3556666666666


Q ss_pred             ccCCccccccCC
Q 005168          592 VAYNNLSGEILE  603 (710)
Q Consensus       592 l~~N~l~~~~~~  603 (710)
                      +++|++.+.+|.
T Consensus       147 l~~N~l~~~~~~  158 (198)
T 1ds9_A          147 LAGNPLYNDYKE  158 (198)
T ss_dssp             ECSCHHHHHHHT
T ss_pred             ecCCcccccccc
Confidence            666666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=9.6e-15  Score=138.70  Aligned_cols=137  Identities=23%  Similarity=0.308  Sum_probs=114.2

Q ss_pred             cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE  492 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (710)
                      .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..                        
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~------------------------   91 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------   91 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH------------------------
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc------------------------
Confidence            345588899999999999999996 55 7889999999999999987 44443332                        


Q ss_pred             CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCC
Q 005168          493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYN  571 (710)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N  571 (710)
                                         +++|+.|++++|.+++. | .+..+++|++|++++|.++++.+ +.+..+++|++|++++|
T Consensus        92 -------------------~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           92 -------------------ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             -------------------HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             -------------------CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence                               45899999999999963 4 68899999999999999998754 67899999999999999


Q ss_pred             cCcccCCcc----------cccCCCCCEEeccCCcccc
Q 005168          572 KLNGKIPHQ----------LVELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       572 ~i~~~~~~~----------l~~l~~L~~L~l~~N~l~~  599 (710)
                      ++.+..|..          +..+++|+.||  +|+++.
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            998766543          78899999987  777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=6.7e-13  Score=138.08  Aligned_cols=113  Identities=18%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             ccccEEECcC-CcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEe
Q 005168          513 SLLSGLYLSC-NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS  591 (710)
Q Consensus       513 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~  591 (710)
                      ++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3899999996 999998889999999999999999999999999999999999999999999977777777666 99999


Q ss_pred             ccCCccccccC-CCccccccCCcccccCCCCCCCCC
Q 005168          592 VAYNNLSGEIL-EWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       592 l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +.+|+|.|.|. .|+..+.......+..+.+.|..|
T Consensus       110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            99999999885 444444433344445566677554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.3e-12  Score=119.02  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=97.9

Q ss_pred             ccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccC
Q 005168          515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY  594 (710)
Q Consensus       515 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~  594 (710)
                      -+.+++++|.++. +|..+.  ++|++|+|++|.++++.|+.|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4689999999984 555553  8999999999999999999999999999999999999987777789999999999999


Q ss_pred             CccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          595 NNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       595 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      |.+....+..+..+..++.+.+.+|++.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99998777668889999999999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=3.8e-10  Score=118.70  Aligned_cols=142  Identities=17%  Similarity=0.195  Sum_probs=67.0

Q ss_pred             CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168          224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV  303 (710)
Q Consensus       224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  303 (710)
                      .+..+.+++.+.+..+ +. .++...+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.++.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred             ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence            3444444555444322 22 333333333445555555443 33344445555555555555432 33 45555555555


Q ss_pred             CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC
Q 005168          304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH  383 (710)
Q Consensus       304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  383 (710)
                      +|+.+.+.++.+..           +...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus       287 ~L~~i~l~~~~i~~-----------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          287 NLTKVVMDNSAIET-----------LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             TCCEEEECCTTCCE-----------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             ccccccccccccce-----------ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            55555544433332           33445555555555555432 33344455666666666555433 4445555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=7.2e-10  Score=116.56  Aligned_cols=68  Identities=10%  Similarity=0.127  Sum_probs=35.6

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE  583 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~  583 (710)
                      +|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            5555555555555444555555556666655433 44455555555555655555433 33333444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=4.7e-11  Score=124.09  Aligned_cols=108  Identities=16%  Similarity=0.224  Sum_probs=96.6

Q ss_pred             cEEECcCC-cCCCCCCccccccCCCCEEeCCC-ccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          516 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSY-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       516 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      ..++++++ .+++ +|. +..+++|++|+|++ |.+++++++.|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788888 8885 666 99999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      +|.++...+..+..+. +..+.+.+|++.|+|.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999987666555544 8888999999999985

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.3e-12  Score=136.27  Aligned_cols=68  Identities=22%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             cccEEECcCCcCCCC----CCccccccCCCCEEeCCCccCCCCC----chhhcCCccCCEEeCcCCcCcccCCccc
Q 005168          514 LLSGLYLSCNKLIGH----IPPQIGNLTRIQTLNLSYNNLTGLI----PSTFSNLKHIESLDLSYNKLNGKIPHQL  581 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~i~~~~~~~l  581 (710)
                      +|++|+|++|.+.+.    ++..+...++|++|+|++|.|+...    +.++...++|++|+|++|.|+......+
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            444455555544321    1234455566677777777666432    2334445667777777777664333333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=4.1e-12  Score=132.48  Aligned_cols=164  Identities=16%  Similarity=0.111  Sum_probs=87.5

Q ss_pred             CCCcEEEccCCcccccCccCc----c-CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccC-----
Q 005168          205 TKLATLFLVNDSLAGPFWLPI----H-SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF-----  274 (710)
Q Consensus       205 ~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f-----  274 (710)
                      +.|+.|++++|.+.......+    . ..++|++|++++|.++......+...+++|+.|+|++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            445555555555443222211    1 225666777777766533233333345567777777777654333332     


Q ss_pred             cCCCCCCEEeccCCccCCcCCh----hhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcc
Q 005168          275 GNMKFLQLLDLSNNQLTGEIPE----HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL  350 (710)
Q Consensus       275 ~~l~~L~~L~Ls~n~l~~~i~~----~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  350 (710)
                      ...++|++|+|++|.++ ....    ..+..+++|++|+|++|.+...      . ...++..+...++|++|+|++|.+
T Consensus       152 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~------g-~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLT-AAGVAVLMEGLAGNTSVTHLSLLHTGLGDE------G-LELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             STTCCCCEEECCSSCCH-HHHHHHHHHHHHTCSSCCEEECTTSSCHHH------H-HHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             hcCCccceeeCCCCCCC-hHHHHHHHHHHhcCCCcCEEeCCCCCCCcH------H-HHHHHHHHhcCCCcCeEECCCCCC
Confidence            23566777777777765 2111    1123466677777776665420      0 001233455566777777777776


Q ss_pred             ccc----cchhhcCCCCCCEEECCCCcCcc
Q 005168          351 EGP----IPVEFCQLYSLQILDISDNNISG  376 (710)
Q Consensus       351 ~~~----~~~~~~~l~~L~~L~ls~n~i~~  376 (710)
                      ++.    ++..+...++|++|++++|.+..
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            643    23334455677777777776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=4.3e-08  Score=101.13  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             ccCCCCCCEEEccCCcCc---------ccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCC
Q 005168          176 LYHQHDLEYVRLSHIKMN---------GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIP  246 (710)
Q Consensus       176 l~~~~~L~~L~ls~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  246 (710)
                      +..+++|+.|.+......         +.+. .+...+|+|++|.+.++.-.. .+ .+ .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHH
Confidence            334567777777543221         1122 233567788888887663111 11 13 26778888877776652222


Q ss_pred             hhhh-hcCCCccEEEccCC--cCccc-----CCccC--cCCCCCCEEeccCCccCCcCChhhhc--CCCCCcEEEccCCC
Q 005168          247 VEIG-DVLPSLYVFNISMN--ALDGS-----IPSSF--GNMKFLQLLDLSNNQLTGEIPEHLAV--GCVNLQFLMLSNNS  314 (710)
Q Consensus       247 ~~~~-~~~~~L~~L~L~~n--~i~~~-----~~~~f--~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~  314 (710)
                      ..+. ..+|+|+.|+|+.+  ...+.     +...+  ..+++|++|+|++|.+.+..+..++.  .+++|++|+|+.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            2222 13677777777531  11100     00111  13556666666666554222222221  24455555555544


Q ss_pred             Cc
Q 005168          315 LK  316 (710)
Q Consensus       315 l~  316 (710)
                      +.
T Consensus       291 L~  292 (362)
T 2ra8_A          291 LT  292 (362)
T ss_dssp             CB
T ss_pred             CC
Confidence            43

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=1.4e-08  Score=104.72  Aligned_cols=63  Identities=19%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             cccccEEECcCCcCCCCCCcccc---ccCCCCEEeCCCccCCCCC----chhhcCCccCCEEeCcCCcCc
Q 005168          512 LSLLSGLYLSCNKLIGHIPPQIG---NLTRIQTLNLSYNNLTGLI----PSTFSNLKHIESLDLSYNKLN  574 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~i~  574 (710)
                      +++|+.|+|++|.+....+..+.   .+++|++|+|+.|.+++..    +..+..+++|+.|+|++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34556666655555432222221   3556666666666665431    222344566666666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=1.1e-06  Score=81.61  Aligned_cols=111  Identities=15%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             chhhccCCCCCEEECCCC-ccccc----cChhhhcCCCCCCEEeCCCCCCC------------CcccccEEecCCCccee
Q 005168           14 LSSLTHLSSLRSLNLNGN-SLEGS----IDVKEFDSLRDLEELDIGENKID------------KFVVSKELYLDDTGFKG   76 (710)
Q Consensus        14 ~~~~~~l~~L~~L~Ls~n-~i~~~----i~~~~f~~l~~L~~L~Ls~n~l~------------~l~~l~~L~L~~~~~~~   76 (710)
                      ...+...+.|++|+|++| .+...    +. .++...++|++|+|++|.|.            ..+.|++|+|++|.+..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            345667888888888888 77521    22 45667788888888888776            22344455555554442


Q ss_pred             e----cCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEc--ccccccccc---CcccccCCCCCcEEEccCCcccc
Q 005168           77 T----LDIREFDSFNNLEVLDMSYNKIDNLVVPQELRL--SDNHFRIPI---SLEPLFNHSRLKIFHAKNNQMNA  142 (710)
Q Consensus        77 ~----i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L--~~~~l~~~~---~~~~l~~l~~L~~L~L~~n~~~~  142 (710)
                      .    +.. ++...+                .|++|+|  ++|.+....   -...+...+.|+.|++++|.+..
T Consensus       108 ~g~~~l~~-~L~~n~----------------~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          108 SGILALVE-ALQSNT----------------SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHH-GGGGCS----------------SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHH-HHHhCC----------------CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            2    122 333344                4555555  445444211   11234556778888888887653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.19  E-value=2.4e-07  Score=86.01  Aligned_cols=64  Identities=17%  Similarity=0.254  Sum_probs=36.0

Q ss_pred             ccCCCCEEeCCCccCCCC----CchhhcCCccCCEEeC--cCCcCccc----CCcccccCCCCCEEeccCCccc
Q 005168          535 NLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDL--SYNKLNGK----IPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       535 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~i~~~----~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      ..++|++|+|++|.|+..    ...++...++|++|+|  ++|.|...    +.+.+...++|+.|++++|.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            345556666666655532    2334455556666666  56666532    2334455567777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.8e-06  Score=84.27  Aligned_cols=64  Identities=31%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             ccCCCCEEeCCCccCCCCC--chhhcCCccCCEEeCcCCcCcccCCcccccCC--CCCEEeccCCccccc
Q 005168          535 NLTRIQTLNLSYNNLTGLI--PSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLEVFSVAYNNLSGE  600 (710)
Q Consensus       535 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~--~L~~L~l~~N~l~~~  600 (710)
                      ++++|+.|+|++|+|+++.  ++.+..+++|+.|+|++|+|++.  +.+..++  +|+.|++++|++.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence            3445555555555555432  23444455555555555555533  1222222  555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.11  E-value=4.3e-06  Score=72.17  Aligned_cols=96  Identities=16%  Similarity=0.078  Sum_probs=63.4

Q ss_pred             CEEeCCCccCC--CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC-CCccccccCCcccc
Q 005168          540 QTLNLSYNNLT--GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EWTAQFATFNKSSY  616 (710)
Q Consensus       540 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~  616 (710)
                      ..++-+++.++  .++ ..+.  ++|++|+|++|+|+.+.++.|..+++|+.|+|++|||.|+|. .|+..|..-.....
T Consensus        11 ~~v~Cs~~~L~~~~vP-~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~   87 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLP-TAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA   87 (130)
T ss_dssp             TEEECCSSCCCTTTSC-SCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred             CEEEeCCCCCccccCC-CCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence            36777777776  443 2232  468999999999997777888999999999999999999885 23322221111001


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168          617 EGNTFLCGLPLPICRSPATMSEASIGNER  645 (710)
Q Consensus       617 ~~n~~~c~~~~~~c~~~~~~~~~~~~~~~  645 (710)
                      ..       ....|..|..+++..+....
T Consensus        88 ~~-------~~~~C~~P~~l~g~~l~~l~  109 (130)
T 3rfe_A           88 PY-------RDLRCVAPPALRGRLLPYLA  109 (130)
T ss_dssp             GG-------TTCBCCBSTTTTTCBGGGCC
T ss_pred             cc-------cCcEeCcChHHcCCCcccCC
Confidence            01       11258888888877655444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=1.3e-06  Score=85.28  Aligned_cols=90  Identities=22%  Similarity=0.264  Sum_probs=58.5

Q ss_pred             eecCCCCCCCccch----hhccCCCCCEEECCCCcccc--ccChhhhcCCCCCCEEeCCCCCCCCc------c--cccEE
Q 005168            2 LNLSGNSFNNTILS----SLTHLSSLRSLNLNGNSLEG--SIDVKEFDSLRDLEELDIGENKIDKF------V--VSKEL   67 (710)
Q Consensus         2 L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~--~i~~~~f~~l~~L~~L~Ls~n~l~~l------~--~l~~L   67 (710)
                      ++++.|+.. ..+.    ...++++|+.|+|++|.+++  .++ ..+..+++|++|+|++|+|+.+      .  +|++|
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEE
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceE
Confidence            455666433 2222    22578999999999999884  333 5667899999999999988732      2  55666


Q ss_pred             ecCCCcceeecCH------HhhcCCCCCCEEE
Q 005168           68 YLDDTGFKGTLDI------REFDSFNNLEVLD   93 (710)
Q Consensus        68 ~L~~~~~~~~i~~------~~~~~l~~L~~L~   93 (710)
                      +|++|.+.+.+|.      ..+..+|+|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            6666666554431      1355566666555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=7e-06  Score=74.08  Aligned_cols=86  Identities=9%  Similarity=0.046  Sum_probs=68.8

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCC----ccCCEEeCcCCc-CcccCCcccccCCCC
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL  587 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~~~~l~~l~~L  587 (710)
                      .|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            79999999999887666678899999999999995 776544556554    479999999985 775444557789999


Q ss_pred             CEEeccCCcccc
Q 005168          588 EVFSVAYNNLSG  599 (710)
Q Consensus       588 ~~L~l~~N~l~~  599 (710)
                      +.|++++++-.+
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            999999997443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.59  E-value=2.9e-05  Score=70.07  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCC-CC--------Cc----ccccEEecCCCc-ceeecCHHhhcC
Q 005168           20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK-ID--------KF----VVSKELYLDDTG-FKGTLDIREFDS   85 (710)
Q Consensus        20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~-l~--------~l----~~l~~L~L~~~~-~~~~i~~~~~~~   85 (710)
                      -.+|++||++++.|+.. .-..+..+++|++|+|++|. ++        .+    ++|++|+|++|. +++.--. .+.+
T Consensus        60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHH  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGG
T ss_pred             CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhc
Confidence            35789999999988733 22567889999999999985 55        32    368888888875 6644333 6778


Q ss_pred             CCCCCEEEccCCc
Q 005168           86 FNNLEVLDMSYNK   98 (710)
Q Consensus        86 l~~L~~L~Ls~n~   98 (710)
                      +++|++|+++++.
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            8888888888874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.0027  Score=54.39  Aligned_cols=58  Identities=22%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             cEEECcCCcCC-CCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          516 SGLYLSCNKLI-GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       516 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888999887 23454332  469999999999999999999999999999999998864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.60  E-value=0.00078  Score=61.92  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=35.7

Q ss_pred             cccCCCCEEeCCCccCCCC----CchhhcCCccCCEEeCcCCcC---cc----cCCcccccCCCCCEEeccCCccc
Q 005168          534 GNLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKL---NG----KIPHQLVELKTLEVFSVAYNNLS  598 (710)
Q Consensus       534 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i---~~----~~~~~l~~l~~L~~L~l~~N~l~  598 (710)
                      ..-+.|++|+|++|.|...    +.+++..-+.|++|+|++|..   ..    .+-+.+...++|+.|+++.|...
T Consensus        95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            3445566666666666532    223444455677777765432   21    12344555677777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.56  E-value=0.005  Score=56.54  Aligned_cols=109  Identities=13%  Similarity=0.102  Sum_probs=59.6

Q ss_pred             ccCCCCCEEECCCC-cccc----ccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEE
Q 005168           18 THLSSLRSLNLNGN-SLEG----SIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVL   92 (710)
Q Consensus        18 ~~l~~L~~L~Ls~n-~i~~----~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L   92 (710)
                      ..-+.|++|+|++| .|..    .+- .++..-..|+.|+|++|.|..-           .. ..|.. ++..-+.|++|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~-----------ga-~alA~-aL~~N~tL~~L  103 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDS-----------EA-RGLIE-LIETSPSLRVL  103 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHH-----------HH-TTHHH-HHHHCSSCCEE
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChH-----------HH-HHHHH-HHhcCCccCeE
Confidence            45567888888775 6542    122 4566677788888887776500           00 01222 44444556666


Q ss_pred             EccCCcCCCC------------CCCcEEEcccc---ccccc---cCcccccCCCCCcEEEccCCcc
Q 005168           93 DMSYNKIDNL------------VVPQELRLSDN---HFRIP---ISLEPLFNHSRLKIFHAKNNQM  140 (710)
Q Consensus        93 ~Ls~n~l~~~------------~~L~~L~L~~~---~l~~~---~~~~~l~~l~~L~~L~L~~n~~  140 (710)
                      +|++|.|..-            +.|++|+|+++   .+...   .-...+..-+.|+.|+++.+.+
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            6666655432            55666666643   22211   0112345557788888877654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.32  E-value=0.98  Score=36.10  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=42.8

Q ss_pred             CCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCC
Q 005168            6 GNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN   56 (710)
Q Consensus         6 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n   56 (710)
                      +..++.|...+|.+|..|+.+.+..+ ++ .|...+|.++.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence            46788899999999999999999887 45 577799999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	710
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.7 bits (221), Expect = 9e-20
 Identities = 61/377 (16%), Positives = 124/377 (32%), Gaps = 33/377 (8%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
              +   N+   +     D + +L    + + ++DG        +  L  ++ SNNQLT 
Sbjct: 26  KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTD 80

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLY--------LTNNSLSGNIPGWLGNLTWLIHII 344
             P         L  ++++NN + +                 +             ++ +
Sbjct: 81  ITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNM------LH 398
              ++    I          Q+   +       L +      ++      +       L 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 399 RQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSL 458
                  + N ++   P  I   + L  L L  N L+      L  L  L  LDL+NN +
Sbjct: 198 NLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 459 HGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518
              + P    T L E    ++ +     ++        +     +  I     L  L+ L
Sbjct: 254 SN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578
            L  N +    P  + +LT++Q L  + N ++    S+ +NL +I  L   +N+++   P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 579 HQLVELKTLEVFSVAYN 595
             L  L  +    +   
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 63/412 (15%), Positives = 111/412 (26%), Gaps = 52/412 (12%)

Query: 56  NKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELR 109
           N+I       E      G     D       + +  L      I      + L    ++ 
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 72

Query: 110 LSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDG 169
            S+N       L+ L     + + + +   +      ++      F  Q   +       
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 170 VTFPKF-----LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP 224
                      +     L  +        G     L           L   S        
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284
           +     L  L  +NN I    P+ I   L  L +    +         +  ++  L  LD
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 247

Query: 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHII 344
           L+NNQ++   P     G   L  L L  N                I              
Sbjct: 248 LANNQISNLAPLS---GLTKLTELKLGAN---------------QISNISPLAGLTALTN 289

Query: 345 MPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRD 404
           +  N  +         L +L  L +  NNIS   P       ++++  + N +       
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKV------- 341

Query: 405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456
                   S    +  L+ ++ L  GHN +    P  L  L ++  L L++ 
Sbjct: 342 --------SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 63/371 (16%), Positives = 119/371 (32%), Gaps = 36/371 (9%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L        +  +  + +L++L  +N + N L     +K    L D+   +     I   
Sbjct: 49  LQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPL 106

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
                L           DI    +  NL  L++S N I ++     L             
Sbjct: 107 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN--- 163

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
                     + +    +     +   S  +   +L +L    +  + ++    L    +
Sbjct: 164 ---QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 220

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241
           L+ + L+  ++        L + T L  L L N+ ++     P+    +L  L +  N I
Sbjct: 221 LDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQI 275

Query: 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 301
               P+     L +L    ++ N       S   N+K L  L L  N ++   P      
Sbjct: 276 SNISPLAG---LTALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDISPVS---S 327

Query: 302 CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL 361
              LQ L  +NN + +                L NLT +  +    N +    P     L
Sbjct: 328 LTKLQRLFFANNKVSD-------------VSSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 362 YSLQILDISDN 372
             +  L ++D 
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
            L+L+GN      + +L  L++L  L+L  N +     +     L +L+      + I  
Sbjct: 223 ELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI------DNLVVPQELRLSDNH 114
                 L   +       DI    +  NL  L + +N I       +L   Q L  ++N 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340

Query: 115 FRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS 164
                SL  L   + +    A +NQ++ ++T   +LT    ++  L L+ 
Sbjct: 341 VSDVSSLANL---TNINWLSAGHNQIS-DLTPLANLT----RITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 5e-17
 Identities = 37/273 (13%), Positives = 74/273 (27%), Gaps = 40/273 (14%)

Query: 319 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378
           L L NN ++    G   NL  L  +I+  N +    P  F  L  L+ L +S N +    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 379 PSCFHP-----------LSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHL 427
                              + +   +       ++   +    +G        + +LS++
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 428 ILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEI 487
            +   N+     +       L  L L  N +                   S +     + 
Sbjct: 156 RIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 488 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547
                 P                            N  +  +P  + +   IQ + L  N
Sbjct: 213 GSLANTPHLRE--------------------LHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 548 NLTGLIPSTF------SNLKHIESLDLSYNKLN 574
           N++ +  + F      +       + L  N + 
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 7e-16
 Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 35/272 (12%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282
           +P        +LD+ NN I      +  + L +L+   +  N +    P +F  +  L+ 
Sbjct: 25  VPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNI 330
           L LS NQL  E+PE +      L+        +++             L       SG  
Sbjct: 84  LYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 331 PGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 390
            G    +  L +I + + ++     +      SL  L +  N I+    +    L+    
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 391 -----------HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG--- 436
                                L+     N     +P  + +   +  + L +NN+     
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 437 ---EVPVQLCELNQLQLLDLSNNSL-HGSIPP 464
                P    +      + L +N + +  I P
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 6e-11
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 7/205 (3%)

Query: 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463
           DL  N +          L  L  LIL +N +    P     L +L+ L LS N L     
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

Query: 464 PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQG----KVLSLLSGLY 519
                      + N  +   K   +   +    +  T  +          + +  LS + 
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156

Query: 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579
           ++   +   IP   G    +  L+L  N +T +  ++   L ++  L LS+N ++     
Sbjct: 157 IADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 580 QLVELKTLEVFSVAYNNLSGEILEW 604
            L     L    +  N L       
Sbjct: 214 SLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 516 SGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
               + C+ L +  +P  +        L+L  N +T +    F NLK++ +L L  NK++
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 575 GKIPHQLVELKTLEVFSVAYNNLSG 599
              P     L  LE   ++ N L  
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 8/193 (4%)

Query: 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577
           L L  NK+         NL  + TL L  N ++ + P  F+ L  +E L LS N+L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 578 PHQLVELKTLEVFSVAYNNLSGEILEWTAQFATF------NKSSYEGNTFLCGLPLPICR 631
                 L+ L V       +   +     Q           KSS   N    G+      
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 632 SPATMSEASIGNERDDNL--IDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVE 689
             A  +  +I      +L  + +D   IT   +  +     +  L ++            
Sbjct: 156 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 690 MWITTCYYFVVDN 702
                     ++N
Sbjct: 216 ANTPHLRELHLNN 228

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 47/301 (15%), Positives = 91/301 (30%), Gaps = 51/301 (16%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
                L+L  N +   I   +F +L++L  L +  NKI                   +  
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-----------------KISP 72

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
             F     LE L +S N++  L                    P      L+      N++
Sbjct: 73  GAFAPLVKLERLYLSKNQLKEL--------------------PEKMPKTLQELRVHENEI 112

Query: 141 NAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL 200
                   +       ++  +                    L Y+R++   +    P  L
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTNIT-TIPQGL 169

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
             +   L  L L  + +       +     L  L +S N+I            P L   +
Sbjct: 170 PPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELH 225

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG-----EIPEHLAVGCVNLQFLMLSNNSL 315
           ++ N L   +P    + K++Q++ L NN ++        P        +   + L +N +
Sbjct: 226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 316 K 316
           +
Sbjct: 285 Q 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 47/293 (16%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           +L+L  N           +L +L +L L  N +        F  L  LE L + +N++ +
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKE 93

Query: 61  FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 120
                         +      +    +  E+  +  +  + L     + L  N  +    
Sbjct: 94  L------------PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 121 LEPLF-NHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQ 179
               F    +L      +  +                L  L L  +          L   
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKITK-VDAASLKGL 194

Query: 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
           ++L  + LS   ++       L N   L  L L N+ L       +  HK + ++ + NN
Sbjct: 195 NNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNN 252

Query: 240 NIRG-----HIPVEIGDVLPSLYVFNISMNALDGS--IPSSFGNMKFLQLLDL 285
           NI         P        S    ++  N +      PS+F  +     + L
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 57/302 (18%), Positives = 98/302 (32%), Gaps = 42/302 (13%)

Query: 335 GNLTWLIHIIMPENHLEG--PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL 392
                + ++ +   +L    PIP     L  L  L I   N   +L     P   +   L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIPPAIAKLTQL 103

Query: 393 SKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 452
               +        ++  ++G+IPD++ ++  L  L   +N L G +P  +  L  L  + 
Sbjct: 104 HYLYI--------THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 453 LSNNSLHGSIPP----CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 508
              N + G+IP          T      N  +       +                    
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 509 GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 568
                  +         +     ++G    +  L+L  N + G +P   + LK + SL++
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 569 SYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP 628
           S+N L G+IP                                F+ S+Y  N  LCG PLP
Sbjct: 276 SFNNLCGEIPQ-------------------------GGNLQRFDVSAYANNKCLCGSPLP 310

Query: 629 IC 630
            C
Sbjct: 311 AC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 69/292 (23%), Positives = 107/292 (36%), Gaps = 44/292 (15%)

Query: 283 LDLSNNQLTGEIPEHLAVG-CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI 341
           LDLS   L    P   ++     L FL +             N+L G IP  +  LT L 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI----------NNLVGPIPPAIAKLTQLH 104

Query: 342 HIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQL 401
           ++ +   ++ G IP    Q+ +L  LD S N +SG+LP     L                
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI---------- 154

Query: 402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461
                 N ++G+IPD  G  S+L   +    N              L  +DLS N L G 
Sbjct: 155 --TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 462 IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLS 521
               F +    +  +                             + +  +   L+GL L 
Sbjct: 213 ASVLFGSDKNTQKIHL--------------------AKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573
            N++ G +P  +  L  + +LN+S+NNL G IP    NL+  +    + NK 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 9e-15
 Identities = 57/267 (21%), Positives = 93/267 (34%), Gaps = 30/267 (11%)

Query: 227 SHKRLGILDISNNNIRG--HIPVEIGDVLPSLYVFNISMNA-LDGSIPSSFGNMKFLQLL 283
              R+  LD+S  N+     IP  + + LP L    I     L G IP +   +  L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNN------------SLKEGLYLTNNSLSGNIP 331
            +++  ++G IP+ L+     +      N                 G+    N +SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 391
              G+ + L   +    +             +L  +D+S N + G     F      Q  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 392 LSKNMLHRQ-----------LKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 440
                                  DL  N + G++P  + +L  L  L +  NNL GE+P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 441 QLCELNQLQLLDLSNNSLH--GSIPPC 465
           Q   L +  +   +NN       +P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 49/282 (17%), Positives = 93/282 (32%), Gaps = 18/282 (6%)

Query: 15  SSLTHLSSLRSLNLNGNSLEGSIDV-KEFDSLRDLEELDIGENKIDKFVVSKELYLDDTG 73
            + T    + +L+L+G +L     +     +L  L  L IG         +    +    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAI 97

Query: 74  FKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIF 133
            K T     + +  N+      +      +V  +   +     +P     + +   L   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGI 154

Query: 134 HAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 193
               N+++  I +S+           L  S +        K      +L    +   +  
Sbjct: 155 TFDGNRISGAIPDSY------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 194 GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253
            E    +L  + K      +  +        +   K L  LD+ NN I G +P  +   L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-L 267

Query: 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295
             L+  N+S N L G IP   GN++   +   +NN+     P
Sbjct: 268 KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 3   NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK 57
           +L  N    T+   LT L  L SLN++ N+L G I   +  +L+  +      NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNK 302

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 9e-12
 Identities = 44/307 (14%), Positives = 75/307 (24%), Gaps = 48/307 (15%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328
           ++P         Q + L  N+++                   +  +L      +N     
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFR-----------ACRNLTILWLHSNVLARI 71

Query: 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 388
           +   + G        +     L    P  F  L  L  L +    +    P  F      
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR----- 126

Query: 389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
                   L       L  N L     D   +L  L+HL L  N +          L+ L
Sbjct: 127 -------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 449 QLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 508
             L L  N +    P  F +     +    ++                            
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA------------- 226

Query: 509 GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 568
                 L  L L+ N  +            +Q    S + +   +P   +         L
Sbjct: 227 ------LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRL 276

Query: 569 SYNKLNG 575
           + N L G
Sbjct: 277 AANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 49/263 (18%), Positives = 80/263 (30%), Gaps = 30/263 (11%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282
           +P+        + +  N I   +P        +L +  +  N L     ++F  +  L+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGN 329
           LDLS+N     +      G   L  L L    L+E              LYL +N+L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 330 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 389
                 +L  L H+ +  N +       F  L+SL  L +  N ++   P  F  L    
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 390 VHLSKNMLHRQLKR------------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE 437
                      L               L+ N             + L       + +   
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCS 263

Query: 438 VPVQLCELNQLQLLDLSNNSLHG 460
           +P     L    L  L+ N L G
Sbjct: 264 LPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 45/221 (20%), Positives = 67/221 (30%), Gaps = 8/221 (3%)

Query: 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY 472
           ++P  I   SQ   + L  N +             L +L L +N L       F    L 
Sbjct: 25  AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 473 ES------YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 526
           E           S     F     +     D            + L+ L  LYL  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 527 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 586
                   +L  +  L L  N ++ +    F  L  ++ L L  N++    PH   +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 587 LEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627
           L    +  NNLS    E  A            N ++C    
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 38/291 (13%)

Query: 86  FNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145
               + + +  N+I ++                 S     N + L +      +++A   
Sbjct: 31  PAASQRIFLHGNRISHV--------------PAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT 205
              +L        +  L          P   +    L  + L    +    P        
Sbjct: 77  TGLALLEQLDLSDNAQL------RSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLA 129

Query: 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA 265
            L  L+L +++L             L  L +  N I   +P      L SL    +  N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNR 188

Query: 266 LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNS 325
           +    P +F ++  L  L L  N                L    L+     + L L +N 
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANN------------LSALPTEALAPLRALQYLRLNDNP 236

Query: 326 LSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376
              +         WL       + +   +P     L    +  ++ N++ G
Sbjct: 237 WVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 20/272 (7%)

Query: 21  SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80
           ++ + + L+GN +   +    F + R+L         I     +    +D   F G   +
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLT--------ILWLHSNVLARIDAAAFTGLALL 82

Query: 81  REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQM 140
            + D  +N ++  +       L     L L        +        + L+  + ++N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 141 NAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL 200
            A   ++         L  L L  +    V    F    H L+ + L   ++    P+  
Sbjct: 142 QALPDDTFR---DLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260
            +    +      N+  A P    +   + L  L +++N            +   L  F 
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFR 254

Query: 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
            S + +  S+P          L  L+ N L G
Sbjct: 255 GSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 6/191 (3%)

Query: 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328
           ++P      K   +L LS N L       L      L  L L    L +           
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVDGTLP-VL 79

Query: 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 388
                  N    + ++         + V F +L SL +  +        L    + L   
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448
              L       +     + N L       +  L  L  L+L  N+L   +P      + L
Sbjct: 140 PPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 449 QLLDLSNNSLH 459
               L  N   
Sbjct: 198 PFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 6/203 (2%)

Query: 397 LHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456
           +   L+ +     L  ++P  +      + L L  N L       L    +L  L+L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 457 SLHGSIPPCF--DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL 514
            L             TL  S+N   SL    +    +      F       +   + L  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           L  LYL  N+L    P  +    +++ L+L+ NNLT L     + L+++++L L  N L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 575 GKIPHQLVELKTLEVFSVAYNNL 597
             IP        L    +  N  
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 42/222 (18%), Positives = 66/222 (29%), Gaps = 22/222 (9%)

Query: 357 EFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 416
           E  ++ S   ++    N++ +LP    P     +              LS NLL      
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL-PKDTTIL-------------HLSENLLYTFSLA 49

Query: 417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYN 476
            +   ++L+ L L  +  E         L  L  LDLS+N L            L     
Sbjct: 50  TLMPYTRLTQLNL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 477 NSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY----LSCNKLIGHIPPQ 532
           + + L      +    G   +   K          L   +       L+ N L       
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 533 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           +  L  + TL L  N+L   IP  F     +    L  N   
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 33/219 (15%), Positives = 58/219 (26%), Gaps = 17/219 (7%)

Query: 98  KIDNLVVPQELRLSDNHFR-IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ 156
           ++  +    E+     +   +P  L          I H   N +      +     P  +
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLM---PYTR 56

Query: 157 LQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS 216
           L  L+L  +    +     L     L+        +              ++   L +  
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 217 LAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN 276
           L     L                N    +P  +    P L   +++ N L          
Sbjct: 117 LGALRGLGELQELY------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 315
           ++ L  L L  N L   IP+    G   L F  L  N  
Sbjct: 171 LENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 27/205 (13%)

Query: 86  FNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145
             +  +L +S N +                    +L P    ++L +  A+  ++  + T
Sbjct: 30  PKDTTILHLSENLLYTF--------------SLATLMPYTRLTQLNLDRAELTKLQVDGT 75

Query: 146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT 205
                T      Q  SL                 + L  + L  ++  GE     L+ N 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA 265
                              + +           NN    +P  + + L +L    +  N+
Sbjct: 136 LK------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 266 LDGSIPSSFGNMKFLQLLDLSNNQL 290
              +IP  F     L    L  N  
Sbjct: 184 -LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 63/324 (19%), Positives = 105/324 (32%), Gaps = 29/324 (8%)

Query: 280 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE----GLYLTNNSLSGNIPGWLG 335
              L+L+N  L+  +PE       +L+ L+ S NSL E       L +  +  N    L 
Sbjct: 40  AHELELNNLGLS-SLPELPP----HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
           +L  L+  +   N+ +     E      L+I+D+ +N++            I   +    
Sbjct: 95  DLPPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 396 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
            L           +   +          LS   +   N   E   +L  L  L  +   N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 515
           N L            L    N  + L E  +   F++  +  F+  +             
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-------- 265

Query: 516 SGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575
                  N     I         ++ LN+S N L   +P+    L+    L  S+N L  
Sbjct: 266 ---LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIASFNHLA- 317

Query: 576 KIPHQLVELKTLEVFSVAYNNLSG 599
           ++P     LK L    V YN L  
Sbjct: 318 EVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 58/338 (17%), Positives = 105/338 (31%), Gaps = 33/338 (9%)

Query: 2   LNLSGNSFNNTILSSLTH-LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK 60
           L L+        LSSL      L SL  + NSL   +     +  + L+ L +  N +  
Sbjct: 43  LELNNLG-----LSSLPELPPHLESLVASCNSLT-ELP----ELPQSLKSLLVDNNNLKA 92

Query: 61  FV-VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPI 119
              +   L            + E  + + L+++D+  N +  L        S        
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGN 149

Query: 120 SLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQ 179
           +        +   F       N  + +   L      + + +        +    FL   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN 239
           +    +  +   +        + +N       L            I S       ++   
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 240 NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
           N   +    + D+ PSL   N+S N L   +P+       L+ L  S N L  E+PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ 324

Query: 300 VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNL 337
               NL+ L +  N L+E           +IP  + +L
Sbjct: 325 ----NLKQLHVEYNPLRE---------FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 51/325 (15%), Positives = 99/325 (30%), Gaps = 31/325 (9%)

Query: 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 314
             +   ++   L  S+P    +   L+ L  S N LT E+PE       +L+ L++ NN+
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQ----SLKSLLVDNNN 89

Query: 315 LKEGLYLTNNSLSGNIPGWLGNLTWLIHI--IMPENHLEGPIPVEFCQLYSLQILDISDN 372
           LK    L        +          +     +    ++     +   L        + N
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 373 NISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHN 432
           N    LP   +   +  ++   N L +     LS   +              +   L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 433 NLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492
             +  +   L +L          ++    +P    + T  +   N  S   +   + +  
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 493 GPQGDFTTKNIAYIYQGKVLSL--------------LSGLYLSCNKLIGHIPPQIGNLTR 538
               +            + L++              L  L  S N L   +P    NL  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL-AEVPELPQNL-- 326

Query: 539 IQTLNLSYNNLTGL--IPSTFSNLK 561
            + L++ YN L     IP +  +L+
Sbjct: 327 -KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 177 YHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
              +  +   L       +    +    ++L       ++ +            L  L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 296
           SNN +      E+  + P L     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 297 HLAVGCVNLQFLMLSN 312
                  +++ L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 48/344 (13%), Positives = 96/344 (27%), Gaps = 36/344 (10%)

Query: 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 314
           SL +  I+      S+ +       ++ + LS N +  E    L+          +++  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--------ENIASKK 59

Query: 315 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI 374
             E    ++             L  L+  ++    L      +                 
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF---------GPTAQ 110

Query: 375 SGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL 434
              +        +E ++L  N L  Q    ++  L   ++         L  +I G N L
Sbjct: 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170

Query: 435 EGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494
           E     +  +  Q      S+  LH               +     L    E+       
Sbjct: 171 ENGSMKEWAKTFQ------SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 224

Query: 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN------LTRIQTLNLSYNN 548
                  + A     K    L  L L+   L       + +         +QTL L YN 
Sbjct: 225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 284

Query: 549 LTG-----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587
           +       L       +  +  L+L+ N+   +    + E++ +
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 42/326 (12%), Positives = 92/326 (28%), Gaps = 29/326 (8%)

Query: 2   LNLSGNSFNN--TILSSLTHLSSLRSLNLNGNSL--EGSIDV-KEFDSLRDLEELDIGEN 56
           L L   +  +  ++ + L    S++ + L+GN++  E +  + +   S +DLE  +  + 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 57  KIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFR 116
              +         D+      L ++       L  + +S N          +     H  
Sbjct: 70  FTGRV-------KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 117 IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL 176
           +                          + +      P   +         G    + K  
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 177 YHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDI 236
                L  V++    +  E                L+ + LA    L +   +      +
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEH------------LLLEGLAYCQELKVLDLQDNTFTHL 230

Query: 237 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSI-PSSFGNMKFLQLLDLSNNQLTGE-- 293
            ++ +   +          L    +S       +   S      LQ L L  N++  +  
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 294 --IPEHLAVGCVNLQFLMLSNNSLKE 317
             +   +     +L FL L+ N   E
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSE 316

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 39/286 (13%), Positives = 75/286 (26%), Gaps = 24/286 (8%)

Query: 185 VRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGH 244
           + L+   ++ +    LL         F    S          S  R+  +D+SN+ I   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGV---IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 245 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL-SNNQLTGEIPEHLAVGCV 303
               I      L   ++    L   I ++      L  L+L   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 363
            L  L LS        ++       +      NL+     +   +               
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSY-NLLNGSIPDWIGELS 422
           L                     +       +    + L   LS    +       +GE+ 
Sbjct: 182 LSD--------------SVMLKNDCFQEFFQLNYLQHL--SLSRCYDIIPETLLELGEIP 225

Query: 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN 468
            L  L +     +G + +       L  L ++ +       P   N
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 31/287 (10%)

Query: 319 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378
           L LT  +L  ++ G L +   +I    P + ++ P+   F     +Q +D+S++ I  S 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV 438
                           +   +     L    L+  I + + + S L  L L   +   E 
Sbjct: 63  LHGIL-----------SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 439 PVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498
            +Q    +  +L +L+ +               + S   +      +  +          
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 499 TTKNIAYIYQGKV--------------LSLLSGLYLS-CNKLIGHIPPQIGNLTRIQTLN 543
                                      L+ L  L LS C  +I     ++G +  ++TL 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 544 LSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 590
           +      G +      L H   L ++ +         +   K  E++
Sbjct: 232 VFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG-LIPS 555
           D T KN+     G++LS     +      +     +  +  R+Q ++LS + +    +  
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 556 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 596
             S    +++L L   +L+  I + L +   L   +++  +
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 38/299 (12%), Positives = 87/299 (29%), Gaps = 37/299 (12%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           L+L+G + +  +   L     + +     + ++  +   E  S   ++ +D+  + I+  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVS 61

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
            +   L                   + L+ L +   ++ + +V    + S        +L
Sbjct: 62  TLHGIL----------------SQCSKLQNLSLEGLRLSDPIVNTLAKNS--------NL 97

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
             L               +   ++    L   N               V        Q +
Sbjct: 98  VRLNLSGCSGFSE---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN-NN 240
           L   R +  K +         N   L     V             ++  L  L +S   +
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY--LQHLSLSRCYD 212

Query: 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
           I     +E+G+ +P+L    +     DG++         L  L ++ +  T      + 
Sbjct: 213 IIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTIG 267

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 17/210 (8%), Positives = 47/210 (22%), Gaps = 3/210 (1%)

Query: 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS 422
           +   L      +       F      +      +    +   +  ++ +         + 
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLE---KIEISQNDVLEVIEADVFSNLPKLHEIRIE 86

Query: 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLD 482
           + ++L+  +      +P     L     +    +                    ++   +
Sbjct: 87  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 146

Query: 483 EKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
               +SF       +       +        L        N L           +    L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572
           ++S   +  L      NLK + +      K
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 11/236 (4%)

Query: 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 292
           +     + +   IP ++     +       +  L      +F     L+ +++S N +  
Sbjct: 12  VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352
            I   +      L  + +   +    +         N+   L + T + H+         
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 353 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML---HRQLKRDLSYNL 409
              +   Q          ++ +  S  S    L+   +    N      +  + +LS N 
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 410 LNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP 464
               +P+ +    S    L +    +       L  L +L+     N      +P 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 27/212 (12%), Positives = 57/212 (26%), Gaps = 11/212 (5%)

Query: 86  FNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKN 137
             N   L     K+              +++ +S N     I  +   N  +L     + 
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 138 NQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP 197
                 I        PN Q   +S +               +  L+     +I       
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 198 NWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLY 257
                 + +   L+L  + +        +  +   +    NNN    +P ++        
Sbjct: 148 FV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPV 204

Query: 258 VFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 289
           + +IS   +         N+K L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 516 SGLYLSCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
           S     C +  +  IP  +        L      L  +    FS    +E +++S N + 
Sbjct: 9   SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 575 GKIPHQ 580
             I   
Sbjct: 67  EVIEAD 72

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 383 HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442
            P  I+Q+          +K +L    +  ++     EL+ +  +I  +++++    +Q 
Sbjct: 10  VPTPIKQIFSDDA-FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ- 65

Query: 443 CELNQLQLLDLSNNSLHGSIP--------------------PCFDNTTLYESYNNSSSLD 482
             L  +  L L+ N L    P                        +    +S +   +  
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 483 EKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542
                   +   +  +   N                    +  I  I P +  LT++Q L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183

Query: 543 NLSYNNLTGLIPSTFSNLKHIESLDLS 569
            LS N+++ L     + LK+++ L+L 
Sbjct: 184 YLSKNHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 21/216 (9%)

Query: 245 IPVEIGDVLP-----SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLA 299
           +P  I  +            N+   ++  ++  +   +  +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 300 VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC 359
               N+  L L+ N L +   L N          LG L    + +   + L+    ++  
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLK-------NLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 360 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 419
            L    I DI+       L S +   +        + L +     L  N ++  +P  + 
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA 175

Query: 420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
            L++L +L L  N++       L  L  L +L+L +
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 29/234 (12%), Positives = 78/234 (33%), Gaps = 25/234 (10%)

Query: 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395
            L   I I   ++++   +      L  +  L      ++ ++    +  ++  + L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 396 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455
            +                    +  L++++ L L  N L+    +   +  +   L  + 
Sbjct: 74  QITDL---------------APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 515
            +    +    +   LY   N    +     ++              ++ +     LS L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQ---ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 516 SGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 569
           + L    NK+    P  + +L  +  ++L  N ++ + P   +N  ++  + L+
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 30/235 (12%)

Query: 84  DSFNNLEVLDMSYNKIDNLVVP------QELRLSDNHFRIPISLEPLFNHSRLKIFHAKN 137
            +  N   +    + + + V          L           ++E +   + L     K+
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 138 NQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP 197
           NQ+       +           L+  +         K +     L+ ++   +       
Sbjct: 73  NQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 198 NWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLY 257
              L   + L  L+L  + +     L   ++ +   +  +  +    +          L 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SKLT 176

Query: 258 VFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312
                 N +    P    ++  L  + L NNQ++   P        NL  + L+N
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 28/229 (12%)

Query: 383 HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442
            P +I  +      L   +K     + +  ++     +L  ++ L      +     VQ 
Sbjct: 5   QPTAINVIFPDPA-LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ- 60

Query: 443 CELNQLQLLDLSNNSLHGS-------------------IPPCFDNTTLYESYNNSSSLDE 483
             LN L  L+L +N +                                     + +S   
Sbjct: 61  -YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 484 KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLN 543
                                      +  L +  YLS           + NL+++ TL 
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 544 LSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 592
              N ++ + P   ++L ++  + L  N+++   P  L     L + ++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 31/213 (14%), Positives = 69/213 (32%), Gaps = 10/213 (4%)

Query: 2   LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF 61
           +    ++  +T+  +   L  + +L+  G  +     ++    L +L  L++ +N+I   
Sbjct: 24  IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDL 78

Query: 62  VVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISL 121
              K L            ++   +   L+ +         +     L    N   + + L
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 122 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD 181
             + N S L                S      N     L+   +  + ++    L    +
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL--SKLTTLKADDNKISDISPLASLPN 196

Query: 182 LEYVRLSHIKMNGEFPNWLLENNTKLATLFLVN 214
           L  V L + +++   P   L N + L  + L N
Sbjct: 197 LIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG----SIPSSFGNMKFLQLLDLSNNQ 289
           LDI    +      E+  +L    V  +    L       I S+      L  L+L +N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 290 LTGEIPEHLAVG----CVNLQFLMLSNN 313
           L       +  G       +Q L L N 
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 7e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 515 LSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTG----LIPSTFSNLKHIESLDLS 569
           +  L + C +L      ++   L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 570 YNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEW 604
            N+L     H +++        +   +L    L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 7e-06
 Identities = 54/429 (12%), Positives = 94/429 (21%), Gaps = 43/429 (10%)

Query: 229 KRLGILDISNNNIRGHIPVEIGDVL---PSLYVFNISMNALDGSIPSSFG-----NMKFL 280
           ++  ++ + +  +      +I   L   P+L   N+  N L                  +
Sbjct: 27  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86

Query: 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340
           Q L L N  LTG     L+     L  L   + S           L   +      L  L
Sbjct: 87  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 146

Query: 341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQ 400
                  +           +           NN             ++        L  +
Sbjct: 147 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 206

Query: 401 LKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG 460
                S N  +           +   L        G   +    L+    L        G
Sbjct: 207 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 266

Query: 461 SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 520
                  +         S             EG +    T          +         
Sbjct: 267 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 326

Query: 521 SCNKLIG--------------------------HIPPQIGNLTRIQTLNLSYNNLTGL-- 552
           +C                                        + ++ L L+  +++    
Sbjct: 327 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 386

Query: 553 --IPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-----LKTLEVFSVAYNNLSGEILEWT 605
             + +T      +  LDLS N L      QLVE        LE   +     S E+ +  
Sbjct: 387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

Query: 606 AQFATFNKS 614
                   S
Sbjct: 447 QALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 55/450 (12%), Positives = 126/450 (28%), Gaps = 18/450 (4%)

Query: 154 NFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL---LENNTKLATL 210
           +  +QSL +         + + L      + VRL    +       +   L  N  LA L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 211 FLVNDSLAGPFWLPI-----HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA 265
            L ++ L       +         ++  L + N  + G     +   L +L        +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 266 LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNS 325
            +    +    +    L      +        L+         +L      + L ++NN 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 326 LSGN-IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHP 384
           ++   +      L      +         +  + C+     +   +         +    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 385 LSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE 444
           + + ++         +L+    +     +           +   L   +L G        
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 445 LNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504
               + L      L          T    S+ +S     +F +   I   + +       
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 505 YIYQGKVLSLLSGLYLSCNKL----IGHIPPQIGNLTRIQTLNLSYNNLTG-----LIPS 555
               G+  S+L  L+L+   +       +   +     ++ L+LS N L       L+ S
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 556 TFSNLKHIESLDLSYNKLNGKIPHQLVELK 585
                  +E L L     + ++  +L  L+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 47/457 (10%), Positives = 105/457 (22%), Gaps = 31/457 (6%)

Query: 22  SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR 81
            ++SL++    L  +   +    L+  + + + +  +            +   K      
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-----------EARCKDISSA- 50

Query: 82  EFDSFNNLEVLDMSYNKIDNLVVP------QELRLSDNHFRIPISLEPLFNHSRLKIFHA 135
                  L  L++  N++ ++ V       Q          +            L     
Sbjct: 51  -LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

Query: 136 KNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE 195
               +       + L     QL    L                        L+ +     
Sbjct: 110 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 169

Query: 196 FPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS 255
               L  +N  +    +                 +L    ++++N R    +        
Sbjct: 170 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 229

Query: 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 315
                 +     G      G +     L        G   +     C  L+         
Sbjct: 230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 289

Query: 316 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375
             G  L +          L     L  + +            F  + +     +     +
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349

Query: 376 GSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG----SIPDWIGELSQLSHLILGH 431
             L         + +    ++L       L+   ++     S+   +     L  L L +
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLR---VLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406

Query: 432 NNLEGEVPVQLCE-----LNQLQLLDLSNNSLHGSIP 463
           N L     +QL E        L+ L L +      + 
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 1   MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID- 59
           +L+L+      T+L  L  L  +  L+L+ N L          +LR LE L   +N ++ 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALEN 57

Query: 60  -----KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 99
                     +EL L +   + +  I+   S   L +L++  N +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)

Query: 427 LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFE 486
           L L H +L   V   L +L  +  LDLS+N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----------------------A 38

Query: 487 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ-IGNLTRIQTLNLS 545
           ++          +   +  +     L  L  L L  N+L      Q + +  R+  LNL 
Sbjct: 39  LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

Query: 546 YNNLT---GLIPSTFSNLKHIESL 566
            N+L    G+       L  + S+
Sbjct: 99  GNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 258 VFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE 317
           V +++   L  ++      +  +  LDLS+N+L    P         L+ L +   S   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNA 54

Query: 318 GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG-PIPVEFCQLYSLQILDISDNNISG 376
              +   +          NL  L  +++  N L+             L +L++  N++  
Sbjct: 55  LENVDGVA----------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283
            +     +  LD+S+N +R   P      L  L V   S N           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--ALENVDGVANLPRLQEL 70

Query: 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE 317
            L NN+L         V C  L  L L  NSL +
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKHIESLDLSYNKL 573
            SGL  + +  +      +     +  L +     L  L       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627
               P        L   ++++N L   +   T Q  +  +    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 31/167 (18%), Positives = 52/167 (31%), Gaps = 24/167 (14%)

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
           L  + +    +   HL  G  NL  L + N             L       L  L  L +
Sbjct: 13  LRCTRDGAL-DSLHHLP-GAENLTELYIENQ----------QHLQHLELRDLRGLGELRN 60

Query: 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLK 402
           + + ++ L    P  F     L  L++S N +          LS++++ LS N LH    
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH---- 116

Query: 403 RDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQ 449
              S  L       W+    +     +    L+      L  +    
Sbjct: 117 --CSCALR------WLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574
            Q  N  R + L+L    +   I +  + L   +++D S N++ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR 54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 23/156 (14%)

Query: 272 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP 331
           + + N    + LDL   ++   + E+L         +  S+N ++             + 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR------------KLD 57

Query: 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 391
           G+   L  L  +++  N +          L  L  L +++N++          L      
Sbjct: 58  GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--------LGDLDPL 108

Query: 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHL 427
            S   L                    I ++ Q+  L
Sbjct: 109 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 10/192 (5%)

Query: 397 LHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456
           L  ++K  L    +  ++     +L Q++ L      ++    V+   LN L  ++ SNN
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNN 72

Query: 457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS 516
            L    P       +    NN+   D     +         F  +         + +L  
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN- 131

Query: 517 GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG- 575
              L  +         +  LT +Q LN S N +T L P   +NL  +E LD+S NK++  
Sbjct: 132 --RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 187

Query: 576 KIPHQLVELKTL 587
            +  +L  L++L
Sbjct: 188 SVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282
           +P         L +++N +       +   LP L    +  N L G  P++F     +Q 
Sbjct: 23  IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82

Query: 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342
           L L  N++     +        L  L          L L +N +S  +PG   +L  L  
Sbjct: 83  LQLGENKIKEISNKMFL----GLHQLK--------TLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 394
           + +  N       + +   +  +   ++        PS    + I+ +  S+
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSE 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	710
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.46

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6.2e-28  Score=245.95  Aligned_cols=259  Identities=34%  Similarity=0.531  Sum_probs=196.2

Q ss_pred             CCCEEeccCCccCC--cCChhhhcCCCCCcEEEccC-CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccc
Q 005168          279 FLQLLDLSNNQLTG--EIPEHLAVGCVNLQFLMLSN-NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP  355 (710)
Q Consensus       279 ~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~Ls~-n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  355 (710)
                      +++.|+|++|.+.+  .+|..+. ++++|++|++++ |.+           +|.+|..|+++++|++|++++|++.+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l-----------~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNL-----------VGPIPPAIAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTE-----------ESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCcccccccccccccc-----------ccccccccccccccchhhhcccccccccc
Confidence            45566666665554  2444443 455555555443 222           22344555555555555555555554444


Q ss_pred             hhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCccc
Q 005168          356 VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE  435 (710)
Q Consensus       356 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  435 (710)
                      ..+..+.+|+.+++++|.+.                                    +.+|..+..++.++.+++++|.+.
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~------------------------------------~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccccchhhhccccccccccc------------------------------------ccCchhhccCcccceeeccccccc
Confidence            44555555555555444433                                    256777888999999999999999


Q ss_pred             ccCCcccCCCCCC-CEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceeccccccc
Q 005168          436 GEVPVQLCELNQL-QLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL  514 (710)
Q Consensus       436 ~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  514 (710)
                      +.+|..+..+..+ +.+++++|++++..|..+..+.                                            
T Consensus       163 ~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~--------------------------------------------  198 (313)
T d1ogqa_         163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--------------------------------------------  198 (313)
T ss_dssp             EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc--------------------------------------------
Confidence            8899888888775 8999999999988887765533                                            


Q ss_pred             ccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccC
Q 005168          515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY  594 (710)
Q Consensus       515 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~  594 (710)
                      ...++++++...+..|..+..+++++.+++++|.+++.++ .+..+++|+.|+|++|++++.+|+.+..+++|++|+|++
T Consensus       199 ~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence            4579999999999999999999999999999999987654 688899999999999999999999999999999999999


Q ss_pred             CccccccCCCccccccCCcccccCCCCCCCCCCCCCC
Q 005168          595 NNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICR  631 (710)
Q Consensus       595 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~  631 (710)
                      |.++|.+|++ ..+..++.+++.+|+..|+.|++.|.
T Consensus       278 N~l~g~iP~~-~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CcccccCCCc-ccCCCCCHHHhCCCccccCCCCCCCC
Confidence            9999999974 77889999999999999999888773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.7e-25  Score=232.40  Aligned_cols=350  Identities=23%  Similarity=0.314  Sum_probs=171.1

Q ss_pred             cCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhh
Q 005168            4 LSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREF   83 (710)
Q Consensus         4 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~   83 (710)
                      ++.+.+++....  ..+.+|++|+++++.|+ .++  .++.+++|++|+|++|+|+                 .++  .+
T Consensus        29 l~~~~~~~~~~~--~~l~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~-----------------~l~--~l   84 (384)
T d2omza2          29 LGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLT-----------------DIT--PL   84 (384)
T ss_dssp             TTCSSTTSEECH--HHHTTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCC-----------------CCG--GG
T ss_pred             hCCCCCCCccCH--HHhCCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCC-----------------CCc--cc
Confidence            445556554432  45678899999999888 564  6888899999999988876                 333  36


Q ss_pred             cCCCCCCEEEccCCcCCCC------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcc
Q 005168           84 DSFNNLEVLDMSYNKIDNL------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQL  157 (710)
Q Consensus        84 ~~l~~L~~L~Ls~n~l~~~------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L  157 (710)
                      +++++|++|++++|+++++      ++|+.|+++++.+++.   ........+.......+.+.......   .......
T Consensus        85 ~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~  158 (384)
T d2omza2          85 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISDISALS---GLTSLQQ  158 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTCTTCSEEEEEEEEECCCGGGT---TCTTCSE
T ss_pred             cCCcccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccc---ccccccc
Confidence            6677777777777766543      2333333333332211   11122223333333333222111110   0000011


Q ss_pred             cEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcc
Q 005168          158 QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS  237 (710)
Q Consensus       158 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  237 (710)
                      ..... .     ......+...+.........+....  ... +..+++++.+.+++|.+.+..+  +..+++|++|+++
T Consensus       159 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~  227 (384)
T d2omza2         159 LSFGN-Q-----VTDLKPLANLTTLERLDISSNKVSD--ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN  227 (384)
T ss_dssp             EEEEE-S-----CCCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             ccccc-c-----cchhhhhcccccccccccccccccc--ccc-cccccccceeeccCCccCCCCc--ccccCCCCEEECC
Confidence            11111 0     0011122222333333333332211  111 1344555555555555444322  2334455555555


Q ss_pred             cCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcC
Q 005168          238 NNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE  317 (710)
Q Consensus       238 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~  317 (710)
                      +|.++ .++ .+ ..+++|+.|++++|.+++..  .+..+++|++|++++|.++ .++.  +.+++.++.++++.|.+..
T Consensus       228 ~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~  299 (384)
T d2omza2         228 GNQLK-DIG-TL-ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLED  299 (384)
T ss_dssp             SSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC
T ss_pred             CCCCC-Ccc-hh-hcccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCCc--ccccccccccccccccccc
Confidence            55554 322 11 12445555555555544332  2444455555555555544 3322  2234444444444444321


Q ss_pred             eeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccc
Q 005168          318 GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML  397 (710)
Q Consensus       318 ~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l  397 (710)
                                   ...+..+++++.|++++|++++..+  +..+++|++|++++|+++                      
T Consensus       300 -------------~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~----------------------  342 (384)
T d2omza2         300 -------------ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS----------------------  342 (384)
T ss_dssp             -------------CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC----------------------
T ss_pred             -------------ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCC----------------------
Confidence                         1223444444444444444443321  344444444444444443                      


Q ss_pred             cccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCc
Q 005168          398 HRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS  457 (710)
Q Consensus       398 ~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  457 (710)
                                     .++ .++++++|++|++++|++++..|  +.++++|+.|+|++|.
T Consensus       343 ---------------~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         343 ---------------DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             ---------------CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             ---------------CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence                           222 46778999999999999986654  8889999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.8e-25  Score=234.89  Aligned_cols=332  Identities=21%  Similarity=0.283  Sum_probs=161.3

Q ss_pred             CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEE
Q 005168          180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF  259 (710)
Q Consensus       180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L  259 (710)
                      .+|++|+++++.++. +. .+ ..+++|++|++++|++++..  +++.+++|++|++++|++. .++. +. .+++|+.|
T Consensus        44 ~~l~~L~l~~~~I~~-l~-gl-~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~-~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQADRLGIKS-ID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGL  115 (384)
T ss_dssp             TTCCEEECCSSCCCC-CT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEE
T ss_pred             CCCCEEECCCCCCCC-cc-cc-ccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-cc-cccccccc
Confidence            456666666665553 21 12 45566666666666655432  2555666666666666655 3332 22 25556666


Q ss_pred             EccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCc--------CeeeccCccCccCcC
Q 005168          260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK--------EGLYLTNNSLSGNIP  331 (710)
Q Consensus       260 ~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~--------~~l~l~~n~l~~~~~  331 (710)
                      +++++.+.+..+  ......+.......|.+. .+......................        .......|..  ...
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  190 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDI  190 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CCC
T ss_pred             cccccccccccc--cccccccccccccccccc-ccccccccccccccccccccchhhhhcccccccccccccccc--ccc
Confidence            666555554322  223344555555554443 222211111111111111110000        0011111111  122


Q ss_pred             ccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCc
Q 005168          332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLN  411 (710)
Q Consensus       332 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~  411 (710)
                      ..+..+++++.+++++|.+++..+  +...++|++|++++|.++... ....+++|+.+++++|.+++.           
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-----------  256 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-----------  256 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-----------
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCC-----------
Confidence            334445555555555555554333  233445555555555554321 111244455554444443321           


Q ss_pred             ccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceee
Q 005168          412 GSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFI  491 (710)
Q Consensus       412 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (710)
                         + .+..+++|++|+++++++++..  .+..++.++.+++++|.+.+..                             
T Consensus       257 ---~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-----------------------------  301 (384)
T d2omza2         257 ---A-PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-----------------------------  301 (384)
T ss_dssp             ---G-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-----------------------------
T ss_pred             ---C-cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc-----------------------------
Confidence               0 1333445555555555554322  2444455555555555443210                             


Q ss_pred             cCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCC
Q 005168          492 EGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN  571 (710)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  571 (710)
                                      ....++.++.|++++|++++..  .+..+++|++|++++|+++++  ..++++++|++|++++|
T Consensus       302 ----------------~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         302 ----------------PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHN  361 (384)
T ss_dssp             ----------------GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSS
T ss_pred             ----------------ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCC
Confidence                            1122456777777777777543  366777777777777777765  25777777777777777


Q ss_pred             cCcccCCcccccCCCCCEEeccCC
Q 005168          572 KLNGKIPHQLVELKTLEVFSVAYN  595 (710)
Q Consensus       572 ~i~~~~~~~l~~l~~L~~L~l~~N  595 (710)
                      ++++..|  +.++++|+.|+|++|
T Consensus       362 ~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         362 QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cCCCChh--hccCCCCCEeeCCCC
Confidence            7775544  667777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=7.8e-27  Score=237.73  Aligned_cols=84  Identities=27%  Similarity=0.405  Sum_probs=52.0

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      .++.+++++|.+.+.+ ..+..+++|+.|+|++|++++.+|+.|.++++|++|+|++|++++.+|+ +..+++|+.++++
T Consensus       222 ~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~  299 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA  299 (313)
T ss_dssp             CCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTC
T ss_pred             cccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhC
Confidence            4444444444444332 2355566667777777777666666677777777777777777766664 4556667777777


Q ss_pred             CCcccc
Q 005168          594 YNNLSG  599 (710)
Q Consensus       594 ~N~l~~  599 (710)
                      +|+..|
T Consensus       300 ~N~~l~  305 (313)
T d1ogqa_         300 NNKCLC  305 (313)
T ss_dssp             SSSEEE
T ss_pred             CCcccc
Confidence            776544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.9e-24  Score=219.03  Aligned_cols=269  Identities=21%  Similarity=0.258  Sum_probs=178.0

Q ss_pred             CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168          231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML  310 (710)
Q Consensus       231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  310 (710)
                      .+.++=++++++ .+|..++   +++++|+|++|+|+.+.+.+|.++++|++|++++|.+. .++..+|.++++|++|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            455666666666 6666543   46777777777777665566777777777777777776 666666666777777777


Q ss_pred             cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceE
Q 005168          311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV  390 (710)
Q Consensus       311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L  390 (710)
                      ++|+++.            +|..  ....++.|++.+|.+....+..+.....+..++...|......            
T Consensus        87 ~~n~l~~------------l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~------------  140 (305)
T d1xkua_          87 SKNQLKE------------LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------------  140 (305)
T ss_dssp             CSSCCSB------------CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------------
T ss_pred             cCCccCc------------Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC------------
Confidence            7776653            2222  2345666777777777666666767777777777666443211            


Q ss_pred             EccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168          391 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT  470 (710)
Q Consensus       391 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  470 (710)
                                            ..+..+..+++|+.+++++|.+.. .|..  .+++|+.|++++|...+..+..|..+ 
T Consensus       141 ----------------------~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~-  194 (305)
T d1xkua_         141 ----------------------IENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGL-  194 (305)
T ss_dssp             ----------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTC-
T ss_pred             ----------------------CCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcc-
Confidence                                  223345556677777777777663 2322  24667777777777766666555443 


Q ss_pred             ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168          471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT  550 (710)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  550 (710)
                                                                +.++.|++++|.+++..+..|.++++|++|+|++|+|+
T Consensus       195 ------------------------------------------~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         195 ------------------------------------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             ------------------------------------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ------------------------------------------ccccccccccccccccccccccccccceeeeccccccc
Confidence                                                      36777777777777777777777888888888888887


Q ss_pred             CCCchhhcCCccCCEEeCcCCcCcccCCccc------ccCCCCCEEeccCCcccc
Q 005168          551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQL------VELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       551 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l------~~l~~L~~L~l~~N~l~~  599 (710)
                      .+ |++|..+++|++|+|++|+|+.+.+..|      ..+.+|+.|++++|++..
T Consensus       233 ~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         233 KV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            65 4577778888888888888875443333      346778888888888864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=224.09  Aligned_cols=180  Identities=21%  Similarity=0.232  Sum_probs=140.7

Q ss_pred             CChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          414 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       414 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      .+.+|.++++|++|++++|.+....+..+...++|+.+++++|+++++.+..|....                       
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-----------------------  153 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----------------------  153 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------
T ss_pred             cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc-----------------------
Confidence            345566777888888888888766667777888888888888888877677775533                       


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                          .|+.|++++|.+++..+.+|.++++|+.+++++|+++++.|+.|.++++|++|++++|++
T Consensus       154 --------------------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         154 --------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             --------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence                                788889999988888888999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccCCCCCEEeccCCccccccCCCccccc-cCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168          574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA-TFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER  645 (710)
Q Consensus       574 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~  645 (710)
                      .+..++.|..+++|+.|++++|+|.|+|+.  .++. .++......+..       .|..|...++..+....
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~--~~l~~~l~~~~~~~~~~-------~C~~p~~l~g~~l~~l~  277 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDCRA--RPLWAWLQKFRGSSSEV-------PCSLPQRLAGRDLKRLA  277 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGG--HHHHHHHHHCCSEECCC-------BEEESGGGTTCBGGGSC
T ss_pred             ccccccccccccccCEEEecCCCCCCCccc--hHHHHHHHhCcCCCCce-------EeCCchHHcCCccccCC
Confidence            988888999999999999999999999863  2222 122222222222       46667666665444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.4e-23  Score=210.86  Aligned_cols=260  Identities=25%  Similarity=0.284  Sum_probs=176.2

Q ss_pred             CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEE
Q 005168          229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL  308 (710)
Q Consensus       229 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  308 (710)
                      +++++|++++|+|+ .+|...+..+++|++|++++|.+..+.|.+|.++++|++|++++|+++ .+|...+   +.++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~---~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchh---hhhhhh
Confidence            46777777777776 666655555677777777777777666777777777777777777776 6665443   466666


Q ss_pred             EccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccc--cccchhhcCCCCCCEEECCCCcCcccCCCCCCCCC
Q 005168          309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS  386 (710)
Q Consensus       309 ~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~  386 (710)
                      +++.|.+..           ..+..+.....++.+....|...  ...+..|.++++|+.+++++|.+..+....     
T Consensus       106 ~~~~n~l~~-----------l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-----  169 (305)
T d1xkua_         106 RVHENEITK-----------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----  169 (305)
T ss_dssp             ECCSSCCCB-----------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-----
T ss_pred             hccccchhh-----------hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc-----
Confidence            666655543           33445566666667777666433  334566788888888888888776432211     


Q ss_pred             cceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168          387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF  466 (710)
Q Consensus       387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  466 (710)
                                                        .++|+.|++++|......+.+|.+++.+++|++++|.+.+..+..+
T Consensus       170 ----------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         170 ----------------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             ----------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             ----------------------------------CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence                                              3467777777777776666777777777777777777776666666


Q ss_pred             ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC
Q 005168          467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY  546 (710)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  546 (710)
                      .+                                           +++|++|+|++|+++. +|.+|..+++|++|+|++
T Consensus       216 ~~-------------------------------------------l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         216 AN-------------------------------------------TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             GG-------------------------------------------STTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCS
T ss_pred             cc-------------------------------------------cccceeeecccccccc-cccccccccCCCEEECCC
Confidence            55                                           3377788888887774 466788888888888888


Q ss_pred             ccCCCCCchhh------cCCccCCEEeCcCCcCc--ccCCcccccCCCC
Q 005168          547 NNLTGLIPSTF------SNLKHIESLDLSYNKLN--GKIPHQLVELKTL  587 (710)
Q Consensus       547 n~l~~~~~~~~------~~l~~L~~L~Ls~N~i~--~~~~~~l~~l~~L  587 (710)
                      |+|+.+....|      ..+++|+.|+|++|++.  ...|.+|.-+...
T Consensus       252 N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             CccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence            88887765554      34678888888888875  2445555544333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-24  Score=213.79  Aligned_cols=255  Identities=23%  Similarity=0.235  Sum_probs=161.7

Q ss_pred             EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168          233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN  312 (710)
Q Consensus       233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  312 (710)
                      .++.++++++ .+|..++   +++++|+|++|+|+.+.+.+|.++++|++|++++|.+. .++...+.++..++.++...
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            4566666777 7776553   46788888888887776677788888888888888777 66666666666666655432


Q ss_pred             CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEc
Q 005168          313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL  392 (710)
Q Consensus       313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l  392 (710)
                      +                                  +.+....+..|.++++|++|++++|.+....+..           
T Consensus        90 ~----------------------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------  124 (284)
T d1ozna_          90 N----------------------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-----------  124 (284)
T ss_dssp             C----------------------------------TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-----------
T ss_pred             c----------------------------------cccccccchhhcccccCCEEecCCcccccccccc-----------
Confidence            2                                  2233333445555555566655555544322221           


Q ss_pred             cCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccccc
Q 005168          393 SKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY  472 (710)
Q Consensus       393 ~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  472 (710)
                                               +....+|+.+++++|.++++.+.+|..+++|+.|++++|.+.+..+..|.++.  
T Consensus       125 -------------------------~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~--  177 (284)
T d1ozna_         125 -------------------------FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH--  177 (284)
T ss_dssp             -------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--
T ss_pred             -------------------------cchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc--
Confidence                                     22334555555555555544455565666666666666666655555555432  


Q ss_pred             ccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCC
Q 005168          473 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGL  552 (710)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  552 (710)
                                                               +|+.+++++|++++..|..|.++++|++|++++|+++++
T Consensus       178 -----------------------------------------~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         178 -----------------------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             -----------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -----------------------------------------ccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence                                                     666666666666666677778888888888888888888


Q ss_pred             CchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcc
Q 005168          553 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTA  606 (710)
Q Consensus       553 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  606 (710)
                      .+.+|+++++|++|++++|++.+..+.. .-...++.+....+.+.|..|..+.
T Consensus       217 ~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             cccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence            8888888888888888888887544321 1112344555666778887776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=206.68  Aligned_cols=137  Identities=28%  Similarity=0.318  Sum_probs=112.7

Q ss_pred             CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       421 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      +++|++|++++|++++ .+..+..+++|+.|++++|.+.+..+..+..                                
T Consensus        76 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------------  122 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------  122 (266)
T ss_dssp             CTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------
T ss_pred             cccccccccccccccc-cccccccccccccccccccccceeecccccc--------------------------------
Confidence            5667777777777663 3455677777888888777776655555544                                


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ  580 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  580 (710)
                                 +++++.|++++|.++...+..+..+++|+.+++++|+++++.++.|..+++|++|+|++|+|+ .+|+.
T Consensus       123 -----------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         123 -----------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             -----------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             -----------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence                       337788888888888777888889999999999999999999999999999999999999999 78888


Q ss_pred             cccCCCCCEEeccCCccccccC
Q 005168          581 LVELKTLEVFSVAYNNLSGEIL  602 (710)
Q Consensus       581 l~~l~~L~~L~l~~N~l~~~~~  602 (710)
                      +..+++|+.|+|++|||.|+|.
T Consensus       191 ~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         191 FFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTTCCCSEEECCSCCBCCSGG
T ss_pred             HCCCCCCCEEEecCCCCCCCcc
Confidence            8889999999999999999885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.9e-22  Score=195.30  Aligned_cols=166  Identities=25%  Similarity=0.232  Sum_probs=146.9

Q ss_pred             CChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          414 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       414 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      .+.+|.++++|++|+|++|+++...  .+..+++|++|++++|++++. +..+..                         
T Consensus        47 ~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-------------------------   98 (266)
T d1p9ag_          47 SLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQT-------------------------   98 (266)
T ss_dssp             EGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSC-CCCTTT-------------------------
T ss_pred             CHHHhhccccccccccccccccccc--ccccccccccccccccccccc-cccccc-------------------------
Confidence            3456778899999999999998543  367899999999999999743 444544                         


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL  573 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i  573 (710)
                                        ++.|+.|++++|.+.+..+..+..+.++++|++++|.++.+.+..+..+++|+.|++++|++
T Consensus        99 ------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          99 ------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ------------------ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence                              45899999999999988889999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       574 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      ++..++.|..+++|++|+|++|.++ .+|..+..+..++.+.+.||||.|+|.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            9888889999999999999999999 677767778889999999999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=6.5e-17  Score=166.45  Aligned_cols=73  Identities=29%  Similarity=0.331  Sum_probs=43.8

Q ss_pred             ccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccC
Q 005168          515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY  594 (710)
Q Consensus       515 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~  594 (710)
                      ....++..+.+.+.    ...+++|++|+|++|+++.++ .   .+++|+.|+|++|+|+ .+|+.   +++|+.|++++
T Consensus       266 ~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             CCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             hcccccccCccccc----cccCCCCCEEECCCCccCccc-c---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence            34455555554422    233567777777777777553 2   2466777777777776 44432   35677777777


Q ss_pred             Ccccc
Q 005168          595 NNLSG  599 (710)
Q Consensus       595 N~l~~  599 (710)
                      |+++.
T Consensus       334 N~L~~  338 (353)
T d1jl5a_         334 NPLRE  338 (353)
T ss_dssp             SCCSS
T ss_pred             CcCCC
Confidence            77663

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.9e-19  Score=170.03  Aligned_cols=222  Identities=18%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEcc
Q 005168          232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS  311 (710)
Q Consensus       232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  311 (710)
                      ++++.++.+++ .+|..++   +++++|++++|+|+.+.+.+|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46666777776 7776553   3677777777777766666677777777777777776645566666666666665543


Q ss_pred             CCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEE
Q 005168          312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH  391 (710)
Q Consensus       312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~  391 (710)
                      .+                                  |.+....+..|.++++|+++++++|.+....+..          
T Consensus        87 ~~----------------------------------n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~----------  122 (242)
T d1xwdc1          87 KA----------------------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH----------  122 (242)
T ss_dssp             CC----------------------------------TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT----------
T ss_pred             cc----------------------------------ccccccccccccccccccccccchhhhccccccc----------
Confidence            21                                  2233334444555556666666655554322111          


Q ss_pred             ccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCC-CCCEEEccCCcccccCCCCccccc
Q 005168          392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN-QLQLLDLSNNSLHGSIPPCFDNTT  470 (710)
Q Consensus       392 l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~  470 (710)
                                               .+..+..++.+..+++.+....+..|..++ .++.|++++|++++..+..|....
T Consensus       123 -------------------------~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1         123 -------------------------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             -------------------------TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCC
T ss_pred             -------------------------ccccccccccccccccccccccccccccccccceeeecccccccccccccccchh
Confidence                                     011223344444444444444444444443 566667766666654444432211


Q ss_pred             ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168          471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT  550 (710)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  550 (710)
                                                                 ..+.+++++|+++...+..|.++++|++|+|++|+++
T Consensus       178 -------------------------------------------l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         178 -------------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             -------------------------------------------EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             -------------------------------------------hhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence                                                       2233345666777655666777788888888888887


Q ss_pred             CCCchhhcCCccCCEEeCc
Q 005168          551 GLIPSTFSNLKHIESLDLS  569 (710)
Q Consensus       551 ~~~~~~~~~l~~L~~L~Ls  569 (710)
                      .+++..|.++++|+.+++.
T Consensus       215 ~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCSSSCTTCCEEESSSEE
T ss_pred             ccCHHHHcCCcccccCcCC
Confidence            7777777777777666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1e-16  Score=164.92  Aligned_cols=126  Identities=20%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcc----cccEEecCCCccee
Q 005168            1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFV----VSKELYLDDTGFKG   76 (710)
Q Consensus         1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~----~l~~L~L~~~~~~~   76 (710)
                      +||||+|.++.++ +   ..++|++|++++|+|+ .+| +.   ..+|+.|++++|.++.++    .|++|++++|.+. 
T Consensus        42 ~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~-~lp-~~---~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-  111 (353)
T d1jl5a_          42 ELELNNLGLSSLP-E---LPPHLESLVASCNSLT-ELP-EL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-  111 (353)
T ss_dssp             EEECTTSCCSCCC-S---CCTTCSEEECCSSCCS-SCC-CC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred             EEEeCCCCCCCCC-C---CCCCCCEEECCCCCCc-ccc-cc---hhhhhhhhhhhcccchhhhhccccccccccccccc-
Confidence            3788888888654 2   2568888888888887 676 33   457888888888777443    4678888888876 


Q ss_pred             ecCHHhhcCCCCCCEEEccCCcCCCC----CCCcEEEccccccccccCcccccCCCCCcEEEccCCccc
Q 005168           77 TLDIREFDSFNNLEVLDMSYNKIDNL----VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN  141 (710)
Q Consensus        77 ~i~~~~~~~l~~L~~L~Ls~n~l~~~----~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~  141 (710)
                      .+|.  +.++++|++|+++++.+...    ..+..+.+..+....   ...+..++.++.+.++.+...
T Consensus       112 ~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         112 KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccc--hhhhccceeeccccccccccccccccccchhhccccccc---cccccccccceeccccccccc
Confidence            5654  56778888888888776654    556666666555432   233556666777777766544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-19  Score=192.96  Aligned_cols=366  Identities=17%  Similarity=0.138  Sum_probs=197.0

Q ss_pred             CeecCCCCCCCcc-chhhccCCCCCEEECCCCcccc----ccChhhhcCCCCCCEEeCCCCCCC-------------Ccc
Q 005168            1 MLNLSGNSFNNTI-LSSLTHLSSLRSLNLNGNSLEG----SIDVKEFDSLRDLEELDIGENKID-------------KFV   62 (710)
Q Consensus         1 ~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~----~i~~~~f~~l~~L~~L~Ls~n~l~-------------~l~   62 (710)
                      +||+++|+|+... ...+..++++++|+|++|.++.    .+. .++..+++|++|||++|.|+             ...
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~   84 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   84 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCC
Confidence            4899999999865 3457889999999999998862    233 56789999999999999985             224


Q ss_pred             cccEEecCCCcceee----cCHHhhcCCCCCCEEEccCCcCCCC-------------CCCcEEEccccccccc---cCcc
Q 005168           63 VSKELYLDDTGFKGT----LDIREFDSFNNLEVLDMSYNKIDNL-------------VVPQELRLSDNHFRIP---ISLE  122 (710)
Q Consensus        63 ~l~~L~L~~~~~~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~L~~L~L~~~~l~~~---~~~~  122 (710)
                      +|++|+|++|.+++.    ++. ++..+++|++|++++|.+...             ................   ....
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  163 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCEEECCCCCccccccccccc-hhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccc
Confidence            688999999988743    333 667788888888888876532             1222233322222110   0001


Q ss_pred             cccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhc-cCCCCCCEEEccCCcCcccCCh---
Q 005168          123 PLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL-YHQHDLEYVRLSHIKMNGEFPN---  198 (710)
Q Consensus       123 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~---  198 (710)
                      .+.....++.+.++.+.........                        ....+ ........+++..+.+......   
T Consensus       164 ~l~~~~~~~~~~ls~~~~~~~~~~~------------------------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (460)
T d1z7xw1         164 VLRAKPDFKELTVSNNDINEAGVRV------------------------LCQGLKDSPCQLEALKLESCGVTSDNCRDLC  219 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHH------------------------HHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             ccccccccccccccccccccccccc------------------------cccccccccccccccccccccccchhhhccc
Confidence            1223344444444444332111100                        00011 1122344555554443321111   


Q ss_pred             hHhhcCCCCcEEEccCCcccc-----cCccCccCCCCCCEEEcccCcCcccCChhh---hhcCCCccEEEccCCcCcccC
Q 005168          199 WLLENNTKLATLFLVNDSLAG-----PFWLPIHSHKRLGILDISNNNIRGHIPVEI---GDVLPSLYVFNISMNALDGSI  270 (710)
Q Consensus       199 ~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~  270 (710)
                      ......+.++.+.+.++.+..     ...........++.+++++|.+........   ....+.++.+++++|.+....
T Consensus       220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             ccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            112345556666666555432     112223345566667776666552211111   112456677777777665321


Q ss_pred             Ccc-----CcCCCCCCEEeccCCccCCcCCh---hhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-cCCCccc
Q 005168          271 PSS-----FGNMKFLQLLDLSNNQLTGEIPE---HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-GNLTWLI  341 (710)
Q Consensus       271 ~~~-----f~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~  341 (710)
                      ...     ......|+.+++++|.++.....   .++...++|++|+|++|.+...      .+. .++..+ ...+.|+
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~------g~~-~l~~~l~~~~~~L~  372 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------GVR-ELCQGLGQPGSVLR  372 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH------HHH-HHHHHHTSTTCCCC
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc------ccc-hhhhhhhcccCCCC
Confidence            111     12335677777777766522111   1233456777777777765420      000 112222 2355677


Q ss_pred             eeeCccCccccc----cchhhcCCCCCCEEECCCCcCcccCCCC----CC--CCCcceEEccCccccc
Q 005168          342 HIIMPENHLEGP----IPVEFCQLYSLQILDISDNNISGSLPSC----FH--PLSIEQVHLSKNMLHR  399 (710)
Q Consensus       342 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~i~~~~~~~----~~--~~~L~~L~l~~n~l~~  399 (710)
                      +|++++|.++..    ++..+..+++|++|++++|+++......    +.  ...|+.|++.++.+..
T Consensus       373 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            777777777643    3344566677888888888775321111    11  2357778777766553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-19  Score=194.51  Aligned_cols=391  Identities=18%  Similarity=0.118  Sum_probs=192.3

Q ss_pred             cccEEEecCCCCCCCcc-ChhccCCCCCCEEEccCCcCcccCChh---HhhcCCCCcEEEccCCccccc----CccCcc-
Q 005168          156 QLQSLSLSSSYGDGVTF-PKFLYHQHDLEYVRLSHIKMNGEFPNW---LLENNTKLATLFLVNDSLAGP----FWLPIH-  226 (710)
Q Consensus       156 ~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~----~~~~~~-  226 (710)
                      +|++|++ +++.+++.. ...+..+++++.|++++|.++......   .+..+++|++|++++|.++..    +...+. 
T Consensus         3 ~l~~ld~-~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEe-eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5666666 444444322 223344566666666666655322111   124556666666666655421    111121 


Q ss_pred             CCCCCCEEEcccCcCcccCChhh---hhcCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcCC---
Q 005168          227 SHKRLGILDISNNNIRGHIPVEI---GDVLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEIP---  295 (710)
Q Consensus       227 ~~~~L~~L~ls~n~i~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i~---  295 (710)
                      ...+|++|++++|++++..-..+   ...+++|++|++++|.+.......+     ................. ...   
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~  160 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEP  160 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc-hhhhcc
Confidence            22356666666666552211111   1124556666666665543211111     11122233333333222 110   


Q ss_pred             -hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-cCCCccceeeCccCccccc----cchhhcCCCCCCEEEC
Q 005168          296 -EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-GNLTWLIHIIMPENHLEGP----IPVEFCQLYSLQILDI  369 (710)
Q Consensus       296 -~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l  369 (710)
                       .......+.++.++++++.....      ... .....+ ......+.+.+.++.+...    ....+...+.++.+++
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~------~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  233 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEA------GVR-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL  233 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHH------HHH-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccccccccccccccccc------ccc-ccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence             01112334555666555543310      000 000001 1122344556655544422    2223445667777777


Q ss_pred             CCCcCccc-----CCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc---
Q 005168          370 SDNNISGS-----LPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV---  440 (710)
Q Consensus       370 s~n~i~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---  440 (710)
                      ++|.+...     ...... ...++.+++++|.+.....         .....++...+.++.+++++|.+......   
T Consensus       234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~---------~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC---------GDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH---------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             hhccccccccchhhccccccccccccccccccccccccc---------ccccccccccccccccccccccccccccchhh
Confidence            77765321     111111 4567777666665542110         01223345567778888888777532111   


Q ss_pred             -c-cCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEE
Q 005168          441 -Q-LCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL  518 (710)
Q Consensus       441 -~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  518 (710)
                       . ......|+.+++++|.++......+...                                       ....++|++|
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~---------------------------------------~~~~~~L~~L  345 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSV---------------------------------------LAQNRFLLEL  345 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHH---------------------------------------HHHCSSCCEE
T ss_pred             ccccccccccccccccccchhhhhhhhcccc---------------------------------------cccccchhhh
Confidence             1 1234568888888877653321111110                                       0123478889


Q ss_pred             ECcCCcCCCCC----Cccc-cccCCCCEEeCCCccCCCC----CchhhcCCccCCEEeCcCCcCcccCCcc----cc-cC
Q 005168          519 YLSCNKLIGHI----PPQI-GNLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQ----LV-EL  584 (710)
Q Consensus       519 ~L~~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----l~-~l  584 (710)
                      +|++|++.+..    +..+ ...+.|++|+|++|.|+..    .++.+...++|++|+|++|+|+......    +. ..
T Consensus       346 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~  425 (460)
T d1z7xw1         346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG  425 (460)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT
T ss_pred             heeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCC
Confidence            99888886432    2222 2456788999999988753    2345666788999999999887422222    22 23


Q ss_pred             CCCCEEeccCCccccccCC
Q 005168          585 KTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       585 ~~L~~L~l~~N~l~~~~~~  603 (710)
                      ..|+.|++.+|.+......
T Consensus       426 ~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         426 CLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             CCCCEEECTTCCCCHHHHH
T ss_pred             CccCEEECCCCCCCHHHHH
Confidence            4688899998888765443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.3e-18  Score=157.98  Aligned_cols=89  Identities=25%  Similarity=0.353  Sum_probs=57.1

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      +|+.|+|++|.+....+..|..+++|++|+|++|+|+++.+++|.++++|++|+|++|+|+++.|+.|..+++|++++++
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            55666666666655556666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCccccccC
Q 005168          594 YNNLSGEIL  602 (710)
Q Consensus       594 ~N~l~~~~~  602 (710)
                      +|++.|.+.
T Consensus       135 ~N~~~~~~~  143 (192)
T d1w8aa_         135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             ccccccccc
Confidence            666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.5e-17  Score=155.62  Aligned_cols=204  Identities=19%  Similarity=0.277  Sum_probs=127.6

Q ss_pred             CEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcC
Q 005168          281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ  360 (710)
Q Consensus       281 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  360 (710)
                      ..++++.+++++.++.   ..+.+|++|++.+|.+.+            + ..+..+++|++|++++|.+.+..+  +..
T Consensus        22 ~~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~------------l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~   83 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT------------I-EGVQYLNNLIGLELKDNQITDLAP--LKN   83 (227)
T ss_dssp             HHHHTTCSSTTSEECH---HHHHTCCEEECTTSCCCC------------C-TTGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HHHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCc------------c-hhHhcCCCCcEeecCCceeecccc--ccc
Confidence            3445555555532221   234556666655555442            1 235555666666666665554332  555


Q ss_pred             CCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc
Q 005168          361 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV  440 (710)
Q Consensus       361 l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  440 (710)
                      +++++.+++++|.++.+                                      ..+..+++|+.++++++...+.  .
T Consensus        84 l~~l~~l~~~~n~~~~i--------------------------------------~~l~~l~~L~~l~l~~~~~~~~--~  123 (227)
T d1h6ua2          84 LTKITELELSGNPLKNV--------------------------------------SAIAGLQSIKTLDLTSTQITDV--T  123 (227)
T ss_dssp             CCSCCEEECCSCCCSCC--------------------------------------GGGTTCTTCCEEECTTSCCCCC--G
T ss_pred             ccccccccccccccccc--------------------------------------cccccccccccccccccccccc--c
Confidence            55555555555544421                                      1244567777777777766533  2


Q ss_pred             ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEEC
Q 005168          441 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL  520 (710)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  520 (710)
                      .+...+.++.+.++++.+....+  +.                                           ..+.|+.|++
T Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~~--~~-------------------------------------------~~~~L~~L~l  158 (227)
T d1h6ua2         124 PLAGLSNLQVLYLDLNQITNISP--LA-------------------------------------------GLTNLQYLSI  158 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--GG-------------------------------------------GCTTCCEEEC
T ss_pred             hhccccchhhhhchhhhhchhhh--hc-------------------------------------------cccccccccc
Confidence            35666777777777776543221  11                                           1347888888


Q ss_pred             cCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168          521 SCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA  593 (710)
Q Consensus       521 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~  593 (710)
                      ++|.+.+.  ..++++++|++|+|++|+++++.  .++++++|++|+|++|+++...|  +..+++|+.|+++
T Consensus       159 ~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             cccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            88887643  34788889999999999888763  47888899999999998885433  7788899998886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=8e-17  Score=154.48  Aligned_cols=203  Identities=22%  Similarity=0.293  Sum_probs=112.4

Q ss_pred             EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168          259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT  338 (710)
Q Consensus       259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  338 (710)
                      ++++.+++++..  .+..+.+|+.|++++|.++ .++.  +..+++|++|++++|.+..           .  ..+..++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~-----------~--~~l~~l~   85 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITD-----------L--APLKNLT   85 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC-----------C--GGGTTCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeec-----------c--ccccccc
Confidence            344444444332  2344555666666666555 4432  2345666666655555442           1  1255666


Q ss_pred             ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168          339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI  418 (710)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~  418 (710)
                      +++++++++|.++..  ..+.++++|+.++++++...+..+                                      +
T Consensus        86 ~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--------------------------------------~  125 (227)
T d1h6ua2          86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--------------------------------------L  125 (227)
T ss_dssp             SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--------------------------------------G
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccch--------------------------------------h
Confidence            666666666665532  235667777777777665543211                                      1


Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      ...+.++.+.++++.+...  ..+..+++|+.|++++|.+.+..+  +.+                              
T Consensus       126 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~--l~~------------------------------  171 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LAN------------------------------  171 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG--GTT------------------------------
T ss_pred             ccccchhhhhchhhhhchh--hhhccccccccccccccccccchh--hcc------------------------------
Confidence            2234445555555544422  124455556666666555442211  211                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY  570 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  570 (710)
                                   +++|+.|++++|++++.  ..+.++++|++|+|++|+++++.  .++++++|+.|++++
T Consensus       172 -------------l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         172 -------------LSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -------------CTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -------------cccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence                         33566666666666643  23677888888888888888774  377888888888863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.2e-17  Score=157.63  Aligned_cols=200  Identities=19%  Similarity=0.129  Sum_probs=114.9

Q ss_pred             CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcc-cCCccCcCCCCCCEEeccC-CccCCcCChhhhcCCCCCcE
Q 005168          230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG-SIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQF  307 (710)
Q Consensus       230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~  307 (710)
                      ++++|++++|.|+ .+|...+..+++|++|++++|.+.. +.+.+|.+++.++++.+.+ |.+. .++...|.++++|++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence            4555555555555 4444444445555555555555443 2334455555555555543 3444 445555555566666


Q ss_pred             EEccCCCCcCeeeccCccCccCc-CccccCCCccceeeCccCccccccchhhcCCC-CCCEEECCCCcCcccCCCCCCCC
Q 005168          308 LMLSNNSLKEGLYLTNNSLSGNI-PGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY-SLQILDISDNNISGSLPSCFHPL  385 (710)
Q Consensus       308 L~Ls~n~l~~~l~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~~  385 (710)
                      +++++|.+..           .. ...+..+..+..+...++.+....+..|.+++ .++.|++++|+++.+.+..+...
T Consensus       108 l~l~~~~l~~-----------~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~  176 (242)
T d1xwdc1         108 LLISNTGIKH-----------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT  176 (242)
T ss_dssp             EEEESCCCCS-----------CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred             cccchhhhcc-----------cccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch
Confidence            6555555432           11 11233344455555555566655555666554 67778888888887777777665


Q ss_pred             CcceEE-ccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccC
Q 005168          386 SIEQVH-LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  455 (710)
Q Consensus       386 ~L~~L~-l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  455 (710)
                      .+.++. +++|.             ++...++.|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus       177 ~l~~~~~l~~n~-------------l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         177 QLDELNLSDNNN-------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CEEEEECTTCTT-------------CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             hhhccccccccc-------------cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            555553 23333             3323345577888899999988888866666677777777666544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.9e-17  Score=152.90  Aligned_cols=165  Identities=24%  Similarity=0.266  Sum_probs=133.7

Q ss_pred             cCChhhhcCCCccEEecCCCcccc-cCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceee
Q 005168          413 SIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFI  491 (710)
Q Consensus       413 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (710)
                      .+|..+.  +++++|+|++|++++ ..+..|.++++|+.|++++|.+.+..+..|..+                      
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~----------------------   77 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------------------   77 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------------------
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc----------------------
Confidence            4454442  589999999999975 446678999999999999999998888888764                      


Q ss_pred             cCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCC
Q 005168          492 EGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN  571 (710)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  571 (710)
                                           +.|++|+|++|+++++.+.+|.++++|++|+|++|+|+++.+++|..+++|++|+|++|
T Consensus        78 ---------------------~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          78 ---------------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ---------------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ---------------------cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence                                 48999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          572 KLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       572 ~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      ++....+..+ -...++.+.+..|.+.|..|..+   ......++..|.+.|.++
T Consensus       137 ~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         137 PFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             ccccccchHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCC
Confidence            9985443221 12345666788888988877644   344455677777777643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.6e-16  Score=145.71  Aligned_cols=123  Identities=28%  Similarity=0.455  Sum_probs=82.3

Q ss_pred             hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168          419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF  498 (710)
Q Consensus       419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (710)
                      +.+++|++|++++|++++. + .+..+++|+.|++++|.+...  ..+..                              
T Consensus        87 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~------------------------------  132 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVH------------------------------  132 (210)
T ss_dssp             TTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGG------------------------------
T ss_pred             ccCcccccccccccccccc-c-ccccccccccccccccccccc--ccccc------------------------------
Confidence            4456677777777776632 2 466677777777777765421  11211                              


Q ss_pred             eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168          499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  578 (710)
Q Consensus       499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  578 (710)
                                   ++.++.+++++|.+++  +..+..+++|+++++++|+++++.  .+.++++|++|++++|+|+. +|
T Consensus       133 -------------l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         133 -------------LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             -------------CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG
T ss_pred             -------------cccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch
Confidence                         3467777777777763  334667788888888888887663  37778888888888888874 44


Q ss_pred             cccccCCCCCEEeccC
Q 005168          579 HQLVELKTLEVFSVAY  594 (710)
Q Consensus       579 ~~l~~l~~L~~L~l~~  594 (710)
                       .+..+++|++|+|++
T Consensus       195 -~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCSEEEEEE
T ss_pred             -hhcCCCCCCEEEccC
Confidence             477888888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=143.82  Aligned_cols=54  Identities=30%  Similarity=0.463  Sum_probs=38.9

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY  570 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  570 (710)
                      ++|+.+++++|++++..  .+.++++|++|+|++|.++++  +.+.++++|++|+|++
T Consensus       156 ~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         156 TKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccc--cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence            45666666666666432  367788888888888888876  3578888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.1e-15  Score=140.90  Aligned_cols=72  Identities=38%  Similarity=0.507  Sum_probs=45.0

Q ss_pred             ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEE
Q 005168          513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF  590 (710)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L  590 (710)
                      ++|+.|++++|++...  ..+..+++|++|++++|+++++.  .++++++|++|++++|+++. ++ .+..+++|+.|
T Consensus       128 ~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            3566666666665532  24666677777777777776652  36677777777777777763 33 35666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.1e-15  Score=140.93  Aligned_cols=49  Identities=31%  Similarity=0.502  Sum_probs=33.6

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEE
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL  566 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  566 (710)
                      +++.|++++|++++.  ..++++++|++|++++|+++++  +.++.+++|++|
T Consensus       151 ~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         151 SLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cccccccccccccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            566666666666543  2367778888888888888775  357777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.2e-15  Score=145.06  Aligned_cols=129  Identities=19%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEcc
Q 005168          183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNIS  262 (710)
Q Consensus       183 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~  262 (710)
                      +++|++++.+.......+..  ..+..+.+.+..+..... ......+|++||++++.++......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36677766554333322222  234556665554443222 223445788888888877644334455557788888888


Q ss_pred             CCcCcccCCccCcCCCCCCEEeccCC-ccCCcCChhhhcCCCCCcEEEccCCC
Q 005168          263 MNALDGSIPSSFGNMKFLQLLDLSNN-QLTGEIPEHLAVGCVNLQFLMLSNNS  314 (710)
Q Consensus       263 ~n~i~~~~~~~f~~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~Ls~n~  314 (710)
                      +|.+.+..+..+..+++|++|+++++ .+++.--..+..++++|++|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc
Confidence            88877666667777888888888875 44421112334467778887777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-14  Score=125.37  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=78.0

Q ss_pred             cccccEEECcCC-cCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEE
Q 005168          512 LSLLSGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF  590 (710)
Q Consensus       512 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L  590 (710)
                      ++++++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+++|.++++|++|+|++|+|+...++.+.. .+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            347888888765 478777888999999999999999999999999999999999999999999666666654 479999


Q ss_pred             eccCCccccccC
Q 005168          591 SVAYNNLSGEIL  602 (710)
Q Consensus       591 ~l~~N~l~~~~~  602 (710)
                      +|++|+|.|.|.
T Consensus       109 ~L~~Np~~C~C~  120 (156)
T d2ifga3         109 VLSGNPLHCSCA  120 (156)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             ccCCCcccCCch
Confidence            999999999883

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8e-15  Score=145.13  Aligned_cols=185  Identities=17%  Similarity=0.160  Sum_probs=119.3

Q ss_pred             CCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccC-cCcccCChhhhhcCCCc
Q 005168          178 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNN-NIRGHIPVEIGDVLPSL  256 (710)
Q Consensus       178 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~~~~~L  256 (710)
                      ...+|++||++++.++......++..+++|++|++.+|.+.+..+..+..+++|++|++++| .++...-..+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            33577888888777765554555577888888888888776666666777788888888875 44421112233447788


Q ss_pred             cEEEccCCc-Cccc-CCccC-cCCCCCCEEeccCCc--cCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcC
Q 005168          257 YVFNISMNA-LDGS-IPSSF-GNMKFLQLLDLSNNQ--LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP  331 (710)
Q Consensus       257 ~~L~L~~n~-i~~~-~~~~f-~~l~~L~~L~Ls~n~--l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~  331 (710)
                      ++|++++|. ++.. ....+ ...++|+.|+++++.  +++..-..++.++++|++|++++|...          ++...
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i----------td~~~  193 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----------KNDCF  193 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----------CGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC----------Cchhh
Confidence            888888763 3321 11122 234678888888653  332222233456788888888776421          22344


Q ss_pred             ccccCCCccceeeCccC-ccccccchhhcCCCCCCEEECCCC
Q 005168          332 GWLGNLTWLIHIIMPEN-HLEGPIPVEFCQLYSLQILDISDN  372 (710)
Q Consensus       332 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n  372 (710)
                      ..+..+++|++|++++| .+++.....+..+++|+.|++++|
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            56677888888888885 566555666777888888888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.8e-14  Score=126.81  Aligned_cols=127  Identities=18%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             hhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168          418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD  497 (710)
Q Consensus       418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (710)
                      +.+..++++|+|++|+|+.+ +..+..+++|+.|++++|.++.. + .|..                             
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~-----------------------------   61 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPL-----------------------------   61 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCC-----------------------------
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-Cccc-----------------------------
Confidence            44566788888888888754 55567788888888888887643 1 2322                             


Q ss_pred             eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCcCccc
Q 005168          498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNKLNGK  576 (710)
Q Consensus       498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~  576 (710)
                                    +++|+.|++++|++++..+..+..+++|++|++++|+++.+.. ..+..+++|++|++++|+++. 
T Consensus        62 --------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-  126 (162)
T d1a9na_          62 --------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-  126 (162)
T ss_dssp             --------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-
T ss_pred             --------------CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-
Confidence                          4478888888888876666666778888888888888876643 467777888888888888763 


Q ss_pred             CC----cccccCCCCCEEe
Q 005168          577 IP----HQLVELKTLEVFS  591 (710)
Q Consensus       577 ~~----~~l~~l~~L~~L~  591 (710)
                      .|    ..+..+++|++||
T Consensus       127 ~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         127 KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             STTHHHHHHHHCTTCSEET
T ss_pred             ccchHHHHHHHCCCcCeeC
Confidence            33    2466677787776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=126.21  Aligned_cols=129  Identities=24%  Similarity=0.243  Sum_probs=99.2

Q ss_pred             ccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168          225 IHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN  304 (710)
Q Consensus       225 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  304 (710)
                      +.++.++++|++++|+|+ .++. .+..+++|+.|++++|.|+.+  +.|..+++|++|++++|+++ .++..++.++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            556677888888888888 7764 344478899999999988865  35788899999999999998 788877778899


Q ss_pred             CcEEEccCCCCcCeeeccCccCccCc-CccccCCCccceeeCccCcccccc---chhhcCCCCCCEEEC
Q 005168          305 LQFLMLSNNSLKEGLYLTNNSLSGNI-PGWLGNLTWLIHIIMPENHLEGPI---PVEFCQLYSLQILDI  369 (710)
Q Consensus       305 L~~L~Ls~n~l~~~l~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l  369 (710)
                      |++|++++|.+..           .. ...+..+++|++|++++|.++...   +..+..+++|+.||-
T Consensus        89 L~~L~L~~N~i~~-----------~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVE-----------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCC-----------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccc-----------cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9999988888764           11 135778888888888888887543   235777888888873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=5.8e-13  Score=112.93  Aligned_cols=83  Identities=29%  Similarity=0.419  Sum_probs=43.2

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-cccccCCCCCEEec
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSV  592 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~l~~L~~L~l  592 (710)
                      .|++|++++|++++ +|..|..+++|++|++++|.|+++  +.+..+++|++|++++|+|....+ ..+..+++|+.+++
T Consensus        21 ~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCc-chhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            44455555555542 334455555555555555555544  235555555555555555553321 34555555555566


Q ss_pred             cCCcccc
Q 005168          593 AYNNLSG  599 (710)
Q Consensus       593 ~~N~l~~  599 (710)
                      ++|+++.
T Consensus        98 ~~N~i~~  104 (124)
T d1dcea3          98 QGNSLCQ  104 (124)
T ss_dssp             TTSGGGG
T ss_pred             CCCcCCc
Confidence            5555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.3e-13  Score=111.64  Aligned_cols=101  Identities=32%  Similarity=0.383  Sum_probs=52.9

Q ss_pred             EEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCC
Q 005168          209 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN  288 (710)
Q Consensus       209 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n  288 (710)
                      .|++++|+++...  .+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+++. | .+.++++|++|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~-l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchhhhhh-hhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            4555555554321  2455555666666666665 55544433 55566666666655533 2 3555556666666666


Q ss_pred             ccCCcCCh-hhhcCCCCCcEEEccCCCCc
Q 005168          289 QLTGEIPE-HLAVGCVNLQFLMLSNNSLK  316 (710)
Q Consensus       289 ~l~~~i~~-~~~~~l~~L~~L~Ls~n~l~  316 (710)
                      +++ .++. ..+..+++|++|++++|++.
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            555 3332 23344555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=114.58  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=96.8

Q ss_pred             cccEEECcCCcCCCCCCccccccCCCCEEeCCCc-cCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168          514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN-NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV  592 (710)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l  592 (710)
                      ..+.++.+++.+. ..|..+.++++|++|++++| .++.+.+++|.++++|+.|++++|+|+.+.+++|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4566888888887 45777889999999999876 599999999999999999999999999888999999999999999


Q ss_pred             cCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168          593 AYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP  626 (710)
Q Consensus       593 ~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  626 (710)
                      ++|.+....+.++.. ..+..+.+.+|||.|+|.
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGG
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcccCCch
Confidence            999999766665543 368889999999999984

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=1.1e-13  Score=141.47  Aligned_cols=67  Identities=18%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             ccccCCCCEEeCCCccCCCCCch----hhcC--CccCCEEeCcCCcCccc----CCccc-ccCCCCCEEeccCCcccc
Q 005168          533 IGNLTRIQTLNLSYNNLTGLIPS----TFSN--LKHIESLDLSYNKLNGK----IPHQL-VELKTLEVFSVAYNNLSG  599 (710)
Q Consensus       533 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~--l~~L~~L~Ls~N~i~~~----~~~~l-~~l~~L~~L~l~~N~l~~  599 (710)
                      +...++|++|+|++|.|++....    ++..  .+.|++|++++|+|...    +...+ .+.+.|+.|++++|.+..
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            44555666666666666543221    2222  24577777777776531    12222 245677777777777754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=8.6e-13  Score=134.53  Aligned_cols=244  Identities=16%  Similarity=0.146  Sum_probs=140.7

Q ss_pred             hhccCCCCCEEECCCCccccc----cChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCE
Q 005168           16 SLTHLSSLRSLNLNGNSLEGS----IDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEV   91 (710)
Q Consensus        16 ~~~~l~~L~~L~Ls~n~i~~~----i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~   91 (710)
                      ++.....|++|+|++|.+...    +. ..+...++|+.++++++.........      ......+.. .+..+++|++
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~l~l~~~~~~~~~~~~------~~~~~~l~~-~l~~~~~L~~   97 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEI------PEALRLLLQ-ALLKCPKLHT   97 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGS------HHHHHHHHH-HHTTCTTCCE
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHH-HHHHhCCCCCEEECCCCccccccccc------chHHHHHHH-HHhhCCCccc
Confidence            456678888888888877521    22 34567788888888876543111000      000001222 4556677777


Q ss_pred             EEccCCcCCCC------------CCCcEEEccccccccccCc------------ccccCCCCCcEEEccCCccccccccc
Q 005168           92 LDMSYNKIDNL------------VVPQELRLSDNHFRIPISL------------EPLFNHSRLKIFHAKNNQMNAEITES  147 (710)
Q Consensus        92 L~Ls~n~l~~~------------~~L~~L~L~~~~l~~~~~~------------~~l~~l~~L~~L~L~~n~~~~~~~~~  147 (710)
                      |++++|.+...            ++|++|++++|.+......            ......+.|+.+.+++|.+.......
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            77777776553            6777777777765421000            01135678899999888765332211


Q ss_pred             ccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCC----hhHhhcCCCCcEEEccCCccccc---
Q 005168          148 HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP----NWLLENNTKLATLFLVNDSLAGP---  220 (710)
Q Consensus       148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~---  220 (710)
                                              +...+..++.++.|++++|.+.....    ...+..+++|+.|++++|.+...   
T Consensus       178 ------------------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         178 ------------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             ------------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             ------------------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence                                    22233445566666666666553211    11124566677777777665432   


Q ss_pred             -CccCccCCCCCCEEEcccCcCcccCChhhhh-----cCCCccEEEccCCcCcccC----CccCc-CCCCCCEEeccCCc
Q 005168          221 -FWLPIHSHKRLGILDISNNNIRGHIPVEIGD-----VLPSLYVFNISMNALDGSI----PSSFG-NMKFLQLLDLSNNQ  289 (710)
Q Consensus       221 -~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-----~~~~L~~L~L~~n~i~~~~----~~~f~-~l~~L~~L~Ls~n~  289 (710)
                       +...+..+++|++|++++|.+++.-...++.     ..+.|++|++++|.|....    ...+. ++++|++|++++|+
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence             2234556777778888877776332222221     1356888888888876422    22232 56788899999998


Q ss_pred             cC
Q 005168          290 LT  291 (710)
Q Consensus       290 l~  291 (710)
                      +.
T Consensus       314 ~~  315 (344)
T d2ca6a1         314 FS  315 (344)
T ss_dssp             SC
T ss_pred             CC
Confidence            86

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.8e-13  Score=126.89  Aligned_cols=130  Identities=24%  Similarity=0.327  Sum_probs=83.7

Q ss_pred             CChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168          414 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG  493 (710)
Q Consensus       414 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (710)
                      +|..+..+++|++|+|++|+|+.. + .+..+++|+.|++++|.++. +|..+..                         
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~-------------------------   91 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAV-------------------------   91 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHH-------------------------
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-ccccccc-------------------------
Confidence            445677788888888888888743 3 47777888888888887763 2221111                         


Q ss_pred             CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCc
Q 005168          494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNK  572 (710)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~  572 (710)
                                        ++.|+.|++++|.++..  ..+..+++|+.|++++|+++.+.. ..+..+++|+.|++++|+
T Consensus        92 ------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          92 ------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ------------------ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence                              33677777777777643  346667777777777777765532 456677777777777777


Q ss_pred             CcccCCcc----------cccCCCCCEEe
Q 005168          573 LNGKIPHQ----------LVELKTLEVFS  591 (710)
Q Consensus       573 i~~~~~~~----------l~~l~~L~~L~  591 (710)
                      +....+..          +..+++|+.||
T Consensus       152 l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         152 LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            65433321          44566666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=1.5e-12  Score=120.49  Aligned_cols=132  Identities=24%  Similarity=0.258  Sum_probs=103.7

Q ss_pred             CccEEecCCC--cccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168          423 QLSHLILGHN--NLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT  500 (710)
Q Consensus       423 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (710)
                      ..+.+++.+.  .+. ..+..+..+++|++|++++|.++.. + .+..                                
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~--------------------------------   68 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSG--------------------------------   68 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHH--------------------------------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccC--------------------------------
Confidence            3455566543  232 3456788999999999999999743 2 2433                                


Q ss_pred             ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-c
Q 005168          501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-H  579 (710)
Q Consensus       501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~  579 (710)
                                 +++|+.|++++|.++. ++..+..+++|++|++++|.++.+  +.+..+++|+.|++++|+|+.... +
T Consensus        69 -----------l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~  134 (198)
T d1m9la_          69 -----------MENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEID  134 (198)
T ss_dssp             -----------HTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHH
T ss_pred             -----------CccccChhhccccccc-cccccccccccccccccccccccc--ccccccccccccccccchhccccccc
Confidence                       5599999999999984 455566678999999999999976  568889999999999999985433 4


Q ss_pred             ccccCCCCCEEeccCCccccccCC
Q 005168          580 QLVELKTLEVFSVAYNNLSGEILE  603 (710)
Q Consensus       580 ~l~~l~~L~~L~l~~N~l~~~~~~  603 (710)
                      .+..+++|+.|++++|++....+.
T Consensus       135 ~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccCCCccceeecCCCccccCccc
Confidence            688999999999999999875543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.7e-08  Score=84.62  Aligned_cols=62  Identities=32%  Similarity=0.340  Sum_probs=27.9

Q ss_pred             CCCccEEEccCCcCcccC--CccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCC
Q 005168          253 LPSLYVFNISMNALDGSI--PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL  315 (710)
Q Consensus       253 ~~~L~~L~L~~n~i~~~~--~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l  315 (710)
                      +++|++|+|++|+|+.+.  +..+..+++|+.|++++|.++ .++...+.+..+|++|++++|++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCc
Confidence            455555555555554332  122344455555555555554 34332222333444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.2e-07  Score=80.11  Aligned_cols=64  Identities=27%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             cccccEEECcCCcCCCCC--CccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168          512 LSLLSGLYLSCNKLIGHI--PPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG  575 (710)
Q Consensus       512 l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  575 (710)
                      ++.|++|+|++|+++...  +..+..+++|+.|+|++|.|+.+.+-.+.....|+.|++++|++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            445555666666555432  2334455555555555555555544333333445555555555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=2.1e-05  Score=69.15  Aligned_cols=39  Identities=13%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CCCccEEecCCC-ccccc----CCcccCCCCCCCEEEccCCccc
Q 005168          421 LSQLSHLILGHN-NLEGE----VPVQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       421 l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~  459 (710)
                      .+.|++|+|+++ .+...    +..++...+.|+.|+|++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            467777777763 34321    1224555667777777777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=0.00015  Score=63.54  Aligned_cols=107  Identities=8%  Similarity=0.025  Sum_probs=60.0

Q ss_pred             ccCCCCCEEECCCC-ccccc----cChhhhcCCCCCCEEeCCCCCCC------------CcccccEEecCCCcceee---
Q 005168           18 THLSSLRSLNLNGN-SLEGS----IDVKEFDSLRDLEELDIGENKID------------KFVVSKELYLDDTGFKGT---   77 (710)
Q Consensus        18 ~~l~~L~~L~Ls~n-~i~~~----i~~~~f~~l~~L~~L~Ls~n~l~------------~l~~l~~L~L~~~~~~~~---   77 (710)
                      .+.+.|++|+|+++ .++..    +- .++...++|++|+|++|.+.            ..+.+++|+|++|.+...   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~-~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHH-HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            45689999999874 45421    22 45677888999999998876            234455555555554432   


Q ss_pred             -cCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEcccccccc---ccCcccccCCCCCcEEEccCCc
Q 005168           78 -LDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI---PISLEPLFNHSRLKIFHAKNNQ  139 (710)
Q Consensus        78 -i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~l~~L~~L~L~~n~  139 (710)
                       +.. ++...+.|++|++++|.+..+             ..   ..-...+...+.|+.|+++.+.
T Consensus        91 ~l~~-aL~~n~sL~~L~l~~n~~~~~-------------g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLR-STLVTQSIVEFKADNQRQSVL-------------GNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHH-HTTTTCCCSEEECCCCSSCCC-------------CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHH-HHHhCCcCCEEECCCCcCCCc-------------cHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             111 333444455555555443321             00   0011224456777888776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.67  E-value=0.00053  Score=59.77  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             cchhhccCCCCCEEECCC-Cccccc----cChhhhcCCCCCCEEeCCCCCCC------------CcccccEEecCCCcce
Q 005168           13 ILSSLTHLSSLRSLNLNG-NSLEGS----IDVKEFDSLRDLEELDIGENKID------------KFVVSKELYLDDTGFK   75 (710)
Q Consensus        13 ~~~~~~~l~~L~~L~Ls~-n~i~~~----i~~~~f~~l~~L~~L~Ls~n~l~------------~l~~l~~L~L~~~~~~   75 (710)
                      ......+.+.|++|++++ +.++..    +- .++...++|++|++++|.++            ..+.++.+++++|.+.
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHH-HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344456779999999997 456421    22 45568899999999999876            2344455555555443


Q ss_pred             eecCH---HhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccc---cCcccccCCCCCcEEEccCCcc
Q 005168           76 GTLDI---REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIP---ISLEPLFNHSRLKIFHAKNNQM  140 (710)
Q Consensus        76 ~~i~~---~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~---~~~~~l~~l~~L~~L~L~~n~~  140 (710)
                      .....   ..+...++|+.++|+              +++|.+...   .-...+...+.|+.|+++.+..
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~--------------l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRID--------------NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECC--------------CCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             chhHHHHHHHHHhCccccEEeec--------------cCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            22111   133344444443332              122333211   1112345677888888877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.46  E-value=0.00022  Score=62.33  Aligned_cols=41  Identities=10%  Similarity=0.070  Sum_probs=24.5

Q ss_pred             hcCCCccEEecCC-Cccccc----CCcccCCCCCCCEEEccCCccc
Q 005168          419 GELSQLSHLILGH-NNLEGE----VPVQLCELNQLQLLDLSNNSLH  459 (710)
Q Consensus       419 ~~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  459 (710)
                      .+.++|++|++++ +.++..    +..++...+.|++|++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3456777777776 344321    2233456677777777777664