Citrus Sinensis ID: 005207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | 2.2.26 [Sep-21-2011] | |||||||
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.688 | 0.426 | 0.293 | 7e-55 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.397 | 0.148 | 0.36 | 5e-37 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.638 | 0.348 | 0.304 | 1e-35 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.433 | 0.238 | 0.331 | 4e-32 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.373 | 0.193 | 0.336 | 2e-30 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.363 | 0.159 | 0.318 | 2e-25 | |
| Q9RBS2 | 1024 | Protein PopC OS=Ralstonia | yes | no | 0.521 | 0.361 | 0.277 | 2e-21 | |
| P0CB16 | 1201 | Putative disease resistan | no | no | 0.519 | 0.306 | 0.253 | 1e-17 | |
| O82500 | 1095 | Putative disease resistan | no | no | 0.392 | 0.253 | 0.256 | 2e-17 | |
| A4D1F6 | 860 | Leucine-rich repeat and d | yes | no | 0.469 | 0.387 | 0.251 | 3e-14 |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 171/583 (29%), Positives = 266/583 (45%), Gaps = 95/583 (16%)
Query: 3 ARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLE 62
A+ + G+ +E + + Y + + S +A M L + + ++
Sbjct: 514 AKEVEEVMSNNTGTMAMEAIWVSSY---SSTLRFSNQAVKNMKRLRVFNMGRSSTHYAID 570
Query: 63 YLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE 122
YL N LR YP +S PS +L +V ++ ++ + LW KHL L+ + LS S+
Sbjct: 571 YLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSK 630
Query: 123 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPH 182
L +TPDFT PN L+ + L C L + H
Sbjct: 631 RLTRTPDFTGMPN------------------------------LEYVNLYQCSNLEEVHH 660
Query: 183 VVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242
+G C ++ + L LNDCK+L P + + L L L
Sbjct: 661 SLG---CCSKV--------------------IGLYLNDCKSLKRFPCV--NVESLEYLGL 695
Query: 243 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSS 301
C L+K P+I M+ ++++ G+ I E+PSSI + + L L + KN +PSS
Sbjct: 696 RSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSS 755
Query: 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFS 361
I LKSL +L++SGC KLE++P+ +G +++L D S+T + RPPSS+ + L L F
Sbjct: 756 ICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFR 815
Query: 362 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421
G H P P GL SL L+LS C L +G +P +IG
Sbjct: 816 GFKD-----GVHFEFP---------------PVAEGLHSLEYLNLSYCNLIDGGLPEEIG 855
Query: 422 NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSL 481
+L SL +L LS+NNF LP+SI L L+ L+++DC+RL LP+LPP + + V+ C
Sbjct: 856 SLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVD-CHMA 914
Query: 482 VTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFS-------TV 534
+ + L + ++ D+ N +A M + +S D S TV
Sbjct: 915 LKFIHYLVTKRKKLHRVKLDDAHNDTMYNLFAYTM----FQNISSMRHDISASDSLSLTV 970
Query: 535 IPGS----KIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAIC 573
G KIP WF +Q SS++V P Y +K +G+A+C
Sbjct: 971 FTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 43/325 (13%)
Query: 15 GSELVEGMIID--DYFFPVNEVHLSAKAFSLMTNLGLLKI--------NNVQLLEGLEYL 64
G+ +EG+ +D + F N F M NL LLK+ + V +GLEYL
Sbjct: 1149 GTSAIEGIFLDMLNLKFDAN-----PNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYL 1203
Query: 65 SNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIK--------HLNMLKVM 116
+KLRLL W YPL SLP + + +VE + S ++LWKG K L LK M
Sbjct: 1204 PSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKM 1263
Query: 117 KLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------------- 163
+LS+S+ L K P + A NLE + LEGC L + S+ KL+F+
Sbjct: 1264 RLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPS 1323
Query: 164 ----ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLN 219
ESL++L LSGC KL FP + + ++EL + GT I+E+P SI++L L +L L
Sbjct: 1324 MVDLESLEVLNLSGCSKLGNFPEISPN---VKELYMGGTMIQEIPSSIKNLVLLEKLDLE 1380
Query: 220 DCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIE 279
+ ++L +LP +I + L L LSGC L++FP M+ L L+L T I E+PSSI
Sbjct: 1381 NSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSIS 1440
Query: 280 LLPGLELLNLNDCKNFARVPSSING 304
L L+ L D + + V ++ N
Sbjct: 1441 YLTALDELLFVDSRRNSPVVTNPNA 1465
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 161/529 (30%), Positives = 247/529 (46%), Gaps = 76/529 (14%)
Query: 10 VEKKYGSELVEGMIID-DYFFPVNEVHLSAKAFSLMTNLGLLKINNV-QLLEGLEYLSNK 67
V +K G+E + G+ + + +F + + ++F M NL L+I L + L YL K
Sbjct: 510 VTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEIGYYGDLPQSLVYLPLK 569
Query: 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT 127
LRLLDW PLKSLPS + + +V M YS++E+LW+G L LK M L +S NL +
Sbjct: 570 LRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEI 629
Query: 128 PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 187
PD + A NLEEL L GC L + S+ KLI+++ +S C KL FP + ++
Sbjct: 630 PDLSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLD------MSDCKKLESFPTDL-NL 682
Query: 188 ECLQELLLDGT-DIKELPL------SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240
E L+ L L G +++ P ++ G ++ + DC +LP + C
Sbjct: 683 ESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDC---- 738
Query: 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS 300
L+ C + P E L+ LN+ G ++ I+ L LE ++L++ +N +P
Sbjct: 739 -LTRCMPCEFRP------EQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPD 791
Query: 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE-TAVRRPPSSVFLMKNLRTLS 359
K L++L L+ C L +P T+G + L L++ E T + P+ V L +L TL
Sbjct: 792 LSKATK-LESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNL-SSLETLD 849
Query: 360 FSGCNGPPS----------------------SASWHLHLPFNLMGKSSCLVALMLPSLSG 397
SGC+ S S +LH L K C +LP+
Sbjct: 850 LSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMK-KCTGLEVLPTDVN 908
Query: 398 LRSLTKLDLSDCG----------------LGEGAIPS--DIGNLHSLNELYLSK-NNFVT 438
L SL LDLS C L AI D+ +L L L+ + VT
Sbjct: 909 LSSLETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVT 968
Query: 439 LPASINSLLNLKELEMEDCKRLQFLPQLPPN---IIFVKVNGCSSLVTL 484
LP +I +L L EM++C L+ LP + N ++ + ++GCSSL T
Sbjct: 969 LPTTIGNLQKLVSFEMKECTGLEVLP-IDVNLSSLMILDLSGCSSLRTF 1016
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 190/383 (49%), Gaps = 76/383 (19%)
Query: 11 EKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI--NNVQL-------LEGL 61
++ GSE +EG+ +D + L AF M NL LLKI +N ++ L
Sbjct: 493 KRAQGSEEIEGLFLDTSNLRFD---LQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTGSL 549
Query: 62 EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHS 121
L N+LRLL W YPLKSLP N +VE M YS++++LW G K+L ML+ ++L HS
Sbjct: 550 HSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHS 609
Query: 122 ENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP 181
+L+ D +A NLE + L+GCT+L+ + +L+ L+++ LSGC+K++
Sbjct: 610 HHLVDIDDLLKAENLEVIDLQGCTRLQNFPAA----GRLL---RLRVVNLSGCIKIKSVL 662
Query: 182 HVVGSMECLQELLLDGTDIKELPLSI---------------------------------- 207
+ ++E +L L GT I LP+S
Sbjct: 663 EIPPNIE---KLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSS 719
Query: 208 -EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL---KKFPQIVTTMEDLSE 263
+ L L+ L L DC L SLP +++ L L LSGCS L + FP+ L +
Sbjct: 720 CQDLGKLICLELKDCSCLQSLP-NMANLD-LNVLDLSGCSSLNSIQGFPRF------LKQ 771
Query: 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323
L L GT+I EVP +L LE+LN + + R ++ L+ LK L+LSGC +LE +
Sbjct: 772 LYLGGTAIREVP---QLPQSLEILNAHG--SCLRSLPNMANLEFLKVLDLSGCSELETIQ 826
Query: 324 DTLGQVESLEELDISETAVRRPP 346
G +L+EL + T +R P
Sbjct: 827 ---GFPRNLKELYFAGTTLREVP 846
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 162/348 (46%), Gaps = 83/348 (23%)
Query: 2 EARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI--------- 52
E E+ E +EGM +D + H+ AF M NL L KI
Sbjct: 477 ENEEQKTTFERAQVPEEIEGMFLDTSNLSFDIKHV---AFDNMLNLRLFKIYSSNPEVHH 533
Query: 53 -NNVQLLEG-LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
NN L+G L L N LRLL W YPL+ LP N +VE M YS++++LW G K L
Sbjct: 534 VNN--FLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDL 591
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPS-LLLHNKLIFVESLKIL 169
MLK ++L HS+ L+ D +A NLE + L+GCT+L+ + LLH L+++
Sbjct: 592 EMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPATGQLLH--------LRVV 643
Query: 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSI-----EHLFGLVQ--------- 215
LSGC +++ FP + ++E L L GT I ELPLSI L L+
Sbjct: 644 NLSGCTEIKSFPEIPPNIETLN---LQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVS 700
Query: 216 ----------------------------LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247
L LNDC L SLP + + + L+ L LSGCS+
Sbjct: 701 NLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLPNMV-NLELLKALDLSGCSE 759
Query: 248 LKK---FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDC 292
L+ FP+ +L EL L GT++ +VP +L LE N + C
Sbjct: 760 LETIQGFPR------NLKELYLVGTAVRQVP---QLPQSLEFFNAHGC 798
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 155/327 (47%), Gaps = 69/327 (21%)
Query: 24 IDDYFFPVNEVHLSAK--AFSLMTNLGLLKINN--------VQLLEGLEYLSNKLRLLDW 73
I+ F + V K AF M NL LKI N + +GL+ L +LRLL W
Sbjct: 519 IESIFLDTSNVKFDVKHDAFKNMFNLKFLKIYNSCSKYISGLNFPKGLDSLPYELRLLHW 578
Query: 74 HRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEA 133
YPL+SLP + +V+ M YS++ +L +K L MLK + LSHS L++ A
Sbjct: 579 ENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYA 638
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
N+E + L+GCT L++ + L N L+++ LSGC +++ F V ++E EL
Sbjct: 639 QNIELIDLQGCTGLQRFPDTSQLQN-------LRVVNLSGCTEIKCFSGVPPNIE---EL 688
Query: 194 LLDGTDIKELPL-----------------------------------------SIEHLFG 212
L GT I+E+P+ S H+ G
Sbjct: 689 HLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMG 748
Query: 213 -LVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI 271
LV L + C NL LP + S + L+ L LSGCS+L+K I+ +L +L + GT+I
Sbjct: 749 KLVCLNMKYCSNLRGLPDMV-SLESLKVLYLSGCSELEK---IMGFPRNLKKLYVGGTAI 804
Query: 272 TEVPSSIELLPGLELLNLNDCKNFARV 298
E+P +L LE LN + CK+ +
Sbjct: 805 RELP---QLPNSLEFLNAHGCKHLKSI 828
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 201/425 (47%), Gaps = 55/425 (12%)
Query: 68 LRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIK 126
L+ L PL+ LP+ LD++ + +++E+L GI L LK + L + L +
Sbjct: 295 LQRLTIEDSPLEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLPALKSLSLQDNPKLER 354
Query: 127 TPDFTEAPNLEELYLEGCTKLRKVH--PSLLLHNKLIFVESLKILILSGCLKLRKFPHVV 184
P +EEL L G ++H PS + SL+ L + L K P
Sbjct: 355 LPKSLG--QVEELTLIGG----RIHALPSA------SGMSSLQKLTVDNS-SLAKLPADF 401
Query: 185 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244
G++ L + L T +++LP SI +LF L L+L D L SLP + L+ L L+G
Sbjct: 402 GALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNG 461
Query: 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304
+++ + P + L L +D T++ +P+ L L L+L++ + +P++
Sbjct: 462 -NRIHELPSM-GGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQ-LRELPANTGN 518
Query: 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGC 363
L +LKTL+L G +L +P +LG + LEEL + ++V PP + L+TL+
Sbjct: 519 LHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPP--MGPGSALKTLTVE-- 574
Query: 364 NGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLR--SLTKLDLSDCGLGEGAIPSDIG 421
N P +S +P+ G++ LT+L LS+ L A+PS IG
Sbjct: 575 NSPLTS----------------------IPADIGIQCERLTQLSLSNTQL--RALPSSIG 610
Query: 422 NLHSLNELYLSKNNFVTL--PASINSLLNLKELEMEDCKRLQFLPQLP---PNIIFVKVN 476
L +L L L N + L + + L +++++++ C RL LP P + + ++
Sbjct: 611 KLSNLKGLTLKNNARLELLSESGVRKLESVRKIDLSGCVRLTGLPSSIGKLPKLRTLDLS 670
Query: 477 GCSSL 481
GC+ L
Sbjct: 671 GCTGL 675
|
Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 189/446 (42%), Gaps = 78/446 (17%)
Query: 85 LQLDKIVEFKMCYSRIEELWKGIKHLNMLK---VMKLSHSENLIKTPD--FTEAPNLEEL 139
L L K+ + ++ R +L I L+ L+ V+++S + +L+ PD F L+ L
Sbjct: 462 LSLSKLKKLRVLVIRDCDLIDNIDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSL 521
Query: 140 YLEG-----------------CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPH 182
L G C LR L N ++ L+++ + G KL +
Sbjct: 522 NLSGLAIKSSPSTIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGARKLESYFD 581
Query: 183 VV-------------GSMECLQELLLDGTDIKELPL--------SIEHLFGLVQLTLNDC 221
V ++ L+ L T I LP+ + L +L L +C
Sbjct: 582 RVKDWKDYKGKNKNFAQLQLLEHLDFSETKIIRLPIFHLKDSTNDFSTMPILTRLLLRNC 641
Query: 222 KNLSSLPVAISSFQCLRNLK-LSGCSKLKKFPQIVTTMEDLSEL---NLDGTSITEVPSS 277
L LP + L NL+ L C + +E+ EL ++ TS+ E+ +
Sbjct: 642 TRLKRLP----QLRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTSLPELADT 697
Query: 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI 337
I + L L L +C +PS I L L+ ++SGC KL+N+ + G++ L E+++
Sbjct: 698 IADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNINGSFGEMSYLHEVNL 756
Query: 338 SETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 397
SET + P + + NL+ L C+ + LP+L
Sbjct: 757 SETNLSELPDKISELSNLKELIIRKCSKLKT-----------------------LPNLEK 793
Query: 398 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457
L +L D+S C E I NL L+++ LS+ N LP I+ L NLKEL + +C
Sbjct: 794 LTNLEIFDVSGCTELE-TIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNC 852
Query: 458 KRLQFLPQLP--PNIIFVKVNGCSSL 481
+L+ LP L +++ V+GC++L
Sbjct: 853 SKLKALPNLEKLTHLVIFDVSGCTNL 878
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 65/343 (18%)
Query: 1 MEARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKIN------- 53
M A+ + + G+ V G+ +D E+++S K F M NL LK
Sbjct: 511 MNAKETCGVLSNNTGTGTVLGISLDMCEIK-EELYISEKTFEEMRNLVYLKFYMSSPIDD 569
Query: 54 --NVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIK 108
V+L EGL YL +LRLL W YPL+ PS+ + + +VE M +S++++LW G++
Sbjct: 570 KMKVKLQLPEEGLSYLP-QLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQ 628
Query: 109 HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE---- 164
L L+ M L+ S NL P+ EA L L L C L ++ S+ LI +E
Sbjct: 629 PLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCC 688
Query: 165 -------------SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 211
SL++L C +L+ FP + ++ L L GT I E+P S+++
Sbjct: 689 KKLEIIPTNINLPSLEVLHFRYCTRLQTFPEISTNIRLLN---LIGTAITEVPPSVKYWS 745
Query: 212 GLVQLTLN--DCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269
+ ++ + K L +P + CLR +
Sbjct: 746 KIDEICMERAKVKRLVHVPYVLEKL-CLR----------------------------ENK 776
Query: 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 312
+ +P ++ LP L++++++ C N +P + +L +N
Sbjct: 777 ELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVN 819
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A4D1F6|LRRD1_HUMAN Leucine-rich repeat and death domain-containing protein 1 OS=Homo sapiens GN=LRRD1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 197/457 (43%), Gaps = 124/457 (27%)
Query: 49 LLKINNVQLLEG-LEYLSNK------LRLLDWHRYPLKSLPSNLQLDKIVE-FKMCYSRI 100
LLKI +QL + LE +S+K LR+L + LK++P + ++E + +++
Sbjct: 348 LLKIKELQLADNKLEVISHKIENFRELRILILDKNLLKNIPEKISCCAMLECLSLSDNKL 407
Query: 101 EELWKGIKHLNMLKVMKLSHSENLIKTPD-----------------FTEAPNLEELYLEG 143
EL K I LN L+ + ++ + N++K D T+ P + ++
Sbjct: 408 TELPKYIHKLNNLRKLHVNRN-NMVKITDCISHLNNICSLEFSGNIITDVP----IEIKN 462
Query: 144 CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
C K+ K+ S +NK+++ FP + +++ L L ++G I E+
Sbjct: 463 CQKIIKIELS---YNKIMY-----------------FPLGLCALDSLYYLSVNGNYISEI 502
Query: 204 PLSI--------------------EHLFGLVQLTLNDC--KNLSSLPVAISSFQCLRNLK 241
P+ I EH L+ L D + +P +IS+ L L
Sbjct: 503 PVDISFSKQLLHLELSENKLLIFSEHFCSLINLKYLDLGKNQIKKIPASISNMISLHVLI 562
Query: 242 LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301
L C+K + FP+ + T+E+L L+L + ++ S I L G++ LN + + F P
Sbjct: 563 LC-CNKFETFPRELCTLENLQVLDLSENQLQKISSDICNLKGIQKLNFSSNQ-FIHFPIE 620
Query: 302 INGLKSLKTLNLSGCC--KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLS 359
+ L+SL+ LN+S KL +P L + L+ELDIS A+R P ++ ++NL +S
Sbjct: 621 LCQLQSLEQLNISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNL--VS 678
Query: 360 FSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419
N S +LP PSL L L +L+LS
Sbjct: 679 LHAYNNQIS------YLP---------------PSLLSLNDLQQLNLSG----------- 706
Query: 420 IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 456
NN LP++I ++ +LKE+ +D
Sbjct: 707 --------------NNLTALPSAIYNIFSLKEINFDD 729
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| 296090591 | 771 | unnamed protein product [Vitis vinifera] | 0.856 | 0.787 | 0.439 | 1e-122 | |
| 359486075 | 1291 | PREDICTED: TMV resistance protein N-like | 0.892 | 0.490 | 0.390 | 1e-114 | |
| 451798988 | 1219 | TMV resistance protein N-like protein 6 | 0.782 | 0.455 | 0.414 | 1e-113 | |
| 147770134 | 1414 | hypothetical protein VITISV_040107 [Viti | 0.892 | 0.447 | 0.388 | 1e-112 | |
| 359486073 | 1296 | PREDICTED: TMV resistance protein N-like | 0.897 | 0.490 | 0.391 | 1e-112 | |
| 451798990 | 1335 | TMV resistance protein N-like protein 7 | 0.908 | 0.482 | 0.382 | 1e-112 | |
| 359493267 | 1417 | PREDICTED: TMV resistance protein N-like | 0.929 | 0.465 | 0.370 | 1e-107 | |
| 359486071 | 1261 | PREDICTED: TMV resistance protein N-like | 0.921 | 0.517 | 0.382 | 1e-106 | |
| 359487015 | 1610 | PREDICTED: TMV resistance protein N-like | 0.929 | 0.409 | 0.368 | 1e-106 | |
| 359496026 | 1250 | PREDICTED: TMV resistance protein N-like | 0.843 | 0.478 | 0.384 | 1e-105 |
| >gi|296090591|emb|CBI40960.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 289/658 (43%), Positives = 380/658 (57%), Gaps = 51/658 (7%)
Query: 59 EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 118
+ E+ SNKLR L WHRYPLKSLPSN +VE +C +EELWKG+KH+ L+ + L
Sbjct: 33 QDFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLECIDL 92
Query: 119 SHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV--------------- 163
SHS+ L++TPDF+ PNLE L EGCT LR+VH SL + +KLIF+
Sbjct: 93 SHSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSI 152
Query: 164 --ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221
ESLK+LILSGC KL KFP ++G + L EL L+GT I ELP SI + LV L + DC
Sbjct: 153 ELESLKVLILSGCSKLDKFPEILGYLPNLLELHLNGTAITELPSSIGYATQLVSLDMEDC 212
Query: 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281
K SLP I + L+ LKLSGC+K + FP+I+ ME L EL LDGT+I E+P S+E L
Sbjct: 213 KRFKSLPCCIYKLKSLKILKLSGCAKFESFPEILENMEGLRELFLDGTAIKELPLSVEHL 272
Query: 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341
GL LLNL +C+ +PSSI LKSL TL LSGC +LE +P+ LG +E L EL +A
Sbjct: 273 NGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECLVELVADGSA 332
Query: 342 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 401
V +PPSS+ L++NL+ LSF GCNG PSS + + S LPSLSGL SL
Sbjct: 333 VIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWSMLCLRRISDSTGFRLPSLSGLCSL 392
Query: 402 TKLDLSDCGLGEGAIPSDIGN-LHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 460
+L+LSDC + EGA+P+D+G L SL L L N+FVTLP I+ L NLK L + CKRL
Sbjct: 393 KQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRL 452
Query: 461 QFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREY 520
Q LP LPPNI + C+SL TL +G+ C + W Y
Sbjct: 453 QELPMLPPNINRINAQNCTSLETL---------SGLSAPCWLAFTNSFRQNWG---QETY 500
Query: 521 LEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPR 580
L VS + F+T +PG+ IP+WF Q G SI V PS+ YN N +G+A+C VF + +
Sbjct: 501 LAEVSR-IPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDN-FLGFAMCIVFAL-K 557
Query: 581 HSTRIKKRRHSYELQCC-MDGSDRGFF---ITFGGKFSHSG---SDHLWLLFLS--PREC 631
+ + EL+ +D S+ G F I + G G SDHLWL + P +
Sbjct: 558 EPNQCSRGAMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDHLWLGYHPNFPIKK 617
Query: 632 YDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWT 689
D W + +H K SF A G +VK CGF VYM ++ + + +++
Sbjct: 618 DDMDWPNKLSHIKASFVIA---------GIPHEVKWCGFRLVYMEDLNDDNSKITKYS 666
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 283/724 (39%), Positives = 393/724 (54%), Gaps = 91/724 (12%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQL----------------- 57
G+E VEGM+++ + E+H S F+ M L +L+ + Q+
Sbjct: 530 GTEAVEGMVLN--LSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPY 587
Query: 58 ------LEG-LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
L G ++LSN LR L W YPLKSLPSN +K++E KMC+S++E+LW+G K
Sbjct: 588 TECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSF 647
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------- 163
LK ++LSHS++LIK PDF+ AP L + LEGCT L KVHPS+ KLIF+
Sbjct: 648 QKLKFIELSHSQHLIKAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKN 707
Query: 164 ----------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
ESL+IL LSGC KL+K P V G+M+ L EL L GT IK LPLSIE+L GL
Sbjct: 708 LKSFLSSIHLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGL 767
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
L +CK+L SLP I + L+ L LS C +LKK P+I ME L EL LD T + E
Sbjct: 768 ALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRE 827
Query: 274 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 333
+PSSIE L GL LL L +CK A +P SI L SL+TL LSGC +L+ +PD +G ++ L
Sbjct: 828 LPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLL 887
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
+L + + ++ PSS+ L+ L+ LS +GC G S + +L +L ++S L L
Sbjct: 888 KLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSR---NLALSL--RASPTDGLRLS 942
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
SL+ L SL KL+LSD L EGA+PSD+ +L L L LS+NNF+T+P S++ L +L+ L
Sbjct: 943 SLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLI 1002
Query: 454 MEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIECIDSLKLLRNN 510
+E CK LQ LP+LP +I + N C+SL T A L K E + +L+ N
Sbjct: 1003 VEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNE 1062
Query: 511 G----WAILMLREYLEAVSDPL-----------KDFSTVIPGSKIPKWFMYQNEGSSITV 555
AIL + ++ + + V+PGS+IP+WF +Q+EG SITV
Sbjct: 1063 QSDTVEAILQEIRLVASIQKSMAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITV 1122
Query: 556 TRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSH 615
P YN N I G A C VFH P+ S R + + GF +
Sbjct: 1123 ELPPGCYNTNSI-GLAACAVFH-PKFSMGKIGRSAYFSVN-----ESGGFSLDNTTSMHF 1175
Query: 616 SGSDHLWLLF--LSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPV 673
S +DH+W + +S + D H K++F ++ G VK+CG V
Sbjct: 1176 SKADHIWFGYRLISGVDLRD--------HLKVAFATSKV--------PGEVVKKCGVRLV 1219
Query: 674 YMHE 677
Y +
Sbjct: 1220 YEQD 1223
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 261/630 (41%), Positives = 358/630 (56%), Gaps = 75/630 (11%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ------------------ 56
G+E VEG+ +D E++ S AF+ M L LLKI NVQ
Sbjct: 518 GTEAVEGIFLD--LSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTH 575
Query: 57 ----------------LLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRI 100
L E ++LSN LR L WH YPLKS PSN +K+VE MC+SR+
Sbjct: 576 DVWTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRL 635
Query: 101 EELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL 160
++LW+G K LK +KLSHS++L KTPDF+ PNL L L+GCT L +VHPS+ KL
Sbjct: 636 KQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKL 695
Query: 161 IF-----------------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
IF +ESL+IL LSGC KL+KFP V G+ME L L L+GT IK L
Sbjct: 696 IFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGL 755
Query: 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
PLSIE+L GL L L +CK+L SLP +I + L+ L LS C++LKK P+I ME L E
Sbjct: 756 PLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLME 815
Query: 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323
L LDG+ I E+PSSI L GL LNL +CK A +P S L SL TL L GC +L+ +P
Sbjct: 816 LFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELP 875
Query: 324 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383
D LG ++ L EL+ + ++ P S+ L+ NL+ LS +GC G S S ++ F+
Sbjct: 876 DDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKG-GDSKSRNMVFSFH---- 930
Query: 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 443
SS L LPS SGL SL L L C L EGA+PSD+G++ SL L LS+N+F+T+PAS+
Sbjct: 931 SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 990
Query: 444 NSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIEC 500
+ L L+ L +E CK LQ LP+LP ++ + + C+SL T GA K +
Sbjct: 991 SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNF 1050
Query: 501 IDSLKLLRNNGWAIL-MLREYLEAVSD------------PLKDFSTVIPGSKIPKWFMYQ 547
+ +L N G I+ + E ++ +S P +++ ++PGS+IP+WF +Q
Sbjct: 1051 TNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQ 1110
Query: 548 NEGSSITVTRPSYLYNMNKIVGYAICCVFH 577
+ G S+ + P + YN K++G A C +
Sbjct: 1111 SVGCSVNIELPPHWYN-TKLMGLAFCAALN 1139
|
Source: Vitis labrusca Species: Vitis labrusca Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 281/724 (38%), Positives = 391/724 (54%), Gaps = 91/724 (12%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQL----------------- 57
G+E VEGM+++ + E+H S F+ M L + + + Q+
Sbjct: 503 GTEAVEGMVLN--LSTLKELHFSVNVFTKMNKLRVXRFYDAQIWGSSWIWRRNDRYKSPY 560
Query: 58 ------LEG-LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
L G ++LSN LR L W YPLKSLPSN +K++E KMC+S++E+LW+G K
Sbjct: 561 TECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSF 620
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------- 163
LK ++LSHS++LIK PDF+ AP L + LEGCT L KVHPS+ KLIF+
Sbjct: 621 QKLKFIELSHSQHLIKXPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKN 680
Query: 164 ----------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
ESL+IL LSGC KL+K P V G+M+ L EL L GT IK LPLSIE+L GL
Sbjct: 681 LKSFLSSIHLESLQILTLSGCSKLKKXPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGL 740
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
L +CK+L SLP + L+ L LS C +LKK P+I ME L EL LD T + E
Sbjct: 741 ALFNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRE 800
Query: 274 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 333
+PSSIE L GL LL L +CK A +P SI L SL+TL LSGC +L+ +PD +G ++ L
Sbjct: 801 LPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLL 860
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
+L + + ++ PSS+ L+ L+ LS +GC G S + +L +L ++S L L
Sbjct: 861 KLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSR---NLALSL--RASPTDGLRLS 915
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
SL+ L SL KL+LSD L EGA+PSD+ +L L L LS+NNF+T+P S++ L +L+ L
Sbjct: 916 SLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLI 975
Query: 454 MEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIECIDSLKLLRNN 510
+E CK LQ LP+LP +I + N C+SL T A L K E + +L+ N
Sbjct: 976 VEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNE 1035
Query: 511 G----WAILMLREYLEAVSDPL-----------KDFSTVIPGSKIPKWFMYQNEGSSITV 555
AIL + ++ + + V+PGS+IP+WF +Q+EG SITV
Sbjct: 1036 QSDTVEAILQEIRLVASIQKSMAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITV 1095
Query: 556 TRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSH 615
P YN N I G A C VFH P+ S R + + GF +
Sbjct: 1096 ELPPGCYNTNSI-GLAACAVFH-PKFSMGKIGRSAYFSVN-----ESGGFSLDNTTSMHF 1148
Query: 616 SGSDHLWLLF--LSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPV 673
S +DH+W + +S + D H K++F ++ G VK+CG V
Sbjct: 1149 SKADHIWFGYRLISGVDLRD--------HLKVAFATSKV--------PGEVVKKCGVRLV 1192
Query: 674 YMHE 677
Y +
Sbjct: 1193 YEQD 1196
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 283/722 (39%), Positives = 399/722 (55%), Gaps = 86/722 (11%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQL----------------- 57
G+E VEGM+++ + E+H S F+ M L +L+ + Q+
Sbjct: 535 GTEAVEGMVLN--LSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPY 592
Query: 58 ------LEG-LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
L G ++LSN LR L W YPLKSLPSN +K++E KMC+S++E+LW+G K
Sbjct: 593 TECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSF 652
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------- 163
LK ++LSHS++LIKTPDF+ AP L + LEGCT L KVHPS+ KLIF+
Sbjct: 653 QKLKFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKN 712
Query: 164 ----------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
ESL+IL LSGC KL+KFP V G M+ EL L GT IK LPLSIE+L GL
Sbjct: 713 LKSFLSSIHLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTAIKGLPLSIEYLNGL 772
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
L L +CK+L SLP I + L+ L LS CS+LKK P+I ME L EL LD T + E
Sbjct: 773 ALLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLRE 832
Query: 274 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 333
+PSSIE L GL LL L +CK A +P S L SL+TL LSGC +L+ +PD +G ++ L
Sbjct: 833 LPSSIEHLNGLVLLKLKNCKRLASLPESFCKLTSLQTLTLSGCSELKKLPDDMGSLQCLL 892
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
+L + + ++ P+S+ L+ L+ LS +GC G S + +L +L ++S L L
Sbjct: 893 KLKANGSGIQEVPTSITLLTKLQVLSLAGCKGGGSKSK---NLALSL--RASPTDGLRLS 947
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
SL+ L SL KL+LSDC L EGA+PSD+ +L L L LS+N+F+T+P S++ L L+ L
Sbjct: 948 SLTVLHSLKKLNLSDCNLLEGALPSDLSSLSWLECLDLSRNSFITVP-SLSRLPRLERLI 1006
Query: 454 MEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIECIDSLKLLRN- 509
+E CK L+ LP+LP ++ + N C+SL T+ A S + E + +L+ N
Sbjct: 1007 LEHCKSLRSLPELPSSVEELLANDCTSLETISNPSSAYAWRNSGHLYSEFCNCFRLVENE 1066
Query: 510 ---NGWAILMLREYLEAV------SDPLKDFS----TVIPGSKIPKWFMYQNEGSSITVT 556
N AIL + ++ SD +D S V+PGS IP+WF +Q+E S+TV
Sbjct: 1067 QSDNVEAILRGIRLVASIPNSVAPSDIQRDLSIVYDAVVPGSSIPEWFTHQSERCSVTVE 1126
Query: 557 RPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHS 616
P + N +++G A+C VFH I + M+ S GF + S
Sbjct: 1127 LPPHWCN-TRLMGLAVCVVFHA-----NIGMGKFGRSAYFSMNESG-GFSLHNTVSMHFS 1179
Query: 617 GSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSG-TGLKVKRCGFHPVYM 675
+DH+W + R + + +H K+SF AGS G VK+CG V+
Sbjct: 1180 KADHIWFGY---RPLFGDVFSSSIDHLKVSF---------AGSNRAGEVVKKCGVRLVFE 1227
Query: 676 HE 677
+
Sbjct: 1228 QD 1229
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 281/735 (38%), Positives = 394/735 (53%), Gaps = 91/735 (12%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ------------------ 56
G+E VEG+ +D E++ S AF+ M L LLKI NVQ
Sbjct: 526 GTEAVEGIFLD--LSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTH 583
Query: 57 ----------------LLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRI 100
L E ++LSN LR L WH YPLKS PSN +K+VE MC+SR+
Sbjct: 584 DVWIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRL 643
Query: 101 EELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL 160
++ W+G K LK +KLSHS++L K PDF+ PNL L L+GCT L +VHPS+ KL
Sbjct: 644 KQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKL 703
Query: 161 IF-----------------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
IF +ESL+IL LSGC KL+KFP V G+ME L L L+GT IK L
Sbjct: 704 IFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGL 763
Query: 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
PLSIE+L GL L L +CK+L SLP +I + L+ L LS C++LKK P+I ME L E
Sbjct: 764 PLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLME 823
Query: 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323
L LDG+ I E+PSSI L GL LNL +CK A +P S L SL+TL L GC +L+++P
Sbjct: 824 LFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLP 883
Query: 324 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383
D LG ++ L EL+ + V+ P S+ L+ NL+ LS +GC G S S ++ F+
Sbjct: 884 DNLGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKG-GESKSRNMIFSFH---- 938
Query: 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 443
SS L LPS SGL SL L L C L EGA+PSD+G++ SL L LS+N+F+T+PAS+
Sbjct: 939 SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 998
Query: 444 NSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLL---GALKLCKSNGIVIEC 500
+ L L+ L +E CK LQ LP+LP ++ + + C+SL T A K +
Sbjct: 999 SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNF 1058
Query: 501 IDSLKLLRNNGWAIL-MLREYLEAVSD-------------PLKDFSTVIPGSKIPKWFMY 546
+ +L N G I+ + E ++ +S P +++ ++PG++IP+WF +
Sbjct: 1059 TNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRH 1118
Query: 547 QNEGSSITVTRPSYLYNMNKIVGYAICCVFHVP-RHSTRIKKRRHSYELQCCMDGS--DR 603
Q+ G S+ + P + YN K++G A C + S+ L C ++ +
Sbjct: 1119 QSVGCSVNIELPQHWYN-TKLMGLAFCAALNFKGAMDGNPGTEPSSFGLVCYLNDCFVET 1177
Query: 604 GFFITF----GGKFSHSGSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGS 659
G + G KF SDH ++S R I N F+ ++ + + GS
Sbjct: 1178 GLHSLYTPPEGSKFIE--SDHTLFEYIS----LARLEICLGNWFRKLSDNVVASFALTGS 1231
Query: 660 GTGLKVKRCGFHPVY 674
+VK+CG VY
Sbjct: 1232 DG--EVKKCGIRLVY 1244
|
Source: Vitis labrusca Species: Vitis labrusca Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493267|ref|XP_002271591.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 282/762 (37%), Positives = 414/762 (54%), Gaps = 103/762 (13%)
Query: 12 KKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI------------NNVQLLE 59
+K G+E ++GM+ + P ++H++ K+F++M NL LLKI N+V+L +
Sbjct: 653 RKMGTEAIKGMLFN-VSIP-KQIHITTKSFAMMKNLRLLKIYSHLKSTSAREDNSVKLSK 710
Query: 60 GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 119
E+ S +LR L W YPL+SLPS+ + +VE M YS +++LW+ L L ++LS
Sbjct: 711 DFEFPSCELRYLYWQGYPLESLPSSFDAEDLVELDMRYSNLKQLWENDMLLEKLNTIRLS 770
Query: 120 HSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHN-----------------KLI 161
S++LI+ PD + APNLE L L+GC+ L +VH S+ + +I
Sbjct: 771 CSQHLIEIPDISISAPNLETLILDGCSSLLEVHTSIGKLSKLILLSLKNCKKLSSFPSII 830
Query: 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221
+E+LKIL LSGC L+KFP + G+ME L EL L T I+ELPLS HL GLV L L C
Sbjct: 831 NMEALKILNLSGCSGLKKFPDIQGNMEHLLELYLASTAIEELPLSFGHLTGLVILDLKRC 890
Query: 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281
KNL SLP +I + L L LSGCSKL+ FP+++ ME+L EL LDGTSI +P SI+ L
Sbjct: 891 KNLKSLPASICKLESLEYLFLSGCSKLENFPEMMEDMENLKELLLDGTSIEGLPLSIDRL 950
Query: 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341
GL LLNL +CKN +P + L SL+TL +SGC L N+P LG ++ L +L TA
Sbjct: 951 KGLVLLNLRNCKNLVSLPKGMCKLTSLETLIVSGCSLLNNLPRNLGSLQRLVQLHAEGTA 1010
Query: 342 VRRPPSSVFLMKNLRTLSFSGCN--GPPSSAS----WHLHLPFNLMGKSSCLVALMLPS- 394
+ +PP S+ L++NL L + G P S S W LH SS + L LPS
Sbjct: 1011 ITQPPDSIVLLRNLEVLVYPGRKILTPTSLGSLFSFWLLH------RNSSNGIGLHLPSG 1064
Query: 395 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEM 454
RS T LDLSDC L EGAIP+DI +L SL +L LSKNNF+++PA I+ L NLK+L +
Sbjct: 1065 FPIFRSFTNLDLSDCKLIEGAIPNDICSLISLKKLALSKNNFLSIPAGISELTNLKDLLI 1124
Query: 455 EDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNG--- 511
C+ L +P+LPP+I + + C++L L G+ + G+ + KL +
Sbjct: 1125 GQCQSLIEIPELPPSIRDIDAHNCTAL--LPGSSSVSTLQGLQFLFYNCSKLFEDQSSDD 1182
Query: 512 -----------------------WAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQN 548
+ +++++ LE ++ FS V PGS+IP+W +Q+
Sbjct: 1183 KRNVLQRFPHNDASSSASVSSLTTSPVVMQKLLENIA-----FSIVFPGSEIPEWIWHQH 1237
Query: 549 EGSSITVTRPSYLYNMNKIVGYAICCVF-HVP-RHSTRIKKRRHSYELQCCMDGSDRGFF 606
GSSI + P+ Y N ++G+++C V H+P R R+ Y G + F
Sbjct: 1238 VGSSIKIELPTDWY--NDLLGFSLCSVLEHLPERIICRLNSDVFDY-------GDLKDFG 1288
Query: 607 ITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESNH------FKLSFNDAREKYDMAGSG 660
F GK ++ G +H+WL + + C R +FE N ++SF +A ++ + S
Sbjct: 1289 HDFHGKGNNVGPEHVWLGY---QPCSQLR-LFEFNDPNDWNLIEISF-EAAHRFSSSASN 1343
Query: 661 TGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHD 702
VK+CG +Y ++E + K YN+ E D
Sbjct: 1344 V---VKKCGVCLIYAEDLEGIHPQNKIQLKSRGYNVVERSSD 1382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 283/740 (38%), Positives = 397/740 (53%), Gaps = 87/740 (11%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQL----------------- 57
G+E VEGM+++ + E+H S F+ M L +L+ + Q+
Sbjct: 530 GTEAVEGMVLN--LSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPY 587
Query: 58 ------LEG-LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
L G ++LSN LR L W YPLKSLPSN +K++E KMC+S++E+LW+G K
Sbjct: 588 TECKFHLSGDFKFLSNHLRSLHWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSF 647
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------- 163
LK ++LSHS++LIKTPDF+ AP L + LEGCT L KVHPS+ KLIF+
Sbjct: 648 QKLKFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKN 707
Query: 164 ----------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
ESL+ + LSGC KL+KFP V G+M+ L EL L GT IK LPLSIE+L GL
Sbjct: 708 LKSFSSSIHLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSIEYLNGL 767
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
L L +CK+L SLP I + L+ L LS CS+LKK P+I ME L +L LD T + E
Sbjct: 768 SLLNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLDDTGLRE 827
Query: 274 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 333
+PSSIE L GL LL L +CK A +P SI L SL+TL LSGC +L+ +PD +G ++ L
Sbjct: 828 LPSSIEHLNGLVLLKLKNCKKLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLV 887
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
+L + T ++ P+S+ L+ L LS +GC G S + L +SS L
Sbjct: 888 KLKANGTGIQEVPTSITLLTKLEVLSLAGCKGGESKSR-----NLALCLRSSPTKGLRPS 942
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
L L SL KL+LS C L EGA+PSD+ +L L L LS+N+F+T+P +++ L LK L
Sbjct: 943 FLPVLYSLRKLNLSGCNLLEGALPSDLSSLSWLECLDLSRNSFITVP-NLSRLPRLKRLI 1001
Query: 454 MEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIECIDSLKLLRN- 509
+E CK L+ LP+LP NI + N C+SL T A S + + + +L+ N
Sbjct: 1002 LEHCKSLRSLPELPSNIEKLLANDCTSLETFSNPSSAYAWRNSRHLNFQFYNCFRLVENE 1061
Query: 510 ---NGWAILMLREYLEAVSD------PLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSY 560
N AIL + ++S+ LK + V+PGS IP+WF Q+ G S+TV P +
Sbjct: 1062 QSDNVEAILRGIRLVASISNFVAPHYELKWYDAVVPGSSIPEWFTDQSLGCSVTVELPPH 1121
Query: 561 LYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDH 620
+ +++G A+C VFH P R + + GF + S +DH
Sbjct: 1122 -WCTTRLMGLAVCFVFH-PNIGMGKFGRSEYFSMN-----ESGGFSLHNTASTHFSKADH 1174
Query: 621 LWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSG-TGLKVKRCGFHPVYMHE-- 677
+W + R Y + +H K+SF AGS G VK+CG V+ +
Sbjct: 1175 IWFGY---RPLYGEVFSPSIDHLKVSF---------AGSNRAGEVVKKCGARLVFEQDEP 1222
Query: 678 ---VEELDQTTKQWTHFTSY 694
EE++ + W Y
Sbjct: 1223 CGREEEMNHVHEDWLEVPFY 1242
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487015|ref|XP_003633506.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 281/763 (36%), Positives = 417/763 (54%), Gaps = 104/763 (13%)
Query: 12 KKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI------------NNVQLLE 59
+K G+E +EG++++ + +H++ +AF +M NL LLKI N V+L +
Sbjct: 734 RKMGTEAIEGILLN--LSRLTRIHITTEAFVMMKNLRLLKIYWDLESAFMREDNKVKLSK 791
Query: 60 GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 119
E+ S +LR L WH YPL+SLP + +VE MCYS ++ LW+G L L +++S
Sbjct: 792 DFEFPSYELRYLHWHGYPLESLPLGFYAEDLVELDMCYSSLKRLWEGDLLLEKLNTIRVS 851
Query: 120 HSENLIKTPDF-TEAPNLEELYLEGCTKLRKVHPS-----------------LLLHNKLI 161
S++LI+ PD APNLE+L L+GC+ L +VHPS L+ +I
Sbjct: 852 CSQHLIEIPDIIVSAPNLEKLILDGCSSLLEVHPSIGKLNKLILLNLKNCKKLICFPSII 911
Query: 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221
+++L+IL S C L+KFP++ G+ME L EL L T I+ELP SI HL GLV L L C
Sbjct: 912 DMKALEILNFSSCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHLTGLVLLDLKWC 971
Query: 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281
KNL SLP +I + L NL LSGCSKL+ FP++ M++L EL LDGT I +P SIE L
Sbjct: 972 KNLKSLPTSICKLKSLENLSLSGCSKLESFPEVTENMDNLKELLLDGTPIEVLPLSIERL 1031
Query: 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341
GL LLNL CKN + + + L SL+TL +SGC +L N+P LG ++ L +L TA
Sbjct: 1032 KGLILLNLRKCKNLVSLSNGMCNLTSLETLIVSGCSQLNNLPRNLGSLQRLAQLHADGTA 1091
Query: 342 VRRPPSSVFLMKNLRTLSFSGCN--GPPSSAS----WHLHLPFNLMGKSSCLVALMLP-S 394
+ +PP S+ L++NL+ L + GC P S S W LH G SS + L LP S
Sbjct: 1092 IAQPPDSIVLLRNLQVLIYPGCKILAPNSLGSLFSFWLLH------GNSSNGIGLRLPSS 1145
Query: 395 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEM 454
S RSL+ LD+SDC L EGAIP+ I +L SL +L LS+NNF+++PA I+ L NLK+L +
Sbjct: 1146 FSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTNLKDLRL 1205
Query: 455 EDCKRLQFLPQLPPNIIFVKVNGCSSLV-------TLLGALKLCKSNGIVIE-------- 499
C+ L +P+LPP++ + + C++L+ TL G L + +E
Sbjct: 1206 GQCQSLTGIPELPPSVRDIDAHNCTALLPGSSSVSTLQGLQFLFYNCSKPVEDQSSDDKR 1265
Query: 500 ---------CIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEG 550
+ S + + +M+++ LE ++ FS V PG+ IP W +QN G
Sbjct: 1266 TELQIFPHIYVSSTASESSVTTSPVMMQKLLENIA-----FSIVFPGTGIPDWIWHQNVG 1320
Query: 551 SSITVTRPSYLYNMNKIVGYAICCVF-HVPRHSTRIKKRRHSYELQCCMDGSDRGFFITF 609
SSI + P+ Y+ + +G+A+C V H+P RI +S D D G F
Sbjct: 1321 SSIKIQLPTDWYS-DDFLGFALCSVLEHLPE---RIICHLNS-------DVFDYGDLKDF 1369
Query: 610 GGKFSHS----GSDHLWLLFLSPRECYDRRWIF------ESNHFKLSFNDAREKYDMAGS 659
G F + GS+H+WL + + C R +F E NH ++SF +A +++ + S
Sbjct: 1370 GHDFHWTGNIVGSEHVWLGY---QPCSQLR-LFQFNDPNEWNHIEISF-EAAHRFNSSAS 1424
Query: 660 GTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHD 702
VK+CG +Y ++E + ++ + N+ E D
Sbjct: 1425 NV---VKKCGVCLIYAEDLEGIRPQNRKQLKSSGCNVVERSSD 1464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 271/705 (38%), Positives = 368/705 (52%), Gaps = 107/705 (15%)
Query: 12 KKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--------------- 56
+K G+E +EG+ ++ + + E+H + +AF+ M L LLK+ N
Sbjct: 536 EKTGTENIEGIFLN--LYGLKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRNENYK 593
Query: 57 --LLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLK 114
+ E+ SNKLR L WHRYPLKSLPSN +VE +C +EELWKG+KH+ L+
Sbjct: 594 RPFSQDFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLE 653
Query: 115 VMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGC 174
+ LSHS+ L++TPDF+ PNLE LI GC
Sbjct: 654 CIDLSHSQYLVRTPDFSGIPNLER------------------------------LIFEGC 683
Query: 175 LKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSF 234
TD++E+ S+ L L+ L L DCKNL P +I
Sbjct: 684 -----------------------TDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSIE-L 719
Query: 235 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294
+ L+ L LSGCSKL FP+I+ ME L EL LDGT+I E+P S+E L GL LLNL +C+
Sbjct: 720 ESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCER 779
Query: 295 FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354
+PSSI LKSL TL LSGC +LE +P+ LG +E L EL +AV +PPSS+ L++N
Sbjct: 780 LITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRN 839
Query: 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG 414
L+ LSF GCNG PSS + + S LPSLSGL SL +L+LSDC + EG
Sbjct: 840 LKVLSFQGCNGSPSSRWNSRFWSMLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEG 899
Query: 415 AIPSDIGN-LHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFV 473
A+P+D+G L SL L L N+FVTLP I+ L NLK L + CKRLQ LP LPPNI +
Sbjct: 900 ALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRI 959
Query: 474 KVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFST 533
C+SL TL +G+ C + W YL VS + F+T
Sbjct: 960 NAQNCTSLETL---------SGLSAPCWLAFTNSFRQNWG---QETYLAEVSR-IPKFNT 1006
Query: 534 VIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYE 593
+PG+ IP+WF Q G SI V PS+ YN N +G+A+C VF + + + + E
Sbjct: 1007 YLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDN-FLGFAMCIVFAL-KEPNQCSRGAMLCE 1064
Query: 594 LQCC-MDGSDRGFF---ITFGGKFSHSG---SDHLWLLFLS--PRECYDRRWIFESNHFK 644
L+ +D S+ G F I + G G SDHLWL + P + D W + +H K
Sbjct: 1065 LESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDHLWLGYHPNFPIKKDDMDWPNKLSHIK 1124
Query: 645 LSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWT 689
SF A G +VK CGF VYM ++ + + +++
Sbjct: 1125 ASFVIA---------GIPHEVKWCGFRLVYMEDLNDDNSKITKYS 1160
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.583 | 0.208 | 0.333 | 1.1e-50 | |
| TAIR|locus:2827629 | 1355 | AT2G17050 [Arabidopsis thalian | 0.459 | 0.240 | 0.363 | 5.4e-46 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.846 | 0.463 | 0.277 | 3.6e-45 | |
| TAIR|locus:2147992 | 1189 | AT5G11250 [Arabidopsis thalian | 0.640 | 0.381 | 0.306 | 2.2e-42 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.636 | 0.371 | 0.310 | 1.1e-39 | |
| TAIR|locus:2130270 | 1449 | RPP5 "RECOGNITION OF PERONOSPO | 0.679 | 0.332 | 0.306 | 2.7e-38 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.485 | 0.282 | 0.328 | 7.2e-37 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.519 | 0.310 | 0.314 | 1.5e-36 | |
| TAIR|locus:2153363 | 1261 | AT5G45200 [Arabidopsis thalian | 0.418 | 0.235 | 0.342 | 1.7e-36 | |
| TAIR|locus:2129236 | 1301 | SNC1 "SUPPRESSOR OF NPR1-1, CO | 0.641 | 0.349 | 0.295 | 2.6e-36 |
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 144/432 (33%), Positives = 221/432 (51%)
Query: 53 NNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNM 112
+ V L+ L Y ++RLL W + LPS + +VE M S LW+G K L
Sbjct: 606 DTVNALQDLNYQFQEIRLLHWINFRRLCLPSTFNPEFLVELNMPSSTCHTLWEGSKALRN 665
Query: 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILS 172
LK M LS+S +L + PD + A NLEEL L+ C L KV PS + KL L++L L
Sbjct: 666 LKWMDLSYSISLKELPDLSTATNLEELILKYCVSLVKV-PSCV--GKL---GKLQVLCLH 719
Query: 173 GCLKLRKFPHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231
GC + + P ++ LQ L L + + + ELP SI + L L L C L LP++I
Sbjct: 720 GCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDLG-CLRLLKLPLSI 778
Query: 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG-TSITEVPSSIXXXXXXXXXXXX 290
F L+ L+GCS L + P + +L L+L +S+ E+PSSI
Sbjct: 779 VKFTNLKKFILNGCSSLVELP-FMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLS 837
Query: 291 DCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE-TAVRRPPSSV 349
+C + ++PS I +L+ L+L C L +P ++G V +L LD+S +++ PSSV
Sbjct: 838 NCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSV 897
Query: 350 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNL--MGKSSCLVALMLPSLSG-LRSLTKLDL 406
+ L+ L+ C+ S H NL + S C + LPS G + +L +L+L
Sbjct: 898 GNISELQVLNLHNCSNLVKLPSSFGHAT-NLWRLDLSGCSSLVELPSSIGNITNLQELNL 956
Query: 407 SDCGLGEGAIPSDIGNLHSLNELYLSK-NNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465
+C +PS IGNLH L L L++ LP++IN L +L+ L++ DC + + P+
Sbjct: 957 CNCS-NLVKLPSSIGNLHLLFTLSLARCQKLEALPSNIN-LKSLERLDLTDCSQFKSFPE 1014
Query: 466 LPPNIIFVKVNG 477
+ NI + ++G
Sbjct: 1015 ISTNIECLYLDG 1026
|
|
| TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 5.4e-46, P = 5.4e-46
Identities = 128/352 (36%), Positives = 198/352 (56%)
Query: 24 IDDYFFPVNEVHLSAK--AFSLMTNLGLLKI--NN------VQLLEGLEYLSNKLRLLDW 73
I+ F ++ + K AF M NL LKI +N ++ E L+ L N+LRLL W
Sbjct: 362 IEVIFLDMSNLKFFVKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPNELRLLHW 421
Query: 74 HRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEA 133
YPL+SLP + +VE M YS++++LW G K+L MLK+++LSHS++L++ + ++
Sbjct: 422 EDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLVEIEELIKS 481
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR--KFPHVVGSMECLQ 191
N+E + L+GCTK++ P+ H ++ L+++ LSGC++++ + G L+
Sbjct: 482 KNIEVIDLQGCTKIQSF-PATR-H-----LQHLRVINLSGCVEIKSTQLEEFQGFPRNLK 534
Query: 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKF 251
EL L GT I+E+ SI HL L L L++CK L +LP+ + L L LSGCSKL+
Sbjct: 535 ELYLSGTGIREVTSSI-HLSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNI 593
Query: 252 PQIVTTMEDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSLKTL 311
+ T +L EL L GTSI EVPSSI +CK +P + L SL L
Sbjct: 594 QDLPT---NLKELYLAGTSIREVPSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTML 650
Query: 312 NLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363
LSGC +L ++PD +L L+++ET +++ PSS + L +L + C
Sbjct: 651 ILSGCSELRSIPDL---PRNLRHLNLAETPIKKLPSSFEDLTKLVSLDLNHC 699
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 3.6e-45, P = 3.6e-45
Identities = 182/655 (27%), Positives = 306/655 (46%)
Query: 44 MTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYP-LKSLPSNLQLDKIVEFKMCYSR-IE 101
+ L + N +L +G++ L N L+ +D R L +P + + E + Y + +
Sbjct: 604 LVELCMSNSNLEKLWDGIQPLRN-LKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLV 662
Query: 102 ELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI 161
E+ IK+L L L++ L P +LE + + GC+ L K P + + + +
Sbjct: 663 EVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSL-KHFPEISWNTRRL 721
Query: 162 FVESLKILILSGCLKLRKFPHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLND 220
++ S KI + P + + CL +L + D ++ LP + HL L L L+
Sbjct: 722 YLSSTKI---------EELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDG 772
Query: 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIXX 280
C+ L +LP + + L L++SGC + +FP++ T++E L + TSI E+P+ I
Sbjct: 773 CRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIE---VLRISETSIEEIPARICN 829
Query: 281 XXXXXXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES-LEELDISE 339
+ K A +P SI+ L+SL+ L LSGC LE+ P + Q S L D+
Sbjct: 830 LSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDLDR 889
Query: 340 TAVRRPPSSVFLMKNLRTLSFSGC--NGPPSSASWHLHLPFNLMGKS----SCLVALMLP 393
T+++ P ++ + L L S P S + L +G S L+ + P
Sbjct: 890 TSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCP 949
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
LS L L LS+ + E IP+ IGNL +L EL LS NNF +PASI L L L
Sbjct: 950 PLSRFDDLRALSLSNMNMTE--IPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLN 1007
Query: 454 MEDCKRLQFLP-QLPPNIIFVKVNGCSSLVTLLGAL-KLCKSNGIVIECIDSLKLLRNNG 511
+ +C+RLQ LP +LP ++++ ++ C+SLV++ G + C + C KL +
Sbjct: 1008 LNNCQRLQALPDELPRGLLYIYIHSCTSLVSISGCFNQYCLRKLVASNCY---KL---DQ 1061
Query: 512 WAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYA 571
A +++ L+ S K + PGS IP F +Q G S+ + P + + I+G++
Sbjct: 1062 AAQILIHRNLKLES--AKPEHSYFPGSDIPTCFNHQVMGPSLNIQLPQS-ESSSDILGFS 1118
Query: 572 ICCVFHV----PRHSTRIKKRRHSYELQCC-MDGSDRGFFITFGGKFSHS--GSDHLWLL 624
C + V P ++ +I + C + D ++ F++ GSDHL LL
Sbjct: 1119 ACIMIGVDGQYPMNNLKIHCSCILKDADACELVVMDEVWYPD-PKAFTNMYFGSDHL-LL 1176
Query: 625 FLSPRECYDRRWIFESNHFKLSF-NDAREKYDMAGSGTGLKVKRCGFHPVYMHEV 678
F R C E+ F+ S N + + G +VK+C H + + ++
Sbjct: 1177 F--SRTCTSMEAYSEAL-FEFSVENTEGDSFSPLG-----EVKKCAVHLISLKDM 1223
|
|
| TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 146/477 (30%), Positives = 242/477 (50%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKIN----NVQLLEGLEYLSNKLRL 70
GS+ V G ID ++ E ++ + F M+NL L+ + +QL GL YLS KL+L
Sbjct: 578 GSKSVIG--IDFHYIIEEEFDMNERVFEGMSNLQFLRFDCDHDTLQLSRGLSYLSRKLQL 635
Query: 71 LDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF 130
LDW +P+ LPS + ++ ++E + +S+++ LW+G+K L+ L+ M LS+S NL + PD
Sbjct: 636 LDWIYFPMTCLPSTVNVEFLIELNLTHSKLDMLWEGVKPLHNLRQMDLSYSVNLKELPDL 695
Query: 131 TEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 190
+ A NL +L L C+ L K+ PS + N + +L+ L L+GC L + P G L
Sbjct: 696 STAINLRKLILSNCSSLIKL-PSCI-GNAI----NLEDLDLNGCSSLVELPSF-GDAINL 748
Query: 191 QELLLDG-TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249
Q+LLL +++ ELP SI + L +L L C +L LP +I + L L L+GCS L
Sbjct: 749 QKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLL 808
Query: 250 KFPQIVTTMEDLSELNLDGTS-ITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSL 308
+ P + +L +L+L + + E+PSSI DC + +PSSI +L
Sbjct: 809 ELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNL 868
Query: 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPP 367
+NLS C L +P ++G ++ L+EL + + + P ++ L ++L L + C
Sbjct: 869 VYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININL-ESLDILVLNDC---- 923
Query: 368 SSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 427
S + N+ C A+ LS +RS +LD + + L +
Sbjct: 924 SMLKRFPEISTNVRALYLCGTAIEEVPLS-IRSWPRLDELLMSYFDNLVEFP-HVLDIIT 981
Query: 428 ELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
L LS +P I + L+ L ++ +++ LPQ+P ++ ++ C SL L
Sbjct: 982 NLDLSGKEIQEVPPLIKRISRLQTLILKGYRKVVSLPQIPDSLKWIDAEDCESLERL 1038
|
|
| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 152/490 (31%), Positives = 234/490 (47%)
Query: 35 HLSAKAFSLMTNLGLLKINN--------VQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQ 86
++S KAF M+NL L++ N V L L Y+S KLRLLDW +P+ PS
Sbjct: 590 NISEKAFEGMSNLQFLRVKNFGNLFPAIVCLPHCLTYISRKLRLLDWMYFPMTCFPSKFN 649
Query: 87 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 146
+ +VE M S++E+LW+ I+ L LK M L S+NL + PD + A NLE L L GC+
Sbjct: 650 PEFLVELNMWGSKLEKLWEEIQPLRNLKRMDLFSSKNLKELPDLSSATNLEVLNLNGCSS 709
Query: 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD-IKELPL 205
L ++ S+ KL+ +E LSGC L + P +G+ LQ + + + ELP
Sbjct: 710 LVELPFSIGNATKLLKLE------LSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPS 763
Query: 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265
SI + L +L L+ C +L LP +I + L+ L L CS LK+ P + +L EL+
Sbjct: 764 SIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLKELH 823
Query: 266 LDG-TSITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324
L +S+ ++PSSI C++ +PS I +LK LNL L +P
Sbjct: 824 LTCCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNLGYLSCLVELPS 883
Query: 325 TLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGC----NGPPSSASW-HLHLPF 378
+G + L EL + ++ P+++ L + L L + C P S + LHL
Sbjct: 884 FIGNLHKLSELRLRGCKKLQVLPTNINL-EFLNELDLTDCILLKTFPVISTNIKRLHLRG 942
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 438
+ + + P L L+ L +LS+ S + L + L LS N
Sbjct: 943 TQIEEVPSSLRSW-PRLEDLQMLYSENLSEF--------SHV--LERITVLELSDINIRE 991
Query: 439 LPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVI 498
+ +N + L+ L++ C +L LPQL ++I + C SL L G C N I
Sbjct: 992 MTPWLNRITRLRRLKLSGCGKLVSLPQLSDSLIILDAENCGSLERL-G----CSFNNPNI 1046
Query: 499 ECIDSLKLLR 508
+C+D L+
Sbjct: 1047 KCLDFTNCLK 1056
|
|
| TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 2.7e-38, Sum P(3) = 2.7e-38
Identities = 162/528 (30%), Positives = 251/528 (47%)
Query: 10 VEKKYGSELVEGMIID-DYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ---LLEGLEYLS 65
V +K G+E + G+ + + +F + + ++F M NL LKI + + L YL
Sbjct: 514 VTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLKIGDWSDGGQPQSLVYLP 573
Query: 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 125
KLRLLDW PLKSLPS + + +V M YS++E+LW+G L LK M L S+NL
Sbjct: 574 LKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMNLLCSKNLK 633
Query: 126 KTPDFTEAPNLEELYLEGCT-------------KLRKVHPSLLLHNKLIFVESL-KILIL 171
+ PD + A NLEEL LEGC KLRK+H S ++ L +E + + L
Sbjct: 634 EIPDLSNARNLEELDLEGCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYL 693
Query: 172 S-GCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVA 230
S C ++ +V L+ LL + +K L + + + LV+L + + +L L
Sbjct: 694 SVDCSRVEGTQGIVYFPSKLRLLLWNNCPLKRLHSNFKVEY-LVKLRMEN-SDLEKLWDG 751
Query: 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL-DGTSITEVPSSIXXXXXXXXXXX 289
L+ + L G LK+ P + + +L E+++ S+ PSS+
Sbjct: 752 TQPLGRLKQMFLRGSKYLKEIPDLSLAI-NLEEVDICKCESLVTFPSSMQNAIKLIYLDI 810
Query: 290 XDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISETAVRRPPSS 348
DCK P+ +N L+SL+ LNL+GC L N P +G ++D E
Sbjct: 811 SDCKKLESFPTDLN-LESLEYLNLTGCPNLRNFPAIKMG----CSDVDFPEGRNEIVVED 865
Query: 349 VFLMKNLRT-LSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML-PSLSGLRSLTKLDL 406
F KNL L + C + + + C L + L SL ++DL
Sbjct: 866 CFWNKNLPAGLDYLDCLMRCMPCEFRPE--YLVFLNVRCYKHEKLWEGIQSLGSLEEMDL 923
Query: 407 SDC-GLGEGAIPSDIGNLHSLNELYLSK-NNFVTLPASINSLLNLKELEMEDCKRLQFLP 464
S+ L E IP D+ +L LYL+ + VTLP++I +L L LEM++C L+ LP
Sbjct: 924 SESENLTE--IP-DLSKATNLKHLYLNNCKSLVTLPSTIGNLQKLVRLEMKECTGLEVLP 980
Query: 465 QLPPNIIFVK---VNGCSSLVT--LLG-ALK-LCKSNGIVIECIDSLK 505
N+ ++ ++GCSSL T L+ ++K L N + E +D K
Sbjct: 981 T-DVNLSSLETLDLSGCSSLRTFPLISKSIKWLYLENTAIEEILDLSK 1027
|
|
| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 7.2e-37, P = 7.2e-37
Identities = 125/380 (32%), Positives = 187/380 (49%)
Query: 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINN------------VQLLEGLE 62
G++ + G+ +D + + LSAKAF M NL LKI + + L GL
Sbjct: 537 GTDKIRGIFLDTS--KLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLS 594
Query: 63 YLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE 122
+L N+L L WH YPL+S+P + +V+ K+ +S++EE+W K + MLK + LSHS
Sbjct: 595 FLPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSI 654
Query: 123 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV---ESLKILILSGCLKLRK 179
NL + A NLE L LEGCT L+K+ ++ KLI++ + + L +K +
Sbjct: 655 NLRQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQS 714
Query: 180 FPHVVGS-----------MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228
++ S E ++ LLLDGT IK LP SI+ L L L +CK L L
Sbjct: 715 LQTLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLS 774
Query: 229 VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIXXXXXXXXXX 288
+ +CL+ L LSGCS+L+ FP+I ME L L +D TSITE+P +
Sbjct: 775 SDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMMHLSNIKTFSL 834
Query: 289 XXDCKNFARVPSSINGLK-SLKTLNLSGC----CKLENVPDTLGQVESLEELDISETAVR 343
C + V S+ + +L L+ C L +PD +G + SL+ L +S +
Sbjct: 835 ---CGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIE 891
Query: 344 RPPSSVFLMKNLRTLSFSGC 363
P S + NL+ C
Sbjct: 892 NLPESFNQLNNLKWFDLKFC 911
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 123/391 (31%), Positives = 205/391 (52%)
Query: 34 VHLSAKAFSLMTNLGLLKINN---------VQLLEGLEYLSNKLRLLDWHRYPLKSLPSN 84
+++S +AF M NL L+ ++ + L +GL ++S KLRLL W RYPL LP
Sbjct: 571 INISERAFERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRLLHWERYPLTCLPPK 630
Query: 85 LQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144
+ +V+ M S +E+LW G + + LK M LS NL + PDF+ A NL+EL L C
Sbjct: 631 FNPEFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINC 690
Query: 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG-TDIKEL 203
L ++ PS + N +E L L C L K P +G++ L++L L+ + + +L
Sbjct: 691 LSLVEL-PSSI-GNATNLLE----LDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKL 744
Query: 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
P S ++ L +L L+ C +L +P +I + L+ + GCS L + P + +L E
Sbjct: 745 PSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKE 804
Query: 264 LNL-DGTSITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 322
L+L + +S+ E PSS+ C + ++PS I + +L++L LS C L +
Sbjct: 805 LHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPS-IGNVINLQSLYLSDCSSLMEL 863
Query: 323 PDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGP---PSSASWHLHLPF 378
P T+ +L+ L + + + PSS++ + NL++L +GC+ PS ++L
Sbjct: 864 PFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQS 923
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409
+ K S LV L S+ + +L+ LD+S+C
Sbjct: 924 LSLMKCSSLVELP-SSIWRISNLSYLDVSNC 953
|
|
| TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 111/324 (34%), Positives = 174/324 (53%)
Query: 59 EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 118
EGLE+L +LR L+W +YP K+LP N +++ K+ YS+IE++W+ K + L+ + L
Sbjct: 610 EGLEFLPQELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWLDL 669
Query: 119 SHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH-NKLIFV--------ESL--- 166
+HS L + A L+ + LEGCT L+ + P +L + L+F+ ESL
Sbjct: 670 NHSSKLHSLSGLSRAQKLQSINLEGCTGLKTL-PQVLQNMESLMFLNLRGCTSLESLPDI 728
Query: 167 -----KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221
+ LILS C + ++F + ++E EL LDGT IKELP +I L L+ L L DC
Sbjct: 729 TLVGLRTLILSNCSRFKEFKLIAKNLE---ELYLDGTAIKELPSTIGDLQKLISLKLKDC 785
Query: 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIXXX 281
KNL SLP +I + + ++ + LSGCS L+ FP++ ++ L L LDGT+I ++P +
Sbjct: 786 KNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKIPDILHHL 845
Query: 282 X--XXXXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339
+C + P I GL S++ L+LS + +P ++G + L LD+
Sbjct: 846 SPDQGLTSSQSNC-HLCEWPRGIYGLSSVRRLSLSSN-EFRILPRSIGYLYHLNWLDLKH 903
Query: 340 TAVRRPPSSVFLMKNLRTLSFSGC 363
+ S L NL+ L GC
Sbjct: 904 C--KNLVSVPMLPPNLQWLDAHGC 925
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| TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 149/504 (29%), Positives = 236/504 (46%)
Query: 10 VEKKYGSELVEGMIID-DYFFPVNEVHLSAKAFSLMTNLGLLKINNV-QLLEGLEYLSNK 67
V +K G+E + G+ + + +F + + ++F M NL L+I L + L YL K
Sbjct: 510 VTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEIGYYGDLPQSLVYLPLK 569
Query: 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT 127
LRLLDW PLKSLPS + + +V M YS++E+LW+G L LK M L +S NL +
Sbjct: 570 LRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEI 629
Query: 128 PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 187
PD + A NLEEL L GC L + S+ KLI+++ +S C KL FP + ++
Sbjct: 630 PDLSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLD------MSDCKKLESFPTDL-NL 682
Query: 188 ECLQELLLDGT-DIKELPL------SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN- 239
E L+ L L G +++ P ++ G ++ + DC +LP + CL
Sbjct: 683 ESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTRC 742
Query: 240 ------------LKLSGCSKLKKFPQIVTTMEDLSELNL-DGTSITEVPSSIXXXXXXXX 286
L + G K +K + + ++ L ++L + ++TE+P +
Sbjct: 743 MPCEFRPEQLAFLNVRGY-KHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLES 800
Query: 287 XXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 346
+CK+ +PS+I L L L + C LE +P + + SLE LD+S + R
Sbjct: 801 LILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVN-LSSLETLDLSGCSSLR-- 857
Query: 347 SSVFLMKNLRTLSF--SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 404
S + N+ L + PS+ +LH L K C +LP+ L SL L
Sbjct: 858 SFPLISTNIVWLYLENTAIEEIPSTIG-NLHRLVRLEMKK-CTGLEVLPTDVNLSSLETL 915
Query: 405 DLSDCG-LGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463
DLS C L + S+ S+ LYL +P ++ NLK L++ +CK L L
Sbjct: 916 DLSGCSSLRSFPLISE-----SIKWLYLENTAIEEIP-DLSKATNLKNLKLNNCKSLVTL 969
Query: 464 PQLPPNI---IFVKVNGCSSLVTL 484
P N+ + ++ C+ L L
Sbjct: 970 PTTIGNLQKLVSFEMKECTGLEVL 993
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.01250006 | tir-nbs-lrr resistance protein (1203 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 709 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-47 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-24 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 9e-19 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-11 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-09 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.003 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.004 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 2e-47
Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 87/443 (19%)
Query: 1 MEARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI-------- 52
++A+ +E G++ V G+ +D ++E+H+ AF M NL LK
Sbjct: 516 VDAKDICDVLEDNTGTKKVLGITLD--IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573
Query: 53 NNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
V+ L EG +YL KLRLL W +YPL+ +PSN + + +V+ +M S++E+LW G+ L
Sbjct: 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL---------- 160
L+ + L S+NL + PD + A NLE L L C+ L ++ S+ NKL
Sbjct: 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693
Query: 161 -------IFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
I ++SL L LSGC +L+ FP + + + L LD T I+E P ++ L L
Sbjct: 694 LEILPTGINLKSLYRLNLSGCSRLKSFPDISTN---ISWLDLDETAIEEFPSNL-RLENL 749
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT---TM--EDLSELNL-D 267
+L L + K+ KL + Q +T TM L+ L L D
Sbjct: 750 DELILCEMKS----------------------EKLWERVQPLTPLMTMLSPSLTRLFLSD 787
Query: 268 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLG 327
S+ E+PSSI+ L LE L + +C N +P+ IN L+SL++L+LSGC +L PD
Sbjct: 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDI-- 844
Query: 328 QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL 387
++ +L++S T + P + NL L +GCN NL S
Sbjct: 845 -STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN--------------NLQRVS--- 886
Query: 388 VALMLPSLSGLRSLTKLDLSDCG 410
++S L+ L +D SDCG
Sbjct: 887 -----LNISKLKHLETVDFSDCG 904
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 100/291 (34%), Positives = 145/291 (49%), Gaps = 29/291 (9%)
Query: 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249
L+ L D ++ +P S LV+L + K L L + S LRN+ L G LK
Sbjct: 591 LRLLRWDKYPLRCMP-SNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLK 648
Query: 250 KFPQIVTTMEDLSELNL-DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308
+ P + + +L L L D +S+ E+PSSI+ L LE L+++ C+N +P+ IN LKSL
Sbjct: 649 EIPDL-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSL 706
Query: 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPS 368
LNLSGC +L++ PD ++ LD+ ETA+ PS++ L +NL L C
Sbjct: 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRL-ENLDELIL--CEMKSE 760
Query: 369 SASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC-GLGEGAIPSDIGNLHSLN 427
+ LM ML SLT+L LSD L E +PS I NLH L
Sbjct: 761 KLWERVQPLTPLMT--------MLSP-----SLTRLFLSDIPSLVE--LPSSIQNLHKLE 805
Query: 428 ELYLSK-NNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 477
L + N TLP IN L +L+ L++ C RL+ P + NI + ++
Sbjct: 806 HLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLNLSR 855
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 9e-19
Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 39/266 (14%)
Query: 44 MTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEEL 103
+ +L L ++ L+ +S + LD ++ PSNL+L+ + E +C + E+L
Sbjct: 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762
Query: 104 WKGIKHLNMLKVMKLSHSEN---LIKTPDFTEAP-------NLEELYLEGCTKLRKVHPS 153
W+ ++ L L M LS S L P E P LE L +E C L +
Sbjct: 763 WERVQPLTPLMTM-LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821
Query: 154 LLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
+ L SL+ L LSGC +LR FP + ++ +L L T I+E+P IE L
Sbjct: 822 INLE-------SLESLDLSGCSRLRTFPDISTNIS---DLNLSRTGIEEVPWWIEKFSNL 871
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
L +N C NL + + IS + L + S C L+E + +G+ +E
Sbjct: 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDC-------------GALTEASWNGSP-SE 917
Query: 274 VPSSIE----LLPGLELLNLNDCKNF 295
V + + LP +N +C N
Sbjct: 918 VAMATDNIHSKLPSTVCINFINCFNL 943
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 7e-11
Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 29/255 (11%)
Query: 199 DIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTM 258
+ ++ +L L L LN L S + L +L L + P I
Sbjct: 81 SSLDGSENLLNLLPLPSLDLNL-NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLK 139
Query: 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
+L EL+L I +PS + LP L+ L+L+ + +P ++ L +L L+LSG K
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSG-NK 197
Query: 319 LENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPF 378
+ ++P + + +LEELD+S ++ SS+ +KNL L L
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE----------------LSN 241
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 438
N + + L +L LDLS+ + S +G+L +L EL LS N+
Sbjct: 242 NKLEDLPESI-------GNLSNLETLDLSNNQISS---ISSLGSLTNLRELDLSGNSLSN 291
Query: 439 LPASINSLLNLKELE 453
I LL L EL
Sbjct: 292 ALPLIALLLLLLELL 306
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 32/241 (13%)
Query: 222 KNLS-SLPVAISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDGTSIT-EVPSSI 278
KN+S + AI ++ + LS P I TT L LNL + T +P
Sbjct: 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG- 137
Query: 279 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI- 337
+P LE L+L++ +P+ I SLK L+L G + +P++L + SLE L +
Sbjct: 138 -SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196
Query: 338 SETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLS 396
S V + P + MK+L+ + + G N NL G+ +P +
Sbjct: 197 SNQLVGQIPRELGQMKSLKWI-YLGYN--------------NLSGE--------IPYEIG 233
Query: 397 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEME 455
GL SL LDL L G IPS +GNL +L L+L +N +P SI SL L L++
Sbjct: 234 GLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292
Query: 456 D 456
D
Sbjct: 293 D 293
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 58/258 (22%)
Query: 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
+ + L L L++ +P I SF L+ L L G + K
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK------------- 179
Query: 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL-----NLSGCCK 318
+P+S+ L LE L L + ++P + +KSLK + NLSG
Sbjct: 180 ----------IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--- 226
Query: 319 LENVPDTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLP 377
+P +G + SL LD+ + P PSS+ +KNL+ L
Sbjct: 227 --EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL------------------- 265
Query: 378 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437
F K L + PS+ L+ L LDLSD L G IP + L +L L+L NNF
Sbjct: 266 FLYQNK---LSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFT 321
Query: 438 -TLPASINSLLNLKELEM 454
+P ++ SL L+ L++
Sbjct: 322 GKIPVALTSLPRLQVLQL 339
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 75/306 (24%), Positives = 129/306 (42%), Gaps = 32/306 (10%)
Query: 181 PHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN 239
P+ +G + L L L+ +P S+ +L L L L K +P +I S Q L +
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 240 LKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARV 298
L LS S + P++V +++L L+L + T ++P ++ LP L++L L K +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 299 PSSINGLKSLKTLNLS----------GCCKLEN--------------VPDTLGQVESLEE 334
P ++ +L L+LS G C N +P +LG SL
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408
Query: 335 LDISETAVRRPPSSVFL---MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 391
+ + + + S F + +S + G +S W + ++ +
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGG 467
Query: 392 LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLK 450
LP G + L LDLS GA+P +G+L L +L LS+N +P ++S L
Sbjct: 468 LPDSFGSKRLENLDLSR-NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 451 ELEMED 456
L++
Sbjct: 527 SLDLSH 532
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 88/343 (25%), Positives = 146/343 (42%), Gaps = 60/343 (17%)
Query: 156 LHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQ 215
+ N + SLK+L L G + + K P+ + ++ T ++ L L+ L G +
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL----------TSLEFLTLASNQLVGQIP 205
Query: 216 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EV 274
L K+L + + ++ LSG + P + + L+ L+L ++T +
Sbjct: 206 RELGQMKSLKWIYLGYNN--------LSG-----EIPYEIGGLTSLNHLDLVYNNLTGPI 252
Query: 275 PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 334
PSS+ L L+ L L K +P SI L+ L +L+LS +P+ + Q+++LE
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312
Query: 335 LDI-SETAVRRPPSSVFLMKNLRTLS-----FSGCNGPPSSASWHLHLPF------NLMG 382
L + S + P ++ + L+ L FSG P + H +L NL G
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTG 370
Query: 383 K-------SSCLVALML----------PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425
+ S L L+L SL RSL ++ L D G +PS+ L
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF-SGELPSEFTKLPL 429
Query: 426 LNELYLSKNNFVTLPASINSLL-NLKELEMEDCKRLQFLPQLP 467
+ L +S NN L INS ++ L+M R +F LP
Sbjct: 430 VYFLDISNNN---LQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 203 LPLSIEHLFGLVQLTLNDCKNLSSL-----------PVAISSFQCLRNLKLSGCSKLKKF 251
L LS +L G + L NL L P ++ + + LR ++L S +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420
Query: 252 PQIVTTME-----DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 306
P T + D+S NL G + S +P L++L+L K F +P S G K
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQG----RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK 475
Query: 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNG 365
L+ L+LS VP LG + L +L +SE + P + K L +L S
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ- 534
Query: 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425
L + S S + L++LDLS G IP ++GN+ S
Sbjct: 535 ---------------------LSGQIPASFSEMPVLSQLDLS-QNQLSGEIPKNLGNVES 572
Query: 426 LNELYLSKNNF 436
L ++ +S N+
Sbjct: 573 LVQVNISHNHL 583
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 8/247 (3%)
Query: 228 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELL 287
+ S R + L P ++ + L L+ G S + ++ L L L
Sbjct: 39 DSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSL 98
Query: 288 NLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 347
+LN S + L +L +L+L + P +L+ELD+S+ + PS
Sbjct: 99 DLNL-NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS 157
Query: 348 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLM--GKSSCLVALMLPSLSGLRSLTKLD 405
+ + NL+ L S + S L NL S ++ + P + L +L +LD
Sbjct: 158 PLRNLPNLKNLDLSFND--LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELD 215
Query: 406 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465
LS+ + E + S + NL +L+ L LS N LP SI +L NL+ L++ ++ +
Sbjct: 216 LSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL-SNNQISSISS 272
Query: 466 LPPNIIF 472
L
Sbjct: 273 LGSLTNL 279
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLE 285
+P IS + L+++ LSG S P + ++ L L+L S +P S+ L L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 286 LLNLNDCKNFARVPSSINGL 305
+LNLN RVP+++ G
Sbjct: 494 ILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 25/270 (9%)
Query: 49 LLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS--NLQLDKIVEFKMCYSRIEELWKG 106
+ ++ + L L+ +N + +P L + E + ++IE L
Sbjct: 109 ISELLELTNLTSLDLDNN----------NITDIPPLIGLLKSNLKELDLSDNKIESLPSP 158
Query: 107 IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166
+++L LK + LS ++ + NL L L G K+ + P + L + L ++
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLS 217
Query: 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 226
I+ L + L L L +++LP SI +L L L L+ +SS
Sbjct: 218 NNSIIELLSSLSNLKN-------LSGLELSNNKLEDLPESIGNLSNLETLDLS-NNQISS 269
Query: 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 286
+ ++ S LR L LSG S P I + L L ++ + + + L
Sbjct: 270 IS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS---ILL 325
Query: 287 LNLNDCKNFARVPSSINGLKSLKTLNLSGC 316
N P +++ L+SL L
Sbjct: 326 NNNILSNGETSSPEALSILESLNNLWTLDN 355
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 392 LPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNL 449
+P+ +S LR L ++LS + G IP +G++ SL L LS N+F ++P S+ L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 450 KELEMED 456
+ L +
Sbjct: 493 RILNLNG 499
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 287 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP- 345
L L++ +P+ I+ L+ L+++NLSG N+P +LG + SLE LD+S +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 346 PSSVFLMKNLRTLSFSG 362
P S+ + +LR L+ +G
Sbjct: 483 PESLGQLTSLRILNLNG 499
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.97 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.76 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.74 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.73 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.72 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.68 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.53 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.48 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.33 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.13 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.12 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.03 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.96 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.94 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.94 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.92 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.9 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.9 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.81 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.77 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.75 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.61 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.5 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.48 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.47 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.4 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.36 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.35 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.34 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.31 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.27 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.26 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.15 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.14 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.98 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.86 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.84 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.68 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.54 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.33 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.29 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.28 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.23 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.98 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.65 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.64 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.52 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.4 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.2 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.48 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.22 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.18 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.57 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 89.17 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.5 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.5 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.27 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 86.32 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 86.26 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 85.51 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.53 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 82.81 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 82.81 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 81.38 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=489.94 Aligned_cols=536 Identities=28% Similarity=0.420 Sum_probs=340.0
Q ss_pred CccchhHHhhhccCCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCc----------cccCcccccCcCccEE
Q 005207 2 EARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNV----------QLLEGLEYLSNKLRLL 71 (709)
Q Consensus 2 ~~~~i~~vl~~~~g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~----------~l~~~~~~l~~~L~~L 71 (709)
+++||++|+++++|+++|++|.+|.+ .. ++..+..++|.+|++|+.|.+..+ ++++++..+|.+||.|
T Consensus 517 ~~~di~~vl~~~~g~~~v~~i~l~~~-~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 517 DAKDICDVLEDNTGTKKVLGITLDID-EI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred CHHHHHHHHHhCcccceeeEEEeccC-cc-ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 57899999999999999999999999 87 588999999999999999999654 3567888889999999
Q ss_pred EeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccC
Q 005207 72 DWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVH 151 (709)
Q Consensus 72 ~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 151 (709)
+|.+|+++.+|..+.+.+|++|+|++|+++.+|.++..+++|+.|+|+++.....+|+++.+++|++|+|++|..+..+|
T Consensus 595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred EecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999987666666
Q ss_pred cccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 152 PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 152 ~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
.++.. +++|+.|++++|..++.+|..+
T Consensus 675 ~si~~-----------------------------------------------------L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 675 SSIQY-----------------------------------------------------LNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred hhhhc-----------------------------------------------------cCCCCEEeCCCCCCcCccCCcC
Confidence 54333 3333334444444444444433
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcc-------ccccccC
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFAR-------VPSSING 304 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~-------l~~~~~~ 304 (709)
++++|+.|++++|.....+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+.++..... .+.....
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 3555555555555544444432 245666666666666666544 456666666655432110 0111112
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeecccc-ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
.++|+.|++++|.....+|..++++++|+.|++++| .+..+|..+ .+++|++|++++|..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L----------------- 838 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL----------------- 838 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc-----------------
Confidence 345555555555555555555555555555555544 233444333 3455555555555422
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
..+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+
T Consensus 839 ------------------------------~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 839 ------------------------------RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred ------------------------------cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 112211 23455555555555555555555555555555555555554
Q ss_pred CCCC---CCccEEEecCCCCcceecCcc--------------ccccccCcccccccchhcccchhHHHHHHHHHHhhccC
Q 005207 464 PQLP---PNIIFVKVNGCSSLVTLLGAL--------------KLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSD 526 (709)
Q Consensus 464 p~lp---~sL~~L~i~~C~~L~~l~~~~--------------~~~~l~~l~~~~c~~L~~~~~~~~~~~~l~~~~~~~~~ 526 (709)
|..+ ++|+.+++.+|++|+.+.... .......+.|.+|.+|+.... ++ ..
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~-------l~----~~-- 952 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL-------LQ----QQ-- 952 (1153)
T ss_pred CcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-------hc----cc--
Confidence 4322 234444555555554432111 011223467889988763211 11 01
Q ss_pred CCCceeEeccCCCCCccccccCCCceEE-EEcCCCCcCCCceEEEEEEEEEecCCcccccccccccceeeEEEcCCCCCe
Q 005207 527 PLKDFSTVIPGSKIPKWFMYQNEGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGF 605 (709)
Q Consensus 527 ~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 605 (709)
.....+++||.++|+||.||+.|++++ |.+|+.|... .|.||++|+|+....... ......+.+.|.+.+..+..
T Consensus 953 -~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~-~~~~f~~c~v~~~~~~~~--~~~~~~~~~~c~~~~~~~~~ 1028 (1153)
T PLN03210 953 -SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQ-PFFRFRACAVVDSESFFI--ISVSFDIQVCCRFIDRLGNH 1028 (1153)
T ss_pred -ccceEEECCCccCchhccCCcccceeeeeccCCcccCC-CccceEEEEEEecCcccc--CCCceeEEEEEEEECCCCCc
Confidence 111357899999999999999999998 9999999876 799999999997754221 11123456788877665543
Q ss_pred eEeecccccCCCCCeEEEEEecccc---------c-cCc--ccccccceEEEEEecccccccccCCCCCceEEeeeeEEE
Q 005207 606 FITFGGKFSHSGSDHLWLLFLSPRE---------C-YDR--RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPV 673 (709)
Q Consensus 606 ~~~~~~~~~~~~~~h~~~~~~~~~~---------~-~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cG~~li 673 (709)
+. ....+|+|+.|..... . .+. .....++|+.+.|.+. .....++||+|||+++
T Consensus 1029 ~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------~~~~~~~~~~cg~~~~ 1094 (1153)
T PLN03210 1029 FD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLT-------NKNSQLKLKGCGIRLS 1094 (1153)
T ss_pred cc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEe-------cCCCCeEEEeeeEEEe
Confidence 32 2344555555542111 0 000 1112367777777311 1122369999999999
Q ss_pred eecccc
Q 005207 674 YMHEVE 679 (709)
Q Consensus 674 y~~~~~ 679 (709)
|.++..
T Consensus 1095 ~~~~~~ 1100 (1153)
T PLN03210 1095 EDDSSL 1100 (1153)
T ss_pred ccCCCc
Confidence 965544
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=398.06 Aligned_cols=464 Identities=21% Similarity=0.244 Sum_probs=264.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc----cccCcCccEEEeeCCCCCCCCCcCCcCCceE
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVE 92 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~----~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 92 (709)
.+|+.+.+..+ .. ... .+.+|.++++|+.|++++|++.+.+ ..-..+||+|++++|.+....+...+++|++
T Consensus 69 ~~v~~L~L~~~-~i--~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGK-NI--SGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred CcEEEEEecCC-Cc--ccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 45677766665 33 222 3578999999999999998876432 2123689999999888764333346778888
Q ss_pred EEcccCCcc-ccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc--------
Q 005207 93 FKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-------- 162 (709)
Q Consensus 93 L~Ls~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~-------- 162 (709)
|+|++|.+. .+|..+..+++|++|+|++|.+....| .+.++++|++|++++|.....+|..++.+.+|+.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 888888887 567778888888888888887765554 4778888888888887655556655554322211
Q ss_pred ----------CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 163 ----------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 163 ----------l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
+++|++|++++|.+.+.+|..++++++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 234444444444444444444444555555555544443 344444445555555555544444444444
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 45555555555555554445555555555555555555554 34444555555555555555554444444444444444
Q ss_pred EEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccc--cc------------
Q 005207 311 LNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWH--LH------------ 375 (709)
Q Consensus 311 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~------------ 375 (709)
|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|......+... +.
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 444444444445555555556666666666555 344455555555555555554332211100 00
Q ss_pred ----------cccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhh
Q 005207 376 ----------LPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASI 443 (709)
Q Consensus 376 ----------~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i 443 (709)
..........+......|. +..+++|+.|+|++|++. +.+|..+..+++|++|+|++|+++ .+|..+
T Consensus 465 ~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 465 FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred eeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 0000011111111112222 555666666666666664 556666666777777777777766 556666
Q ss_pred hcCCCcCeeccccccccccCCCC---CCCccEEEecCCCCcceec
Q 005207 444 NSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLL 485 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 485 (709)
..+++|+.|++++|+....+|.. .++|+.|++++|+-...++
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 67777777777777665555542 2456777777776555554
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=396.51 Aligned_cols=447 Identities=19% Similarity=0.233 Sum_probs=309.1
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCccc-ccCcCccEEEeeCCCCC-CCCCcC-CcCCce
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLK-SLPSNL-QLDKIV 91 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~ 91 (709)
+...++.+.+..+ +. ...++...|.++++||.|++++|.+.+.+. ....+|++|++++|.+. .+|..+ .+.+|+
T Consensus 91 ~l~~L~~L~Ls~n-~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNN-QL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCC-cc--CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 3456777777766 43 346777788899999999999988765332 12257888888888775 456555 677888
Q ss_pred EEEcccCCcc-ccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc-------
Q 005207 92 EFKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF------- 162 (709)
Q Consensus 92 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~------- 162 (709)
+|+|++|.+. .+|..+.++++|++|+|++|.+....| .+.++++|++|++++|.....+|..++.+.+|+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 8888887765 566677777777777777777655444 4666777777777766544455555554444332
Q ss_pred -----------CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCccc
Q 005207 163 -----------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVA 230 (709)
Q Consensus 163 -----------l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 230 (709)
+++|++|++++|.+.+.+|..+.++++|++|++++|.+. .+|..+.++++|+.|++++|...+.+|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 367888888888888888888888888888888888876 67777888888888888888777777777
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 788888888888888877777777777888888888877776 4555555555666666666555555555555555555
Q ss_pred EEEeeCcCCCccCCccccCCCccceeecccccccc-CCccccc-----------------------ccCCcEEEccCCCC
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFL-----------------------MKNLRTLSFSGCNG 365 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~-----------------------l~~L~~L~L~~~~~ 365 (709)
.|++++|...+.+|..+..+++|+.|++++|.+.. ++..+.. .++|+.|++++|+.
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 55555555555555555555555555555555442 2222333 45555555555554
Q ss_pred CCCCCcccc-ccccccccCccccccccCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChh
Q 005207 366 PPSSASWHL-HLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPAS 442 (709)
Q Consensus 366 ~~~~~~~~~-~~~~~~~~~~~~~~~~~lp-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~ 442 (709)
....+.... ...........+.....+| .+.++++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++. .+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChh
Confidence 322221100 0011111122222222344 3889999999999999996 789999999999999999999998 89999
Q ss_pred hhcCCCcCeeccccccccccCCC
Q 005207 443 INSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 443 i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
+..+++|+.|++++|+....+|.
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999998888885
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-32 Score=278.12 Aligned_cols=384 Identities=21% Similarity=0.196 Sum_probs=308.1
Q ss_pred CCcceEEecCccccCc-----ccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~-----~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.+-+.|+++++.+... ...+|..-+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3467778888877642 3345667888999999988877553 89999999999999999998888888899999
Q ss_pred cCCCCCCCCC-CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeecc
Q 005207 118 LSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196 (709)
Q Consensus 118 Ls~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~ 196 (709)
|.+|.+.... ..++.++.|+.|||+.| .+.+++..-+. .-.++++|+|++|.+...-...|..+.+|..|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp-----~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFP-----AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCC-----CCCCceEEeeccccccccccccccccchheeeecc
Confidence 9999876654 45888899999999987 56666643222 13578899999999988888888999999999999
Q ss_pred CCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC
Q 005207 197 GTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 197 ~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
.|.++.+|... .++++|+.|+|..|..-..--..|.++++|+.|.|..|.+...-...|-.+.++++|+|..|++.++.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 99999998754 45999999999886543332445888999999999999988888888889999999999999999876
Q ss_pred c-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCccc-cccc
Q 005207 276 S-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV-FLMK 353 (709)
Q Consensus 276 ~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~-~~l~ 353 (709)
. ++-.++.|+.|++++|.+...-+++...+++|+.|+|+.|.+...-+..+..+..|++|.|+.|.+..+.... ..++
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 5 4778999999999999998888888888999999999999988888888889999999999999999776654 4589
Q ss_pred CCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 005207 354 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433 (709)
Q Consensus 354 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 433 (709)
+|++|+|+.|........ .-..+.++++|+.|++.+|++. .....++.++++|+.|+|.+
T Consensus 366 sL~~LdLr~N~ls~~IED-------------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIED-------------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hhhhhcCcCCeEEEEEec-------------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCC
Confidence 999999999874321111 1112778999999999999984 33346788999999999999
Q ss_pred CCCcccC-hhhhcCCCcCeeccc
Q 005207 434 NNFVTLP-ASINSLLNLKELEME 455 (709)
Q Consensus 434 n~l~~lp-~~i~~l~~L~~L~L~ 455 (709)
|.|.++. ..+..+ .|++|.+.
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred Ccceeecccccccc-hhhhhhhc
Confidence 9988664 466666 88888765
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-31 Score=270.30 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=309.0
Q ss_pred cceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccc-cccccccCCcEEEcCC
Q 005207 47 LGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSH 120 (709)
Q Consensus 47 L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~ 120 (709)
-+.|++++|.+.. .+..+| +|+.+++..|.++.+|... ...+|+.|+|.+|.|+.+. +.++.++.|+.||||.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4569999999874 345564 9999999999999999877 6677999999999999886 6689999999999999
Q ss_pred CCCCCCC-CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCC
Q 005207 121 SENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD 199 (709)
Q Consensus 121 ~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~ 199 (709)
|.+.... +.|..-.++++|+|++| .++.+... ....+.+|-+|.|+.|++....+..|.++++|+.|++..|.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~-----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASN-RITTLETG-----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccc-cccccccc-----cccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 9886654 67888899999999997 55554332 22336689999999999999888999999999999999999
Q ss_pred cccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC-cc
Q 005207 200 IKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SS 277 (709)
Q Consensus 200 i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~ 277 (709)
|..+ -..+.++.+|+.|.+..|+..+--...|..+.++++|+|+.|++......++-++..|+.|+++.|.|..+. .+
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 9976 567899999999999998877666777888999999999999999888888999999999999999999764 56
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc----cCCccccccc
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR----RPPSSVFLMK 353 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~----~l~~~~~~l~ 353 (709)
....++|+.|+|++|++..--+.++..+..|++|+|+.|++...-...+..+.+|++|||+.|.+. +-...+..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 788999999999999998888888999999999999999887766677888999999999999887 2233455699
Q ss_pred CCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 005207 354 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433 (709)
Q Consensus 354 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 433 (709)
+|+.|.+.||+..... -..+.+++.|++|||.+|.+. ..-|++|..+ .|++|.+..
T Consensus 393 ~LrkL~l~gNqlk~I~----------------------krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIP----------------------KRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCceeeecc----------------------hhhhccCcccceecCCCCcce-eecccccccc-hhhhhhhcc
Confidence 9999999999843211 112889999999999999985 6778899988 999998875
Q ss_pred ------CCCcccChhhh
Q 005207 434 ------NNFVTLPASIN 444 (709)
Q Consensus 434 ------n~l~~lp~~i~ 444 (709)
|++.-++.++.
T Consensus 449 ssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 449 SSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cceEEeccHHHHHHHHH
Confidence 45555555553
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-32 Score=281.08 Aligned_cols=362 Identities=23% Similarity=0.290 Sum_probs=230.2
Q ss_pred CcceEEecCccccCcc-----cccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcC
Q 005207 46 NLGLLKINNVQLLEGL-----EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 119 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~-----~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls 119 (709)
-.|-.|+++|.++++- ..+ +++++|.+...++..+|... .+.+|++|.+++|++..+-..+..++.||.+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3455566666665432 222 45666666666666666655 5666666666666666666666666666666666
Q ss_pred CCCCCC--CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 120 HSENLI--KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 120 ~~~~~~--~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+|++.. .++++-.+..|..|||++| .+.++|..+.. -+++-.|+||+|.+.......+-+++.|-.|++++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~------AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEY------AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchh-hhhhcchhhhh------hcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 665432 2345556666666666664 45555543222 23344455554444433334444444444445544
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc--ccC
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVP 275 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~l~ 275 (709)
|.+..+|+.+.. +..|+.|.|++|.+....-..+..|.+|+.|++++++-+ .+|
T Consensus 160 NrLe~LPPQ~RR------------------------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 160 NRLEMLPPQIRR------------------------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred chhhhcCHHHHH------------------------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 444444444444 445555555554443332233334455555555555433 556
Q ss_pred cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCC
Q 005207 276 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNL 355 (709)
Q Consensus 276 ~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L 355 (709)
.++..+.+|..++++.|. +..+|+.+.++++|+.|+|++|.+.+ +....+...+|++|+++.|.++.+|+.+..+++|
T Consensus 216 tsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred CchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence 666666666666666543 34456666666666666666655433 3334556678888888888888888888888888
Q ss_pred cEEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC
Q 005207 356 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434 (709)
Q Consensus 356 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 434 (709)
+.|.+.+|+... ..+|+ ++.+..|+.+..++|.+ +.+|+.++.|..|+.|.|++|
T Consensus 294 ~kLy~n~NkL~F----------------------eGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 294 TKLYANNNKLTF----------------------EGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred HHHHhccCcccc----------------------cCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhccccc
Confidence 888888877321 13455 78888888899999988 689999999999999999999
Q ss_pred CCcccChhhhcCCCcCeeccccccccccCCC
Q 005207 435 NFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 435 ~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
.+.++|+.|.-|+-|+.|++..|++|..-|+
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999885554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-32 Score=268.07 Aligned_cols=248 Identities=23% Similarity=0.313 Sum_probs=162.4
Q ss_pred hhhcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCc
Q 005207 39 KAFSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLK 114 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 114 (709)
++...-..|+.|++++|.+. .++..++ .|.+|.+++|.+..+|..+ .+..++.|+.++|++..+|+.+..+.+|+
T Consensus 39 e~wW~qv~l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhhcchhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 34444566788888888754 5666664 7888999999998888877 88888999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccC-----------------CCccEEEccCCCCC
Q 005207 115 VMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV-----------------ESLKILILSGCLKL 177 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l-----------------~~L~~L~Ls~~~~~ 177 (709)
.++.++|.....+++++.+..|+.++..+| .+..+|.+++++.++..+ +.|+.||...| ..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LL 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hh
Confidence 999999988888888888889998888776 778888888776544331 23334443332 22
Q ss_pred CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc-CCccCcEEeeeCCCCCCcCchhhc
Q 005207 178 RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVT 256 (709)
Q Consensus 178 ~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~ 256 (709)
+.+|+.++.+.+|..|++..|.+..+| .|..+..|++|.++. +.++.+|.... .+++|.+||+.+|+ .+..|+.+.
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c 272 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC 272 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc-cccCchHHH
Confidence 334444555555555555555555555 445555555555444 23444444432 55556666665543 334455555
Q ss_pred cCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 257 TMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
-+.+|+.||+++|.|+.+|.+++++ .|+.|.+.+|+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 5666666666666666666666666 56666665554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-31 Score=273.14 Aligned_cols=363 Identities=21% Similarity=0.350 Sum_probs=291.9
Q ss_pred ccEEEeeCCCCC--CCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 68 LRLLDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 68 L~~L~l~~~~l~--~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
.|-.++++|.++ .+|.+. .+.+++-|.|..+++..+|+.+..+.+|+.|.+++|++......++.++.|+.++++.|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 455566666654 566666 67777777777777777777777777777777777766555555666666666666554
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCC-CCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLK-LRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN 223 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~-~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (709)
.+ ...+|..+..+..|..|+++.|.++++|..+.+.+++..|+|++| .
T Consensus 89 ------------------------------~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~ 137 (1255)
T KOG0444|consen 89 ------------------------------NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-N 137 (1255)
T ss_pred ------------------------------ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-c
Confidence 32 234666677778888888888888889988888889999999885 4
Q ss_pred CCcCccc-ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCC-Cccccc
Q 005207 224 LSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKN-FARVPS 300 (709)
Q Consensus 224 l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~-~~~l~~ 300 (709)
++.+|.. +-+++-|-.|+|++|. +..+|.....+.+|++|.|++|.+... ...+..+++|+.|.+++.+. +..+|.
T Consensus 138 IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 6667654 5678888899999876 456677788899999999999987632 12344578899999998654 467899
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
++..+.+|..++++.|. +..+|+.+-.+++|+.|+|++|.|+++........+|++|+++.|+.+
T Consensus 217 sld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------------- 281 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------------- 281 (1255)
T ss_pred chhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--------------
Confidence 99999999999999865 567899999999999999999999999999999999999999999844
Q ss_pred ccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 381 MGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 381 ~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.+|. ++.+++|+.|.+.+|++.-+.+|+.++.+..|+++..++|++.-+|+++..|.+|+.|.|++|.
T Consensus 282 ----------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr- 350 (1255)
T KOG0444|consen 282 ----------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR- 350 (1255)
T ss_pred ----------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-
Confidence 2444 7889999999999999998999999999999999999999999999999999999999999884
Q ss_pred cccCCC---CCCCccEEEecCCCCcceecCcc
Q 005207 460 LQFLPQ---LPPNIIFVKVNGCSSLVTLLGAL 488 (709)
Q Consensus 460 L~~lp~---lp~sL~~L~i~~C~~L~~l~~~~ 488 (709)
|..+|+ +.+.|+.|++++-|+|..-+.+.
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 666886 56899999999999999877554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-30 Score=253.74 Aligned_cols=407 Identities=23% Similarity=0.269 Sum_probs=269.6
Q ss_pred hccCCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC---cccccCcCccEEEeeCCCCCCCCCcC-Cc
Q 005207 12 KKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE---GLEYLSNKLRLLDWHRYPLKSLPSNL-QL 87 (709)
Q Consensus 12 ~~~g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~---~~~~l~~~L~~L~l~~~~l~~lp~~~-~l 87 (709)
+.+.......+.+..+ ...+++ .+..++..++.|+.++|.++. .+... .+|+.|+++.|.++.+|+++ .+
T Consensus 63 dl~nL~~l~vl~~~~n----~l~~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDN----KLSQLP-AAIGELEALKSLNVSHNKLSELPEQIGSL-ISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred hhhcccceeEEEeccc----hhhhCC-HHHHHHHHHHHhhcccchHhhccHHHhhh-hhhhhhhccccceeecCchHHHH
Confidence 3333444444444444 223333 455566666666666666443 22333 36777888888888888776 77
Q ss_pred CCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
..|..++..+|+|..+|+++..+.+|..+++.+|++...+|+.-.|+.|++||...| .++.+|+.++.+. +|+
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~------~L~ 209 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLE------SLE 209 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchh------hhH
Confidence 788888888888888888888888888888888877777776555778888887775 6777787777643 344
Q ss_pred EEEccCCCCC----------------------CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 168 ILILSGCLKL----------------------RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 168 ~L~Ls~~~~~----------------------~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.|++..|.+. ....+...++.+|..||+..|+++++|..+.-+.+|..||+++ +.+.
T Consensus 210 ~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is 288 (565)
T KOG0472|consen 210 LLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDIS 288 (565)
T ss_pred HHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-Cccc
Confidence 4555544432 2222233355666666666666666666666666666666665 3345
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCc-----------------------------------------hhhccCCCCCee
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFP-----------------------------------------QIVTTMEDLSEL 264 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~-----------------------------------------~~~~~l~~L~~L 264 (709)
.+|..++++ +|+.|-+.||.+-+.-. .....+.+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 555556666 66666666653311000 000112345556
Q ss_pred eccCccCcccCcccCCCCC---CCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 265 NLDGTSITEVPSSIELLPG---LELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 265 ~L~~~~i~~l~~~~~~l~~---L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
++++-+++.+|.......+ ....+++.|++ ..+|..+..++.+.+.-+..+...+.+|..+..+++|..|++++|.
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~ 446 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL 446 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch
Confidence 6666666666654322222 67788888764 4577777767777777677778888889999999999999999999
Q ss_pred cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 342 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 342 i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
+.++|..++.+..|+.|+++.|+.. .+|. +..+..|+.+-.++|++. ..-++.+
T Consensus 447 Ln~LP~e~~~lv~Lq~LnlS~NrFr------------------------~lP~~~y~lq~lEtllas~nqi~-~vd~~~l 501 (565)
T KOG0472|consen 447 LNDLPEEMGSLVRLQTLNLSFNRFR------------------------MLPECLYELQTLETLLASNNQIG-SVDPSGL 501 (565)
T ss_pred hhhcchhhhhhhhhheecccccccc------------------------cchHHHhhHHHHHHHHhcccccc-ccChHHh
Confidence 9999999999999999999998621 1222 223345666666778884 2333448
Q ss_pred CCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.++.+|..|||.+|.+..+|+.++++++|++|++.+|+.
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 899999999999999999999999999999999999974
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-28 Score=261.04 Aligned_cols=389 Identities=22% Similarity=0.214 Sum_probs=258.4
Q ss_pred ehhhhcCCCCcceEEecCccccC---cccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccC
Q 005207 37 SAKAFSLMTNLGLLKINNVQLLE---GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNM 112 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~~---~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~ 112 (709)
+-++.++.-+|+.|++++|++.. .+..+ .+|+.|.++.|.+.++|... ++.+|++|+|.+|.++.+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 34566666669999999999764 33444 48999999999999999766 899999999999999999999999999
Q ss_pred CcEEEcCCCCCCCCCCCCCCCCCccEEeccCC-------------------ccccccCcccccccc-------------c
Q 005207 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGC-------------------TKLRKVHPSLLLHNK-------------L 160 (709)
Q Consensus 113 L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~l~~~~~~i~~l~~-------------L 160 (709)
|++|++++|.+...++.+..+..++.+..++| .....++..+..+.. +
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 99999999987766554444443333333333 222222222222211 0
Q ss_pred ccC--------------------CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCC
Q 005207 161 IFV--------------------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLND 220 (709)
Q Consensus 161 ~~l--------------------~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 220 (709)
..+ ++|+.|+.++|.+....+ -..-.+|++++++.+.++.+|.++..+.+|+.|+..+
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 001 344444444444432111 1223578888888888888888888888888888887
Q ss_pred CCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCccc----------------------
Q 005207 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI---------------------- 278 (709)
Q Consensus 221 ~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~---------------------- 278 (709)
|.. ..+|..+...++|+.|....|.+ ..+|...+.++.|++|+|..|.+..+|..+
T Consensus 274 N~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 274 NRL-VALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hhH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 654 66666666677777777766553 334555566677777777777776655421
Q ss_pred ----CCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccC
Q 005207 279 ----ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354 (709)
Q Consensus 279 ----~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~ 354 (709)
...+.|+.|++.+|.+....-..+.+.+.||.|+|++|.+.......+.+++.|++|+|++|.++.+|..+..++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 1234566666677766666555666777777777777655444444566777777777777777777777777777
Q ss_pred CcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC
Q 005207 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434 (709)
Q Consensus 355 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 434 (709)
|++|...+|... .+|.+..++.|+.+|++.|++.+..+|..... ++|++||++||
T Consensus 432 L~tL~ahsN~l~------------------------~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL------------------------SFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hHHHhhcCCcee------------------------echhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 777777776632 35567788888888888888877666665544 78888888888
Q ss_pred CCccc-ChhhhcCCCcCeeccc
Q 005207 435 NFVTL-PASINSLLNLKELEME 455 (709)
Q Consensus 435 ~l~~l-p~~i~~l~~L~~L~L~ 455 (709)
.-..+ -..+..+.++...++.
T Consensus 487 ~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 487 TRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cccccchhhhHHhhhhhheecc
Confidence 53222 1233344444444443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-27 Score=256.59 Aligned_cols=419 Identities=21% Similarity=0.228 Sum_probs=294.7
Q ss_pred hhhcCCCCcceEEecCccccCcc----cccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCC
Q 005207 39 KAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNML 113 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~~~----~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L 113 (709)
..|..-. ++.|+++.|.+-..+ .. .-+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|
T Consensus 16 ~i~~~~~-~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 16 QILNNEA-LQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNL 93 (1081)
T ss_pred hhccHHH-HHhhhccccccccCchHHhhh-eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcc
Confidence 3343333 788888887754322 11 135999999999999999888 8999999999999999999999999999
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccccccc-----------C--CCccEEEccCCCCCCcC
Q 005207 114 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-----------V--ESLKILILSGCLKLRKF 180 (709)
Q Consensus 114 ~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~-----------l--~~L~~L~Ls~~~~~~~~ 180 (709)
++++|.+|+....+..+..+.+|+.|++++| ....+|.-+..+..+.. + ..++.+++..+.+.+.+
T Consensus 94 ~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 94 QYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence 9999999987777778999999999999997 56666655544321111 1 23566666667666777
Q ss_pred CccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC
Q 005207 181 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260 (709)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 260 (709)
+..+..+++ .|++.+|.+. -..+..+.+|+.|....+.... + .-.-++|+.|+.+.|.+....+. ..-.+
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l---~~~g~~l~~L~a~~n~l~~~~~~--p~p~n 242 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-L---EISGPSLTALYADHNPLTTLDVH--PVPLN 242 (1081)
T ss_pred hcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce-E---EecCcchheeeeccCcceeeccc--ccccc
Confidence 776666666 6888888776 2344556666666665543222 1 11246788888888877743332 22357
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
|++++++.+.+..+|..++.+.+|+.+.+.+|.+ ..+|..+....+|+.|.+..|. +..+|...+.+.+|++|+|..|
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 8889999999999998888999999999988876 6677778888888888887764 4556777788889999999999
Q ss_pred ccccCCccccc--ccCCcEEEccCCCCCCCCCcccc--ccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCC
Q 005207 341 AVRRPPSSVFL--MKNLRTLSFSGCNGPPSSASWHL--HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 416 (709)
Q Consensus 341 ~i~~l~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~ 416 (709)
.+..+|..+.. ..+|+.|+.+.++.......... .....+....+......+|.+.++.+|+.|+|++|++. .+
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~f 398 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SF 398 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cC
Confidence 99888875543 23366666666664433321111 11111222234455556788899999999999999984 46
Q ss_pred CC-CCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCCC--CCccEEEe
Q 005207 417 PS-DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP--PNIIFVKV 475 (709)
Q Consensus 417 ~~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i 475 (709)
|+ .+.+++.|++|+||||+++.+|..+..++.|++|...+| .+...|++- +.|+.+++
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEec
Confidence 65 477889999999999999988877776666666666555 344444421 34444444
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=247.87 Aligned_cols=339 Identities=28% Similarity=0.432 Sum_probs=252.1
Q ss_pred CCcceEEEEeecCCCC----cceEeeehhhhcCC-CCcceEEecCccccCccc-ccCcCccEEEeeCCCCCCCCCcC-Cc
Q 005207 15 GSELVEGMIIDDYFFP----VNEVHLSAKAFSLM-TNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLKSLPSNL-QL 87 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~----~~~~~l~~~~f~~l-~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~~lp~~~-~l 87 (709)
+..+++-+.+... .. .....++ +.|..+ .+||.|.+.++.+..-+. .-+.+|+.|++.++.++.+|..+ .+
T Consensus 556 ~m~~L~~L~~~~~-~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 556 GMRNLLFLKFYTK-KWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred cCccccEEEEecc-cccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 4555555555332 11 0123343 456666 469999999887543221 12479999999999999999877 89
Q ss_pred CCceEEEcccC-CccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 88 DKIVEFKMCYS-RIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 88 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
++|+.|+|+++ .++.+| .+..+++|+.|+|++|......| .+..+++|+.|++++|..+..+|..+ .+++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~s 705 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------NLKS 705 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------CCCC
Confidence 99999999986 467777 47889999999999998777765 58899999999999999999988765 2678
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
|+.|++++|.....+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... ++..+..+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l----------- 769 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL----------- 769 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc-----------
Confidence 999999999888777754 467889999999999888765 56777777776644211 11111101
Q ss_pred CCCCcCchhhccCCCCCeeeccCcc-CcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTS-ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 324 (709)
.+......++|+.|++++|. +.++|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..+|.
T Consensus 770 -----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 770 -----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred -----chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 11112234678888888774 45788888889999999999998888888776 689999999999988887775
Q ss_pred cccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEE
Q 005207 325 TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 404 (709)
Q Consensus 325 ~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L 404 (709)
. .++|+.|++++|.+..+|..+..+++|+.|++++|+.+...+ +.+..+++|+.|
T Consensus 844 ~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~----------------------~~~~~L~~L~~L 898 (1153)
T PLN03210 844 I---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS----------------------LNISKLKHLETV 898 (1153)
T ss_pred c---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----------------------cccccccCCCee
Confidence 4 467899999999999999988889999999999887544321 114556677777
Q ss_pred eccCCC
Q 005207 405 DLSDCG 410 (709)
Q Consensus 405 ~Ls~n~ 410 (709)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 777774
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-18 Score=189.21 Aligned_cols=257 Identities=21% Similarity=0.229 Sum_probs=150.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcc
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 146 (709)
.-..|+++++.++++|..+. .+|+.|++++|+++.+|.. +++|++|+|++|++... |.+ .++|+.|++.+| .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVL--PPGLLELSIFSN-P 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc-cCc--ccccceeeccCC-c
Confidence 34455555555555555442 3555566666665555532 35556666666554432 221 245556666555 3
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 226 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~ 226 (709)
+..+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+..+|... .+|+.|++++|.. ..
T Consensus 274 L~~Lp~l---------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~ 336 (788)
T PRK15387 274 LTHLPAL---------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TS 336 (788)
T ss_pred hhhhhhc---------hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCCCc---ccccccccccCcc-cc
Confidence 3433321 1345556666655442 3321 345666666666666665422 2455566666443 34
Q ss_pred CcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCC
Q 005207 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 306 (709)
Q Consensus 227 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 306 (709)
+|. + ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+. .+|.. .+
T Consensus 337 LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s 402 (788)
T PRK15387 337 LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PS 402 (788)
T ss_pred ccc-c--ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---cc
Confidence 443 1 2467777777766553 3332 24567777777777777653 346778888777654 34432 35
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCC
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 366 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~ 366 (709)
+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 7888888887654 35543 34678888888888888888888888888998888754
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=186.91 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=207.0
Q ss_pred CCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 45 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
.+-..|+++++.+..-+..++.+|+.|++.+|.++.+|. .+++|++|+|++|+|+.+|.. .++|+.|++++|.+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 346789999999887666677899999999999999997 468999999999999999853 478999999999865
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
..++ ...+|+.|++++| .+..+|.. +++|+.|++++|.+.+ +|.. ...|+.|++++|.++.+|
T Consensus 276 ~Lp~---lp~~L~~L~Ls~N-~Lt~LP~~---------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 276 HLPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred hhhh---chhhcCEEECcCC-cccccccc---------ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 4332 2367899999998 56666642 4679999999997765 4543 246888999999999888
Q ss_pred cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCC
Q 005207 205 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 284 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 284 (709)
.. ..+|+.|++++|+ +..+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|.. .++|
T Consensus 339 ~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L 404 (788)
T PRK15387 339 TL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---PSEL 404 (788)
T ss_pred cc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---ccCC
Confidence 52 2589999999865 4567753 4578899999987664 5543 35799999999999998864 3689
Q ss_pred CEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 285 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 285 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|+++.
T Consensus 405 ~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 405 KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 99999999865 46653 357889999998765 689899999999999999999984
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-18 Score=191.28 Aligned_cols=245 Identities=19% Similarity=0.235 Sum_probs=129.6
Q ss_pred CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCC
Q 005207 46 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
+...|+++++.+...+..+|.+|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE 255 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc
Confidence 35566666666665555556667777777777777765443 467777777777776665442 356667777666553
Q ss_pred CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc
Q 005207 126 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 205 (709)
Q Consensus 126 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 205 (709)
.+..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.+.. +|..+. +.|+.|++++|.+..+|.
T Consensus 256 LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 256 LPERLP--SALQSLDLFHN-KISCLPENLP--------EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CChhHh--CCCCEEECcCC-ccCccccccC--------CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc
Confidence 332232 35666666654 4445554321 356666666665443 333221 356666666666665554
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 285 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 285 (709)
.+. ++|+.|++++|. +..+|..+ .++|+.|++++|.+. .+|..+ .++|+.|+|++|.+..+|..+. +.|+
T Consensus 322 ~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 322 TLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQ 391 (754)
T ss_pred ccc--ccceeccccCCc-cccCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHH
Confidence 332 456666666554 23344433 245566666655443 233322 1355555555555555554332 2455
Q ss_pred EEeccCCCCCccccccc----cCCCCCCEEEeeCcCC
Q 005207 286 LLNLNDCKNFARVPSSI----NGLKSLKTLNLSGCCK 318 (709)
Q Consensus 286 ~L~L~~~~~~~~l~~~~----~~l~~L~~L~L~~~~~ 318 (709)
.|++++|.+. .+|..+ ..++++..|++.+|++
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 5555555443 233222 2234445555555443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=190.02 Aligned_cols=245 Identities=18% Similarity=0.262 Sum_probs=127.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+...|+++++.++.+|..+ +++|+.|+|++|+|+.+|..+. .+|+.|++++|++...+..+ ..+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N- 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSIN- 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCC-
Confidence 45667777777777777644 3567777777777777765543 46677777666544322222 134566666655
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+|..+. .+|+.|+++ +|.+..+|..+. .+|+.|++++|+ +.
T Consensus 252 ~L~~LP~~l~--------s~L~~L~Ls------------------------~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt 296 (754)
T PRK15370 252 RITELPERLP--------SALQSLDLF------------------------HNKISCLPENLP--EELRYLSVYDNS-IR 296 (754)
T ss_pred ccCcCChhHh--------CCCCEEECc------------------------CCccCccccccC--CCCcEEECCCCc-cc
Confidence 3334443221 134444444 444444443332 244444444432 22
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+ .++|+.|++++|.+. .+|..+ .
T Consensus 297 ~LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 297 TLPAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred cCcccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCChhh--c
Confidence 333322 1245555555554432 22211 145666666666666665543 256666666666543 344433 2
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCccccc----ccCCcEEEccCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL----MKNLRTLSFSGCN 364 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~----l~~L~~L~L~~~~ 364 (709)
++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|..+.. ++++..|++.+|.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 46666666666544 3444332 3566677777776666654433 3455555555555
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-20 Score=181.31 Aligned_cols=249 Identities=21% Similarity=0.211 Sum_probs=135.0
Q ss_pred ceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 90 IVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
-++++|..|+|+.||. .|+.+++||.|||++|.+..+.| .|.+++.|-.|-+-+++.++.+|...+. .|.+|+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-----gL~slq 143 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-----GLSSLQ 143 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-----hHHHHH
Confidence 3444444444444442 24444444444444444444333 2444444444444443344444443222 133344
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCC------------CcCcccccCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNL------------SSLPVAISSF 234 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l------------~~lp~~l~~l 234 (709)
.|.+.-|.+.-...+.+..+++|..|.+..|.+..++. .+..+..++.+.+..+... ...|-.++++
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 44444444444444445555555555555555555444 4444444444444443311 0111111111
Q ss_pred -------------------------ccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcccC-cccCCCCCCCEE
Q 005207 235 -------------------------QCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELL 287 (709)
Q Consensus 235 -------------------------~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L 287 (709)
.++..-..+.|......| ..|..+++|++|+|++|+|+.+. .+|..+..+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111111122333333333 34677888888888888888764 457788888888
Q ss_pred eccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 288 NLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 288 ~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
.+..|++...-...|.++..|++|+|.+|.+....|..|..+.+|.+|.+-.|.+.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88888766555566777888888888888888888888888888888888777654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-18 Score=172.11 Aligned_cols=262 Identities=20% Similarity=0.185 Sum_probs=169.7
Q ss_pred EEecCccccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-cccccccCCcEEEcCC-CCCCC
Q 005207 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSH-SENLI 125 (709)
Q Consensus 50 L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~-~~~~~ 125 (709)
.+.++-.+.+.+..+|..-..++++.|+|+.||... .+++|+.|||++|+|+.|. +.|+.+++|..|-+-+ |++..
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 445556677778888999999999999999999765 8999999999999999884 7799999988887777 66655
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK--- 201 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~--- 201 (709)
... .|.++..|+.|.+.-| .+.-++. ..++.+++|..|.+.+|.+...--..+..+..++.+++..|.+.
T Consensus 131 l~k~~F~gL~slqrLllNan-~i~Cir~-----~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN-HINCIRQ-----DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh-hhcchhH-----HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 543 4899999999988776 2332222 22344666777777777655544446667777777777666521
Q ss_pred cc----------CcccccCCC----------------------CcEE---ecCCCCCCCcCcc-cccCCccCcEEeeeCC
Q 005207 202 EL----------PLSIEHLFG----------------------LVQL---TLNDCKNLSSLPV-AISSFQCLRNLKLSGC 245 (709)
Q Consensus 202 ~l----------p~~l~~l~~----------------------L~~L---~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~ 245 (709)
.+ |..++...- ++.+ -.+.|......|. .|.++++|+.|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 11 111111100 1111 0011111122221 2566677777777777
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcC
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 317 (709)
.+...-+.+|.+...+++|.|.+|++..+.. .|..+..|+.|++.+|++....|..|..+.+|.+|++-+|+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7666666666666677777777776665543 35666667777777776666666666666666666665543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-17 Score=169.58 Aligned_cols=260 Identities=23% Similarity=0.244 Sum_probs=143.4
Q ss_pred ccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCCCC------CcCcccccCCccCcEEeeeCCCCCCc
Q 005207 182 HVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNL------SSLPVAISSFQCLRNLKLSGCSKLKK 250 (709)
Q Consensus 182 ~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l------~~lp~~l~~l~~L~~L~Ls~~~~~~~ 250 (709)
..+..+.+|+.|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33344444555555555552 34444455555666665554332 11233445566666666666666544
Q ss_pred CchhhccCCC---CCeeeccCccCcc-----cCcccCCC-CCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcC
Q 005207 251 FPQIVTTMED---LSELNLDGTSITE-----VPSSIELL-PGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 251 ~~~~~~~l~~---L~~L~L~~~~i~~-----l~~~~~~l-~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~ 317 (709)
.+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4444443333 7777777666652 22234445 6777777777765522 23345556677777777776
Q ss_pred CCcc----CCccccCCCccceeecccccccc-----CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccc
Q 005207 318 KLEN----VPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388 (709)
Q Consensus 318 ~~~~----~~~~l~~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (709)
..+. ++..+..+++|+.|++++|.+.. +...+..+++|++|++++|..... ... ..
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-~~~--------------~l 241 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-GAA--------------AL 241 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-HHH--------------HH
Confidence 5532 22334445677777777777652 233445567788888877762210 000 00
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCC---CCCCCCCCCCCCCEEEcCCCCCccc-----ChhhhcC-CCcCeecccccc
Q 005207 389 ALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVTL-----PASINSL-LNLKELEMEDCK 458 (709)
Q Consensus 389 ~~~lp~l~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~l-----p~~i~~l-~~L~~L~L~~c~ 458 (709)
...+ ....+.|+.|++++|.+++. .+...+..+++|+.+++++|.+..- ...+... +.|+.|++.+++
T Consensus 242 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0000 11346788888888877521 1233455567888888888888732 3334444 678888877764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-16 Score=141.31 Aligned_cols=149 Identities=28% Similarity=0.361 Sum_probs=84.9
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
+.+.|.+++|.++.+|+.+ .+.+|+.|++.+|+|+.+|..+..+++|+.|+++-|++...+..|+.+|.|+.|||..|
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn- 112 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN- 112 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-
Confidence 4445555555555555555 55555555555555555555555555555555555554444445555555555555544
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.+. ..+|..|..|+.|+.|+++.|.+.-+|..++++++|+.|.+++|. +
T Consensus 113 -----------------------------nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-l 162 (264)
T KOG0617|consen 113 -----------------------------NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-L 162 (264)
T ss_pred -----------------------------ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-h
Confidence 222 345555666667777777777777777777777777777766643 3
Q ss_pred CcCcccccCCccCcEEeeeCCC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
-.+|..++.++.|++|.+.+|.
T Consensus 163 l~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccce
Confidence 3455555555555555554443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-16 Score=162.61 Aligned_cols=272 Identities=21% Similarity=0.156 Sum_probs=130.1
Q ss_pred EEeeCCCCC--CCCCcC-CcCCceEEEcccCCcc-----ccccccccccCCcEEEcCCCCCCCCC-------CCCCCCCC
Q 005207 71 LDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSENLIKT-------PDFTEAPN 135 (709)
Q Consensus 71 L~l~~~~l~--~lp~~~-~l~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~-------~~~~~l~~ 135 (709)
|++.++.++ ..+..+ .+.+|++|+++++.++ .++..+...++|+.++++++...... ..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555543 222222 4556777777777773 34555666677777777776543200 12444556
Q ss_pred ccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccC-CCCc
Q 005207 136 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHL-FGLV 214 (709)
Q Consensus 136 L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l-~~L~ 214 (709)
|+.|++++|......+..+..+.. . ++|++|++++|.+...... .+...+..+ ++|+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~--~-~~L~~L~ls~~~~~~~~~~-------------------~l~~~l~~~~~~L~ 140 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLR--S-SSLQELKLNNNGLGDRGLR-------------------LLAKGLKDLPPALE 140 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhc--c-CcccEEEeeCCccchHHHH-------------------HHHHHHHhCCCCce
Confidence 666666665332222222222111 1 3355555555544311000 112223333 4444
Q ss_pred EEecCCCCCCC----cCcccccCCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCc-----ccCcccCCC
Q 005207 215 QLTLNDCKNLS----SLPVAISSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSIT-----EVPSSIELL 281 (709)
Q Consensus 215 ~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~-----~l~~~~~~l 281 (709)
.|++++|.... .++..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+. .+...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 44444444331 1222233344555555555544421 1222333445666666655554 123334555
Q ss_pred CCCCEEeccCCCCCcccccccc-----CCCCCCEEEeeCcCCCc----cCCccccCCCccceeeccccccccC-----Cc
Q 005207 282 PGLELLNLNDCKNFARVPSSIN-----GLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRP-----PS 347 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~~~~~-----~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~l-----~~ 347 (709)
++|++|++++|.+.......+. ..+.|+.|++++|.+.. .+...+..+++|+.+++++|.+..- ..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 6666666666655432111111 23567777777766542 2233444556777777777776632 22
Q ss_pred ccccc-cCCcEEEccCCC
Q 005207 348 SVFLM-KNLRTLSFSGCN 364 (709)
Q Consensus 348 ~~~~l-~~L~~L~L~~~~ 364 (709)
.+... +.|++|++.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 22223 567777766553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-15 Score=135.72 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=116.2
Q ss_pred hcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEE
Q 005207 41 FSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVM 116 (709)
Q Consensus 41 f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 116 (709)
+-.|.++..|.+++|.++ .++..+ .+|+.|++.+|+++.+|..+ .+++|+.|++.-|++..+|.+|+.+|-|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 446788899999999976 345555 69999999999999999888 8999999999999999999999999999999
Q ss_pred EcCCCCCCCC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceee
Q 005207 117 KLSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194 (709)
Q Consensus 117 ~Ls~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 194 (709)
||++|.+... +..|-.+..|+.|+|+.| ....+|+.+++ +++|+.|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~------------------------------lt~lqil~ 156 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGK------------------------------LTNLQILS 156 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhh------------------------------hcceeEEe
Confidence 9999986543 235777888888888886 45555555554 44455555
Q ss_pred ccCCCccccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
+..|.+-++|..++.++.|++|.+.+|+ +..+|+.+
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppel 192 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPEL 192 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccce-eeecChhh
Confidence 5555555555555555555555555532 33344333
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-12 Score=150.74 Aligned_cols=201 Identities=25% Similarity=0.326 Sum_probs=118.9
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
++.|++||+++|...+.+|..++.+-+|++|+++++.++.+|..++++..|.+|++..+..+..+|.....+++|++|.+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 44555555555555566677777788899999999999999999999999999999998888888777777999999998
Q ss_pred eCCCCC--CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC----EEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 243 SGCSKL--KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE----LLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 243 s~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~----~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
...... ...-..+..+.+|+.+....... .+...+...++|. .+.+.+ ......+..+..+.+|+.|.+.+|
T Consensus 650 ~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 650 PRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcC
Confidence 775411 12223344555555555544333 1111122223332 222222 223344555667778888888887
Q ss_pred CCCccCCccccC------CCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 317 CKLENVPDTLGQ------VESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 317 ~~~~~~~~~l~~------l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
...+........ ++++..+.+.++.....+.+....++|+.|.+..|+.
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 765443222111 2233333333333333333444455555555555553
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-11 Score=139.17 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=105.6
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--cc---Cc-ccccCcCccEEEeeCC-CCCCCCCcC-CcC
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LL---EG-LEYLSNKLRLLDWHRY-PLKSLPSNL-QLD 88 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~---~~-~~~l~~~L~~L~l~~~-~l~~lp~~~-~l~ 88 (709)
.+++.+++-.+ +. ..+. .+. ..++|++|-+..|. +. .+ +..+ +.|++||+++| .+..+|..+ .+-
T Consensus 523 ~~~rr~s~~~~-~~---~~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 523 NSVRRMSLMNN-KI---EHIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hheeEEEEecc-ch---hhcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhh
Confidence 56677777666 33 1221 222 23379999888874 22 22 4455 59999999976 589999988 799
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCC-CCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
+|++|+++++.|+.+|.++++++.|.+|++..+.....++.+. .+++|++|.+..-. .......+..++.+.+|+
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc----cccchhhHHhhhcccchh
Confidence 9999999999999999999999999999999988766666644 59999999997732 222333344555566666
Q ss_pred EEEccCC
Q 005207 168 ILILSGC 174 (709)
Q Consensus 168 ~L~Ls~~ 174 (709)
.+.....
T Consensus 672 ~ls~~~~ 678 (889)
T KOG4658|consen 672 NLSITIS 678 (889)
T ss_pred hheeecc
Confidence 6666443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-11 Score=125.35 Aligned_cols=206 Identities=25% Similarity=0.241 Sum_probs=127.4
Q ss_pred cCCccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCcccccc-ccCCC
Q 005207 232 SSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSS-INGLK 306 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~ 306 (709)
.++.+|+.+.|.++....... .....+++++.|+|++|=+.. +......+|+|+.|+++.|++.....+. -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345555555555544332211 345566666677776665542 2334566777777777776654322211 12466
Q ss_pred CCCEEEeeCcCCCc-cCCccccCCCccceeeccccc-cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 307 SLKTLNLSGCCKLE-NVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 307 ~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~-i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
.|+.|.+++|.+.. .+...+..+|+|+.|+|..|. +..-......+..|++|+|++|......
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------------- 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------------- 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---------------
Confidence 77788888777653 233344567788888887774 3333333344677888888887744332
Q ss_pred cccccccCCCCCCCCCCCEEeccCCCCCCCCCCCC-----CCCCCCCCEEEcCCCCCcccCh--hhhcCCCcCeeccccc
Q 005207 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-----IGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDC 457 (709)
Q Consensus 385 ~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c 457 (709)
..+..+.++.|+.|+++.|.+.+-..|+. ...+++|+.|+++.|++...+. .+..+++|+.|.+..+
T Consensus 263 ------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 263 ------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 12336677888888888888876666655 5667899999999998876553 5566777777776655
Q ss_pred c
Q 005207 458 K 458 (709)
Q Consensus 458 ~ 458 (709)
+
T Consensus 337 ~ 337 (505)
T KOG3207|consen 337 Y 337 (505)
T ss_pred c
Confidence 4
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-10 Score=122.80 Aligned_cols=181 Identities=24% Similarity=0.342 Sum_probs=104.8
Q ss_pred CcCCceEEEcccCCcccccccccccc-CCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 164 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~-~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~ 164 (709)
....+..|++.+|.++.++.....+. +|+.|++++|++......+..+++|+.|++++| .+..++.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~------------ 180 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPK------------ 180 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhh------------
Confidence 44455555555555555555444443 555555555554443334455555555555554 2333332
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
..+..++|+.|++++|.+..+|..+.....|++|.+++|... ..+..+.++.++..+.+.+
T Consensus 181 ------------------~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 181 ------------------LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred ------------------hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence 222456666677777777777766666666777777765422 2333355666666666555
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccc
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
+.... .+..++.+++++.|++++|.++.++. ++.+.+++.|+++++......+.
T Consensus 242 n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 242 NKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 44332 25556666777777777777777766 67777777777777766555444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-11 Score=120.54 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=114.6
Q ss_pred cCCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCccCcccCcc--cCCCCCCCEEeccCCCCCcc-ccccccCCC
Q 005207 232 SSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSS--IELLPGLELLNLNDCKNFAR-VPSSINGLK 306 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~L~~~~~~~~-l~~~~~~l~ 306 (709)
..+++++.|+|++|-+..- .......+|+|+.|+|+.|.+...-.+ -..++.|+.|.++.|.+... +......+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 3355555555555433321 223445566666666666665532221 23466777777777766522 222344577
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--cccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
+|+.|++.+|............+..|++|+|++|++...+ ...+.++.|+.|+++.|........
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~------------- 289 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP------------- 289 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC-------------
Confidence 7778888777543333333344667888888888887666 5566788888888887763321100
Q ss_pred cccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 005207 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437 (709)
Q Consensus 385 ~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 437 (709)
..........+++|+.|++..|++.+...-..+..+++|+.|.+..|.+.
T Consensus 290 ---d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 290 ---DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ---CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 00000113567899999999999865444556777888888888888776
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-11 Score=118.66 Aligned_cols=240 Identities=25% Similarity=0.265 Sum_probs=144.3
Q ss_pred hhhcCCCCcceEEecCccccC--------cccccCcCccEEEeeCCCC----CCCCCcCCcCCceEEEcccCCccccccc
Q 005207 39 KAFSLMTNLGLLKINNVQLLE--------GLEYLSNKLRLLDWHRYPL----KSLPSNLQLDKIVEFKMCYSRIEELWKG 106 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~--------~~~~l~~~L~~L~l~~~~l----~~lp~~~~l~~L~~L~Ls~n~i~~l~~~ 106 (709)
.....+..+..+++++|.+.. .+... ++||..+|+.--. ..+|... ..+.++
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~ftGR~~~Ei~e~L---------------~~l~~a 87 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDMFTGRLKDEIPEAL---------------KMLSKA 87 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhhhcCCcHHHHHHHH---------------HHHHHH
Confidence 455667778888888887652 22233 2555555543211 1122111 112234
Q ss_pred cccccCCcEEEcCCCCCCCCC-C----CCCCCCCccEEeccCCccccccCcccc-------cccccccCCCccEEEccCC
Q 005207 107 IKHLNMLKVMKLSHSENLIKT-P----DFTEAPNLEELYLEGCTKLRKVHPSLL-------LHNKLIFVESLKILILSGC 174 (709)
Q Consensus 107 ~~~l~~L~~L~Ls~~~~~~~~-~----~~~~l~~L~~L~L~~~~~l~~~~~~i~-------~l~~L~~l~~L~~L~Ls~~ 174 (709)
+..+++|++|+||.|.+.... + -++++..|++|.|.+|..-..-..-++ ..++...-+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 556667777777777664432 2 256788888888888842111111111 2233344578999999888
Q ss_pred CCCCc----CCccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCCCCCc----CcccccCCccCcEEe
Q 005207 175 LKLRK----FPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLK 241 (709)
Q Consensus 175 ~~~~~----~~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~ 241 (709)
++... +...+...+.|+.+.+..|.|. .+-..+.++++|+.|||++|..... +...+..+++|++|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 77643 4456777789999999988876 3445678888999999988776532 334456678888888
Q ss_pred eeCCCCCCcCchhh-----ccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCC
Q 005207 242 LSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 242 Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+++|.+...-...+ ...|+|+.|.+.+|.|+. +...+...+.|+.|++++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88887765443322 345677777777777661 222234455566666666554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-10 Score=111.90 Aligned_cols=131 Identities=30% Similarity=0.370 Sum_probs=72.2
Q ss_pred CCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecc
Q 005207 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338 (709)
Q Consensus 259 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 338 (709)
..|++++|++|.|+.+..+..-.|+++.|+++.|.+... +.+..+++|+.|||+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecc
Confidence 456667777777776666666666666666666554321 124455666677777
Q ss_pred ccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 005207 339 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 418 (709)
Q Consensus 339 ~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~ 418 (709)
+|.++.+..+-..+-+.++|.+++|..- .+..++.+.+|..||+++|++.+-.--.
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE------------------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIE------------------------TLSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHh------------------------hhhhhHhhhhheeccccccchhhHHHhc
Confidence 7766666666666667777777666521 1222444455555555555553222223
Q ss_pred CCCCCCCCCEEEcCCCCCccc
Q 005207 419 DIGNLHSLNELYLSKNNFVTL 439 (709)
Q Consensus 419 ~l~~l~~L~~L~L~~n~l~~l 439 (709)
.++++|.|+.+.|.+|.+..+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccccHHHHHhhcCCCcccc
Confidence 444444444444444444433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=118.47 Aligned_cols=197 Identities=27% Similarity=0.362 Sum_probs=154.9
Q ss_pred eEEecCccccCcccccC--cCccEEEeeCCCCCCCCCcCCcC--CceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 49 LLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNLQLD--KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 49 ~L~l~~~~l~~~~~~l~--~~L~~L~l~~~~l~~lp~~~~l~--~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
.++...+.+......+. +.++.|++.+++++.+|...... +|++|++++|++..++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 47777777743332222 47999999999999999988543 899999999999999988999999999999999977
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
...+..+..++|+.|++++| .+..+|..+.. ...|+++.+++|. ....+..+.++.++..+.+.++.+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~------~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPEIEL------LSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchhhhh------hhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeecc
Confidence 76666668999999999997 67777765532 3458888888886 3334566777888888888888888888
Q ss_pred cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhh
Q 005207 205 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV 255 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 255 (709)
..++.+++++.|++++|. +..++. ++.+.+|+.|+++++......+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccc-cccccc-ccccCccCEEeccCccccccchhhh
Confidence 888888889999998855 444554 7778889999998887776655443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-10 Score=104.75 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=14.3
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCC-CCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~-~~l~~L~~L~L~~~ 144 (709)
++|.|++++|.++.+..-. .+.+|+.|+|++|+|+.+ +++..+++|+.|++++|++....+.+ ..+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 3444444444444443222 234444444444444444 23444444444444444443322222 13444444444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-09 Score=101.13 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=33.6
Q ss_pred eeCCCCCCCCCcCCcCCceEEEcccCCccccccccc-cccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccC
Q 005207 73 WHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIK-HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVH 151 (709)
Q Consensus 73 l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 151 (709)
+..+-++..|...++.++++|+|++|.|+.+. .+. .+.+|+.|+|++|.+.. ++.+..+++|++|++++| .+..+.
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-C
T ss_pred cccccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCC-CCCccc
Confidence 34455666777668888999999999999884 454 68889999999998654 456788888888888887 444443
Q ss_pred cccccccccccCCCccEEEccCCCCCCc-CCccccCCCccceeeccCCCccc
Q 005207 152 PSLLLHNKLIFVESLKILILSGCLKLRK-FPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 152 ~~i~~l~~L~~l~~L~~L~Ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
..+. ..+++|+.|++++|.+... --..++.+++|+.|++.+|.+..
T Consensus 81 ~~l~-----~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EGLD-----KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-----HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cchH-----HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 2221 1256667777776665431 12344555666666666666553
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-11 Score=124.32 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=98.6
Q ss_pred EeeCCCCCCCCCcC---CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcccc
Q 005207 72 DWHRYPLKSLPSNL---QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR 148 (709)
Q Consensus 72 ~l~~~~l~~lp~~~---~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 148 (709)
.|++-.++.+|..- .+..-+..||+.|++..+|..+..+..|..+.|..|.+-..++.+..+..|..|+|+.| .+.
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS 134 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLS 134 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhh
Confidence 34444444444322 45555666777777777776666666677777777666666666666666677777665 455
Q ss_pred ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCc
Q 005207 149 KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228 (709)
Q Consensus 149 ~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp 228 (709)
.+|..+..+ -|+.|-+++|++ +.+|+.++....|..|+.+.|.+..+|+.++++.+|+.|++..|. +..+|
T Consensus 135 ~lp~~lC~l-------pLkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp 205 (722)
T KOG0532|consen 135 HLPDGLCDL-------PLKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLP 205 (722)
T ss_pred cCChhhhcC-------cceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCC
Confidence 555544433 133333333322 223333344444555555555555555555555555555554432 22333
Q ss_pred ccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 229 VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 229 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
..+. .++ |..||++.|++..+|..|..++.|++|-|.+|.
T Consensus 206 ~El~------------------------~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 206 EELC------------------------SLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHh------------------------CCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 3333 222 445555555555555555555555555555554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-10 Score=113.23 Aligned_cols=248 Identities=19% Similarity=0.194 Sum_probs=147.3
Q ss_pred cccccCCcEEEcCCCCCCCCC-----CCCCCCCCccEEeccCCc---cccccCcccccc-cccccCCCccEEEccCCCCC
Q 005207 107 IKHLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT---KLRKVHPSLLLH-NKLIFVESLKILILSGCLKL 177 (709)
Q Consensus 107 ~~~l~~L~~L~Ls~~~~~~~~-----~~~~~l~~L~~L~L~~~~---~l~~~~~~i~~l-~~L~~l~~L~~L~Ls~~~~~ 177 (709)
...+..++.|+|++|.+.... +.+.+.++|+..++++-- ...++|+.+..+ +.|...++|++|+||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 456677788888888765542 246666777777776521 112344333222 23444456777777776655
Q ss_pred CcCC----ccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--
Q 005207 178 RKFP----HVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK-- 250 (709)
Q Consensus 178 ~~~~----~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~-- 250 (709)
...+ +.+.++..|++|.+.+|++...-.. ++. .|..|. . ......-+.|+++...+|.....
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccH
Confidence 4333 2344556666666666665421100 000 000000 0 01133456777777777665432
Q ss_pred --CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcCCC
Q 005207 251 --FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 251 --~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
+...+...+.|+.+.+..|.|.. +...+..++.|+.|+|++|.+... +...+..+++|+.|++++|...
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 33456667788888888887762 234577888888888888876532 3345666788888888888765
Q ss_pred ccCCc----cc-cCCCccceeeccccccc-----cCCcccccccCCcEEEccCCCC
Q 005207 320 ENVPD----TL-GQVESLEELDISETAVR-----RPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 320 ~~~~~----~l-~~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
..-.. .+ ...|+|+.|.+.+|.|+ .+...+...+.|..|+|++|+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 43221 11 23688999999999887 2333445588899999999984
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-09 Score=106.26 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=108.4
Q ss_pred cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccC-CCCCccccccccCCCCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSL 308 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L 308 (709)
.+.-+++|+.+.++.|.-... -.....-|.|+++...+..+...|..+. ...+....-.. ....+..-..+..++.|
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred chHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhh
Confidence 344456666666666543221 1122233556666666665554332110 01111110000 01112222233445667
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccc
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (709)
+++++++|.+. .+-+.+.-.|.++.|+++.|.|..+.. +..+++|+.|++++|..... ..|
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gw---------------- 347 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGW---------------- 347 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhh----------------
Confidence 77777776543 233445556777777777777776654 66677777777777662211 111
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccCh--hhhcCCCcCeecccccc
Q 005207 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 458 (709)
Q Consensus 389 ~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~ 458 (709)
-..+-+++.|.|++|.+. -.+.++.+-+|..||+++|+|..+.+ .|+++|.|+.|.+.+|+
T Consensus 348 ------h~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 ------HLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------HhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 113446677777777663 33456667777788888887775543 67777778887777776
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-10 Score=120.65 Aligned_cols=190 Identities=26% Similarity=0.375 Sum_probs=121.4
Q ss_pred cEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcC
Q 005207 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 238 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 317 (709)
...+++.|.+ ..+|..+..+..|+.+.|..|.+..+|..+.++..|..|+++.|++ ..+|..++.|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN- 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN- 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC-
Confidence 4456666543 3456666677777778888888888888888888888888887764 34565555554 677777664
Q ss_pred CCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCC
Q 005207 318 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 397 (709)
Q Consensus 318 ~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~ 397 (709)
.++.+|..++..+.|..|+.+.|.+..+|+.++.+.+|+.|.+..|...... +.+.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-----------------------~El~- 209 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-----------------------EELC- 209 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-----------------------HHHh-
Confidence 3455666666677777777777777777777777777777777766632111 1122
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh---hcCCCcCeeccccc
Q 005207 398 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI---NSLLNLKELEMEDC 457 (709)
Q Consensus 398 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~c 457 (709)
.-.|..||+|.|++. .+|-.|..+..|++|.|.+|.+.+=|..| +...--++|++.-|
T Consensus 210 ~LpLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 224666666666663 36666666666666666666666665544 23444555555555
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-09 Score=114.12 Aligned_cols=196 Identities=23% Similarity=0.189 Sum_probs=88.9
Q ss_pred cCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCc
Q 005207 87 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 87 l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L 166 (709)
+..+..++++.|.|..+-..+..+++|..|++.+|++......+..+++|++|++++| . |..+..+..++.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~-------I~~i~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-K-------ITKLEGLSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-c-------cccccchhhccch
Confidence 3444444455555554333344555555555555543332222455555555555554 1 2222233334445
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
+.|++++|.+... ..+..++.|+.+++++|.+..+... ...+.+++.+.+.++.....-. +..+..+..+++..|
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccc
Confidence 5555555544321 1222255555566666655554433 3455555555555543222111 222233333344444
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.+...-+.....+..|+.+++++|.+..++..+..++.+..|++.+++.
T Consensus 219 ~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 219 KISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 3332211110000125666666666666655555566666666665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-09 Score=108.59 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=76.5
Q ss_pred ccCCCCcEEecCCCCCCCc--CcccccCCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCc-cCcccC--cccCC
Q 005207 208 EHLFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGT-SITEVP--SSIEL 280 (709)
Q Consensus 208 ~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~-~i~~l~--~~~~~ 280 (709)
..+++|++|+++.|..+.. +-.-..++..++.+.+.||.-.+. +-..-+.+..+.++++..+ .+++.. ..-..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 3455566666666554432 111234455566665556543322 1111223334445554444 222211 11234
Q ss_pred CCCCCEEeccCCCCCcccc--ccccCCCCCCEEEeeCcCCCccCCc--cccCCCccceeeccccccc---cCCccccccc
Q 005207 281 LPGLELLNLNDCKNFARVP--SSINGLKSLKTLNLSGCCKLENVPD--TLGQVESLEELDISETAVR---RPPSSVFLMK 353 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~i~---~l~~~~~~l~ 353 (709)
+..|+.|..++|...+..+ .-..+.++|+.|.+++|........ .-.+.+.|+.+++.++... .+.....+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 6677777777776543322 1234567788888888776443211 1134556666666665433 1222233455
Q ss_pred CCcEEEccCCCC
Q 005207 354 NLRTLSFSGCNG 365 (709)
Q Consensus 354 ~L~~L~L~~~~~ 365 (709)
.|+.|.++.|..
T Consensus 373 ~lr~lslshce~ 384 (483)
T KOG4341|consen 373 RLRVLSLSHCEL 384 (483)
T ss_pred hhccCChhhhhh
Confidence 555555555543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-08 Score=108.21 Aligned_cols=213 Identities=27% Similarity=0.304 Sum_probs=121.7
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.++.+.+..|.+..+-... .+.+|..|++.+|+|+.+...+..+++|++|++++|.+. .+..+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchhhccchhhheeccCc
Confidence 4444445555554422222 556666666666666666544566666666666666543 23345555556667776652
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
+ .....+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..+. .+..+..+..+++..+...
T Consensus 152 -i-------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 152 -I-------SDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred -c-------hhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccce
Confidence 2 222333446667777777766654433 3 566778888888888877544 2223333333455554433
Q ss_pred CcCcccccCCcc--CcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 225 SSLPVAISSFQC--LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 225 ~~lp~~l~~l~~--L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
..-+ +..+.. |+.++++++.+.... ..+..+.++..|++..+.+..+.. +...+.+..+....+..
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL 289 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence 2221 222333 888888887765432 455667788888988888875533 34445555555555543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.2e-07 Score=93.48 Aligned_cols=62 Identities=23% Similarity=0.502 Sum_probs=39.9
Q ss_pred cCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 257 TMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
.+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 35667777777777777762 23467777777777766666544 2467777777765554444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-07 Score=102.48 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=95.6
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999899999999999999999999998 788889999999999999999999999999999999999999
Q ss_pred CcCCCccCCccccCC-Cccceeeccccccc
Q 005207 315 GCCKLENVPDTLGQV-ESLEELDISETAVR 343 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~ 343 (709)
+|.+.+.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999887664 46778888888644
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-07 Score=92.49 Aligned_cols=232 Identities=21% Similarity=0.233 Sum_probs=148.0
Q ss_pred CccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCccCc---ccCcccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 234 FQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 234 l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
...++.|.+.+|.+... ....-.....++.++|.+|.|+ ++...+.++|.|+.|+++.|.+...+...-..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33445555666555432 2233345677888888888887 455567888888888888877543322211345688
Q ss_pred CEEEeeCcCCCc-cCCccccCCCccceeeccccccccCCc---cccc-ccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 309 KTLNLSGCCKLE-NVPDTLGQVESLEELDISETAVRRPPS---SVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 309 ~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~l~~---~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
++|.|.|....- .....+..+|.+++|+++.|+..++-. .+.. -+.+++|+..+|...- |.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~---------- 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WL---------- 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HH----------
Confidence 888888755432 233455677888888888886653311 1111 2355566665554110 00
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccC--hhhhcCCCcCeeccccccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 461 (709)
..+.. -.-+|++..+-+..|.+.+.........++.+..|+|+.++|.+.. +.+.+++.|..|.+++++...
T Consensus 190 ~~~~l------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 NKNKL------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHhH------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00000 2235788888888998866666677788899999999999998554 367899999999999999877
Q ss_pred cCCCCCCCccEEEecCCCCcceecCc
Q 005207 462 FLPQLPPNIIFVKVNGCSSLVTLLGA 487 (709)
Q Consensus 462 ~lp~lp~sL~~L~i~~C~~L~~l~~~ 487 (709)
.+.. ..=+.|-|...++++.+.++
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccC--CcceEEEEeeccceEEecCc
Confidence 6654 23345666677777766544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-09 Score=102.63 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCCeeeccCccCc--ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC--ccccCCCcccee
Q 005207 260 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEEL 335 (709)
Q Consensus 260 ~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L 335 (709)
.|++|||++..|+ .+...+..+.+|+.|.+.++++...+-..+..-.+|+.|++++|+...... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777776 344456777888888888887777666677777888888888887665432 235667778888
Q ss_pred ecccccccc-CCc-cccc-ccCCcEEEccCCC
Q 005207 336 DISETAVRR-PPS-SVFL-MKNLRTLSFSGCN 364 (709)
Q Consensus 336 ~L~~n~i~~-l~~-~~~~-l~~L~~L~L~~~~ 364 (709)
+++.|.+.. ... .+.+ -++|+.|+++|+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 887776652 111 1111 4567777777775
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.7e-07 Score=101.10 Aligned_cols=109 Identities=25% Similarity=0.336 Sum_probs=89.8
Q ss_pred ccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 189 CLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 189 ~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
.++.|+|+++.+. .+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 788888888999999999888878888888889999999999998888888888999999999999
Q ss_pred CccCc-ccCcccCC-CCCCCEEeccCCCCCcc
Q 005207 268 GTSIT-EVPSSIEL-LPGLELLNLNDCKNFAR 297 (709)
Q Consensus 268 ~~~i~-~l~~~~~~-l~~L~~L~L~~~~~~~~ 297 (709)
+|.+. .+|..++. ..++..+++.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99888 67776654 34677888888765443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=91.58 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=99.8
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc-ccccCCcccccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
+..+++++.|++++| .+..+|. -.++|++|.++++ .++.+|..+ +++|++|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------------
Confidence 445688999999998 5555662 2357999999874 455666544 46899999998853221
Q ss_pred ccCccccccccCCCCCCCCCCCEEeccCCCCCC-CCCCCCCCCCCCCCEEEcCCCCCc---ccChhhhcC-CCcCeeccc
Q 005207 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLNELYLSKNNFV---TLPASINSL-LNLKELEME 455 (709)
Q Consensus 381 ~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l-~~L~~L~L~ 455 (709)
+| ++|+.|+++++.... ..+| ++|+.|.+.+++.. .+| ..+ ++|+.|+++
T Consensus 110 -----------LP-----~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is 164 (426)
T PRK15386 110 -----------LP-----ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARID---NLISPSLKTLSLT 164 (426)
T ss_pred -----------cc-----cccceEEeCCCCCcccccCc------chHhheeccccccccccccc---cccCCcccEEEec
Confidence 11 367888887655421 1222 46778887654321 222 123 579999999
Q ss_pred cccccccCCCCCCCccEEEecCCC--CcceecCccccccccCcccccccchh
Q 005207 456 DCKRLQFLPQLPPNIIFVKVNGCS--SLVTLLGALKLCKSNGIVIECIDSLK 505 (709)
Q Consensus 456 ~c~~L~~lp~lp~sL~~L~i~~C~--~L~~l~~~~~~~~l~~l~~~~c~~L~ 505 (709)
+|..+..-+.+|.+|+.|.+..+. +++.. ...-+..+ .+.|.+|.++.
T Consensus 165 ~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~-~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 165 GCSNIILPEKLPESLQSITLHIEQKTTWNIS-FEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred CCCcccCcccccccCcEEEecccccccccCc-cccccccc-EechhhhcccC
Confidence 998776444599999999987643 33322 11222333 57777776654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-08 Score=98.51 Aligned_cols=177 Identities=25% Similarity=0.298 Sum_probs=99.8
Q ss_pred CccceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCc--hhhccCCCCCe
Q 005207 188 ECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP--QIVTTMEDLSE 263 (709)
Q Consensus 188 ~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~ 263 (709)
..|++||++...|+ .+-.-+..|.+|+.|.+.+...-..+...+.+-.+|+.|+++.|+-..... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35777788777776 444455667777777777766555555556666777777777766544322 23455556666
Q ss_pred eeccCccCcc--cCcccC-CCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc---cCCccccCCCccceeec
Q 005207 264 LNLDGTSITE--VPSSIE-LLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE---NVPDTLGQVESLEELDI 337 (709)
Q Consensus 264 L~L~~~~i~~--l~~~~~-~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~L 337 (709)
|+|+.|.+.. +...+. --+ +|+.|+++||...- .+..-...+++|.+|||
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise------------------------~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISE------------------------TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred cCchHhhccchhhhHHHhhhch------------------------hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 6666554431 111111 113 44444444443211 11112234566666666
Q ss_pred cccccc--cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCC
Q 005207 338 SETAVR--RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409 (709)
Q Consensus 338 ~~n~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n 409 (709)
++|... .....+..++.|++|+++.|....... +-.+...|+|.+|++-+|
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~---------------------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET---------------------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHH---------------------eeeeccCcceEEEEeccc
Confidence 665432 334456778889999999988543321 112556677777777665
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.5e-07 Score=68.21 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=25.9
Q ss_pred CceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 89 KIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+|++|++++|+|+.++ ..|..+++|++|++++|++....+ .|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444 234444444444444444433332 2445555555555544
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-08 Score=100.95 Aligned_cols=236 Identities=24% Similarity=0.323 Sum_probs=111.4
Q ss_pred cCCCccceeeccCCC-cc--ccCcccccCCCCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCc--Cchhhcc
Q 005207 185 GSMECLQELLLDGTD-IK--ELPLSIEHLFGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKK--FPQIVTT 257 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~-i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~ 257 (709)
.+++++++|.+.++. ++ .+-..-..+.+|+.|++..|..+....- -..++++|++|++++|..... ......+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 445555666555543 21 1112234566777777777665543221 124567777777777765432 2223334
Q ss_pred CCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCccccc--cccCCCCCCEEEeeCcCCCccCCccccCCCcc
Q 005207 258 MEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSGCCKLENVPDTLGQVESL 332 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 332 (709)
+..++.+.+.+|.-.+ +...-.....+..+++..|..+....- .-..+..|+.|+.++|...+..+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--------- 311 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--------- 311 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---------
Confidence 4445555444432111 111122333344444444432221110 01223444444444443322111
Q ss_pred ceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCC
Q 005207 333 EELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412 (709)
Q Consensus 333 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~ 412 (709)
+..-..+.++|+.|.+++|+.........+ -.+++.|+.+++..|...
T Consensus 312 ------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--------------------~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 312 ------------LWALGQHCHNLQVLELSGCQQFSDRGFTML--------------------GRNCPHLERLDLEECGLI 359 (483)
T ss_pred ------------HHHHhcCCCceEEEeccccchhhhhhhhhh--------------------hcCChhhhhhccccccee
Confidence 011112356777777777764332211110 235566777777776543
Q ss_pred CCC-CCCCCCCCCCCCEEEcCCCCCc------ccChhhhcCCCcCeeccccccccc
Q 005207 413 EGA-IPSDIGNLHSLNELYLSKNNFV------TLPASINSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 413 ~~~-~~~~l~~l~~L~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~ 461 (709)
.+. +...-.+++.|++|.+++|... .+..+-..+..|+.+.+++|+.+.
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 222 3344456677777777766432 122333456667777777776543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=65.88 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 260 DLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
+|++|++++|+++.+|. .|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666665553 3455555555555555554444445555555555555554
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-08 Score=109.82 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
.|...+.+.|++..+..++.-++.|+.|+|++|+....- .+..|+.|++|+|+.|......--....+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 355666677777777777777777777777777654332 445555666666665543322111111222 55555555
Q ss_pred cccccCCcccccccCCcEEEccCC
Q 005207 340 TAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 340 n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
|.++.+- .+.++.+|+.||+++|
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHh
Confidence 5554432 2233444444444443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.2e-07 Score=87.10 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=56.1
Q ss_pred CccEEEeeCCCCCCCCCcC----CcCCceEEEcccCCccc---cccccccccCCcEEEcCCCCCCCCCCCC-CCCCCccE
Q 005207 67 KLRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEE---LWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEE 138 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~----~l~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~Ls~~~~~~~~~~~-~~l~~L~~ 138 (709)
.+..|.+.++.+....... ...+++++||.+|.|.. +..-+.++|.|++|+|+.|++...+..+ ....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445566666665544322 67889999999999884 3334678999999999999877666554 46678888
Q ss_pred EeccCC
Q 005207 139 LYLEGC 144 (709)
Q Consensus 139 L~L~~~ 144 (709)
|.|.|.
T Consensus 126 lVLNgT 131 (418)
T KOG2982|consen 126 LVLNGT 131 (418)
T ss_pred EEEcCC
Confidence 888773
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-07 Score=101.98 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=80.0
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCC--CCCCCccEEeccC
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF--TEAPNLEELYLEG 143 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~--~~l~~L~~L~L~~ 143 (709)
.|...+.+.|.+..+.... -++.|+.|+|++|+++... .+..+++|++|||++|.+.. .|.+ .++. |+.|.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhhh-heeeeecc
Confidence 4444455556665555555 4677788888888887764 67778888888888876433 3332 2344 77888877
Q ss_pred CccccccCcccccccccccCCCccEEEccCCCCCCcC-CccccCCCccceeeccCCCcc
Q 005207 144 CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF-PHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 144 ~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~-~~~l~~l~~L~~L~l~~~~i~ 201 (709)
| .++ .+..+.+|++|+.||++.|-+.+.- -..++.+..|+.|+|.||.+.
T Consensus 242 N-~l~-------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 N-ALT-------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred c-HHH-------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6 222 3445556777888888887665432 234556677788888888765
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=72.69 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=65.0
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCC-CCCCccEEeccCCccccccCcccccccccccCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 164 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~ 164 (709)
...+...+||++|.+..+ ..+..++.|.+|.|++|++....|.+. -+++|..|.|.+| ++.+ ++.+..|..+|
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~----l~dl~pLa~~p 113 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQE----LGDLDPLASCP 113 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhh----hhhcchhccCC
Confidence 445666777777777665 356677777777777777777666655 3456777777776 3332 34455555566
Q ss_pred CccEEEccCCCCCCcC---CccccCCCccceeeccCC
Q 005207 165 SLKILILSGCLKLRKF---PHVVGSMECLQELLLDGT 198 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~---~~~l~~l~~L~~L~l~~~ 198 (709)
.|++|.+-+|+....- ...+..+++|+.||+.+-
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666666554321 133455556666655543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.3e-06 Score=81.54 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=112.1
Q ss_pred hhcCCCCcceEEecCccccC-cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcc-----------cccccc
Q 005207 40 AFSLMTNLGLLKINNVQLLE-GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE-----------ELWKGI 107 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~-~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~-----------~l~~~~ 107 (709)
....|..++.+++++|.+.. ....+...++ +-++|++.+++.-... -+...+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia----------------~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL 88 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIA----------------NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL 88 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHh----------------hhcceeEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence 34457778888888888763 3333322221 2345666666543222 122345
Q ss_pred ccccCCcEEEcCCCCCCCCCC-----CCCCCCCccEEeccCCccccccC-ccc-------ccccccccCCCccEEEccCC
Q 005207 108 KHLNMLKVMKLSHSENLIKTP-----DFTEAPNLEELYLEGCTKLRKVH-PSL-------LLHNKLIFVESLKILILSGC 174 (709)
Q Consensus 108 ~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~-~~i-------~~l~~L~~l~~L~~L~Ls~~ 174 (709)
-+||+|+.++||.|.+....| -+++.++|++|.+++|. +..+. .-| +..++...-|.|+++....|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 688999999999998866554 37788999999999984 33221 111 12234444578888888888
Q ss_pred CCCCcCC----ccccCCCccceeeccCCCccc------cCcccccCCCCcEEecCCCCCCCc----CcccccCCccCcEE
Q 005207 175 LKLRKFP----HVVGSMECLQELLLDGTDIKE------LPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNL 240 (709)
Q Consensus 175 ~~~~~~~----~~l~~l~~L~~L~l~~~~i~~------lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L 240 (709)
++..... ..+..-.+|+.+.+..|.|.. +-..+..+.+|+.|++.+|..... +..++...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 7654322 233444678888888888761 112345566777777776654321 22223334455666
Q ss_pred eeeCCCCC
Q 005207 241 KLSGCSKL 248 (709)
Q Consensus 241 ~Ls~~~~~ 248 (709)
.+.+|-+.
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 66555444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.6e-05 Score=54.79 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCC
Q 005207 425 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
+|++|++++|+|+.+|+.+.+|++|+.|++++|+ ++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666656666666666666663 44333
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.7e-05 Score=90.34 Aligned_cols=133 Identities=23% Similarity=0.267 Sum_probs=89.4
Q ss_pred CCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCC
Q 005207 134 PNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 211 (709)
Q Consensus 134 ~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~ 211 (709)
.+|++|+++|...+. ..+..++.+ +|+|+.|.+++-.+. ..+-....++++|..||+++++++.+ ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 577788887754332 233334443 788888888875543 33445667889999999999999988 6888999
Q ss_pred CCcEEecCCCCCCC-cCcccccCCccCcEEeeeCCCCCCcC------chhhccCCCCCeeeccCccCc
Q 005207 212 GLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLKKF------PQIVTTMEDLSELNLDGTSIT 272 (709)
Q Consensus 212 ~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~------~~~~~~l~~L~~L~L~~~~i~ 272 (709)
+|+.|.+.+-.... ..-..+.++++|++||+|........ -+....+|+|+.||.+++.+.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99998887644332 11113566899999999876554332 122245788888888887776
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.2e-05 Score=52.88 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=21.0
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCC
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 123 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~ 123 (709)
+|++|++++|+|+.++..+.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666665566666666666666654
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00022 Score=66.41 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=82.0
Q ss_pred ceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccccc-ccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L~Ls~~~~~ 124 (709)
+.+++.+.+++. .+...-.+.-.+++++|.+..++..-.+++|..|.|.+|+|+.+...+ ..+++|+.|.|.+|.+.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 344444444432 223333567778888888887776558888888888888888886655 45667888888888764
Q ss_pred CC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC
Q 005207 125 IK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL 175 (709)
Q Consensus 125 ~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~ 175 (709)
.. ...+..+|.|+.|.+-+|+.-.. .. ..+--+..+|+|++||...-.
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~--YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHK-KN--YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcc-cC--ceeEEEEecCcceEeehhhhh
Confidence 33 45677888888888888742221 11 112224447888888887643
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=9.1e-05 Score=71.82 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=53.8
Q ss_pred cCCCCCeeeccCccCcccCc-----ccCCCCCCCEEeccCCCCCcccc-----ccccCCCCCCEEEeeCcCCCcc----C
Q 005207 257 TMEDLSELNLDGTSITEVPS-----SIELLPGLELLNLNDCKNFARVP-----SSINGLKSLKTLNLSGCCKLEN----V 322 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~-----~~~~l~~L~~L~L~~~~~~~~l~-----~~~~~l~~L~~L~L~~~~~~~~----~ 322 (709)
.-|.|+......|++...+. .+..-.+|+.+.+..|.+...-- ..+..+.+|+.|++..|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34556666666666554332 12223456666666554432210 1123456666666666655432 2
Q ss_pred CccccCCCccceeecccccccc-CCcccc------cccCCcEEEccCCC
Q 005207 323 PDTLGQVESLEELDISETAVRR-PPSSVF------LMKNLRTLSFSGCN 364 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~~-l~~~~~------~l~~L~~L~L~~~~ 364 (709)
...+...+.|++|.+.+|-++. -...+. ..|+|..|-..+|.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 2334455566777776665551 111111 25666666666655
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=8e-06 Score=70.92 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=45.9
Q ss_pred CccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccC
Q 005207 67 KLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 143 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~ 143 (709)
+|+..++++|.++.+|..| ..+.++.|+|++|.|..+|+.+..++.|+.|+++.|.+...+..+..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 5555666666666666655 4456666666666666666666666666666666665555444444445555555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00013 Score=83.40 Aligned_cols=131 Identities=24% Similarity=0.342 Sum_probs=85.5
Q ss_pred CCcEEecCCCCCCC-cCcccc-cCCccCcEEeeeCCCCC-CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEe
Q 005207 212 GLVQLTLNDCKNLS-SLPVAI-SSFQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLN 288 (709)
Q Consensus 212 ~L~~L~L~~~~~l~-~lp~~l-~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 288 (709)
+|++|++++..... ..|..+ ..+|+|+.|.+.+-.+. ..+.....++|+|..||++++.++.+ .+++.+++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 55556665533221 112222 34788888888875553 23455667889999999999999888 6788899999999
Q ss_pred ccCCCCCc-cccccccCCCCCCEEEeeCcCCCccC------CccccCCCccceeeccccccc
Q 005207 289 LNDCKNFA-RVPSSINGLKSLKTLNLSGCCKLENV------PDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 289 L~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~------~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+.+-.+.. ..-..+.+|++|+.||+|.-...... -+.-..+|.|+.||.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88755433 11234567889999999875543321 122234778888888877766
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=2.5e-05 Score=67.90 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=65.4
Q ss_pred CccEEEeeCCCCCCCCCcC----CcCCceEEEcccCCcccccccc-ccccCCcEEEcCCCCCCCCCCCCCCCCCccEEec
Q 005207 67 KLRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYL 141 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~----~l~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L 141 (709)
.+-.++++.|++..++... ...+|+..+|++|.++.+|+.| ..++.++.|+|++|++...+..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4455666677666555433 5566777788888887777554 3455777788888777666666777788888888
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK 176 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~ 176 (709)
+.| .+...|..+.. |.+|-.|+..+|..
T Consensus 108 ~~N-~l~~~p~vi~~------L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 108 RFN-PLNAEPRVIAP------LIKLDMLDSPENAR 135 (177)
T ss_pred ccC-ccccchHHHHH------HHhHHHhcCCCCcc
Confidence 776 34444544444 23344455555543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0001 Score=82.23 Aligned_cols=110 Identities=30% Similarity=0.493 Sum_probs=50.6
Q ss_pred CCCCcEEecCCCCCCCc--CcccccCCccCcEEeeeCC-CCCCcCc----hhhccCCCCCeeeccCcc-Cccc--CcccC
Q 005207 210 LFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGC-SKLKKFP----QIVTTMEDLSELNLDGTS-ITEV--PSSIE 279 (709)
Q Consensus 210 l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~L~~~~-i~~l--~~~~~ 279 (709)
++.|+.|.+..|..+.. +-.....++.|+.|++++| ......+ .....+++|+.|+++.+. +++. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555555443 2233444566666666552 2111111 223344555566665554 3321 11122
Q ss_pred CCCCCCEEeccCCCC-Cc-cccccccCCCCCCEEEeeCcCCC
Q 005207 280 LLPGLELLNLNDCKN-FA-RVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 280 ~l~~L~~L~L~~~~~-~~-~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
.+++|+.|.+.+|.. .. .+-.....+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666555553 11 11122334556666666665554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00069 Score=65.94 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=40.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccC--Ccc-ccccccccccCCcEEEcCCCCCCC--CCCCCCCCCCccEEec
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYS--RIE-ELWKGIKHLNMLKVMKLSHSENLI--KTPDFTEAPNLEELYL 141 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n--~i~-~l~~~~~~l~~L~~L~Ls~~~~~~--~~~~~~~l~~L~~L~L 141 (709)
.|+.|++.+..++++...-.+++|+.|.++.| ++. .+.-....+|+|++|+|++|++.. .++.+..+.+|..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 34444444444444433335556666666666 332 232233445666666666666532 2334556666667777
Q ss_pred cCCc
Q 005207 142 EGCT 145 (709)
Q Consensus 142 ~~~~ 145 (709)
.+|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 6663
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00098 Score=64.90 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=61.7
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCC--CCCCCCCC-CCCCCCccEEeccCCccccccCccccccccccc
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHS--ENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~--~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
....|+.|++.+..++.+ ..+..+++|+.|.++.| ......+. ...+|+|++|++++|. +.. +..+.-+..
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~----lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD----LSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc----ccccchhhh
Confidence 566777777777777765 45678899999999999 54444443 4466999999999983 222 344555666
Q ss_pred CCCccEEEccCCCCCC
Q 005207 163 VESLKILILSGCLKLR 178 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~ 178 (709)
+++|..|++..|....
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 7778888888876554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00023 Score=79.48 Aligned_cols=85 Identities=32% Similarity=0.457 Sum_probs=45.6
Q ss_pred CCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCc--cCccc----CcccCCCCCCCEEeccCCCCC-cccccccc
Q 005207 233 SFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGT--SITEV----PSSIELLPGLELLNLNDCKNF-ARVPSSIN 303 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~--~i~~l----~~~~~~l~~L~~L~L~~~~~~-~~l~~~~~ 303 (709)
.++.|+.|.+.+|..... .......+++|+.|+++++ .+... ......+++|+.|+++.+... ...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367788888887766655 3355566777888877763 11111 112344566666666665532 11111111
Q ss_pred -CCCCCCEEEeeCcC
Q 005207 304 -GLKSLKTLNLSGCC 317 (709)
Q Consensus 304 -~l~~L~~L~L~~~~ 317 (709)
.+++|++|.+.+|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 25556666655554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.00024 Score=69.25 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc--ccccccCCcEEEc
Q 005207 43 LMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK--GIKHLNMLKVMKL 118 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~--~~~~l~~L~~L~L 118 (709)
.+.+.+.|++.++.+.+ ....+| .|++|.++-|.++++...-.+++|++|.|+.|.|..+.+ -++++|+|+.|-|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 35567777787777764 234443 788888888888888776688888888888888887753 3678888888888
Q ss_pred CCCCCCCCCC------CCCCCCCccEEe
Q 005207 119 SHSENLIKTP------DFTEAPNLEELY 140 (709)
Q Consensus 119 s~~~~~~~~~------~~~~l~~L~~L~ 140 (709)
..|.-....+ -+..+|||++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8776554432 244566776665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.00031 Score=68.52 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=48.7
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
+.+.|++-++.+..+ .-...++.|++|.|+-|++.+ ...+..|++|++|+|+.| .+. ++..+..|+.+++|++
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN-~I~----sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKN-CIE----SLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhc-ccc----cHHHHHHHhcCchhhh
Confidence 334444444444433 123344444444444444322 223455566666666654 121 3344455556666777
Q ss_pred EEccCCCCCCcCC-----ccccCCCccceee
Q 005207 169 LILSGCLKLRKFP-----HVVGSMECLQELL 194 (709)
Q Consensus 169 L~Ls~~~~~~~~~-----~~l~~l~~L~~L~ 194 (709)
|.|..|+-.+.-+ .++.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7666665544333 2345566666665
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.055 Score=48.07 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=50.6
Q ss_pred eeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-ccccc
Q 005207 35 HLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-KGIKH 109 (709)
Q Consensus 35 ~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-~~~~~ 109 (709)
.|...+|.++++|+.+.+.+.- +......-..+|+.+.+.++ +..++... .+..|+.+.+.+ .+..++ ..+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred EECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3556677777777777765321 22222222246777777663 66666433 565777777765 555555 34666
Q ss_pred ccCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccC
Q 005207 110 LNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEG 143 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~ 143 (709)
+++|+.+.+..+ +... ...|.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777877777654 2222 2346666 777777765
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.091 Score=46.60 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCc
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKI 90 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L 90 (709)
++.+++.+.+... ...+...+|+.+++|+.+.+.++- +......-..+|+.+.+.. .+..++... .+.+|
T Consensus 10 ~~~~l~~i~~~~~-----~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPNT-----IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETST-------EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECCC-----eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccc
Confidence 4446666665532 346777777777777777776531 1222222223677777754 555555433 47777
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCCCCCCCCc
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPDFTEAPNL 136 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L 136 (709)
+.+.+..+ +..++. .+.+. +|+.+.+..+-.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSNITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCCccEECCccccccccC
Confidence 77777654 665553 35565 7777776653111111235555554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.016 Score=33.85 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=11.9
Q ss_pred CCCEEEcCCCCCcccChhhh
Q 005207 425 SLNELYLSKNNFVTLPASIN 444 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~ 444 (709)
+|++|+|++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.023 Score=33.17 Aligned_cols=21 Identities=0% Similarity=0.083 Sum_probs=12.9
Q ss_pred CceEEEcccCCcccccccccc
Q 005207 89 KIVEFKMCYSRIEELWKGIKH 109 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~ 109 (709)
+|++|+|++|+|+.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.058 Score=29.19 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=5.5
Q ss_pred CCCEEEcCCCCCccc
Q 005207 425 SLNELYLSKNNFVTL 439 (709)
Q Consensus 425 ~L~~L~L~~n~l~~l 439 (709)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.16 Score=27.46 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=5.7
Q ss_pred CccEEEeeCCCCCCCC
Q 005207 67 KLRLLDWHRYPLKSLP 82 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp 82 (709)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444455544444443
|
... |
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.26 Score=27.78 Aligned_cols=19 Identities=47% Similarity=1.121 Sum_probs=17.1
Q ss_pred CceEEEcccCCcccccccc
Q 005207 89 KIVEFKMCYSRIEELWKGI 107 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~ 107 (709)
+|++|+|++++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5899999999999999875
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.42 Score=28.97 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.0
Q ss_pred CCCCCEEEcCCCCCcccChhh
Q 005207 423 LHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i 443 (709)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.42 Score=28.97 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.0
Q ss_pred CCCCCEEEcCCCCCcccChhh
Q 005207 423 LHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i 443 (709)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.017 Score=55.17 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=56.9
Q ss_pred ehhhhcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccC
Q 005207 37 SAKAFSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNM 112 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~ 112 (709)
+-.......+.+.||++.|++. ..+..+ ..|..|+++.|++..+|.++ ....++.+++..|+.+++|.+++..++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 3345566677777777777654 222222 56666777777777777777 667777777777777777777777777
Q ss_pred CcEEEcCCCC
Q 005207 113 LKVMKLSHSE 122 (709)
Q Consensus 113 L~~L~Ls~~~ 122 (709)
++++++-++.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 7777766665
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.32 E-value=0.0063 Score=66.72 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCCCeeeccCccCcc-----cCcccCCCCC-CCEEeccCCCCCcc----ccccccCC-CCCCEEEeeCcCCCccC----
Q 005207 258 MEDLSELNLDGTSITE-----VPSSIELLPG-LELLNLNDCKNFAR----VPSSINGL-KSLKTLNLSGCCKLENV---- 322 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~-----l~~~~~~l~~-L~~L~L~~~~~~~~----l~~~~~~l-~~L~~L~L~~~~~~~~~---- 322 (709)
..++++|+++++.++. +...+...+. +..|++..|..... +...+..+ ..+++++++.|++.+.-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455555555555541 1112333333 44455555544322 11222333 45566666666554432
Q ss_pred CccccCCCccceeeccccccc
Q 005207 323 PDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~ 343 (709)
...+..++.++++.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 233344556666666666554
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.0069 Score=66.41 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCccEEEccCCCCCC----cCCccccCCCccceeeccCCCcc
Q 005207 164 ESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~ 201 (709)
..|++|++..|.+.. .+.+.+.....++.++++.|.+.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 345555555555442 23344555666666666666653
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.51 E-value=0.15 Score=48.14 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=19.4
Q ss_pred CCCCEEEcCCC-CCcc-cChhhhcCCCcCeeccccc
Q 005207 424 HSLNELYLSKN-NFVT-LPASINSLLNLKELEMEDC 457 (709)
Q Consensus 424 ~~L~~L~L~~n-~l~~-lp~~i~~l~~L~~L~L~~c 457 (709)
++|+.|+|++| +|++ --.++..+++|+.|.+.+-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 56666666665 3442 1235566666666666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.53 E-value=0.34 Score=45.78 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=49.3
Q ss_pred CCCEEEcCCCCCccc-ChhhhcCCCcCeecccccccc-----ccCCCCCCCccEEEecCCCCcceecC--ccccccccCc
Q 005207 425 SLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRL-----QFLPQLPPNIIFVKVNGCSSLVTLLG--ALKLCKSNGI 496 (709)
Q Consensus 425 ~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L-----~~lp~lp~sL~~L~i~~C~~L~~l~~--~~~~~~l~~l 496 (709)
.++.++-+++.|... -+.+..++.++.|.+.+|+.+ +.+..+.++|+.|++++|+.+++-.- ...+.+++.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666665522 134567778888888888765 35556778999999999998877431 1123344444
Q ss_pred cccccc
Q 005207 497 VIECID 502 (709)
Q Consensus 497 ~~~~c~ 502 (709)
.+.+.+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 444433
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=82.81 E-value=0.84 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.6
Q ss_pred CCccceeeccccccccCCcccc
Q 005207 329 VESLEELDISETAVRRPPSSVF 350 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~ 350 (709)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=82.81 E-value=0.84 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.6
Q ss_pred CCccceeeccccccccCCcccc
Q 005207 329 VESLEELDISETAVRRPPSSVF 350 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~ 350 (709)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.38 E-value=0.064 Score=51.45 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=47.7
Q ss_pred cCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 66 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
...+.||++.|++-.+-..+ .+..|+.|+++.|+|..+|+.++....++.+++..|.....+-.+...+.++++++.++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 45566666666665555555 55666666666666666666666666666666665554444445556666666665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 709 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 1e-10 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 2e-08 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 1e-04 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 2e-53
Identities = 69/326 (21%), Positives = 121/326 (37%), Gaps = 42/326 (12%)
Query: 156 LHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQ 215
H+ + L G LR + V+ + + + Q
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANS-NNPQ 59
Query: 216 LTLNDCKNLSSLPVAI--SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 273
+ + L + + ++ L+L L +FP + L + +D + E
Sbjct: 60 IETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLME 118
Query: 274 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVE--- 330
+P +++ GLE L L +P+SI L L+ L++ C +L +P+ L +
Sbjct: 119 LPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 331 ------SLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384
+L+ L + T +R P+S+ ++NL++L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-------------------- 217
Query: 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS-KNNFVTLPASI 443
L AL P++ L L +LDL C P G L L L +N +TLP I
Sbjct: 218 --LSAL-GPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 444 NSLLNLKELEMEDCKRLQFLPQLPPN 469
+ L L++L++ C L LP L
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 9e-50
Identities = 70/352 (19%), Positives = 117/352 (33%), Gaps = 52/352 (14%)
Query: 133 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 192
+ E LY +G T LR H+ L + + + + Q
Sbjct: 11 SSGRENLYFQGSTALRP------YHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQI 60
Query: 193 LLLDGTDIKELPLSIEHL--FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK 250
G +K +E G V L L L P L+++ + L +
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLME 118
Query: 251 FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI-------- 302
P + L L L + +P+SI L L L++ C +P +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 303 -NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFS 361
GL +L++L L + ++P ++ +++L+ L I + + ++ + L L
Sbjct: 179 HQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 362 GCNGPPSSASWHL-HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC-GLGEGAIPSD 419
GC L + P P G L +L L DC L +P D
Sbjct: 238 GCT--------ALRNYP---------------PIFGGRAPLKRLILKDCSNLLT--LPLD 272
Query: 420 IGNLHSLNELYLSKN-NFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNI 470
I L L +L L N LP+ I L + + + Q P
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-41
Identities = 61/285 (21%), Positives = 100/285 (35%), Gaps = 28/285 (9%)
Query: 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265
H G L L +S +Q N + + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIET 62
Query: 266 LDGTSITEVPSSIELL--PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323
G ++ +E PG L L + P L L+ + + L +P
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTID-AAGLMELP 120
Query: 324 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383
DT+ Q LE L ++ +R P+S+ + LR LS C LP L
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE-------LPEPLAST 173
Query: 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 443
+ GL +L L L G+ +P+ I NL +L L + + L +I
Sbjct: 174 DA------SGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALGPAI 225
Query: 444 NSLLNLKELEMEDCKRLQFLP----QLPPNIIFVKVNGCSSLVTL 484
+ L L+EL++ C L+ P + + + CS+L+TL
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTL 269
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 4e-40
Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 26/302 (8%)
Query: 41 FSLMTNLGLLKINNVQLLEGLEYL--SNKLRLLDWHRYPLKSLPS---NLQLDKIVEFKM 95
+++ + SN ++ LK+ + V ++
Sbjct: 29 HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88
Query: 96 CYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSL 154
+ + L+ L+ M + + L++ PD + LE L L LR + S+
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASI 146
Query: 155 LLHNKLIFVESLKILILSGCLKLRKFPHVVGS---------MECLQELLLDGTDIKELPL 205
L L+ L + C +L + P + S + LQ L L+ T I+ LP
Sbjct: 147 ---ASL---NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265
SI +L L L + + LS+L AI L L L GC+ L+ +P I L L
Sbjct: 201 SIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 266 L-DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324
L D +++ +P I L LE L+L C N +R+PS I L + + + +
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP-HLQAQLDQ 318
Query: 325 TL 326
Sbjct: 319 HR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 63/300 (21%), Positives = 115/300 (38%), Gaps = 27/300 (9%)
Query: 78 LKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTE---A 133
L+ L Q + + +R W+ + N ++ + L T D E
Sbjct: 25 LRPYHDVLSQWQR--HYNADRNRWHSAWR-QANSNNPQIETRTGR-ALKATADLLEDATQ 80
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
P L L L + +L L+ + + L + P + L+ L
Sbjct: 81 PGRVALELRSV-PLPQFPDQA---FRL---SHLQHMTIDAA-GLMELPDTMQQFAGLETL 132
Query: 194 LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSF---------QCLRNLKLSG 244
L ++ LP SI L L +L++ C L+ LP ++S L++L+L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE- 191
Query: 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304
+ ++ P + +++L L + + ++ + +I LP LE L+L C P G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE-TAVRRPPSSVFLMKNLRTLSFSGC 363
LK L L C L +P + ++ LE+LD+ + R PS + + +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 68/477 (14%), Positives = 145/477 (30%), Gaps = 75/477 (15%)
Query: 52 INNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLN 111
+ +L + + + + L D + + ++ + K +
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS- 424
Query: 112 MLKVMKLSHSENLIKT--PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV------ 163
LK ++ + N I L+ +Y + ++ +
Sbjct: 425 -LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYEN 482
Query: 164 --------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDG----------TDIKELPL 205
+ L + L C + + P + + LQ L + D L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542
Query: 206 SIEHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
+ + + NL P ++ L L K++ T L++
Sbjct: 543 DEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAF-GTNVKLTD 599
Query: 264 LNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSGCCKLE 320
L LD I E+P +E L + K +P+ + + + +++ S K+
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIG 657
Query: 321 NVPDTLG------QVESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWH 373
+ + + + + +S +++ P+ +F + T+ S
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL--------- 708
Query: 374 L-HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI--GNLHSLNELY 430
+ +P N + + LT +DL L + D L L+ +
Sbjct: 709 MTSIPENSLKPKD-------GNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMD 759
Query: 431 LSKNNFVTLPASINSLLNLKELEMEDCKRL---QFLPQLPPNIIFVKVNGCSSLVTL 484
+S N F + P + LK + + + L Q P I C SL+ L
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-----TTCPSLIQL 811
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-28
Identities = 51/414 (12%), Positives = 115/414 (27%), Gaps = 58/414 (14%)
Query: 104 WKGIKHLNMLKVMKLSHSENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL 160
G+ N +V LS + K + L+ L G
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETVSGRLFGDEELT 372
Query: 161 IFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP----LSIEHLFGLVQL 216
+++ + + L L I P + + L
Sbjct: 373 P----DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 217 TLNDCKN-LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275
+ + N ++ + AI L+ + + F ++ +
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 276 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG---------CCKLENVPDTL 326
S L L + L +C N ++P + L L++LN++ + D
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 327 GQVESLEELDISETAVRRPPSSVFL--MKNLRTLSFSGCN--GPPSSASW----HLHLPF 378
++ + + P+S L M L L + + L L +
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604
Query: 379 NLMGKSSCLVALMLPS--LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 436
N + + +P + + L S L + +++ + + S N
Sbjct: 605 NQIEE--------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 437 VTLPASINS------LLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ +I+ +N + + + + + P + S + T+
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNE----IQKFPTELF----ATGSPISTI 702
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 53/477 (11%), Positives = 143/477 (29%), Gaps = 72/477 (15%)
Query: 41 FSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSR 99
S + + + ++ ++ +S K + + + + +L K+ S
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459
Query: 100 IEELWKGIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHN 158
+ + +++ ++ +L ++ L C + ++ L
Sbjct: 460 FTYDNIAVDWEDAN----SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL---Y 512
Query: 159 KLIFVESLKILILSG---------CLKLRKFPHVVGSMECLQELLLDGTDIKELP--LSI 207
L L+ L ++ + + +Q + +++E P S+
Sbjct: 513 DL---PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569
Query: 208 EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNL 266
+ + L L K + L A + L +LKL ++++ P + + L
Sbjct: 570 QKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGF 626
Query: 267 DGTSITEVPSSIEL--LPGLELLNLNDCKNFARVPSSING------LKSLKTLNLSGCCK 318
+ +P+ + + ++ + +I+ + T+ LS +
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYN-E 684
Query: 319 LENVP-DTLGQVESLEELDIS--------ETAVRRPPSSVFLMKNLRTLSFSGCN---GP 366
++ P + + + +S E +++ + L T+
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744
Query: 367 PSSASW------HLHLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGE-----G 414
+ ++ + +N P L + E
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSS--------FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 415 AIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQF-LPQLPPNI 470
P+ I SL +L + N+ + + L L++ D + + + P I
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 5e-21
Identities = 35/286 (12%), Positives = 83/286 (29%), Gaps = 38/286 (13%)
Query: 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280
V + + + L L+G + P + + +L L+ S T
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 281 --LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338
L ++ + L +L + P+ + ++ + +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPE-MKPIKKDSRISLK 426
Query: 339 ET-------AVRRPPSSVFLMKNLRTLSFSGCN---GPPSSASWHLHLPFNLMGKSSCLV 388
+T + ++ + L+ + F+ + + +
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK------QY 480
Query: 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT---------- 438
S S L+ LT ++L +C +P + +L L L ++ N ++
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 439 LPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
L ++ ++ M L + P + K L L
Sbjct: 540 LADDEDTGPKIQIFYMGYNN----LEEFPASASLQK---MVKLGLL 578
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 8e-21
Identities = 61/435 (14%), Positives = 131/435 (30%), Gaps = 95/435 (21%)
Query: 40 AFSLMTNLGLLKINNVQL----------LEGLEYL---SNKLRLLDWHRYPLKSLPSNL- 85
++S + +L +++ N L L+ L N+ + L +
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 86 QLDKIVEFKMCYSRIEEL--WKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLE 142
KI F M Y+ +EE ++ + L ++ H N ++ F L +L L+
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH--NKVRHLEAFGTNVKLTDLKLD 603
Query: 143 GCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV--GSMECLQELLLDGTDI 200
++ ++ ++ L S KL+ P++ S+ + + I
Sbjct: 604 YN-QIEEIPEDFCAFTD-----QVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTME 259
+I + + LS +++KFP ++ T
Sbjct: 657 GSEGRNISCSMDDYKGIN------------------ASTVTLSYN-EIQKFPTELFATGS 697
Query: 260 DLSELNLDGTSITEVPS--------SIELLPGLELLNLNDCKNFARVPSSI--NGLKSLK 309
+S + L +T +P + + L ++L K + L L
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLS 756
Query: 310 TLNLSGCCKLENVPDTLGQVESLEELDISETA-------VRRPPSSVFLMKNLRTLSFSG 362
+++S + P L+ I +R+ P+ + +L L
Sbjct: 757 NMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 363 CNGPPSSASWHL-HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421
+ + + L L LD++D + S
Sbjct: 816 ND---------IRKVDEKL-----------------TPQLYILDIADNPNISIDVTSVCP 849
Query: 422 NLHS-LNELYLSKNN 435
+ + + L K
Sbjct: 850 YIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 29/230 (12%)
Query: 265 NLDGTSITEVPSSIELLPGLELLNLND--CKNFARVPSSINGLKSLKTLNLSGCCKLENV 322
LDG + +I N N + ++ + L+L+G V
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339
Query: 323 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMG 382
PD +GQ+ L+ L + + +S + +
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 383 KSSCLVALM--LPSLSGLRSLTKLDLSDCGLGE-----GAIPSDIGNLHSLNELYLSKNN 435
S L + P + ++ +++ L D +G I I L L +Y + +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459
Query: 436 FVTL--------------------PASINSLLNLKELEMEDCKRLQFLPQ 465
F S ++L +L ++E+ +C + LP
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 9e-33
Identities = 68/479 (14%), Positives = 150/479 (31%), Gaps = 66/479 (13%)
Query: 36 LSAKAFSLMTNLGLLKINNVQLLE-GLEYLSNKLRLLDWHRYPLKSLPSNLQLD-KIVEF 93
+SA + + E S+ ++ KS+ + ++ K +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188
Query: 94 KMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPS 153
+ I + K + L L+ + + + + EA E ++
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGN--SPFVAENICEAWENENSEY-----AQQYKTE 241
Query: 154 LLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
L + L + L + + C L K P + ++ +Q + + + L
Sbjct: 242 DLKWDNL---KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 214 VQLTLNDCKNLSSL------------PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL 261
+ + + + ++ + L L+ +L+ + L
Sbjct: 299 ADAPV--GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKL 355
Query: 262 SELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSG--- 315
+ LNL ITE+P++ +E L+ K +P+ + + ++ S
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 316 ----CCKLENVPDTLGQVESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSA 370
+ + T + ++ +++S + + P +F L +++ G
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM------ 468
Query: 371 SWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI--GNLHSLNE 428
L + + LT +DL L + + D L L
Sbjct: 469 ---------LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVG 517
Query: 429 LYLSKNNFVTLPASINSLLNLKELEMEDCKRL---QFLPQLPPNIIFVKVNGCSSLVTL 484
+ LS N+F P + LK + + + + L + P I C SL L
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-----TLCPSLTQL 571
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 33/328 (10%), Positives = 87/328 (26%), Gaps = 35/328 (10%)
Query: 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLD-----GTDIKELPLSIEHLFGLVQLTLN 219
+ L L G + P +G + L+ L L + P I Q
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 220 DCKNLSSLPVAISSFQC--LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277
+ L ++ + K + +++ +IT V +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI 337
+ L L + + A ++ + + ++ L ++++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEV 256
Query: 338 SETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS 396
P+ + + ++ ++ + G + + L
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRG--------ISGEQLKDDWQA------LADAP 302
Query: 397 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 456
+ + + L + + + + L L N + S + L L +
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362
Query: 457 CKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ + ++P N + L
Sbjct: 363 NQ----ITEIPANFC----GFTEQVENL 382
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-28
Identities = 61/479 (12%), Positives = 146/479 (30%), Gaps = 61/479 (12%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEF 93
+ + FS + + + ++ ++ K + + + + +L K+ +F
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQF 211
Query: 94 KMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHP 152
M S + +++ + +L ++ + C L K+
Sbjct: 212 YMGNSPFV----AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267
Query: 153 SL-LLHN-KLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL--SIE 208
L L +LI V + + + E +Q + + ++K P+ S++
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327
Query: 209 HLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLD 267
+ L L L A S L +L L+ ++ + P E + L+
Sbjct: 328 KMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFA 385
Query: 268 GTSITEVPSSIEL--LPGLELLNLN-------DCKNFARVPSSINGLKSLKTLNLSGCCK 318
+ +P+ + + + ++ + D KNF + + ++ ++NLS +
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-Q 444
Query: 319 LENVP-DTLGQVESLEELDISE--------TAVRRPPSSVFLMKNLRTLSFSGCN---GP 366
+ P + L +++ +++ + L ++
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504
Query: 367 PSSASWHL--------------HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412
+ L P L +L G + D
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQP---------LNSSTLKGFGIRNQRDAQGNRT- 554
Query: 413 EGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNII 471
P I SL +L + N+ + I N+ L+++D + I
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 2e-21
Identities = 27/253 (10%), Positives = 73/253 (28%), Gaps = 19/253 (7%)
Query: 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD-----GTSITEVP 275
+ V+++S + L L G + P + + +L L L P
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 276 SSIELLPGLELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPDTLGQVESLE 333
I E L ++ + +++ +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCN---GPPSSASWHLHLPFNLMGKSSCLVAL 390
++ + +V + LR A + + + K+
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT------ 240
Query: 391 MLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLK 450
L+ LT +++ +C +P+ + L + + ++ N ++ + L
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 451 ELEMEDCKRLQFL 463
+ + +++Q +
Sbjct: 300 DAPV--GEKIQII 310
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 7e-13
Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 40/267 (14%)
Query: 78 LKSLPSNL--QLDKIVEFKMCYSRIEEL--WKGIKHLNMLKVMKLSHSENLIKT------ 127
+ +P+N +++ +++++ + K ++++ + S+ N I +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY--NEIGSVDGKNF 422
Query: 128 ----PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGC-------LK 176
P + N+ + L ++ K L L + L G
Sbjct: 423 DPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGS-----PLSSINLMGNMLTEIPKNS 476
Query: 177 LRKFPHVVGSMECLQELLLDGTDIKELPLSIE--HLFGLVQLTLNDCKNLSSLPVAISSF 234
L+ + L + L + +L L LV + L+ + S P +
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNS 535
Query: 235 QCLR------NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLN 288
L+ G L+++P+ +T L++L + I +V I P + +L+
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLD 593
Query: 289 LNDCKNFARVPSSINGLKSLKTLNLSG 315
+ D N + S + L
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFY 620
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 31/194 (15%)
Query: 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-----PSSVFLMKNL 355
S+N + L+L G VPD +GQ+ LE L + + P + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 356 RTLSFSGCNGPPSSASWHLHLPF----NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 411
+ + + F S + S T++ +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 412 GEGAIPSDIGNLHSLNELYLSKNNFV--------------------TLPASINSLLNLKE 451
+ + L L + Y+ + FV T ++L +L +
Sbjct: 196 TF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 452 LEMEDCKRLQFLPQ 465
+E+ +C L LP
Sbjct: 254 VEVYNCPNLTKLPT 267
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 93/453 (20%), Positives = 152/453 (33%), Gaps = 54/453 (11%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQL----------LEGLEYL---SNKLRLLDWHRYPLKSL 81
++ A S L L + + LE L SN + + L
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--------L 146
Query: 82 PSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKT--PDFTEAPNLEE 138
P +K+ + I L K + L + L+ + N I P ++ +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206
Query: 139 LYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC---LQELLL 195
L G + V L ++ + +SL + + V C ++ + L
Sbjct: 207 LNFGGT-QNLLVIFKGLKNSTI---QSLWLGTFED-MDDEDISPAVFEGLCEMSVESINL 261
Query: 196 DGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQI 254
+ + GL +L L +LS LP + L+ L LS K + QI
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQI 319
Query: 255 V-TTMEDLSELNLDGTSI--TEVPSSIELLPGLELLNL--NDCKNFARVPSSINGLKSLK 309
+ L+ L++ G + +E L L L+L +D + + L L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379
Query: 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFL-MKNLRTLSFSGCNGPP 367
+LNLS L + + LE LD++ T ++ S F + L+ L+ S
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
Query: 368 SSASW--------HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419
SS HL+L N SL L L L LS C L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHF---PKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHA 495
Query: 420 IGNLHSLNELYLSKNNFVTLPASINSLLNLKEL 452
+L +N + LS N + S L L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-28
Identities = 83/469 (17%), Positives = 144/469 (30%), Gaps = 53/469 (11%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLL----EGLEYLSNKLRLLDWHRYPLKSLPSNL--QLD 88
+ FS + NL L + Q+ + + L L PL +
Sbjct: 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPK 105
Query: 89 KIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKT---PDFTEAPNLEELYLEGC 144
+ + I + + + L+ + L N I + P L+ L +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS--NHISSIKLPKGFPTEKLKVLDFQNN 163
Query: 145 TKLRKVHPSLLLHNKLIFVESLKILILS-GCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
+ + + ++ L L+ + Q L GT +
Sbjct: 164 -AIHYLSKEDMSS-----LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 204 P---LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC--LRNLKLSGCSKLKKFPQIVTTM 258
L + L T D + P + ++ L
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGCC 317
L EL+L T ++E+PS + L L+ L L+ K F + S + SL L++ G
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNT 336
Query: 318 KLENV-PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHL 376
K + L +E+L ELD+S + ++NL L L+L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ-------------SLNL 383
Query: 377 PFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 436
+N ++L + L LDL+ L S NLH L L LS +
Sbjct: 384 SYN------EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 437 VTLPASI-NSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ + L L+ L ++ N + L L
Sbjct: 438 DISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSL----QTLGRLEIL 481
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 68/388 (17%), Positives = 129/388 (33%), Gaps = 47/388 (12%)
Query: 121 SENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL 177
S N++ T F+ NL L L C ++ +H L L+L+ L
Sbjct: 41 SFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQH-----RLDTLVLTAN-PL 93
Query: 178 RKFP-HVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPV-AISSF 234
+ + L+ L T I + + + + L L L ++SS+ +
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPT 152
Query: 235 QCLRNLKLSGCSKLKKF-PQIVTTMEDLS--ELNLDGTSITEVPSSIELLPGLELLNLND 291
+ L+ L + + +++++ + LNL+G I + + LN
Sbjct: 153 EKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 292 CKNFARVPSSI--NGLKSLKTLNLSGCCKLENVPDTLGQVE--SLEELDISETAVRRPPS 347
+N + + + ++SL + P + S+E +++ + S
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 348 SVFL-MKNLRTLSFSGCN--GPPSSASW-----HLHLPFNLMGKSSCLVALMLPSLSGLR 399
+ F L+ L + + PS L L N + S S
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI------SASNFP 325
Query: 400 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA---SINSLLNLKELEMED 456
SLT L + + NL +L EL LS ++ T + +L +L+ L +
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 457 CKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ L C L L
Sbjct: 386 NE----PLSLKTEAF----KECPQLELL 405
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 76/453 (16%), Positives = 153/453 (33%), Gaps = 63/453 (13%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQL----LEGLEYLSNKLRLLDWHRYPLKSLP----SNLQ 86
+ L L + + + L L++LD+ + L S+LQ
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQ 177
Query: 87 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP---DFTEAPNLEELYLEG 143
+ + + I + G + + + ++NL+ + +L E
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237
Query: 144 CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
+ P++ + S++ + L + LQEL L T + EL
Sbjct: 238 M-DDEDISPAVFEGLCEM---SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 204 PLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKK-FPQIVTTMEDL 261
P + L L +L L+ K +L ++ S+F L +L + G +K + + +E+L
Sbjct: 294 PSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 262 SELNLDGTSITEVPSSIEL---LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
EL+L I L L+ LNL+ + + + L+ L+L+ +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-R 411
Query: 319 LENVPD--TLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLH 375
L+ + L+ L++S + + +F + L+ L+ G +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF-----PKGNI 466
Query: 376 LPFNLMGKSSCLVALML----------PSLSGLRSLTKLDLSD---CGLGEGA------- 415
N + L L+L + + L+ + +DLS A
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526
Query: 416 ------------IPSDIGNLHSLNELYLSKNNF 436
+PS + L + L +N
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 8e-15
Identities = 30/213 (14%), Positives = 61/213 (28%), Gaps = 31/213 (14%)
Query: 259 EDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGC 316
L + + ++ L L L+L C + + L TL L+
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTA- 90
Query: 317 CKLENVPD-TLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHL 374
L + + L ++L+ L +T + K L +L +
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH---------- 140
Query: 375 HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL--S 432
+ ++ LP L LD + + D+ +L L L +
Sbjct: 141 ------------ISSIKLPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLN 187
Query: 433 KNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465
N+ + + L + L + +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 65/383 (16%), Positives = 139/383 (36%), Gaps = 50/383 (13%)
Query: 77 PLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPN 135
P+ + + L + + + + + ++ + L + + ++ + + N
Sbjct: 11 PINQIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAG--EKVASIQGIEYLTN 67
Query: 136 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLL 195
LE L L G ++ + P L L L + K+ + ++ L+EL L
Sbjct: 68 LEYLNLNGN-QITDISPLSNLVK-------LTNLYIGTN-KITDIS-ALQNLTNLRELYL 117
Query: 196 DGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV 255
+ +I ++ + +L + L L + S +S+ L L ++ K+K I
Sbjct: 118 NEDNISDIS-PLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTES-KVKDVTPI- 173
Query: 256 TTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315
+ DL L+L+ I ++ S + L L N + + + L +L +
Sbjct: 174 ANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAY--VNQITDITPVANMTRLNSLKIGN 230
Query: 316 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375
K+ ++ L + L L+I + + V + L+ L+
Sbjct: 231 N-KITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGS------------- 274
Query: 376 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435
N + + L+ L L L L++ L IG L +L L+LS+N+
Sbjct: 275 ---NQISD--------ISVLNNLSQLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQNH 322
Query: 436 FVTLPASINSLLNLKELEMEDCK 458
+ + SL + + +
Sbjct: 323 ITDIRP-LASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 3e-20
Identities = 55/324 (16%), Positives = 126/324 (38%), Gaps = 32/324 (9%)
Query: 39 KAFSLMTNLGLLKI--NNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMC 96
+ ++ L + V ++G+EYL+N L L+ + + + L K+ +
Sbjct: 38 VTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIG 96
Query: 97 YSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHP--- 152
++I ++ +++L L+ + L+ + I + L L L + P
Sbjct: 97 TNKITDI-SALQNLTNLRELYLNE--DNISDISPLANLTKMYSLNLGANHNLSDLSPLSN 153
Query: 153 --SL----LLHNKLIFVE------SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200
L + +K+ V L L L+ ++ + S+ L I
Sbjct: 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISPL-ASLTSLHYFTAYVNQI 211
Query: 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260
++ + ++ L L + + K ++ L +++ L L++ ++ + +
Sbjct: 212 TDIT-PVANMTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTN-QISDINAV-KDLTK 266
Query: 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320
L LN+ I+++ S + L L L LN+ + I GL +L TL LS +
Sbjct: 267 LKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ-NHIT 324
Query: 321 NVPDTLGQVESLEELDISETAVRR 344
++ L + ++ D + +++
Sbjct: 325 DIRP-LASLSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 7e-16
Identities = 29/198 (14%), Positives = 69/198 (34%), Gaps = 33/198 (16%)
Query: 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320
+ L I ++ L L K + L+S+ L ++G K+
Sbjct: 2 AATLATLPAPINQI-FPDADLAEGIRAVLQ--KASVTDVVTQEELESITKLVVAGE-KVA 57
Query: 321 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380
++ + + +LE L+++ + + + L L
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK---------------- 99
Query: 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440
+ +L L +L +L L++ + + S + NL + L L N+ ++
Sbjct: 100 --------ITDISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDL 148
Query: 441 ASINSLLNLKELEMEDCK 458
+ ++++ L L + + K
Sbjct: 149 SPLSNMTGLNYLTVTESK 166
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 70/432 (16%), Positives = 160/432 (37%), Gaps = 56/432 (12%)
Query: 45 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW 104
+ + + + + L+ + + S LD++ + I+ +
Sbjct: 4 GSATITQDTPINQIFTDTALAE-KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI- 61
Query: 105 KGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYL-----------EGCTKLRKVHP 152
G+++LN L + S+ N + L ++ + T L +
Sbjct: 62 DGVEYLNNLTQINFSN--NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT- 118
Query: 153 SLLLHNKLIFVE------SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 206
L +N++ ++ +L L LS + + + LQ+L PL+
Sbjct: 119 --LFNNQITDIDPLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQVTDLKPLA 174
Query: 207 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266
+L L +L ++ K +S + ++ L +L + ++ + + +L EL+L
Sbjct: 175 --NLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNN-QISDITPL-GILTNLDELSL 228
Query: 267 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 326
+G + ++ + + L L L+L + N + ++GL L L L ++ N+ L
Sbjct: 229 NGNQLKDIGT-LASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGAN-QISNISP-L 283
Query: 327 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN--GPPSSASWH----LHLPFNL 380
+ +L L+++E + L KNL L+ N +S L N
Sbjct: 284 AGLTALTNLELNENQLEDISPISNL-KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342
Query: 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440
+ + SL+ L ++ L + + + + NL + +L L+ + P
Sbjct: 343 VSD--------VSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAP 391
Query: 441 ASINSLLNLKEL 452
+ + +++
Sbjct: 392 VNYKANVSIPNT 403
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 68/355 (19%), Positives = 147/355 (41%), Gaps = 41/355 (11%)
Query: 111 NMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169
+ + MK + + T T+ + L + ++ + L+N L +
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL-GIKSIDGVEYLNN-------LTQI 73
Query: 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV 229
S +L + ++ L ++L++ I ++ + +L L LTL + + ++ +
Sbjct: 74 NFSNN-QLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ-ITDID- 128
Query: 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 289
+ + L L+LS + + + + L +L+ G +T+ + L LE L++
Sbjct: 129 PLKNLTNLNRLELSSN-TISDISAL-SGLTSLQQLSF-GNQVTD-LKPLANLTTLERLDI 184
Query: 290 NDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 349
+ K S + L +L++L + ++ ++ LG + +L+EL ++ ++ ++
Sbjct: 185 SSNKV--SDISVLAKLTNLESLIATN-NQISDITP-LGILTNLDELSLNGNQLKDIG-TL 239
Query: 350 FLMKNLRTLSFSGCN--GPPSSASW----HLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 403
+ NL L + + L L N + + L+GL +LT
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--------ISPLAGLTALTN 291
Query: 404 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458
L+L++ L + S I NL +L L L NN + ++SL L+ L + K
Sbjct: 292 LELNENQLED---ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 55/310 (17%), Positives = 118/310 (38%), Gaps = 41/310 (13%)
Query: 40 AFSLMTNLGLLKI-NNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYS 98
A S +T+L L N V L+ L L+ L LD + + +L + +
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNKVSDISVLAKLTNLESLIATNN 209
Query: 99 RIEELWKGIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL-----------EGCTK 146
+I ++ + L L + L+ N +K NL +L L G TK
Sbjct: 210 QISDI-TPLGILTNLDELSLNG--NQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266
Query: 147 LRKVHPSLLLHNKLIFVE------SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200
L ++ L N++ + +L L L+ +L + +++ L L L +I
Sbjct: 267 LTELK---LGANQISNISPLAGLTALTNLELNEN-QLEDISPI-SNLKNLTYLTLYFNNI 321
Query: 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260
++ + L L +L + K +S + ++++ + L ++ + +
Sbjct: 322 SDIS-PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHN-QISDLTPL-ANLTR 376
Query: 261 LSELNLDGTSITEVPSSIELLPGLELLNL-NDCKNFARVPSSINGLKSLKTLNLSGCCKL 319
+++L L+ + T P + + + N + P++I+ S +++
Sbjct: 377 ITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW---- 430
Query: 320 ENVPDTLGQV 329
N+P +V
Sbjct: 431 -NLPSYTNEV 439
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 92/481 (19%), Positives = 151/481 (31%), Gaps = 82/481 (17%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLE------GLEYLSNKLRLLDWHRYPLKSLP----SN 84
S F + L L +NNVQL LE + +R L L +
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 85 LQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPD---FTEAPNLEELY 140
L+ + + Y+ + + L L+ L + N I+ N+ L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY--NNIQHLFSHSLHGLFNVRYLN 302
Query: 141 LEG--------CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 192
L+ L K+ K L+ L + ++ + L+
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLK-----CLEHLNMEDNDIPGIKSNMFTGLINLKY 357
Query: 193 LLLDGTDIKELPLSIEHLFGLVQ-----LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247
L L + L+ E L L L K A S L L L +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-E 416
Query: 248 LKKF--PQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNL--NDCKNFARVPSSI 302
+ + Q +E++ E+ L ++ +S L+P L+ L L KN PS
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 303 NGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDIS---------ETAVRRPPSSVFLM 352
L++L L+LS + N+ D L +E LE LD+ P + +
Sbjct: 477 QPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 353 KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412
+L L+ + + L L +DL L
Sbjct: 536 SHLHILNLESNG----------------------FDEIPVEVFKDLFELKIIDLGLNNL- 572
Query: 413 EGAIPSDIGNLHSLNELYLSKNNFVTLPASI--NSLLNLKELEME------DCKRLQFLP 464
S N SL L L KN ++ + + NL EL+M C+ + +
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632
Query: 465 Q 465
Sbjct: 633 N 633
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-26
Identities = 86/412 (20%), Positives = 147/412 (35%), Gaps = 53/412 (12%)
Query: 107 IKHLNMLKVMKLSHSENLIKTPD---FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV 163
L + L N I+ F + NL L L L + +
Sbjct: 93 FAFCTNLTELHLMS--NSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLE---- 145
Query: 164 ESLKILILSGCLKLRKFPHVVGSMEC---LQELLLDGTDIKEL-PLSIEHLFGLVQLTLN 219
+L+ L+LS K++ + L++L L IKE P + L L LN
Sbjct: 146 -NLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 220 DCKNLSSLPVAISSFQC---LRNLKLSGCSKLKKFPQIV---TTMEDLSELNLDGTSITE 273
+ + SL + +RNL LS L +L+ L+L ++
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262
Query: 274 V-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG--------CCKLENVPD 324
V S LP LE L S++GL +++ LNL L + D
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 325 -TLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSG----CNGPPSSASWHLHLPF 378
+ ++ LE L++ + + S++F + NL+ LS S + L
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382
Query: 379 ----NLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433
NL + ++ + + S L L LDL +G+ + L ++ E+YLS
Sbjct: 383 LHILNL---TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 434 NNFVTL-PASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
N ++ L S + +L+ L + L+ + P +L L
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPF-----QPLRNLTIL 485
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 85/472 (18%), Positives = 158/472 (33%), Gaps = 71/472 (15%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQL----------LEGLEYL---SNKLRLLDWHRYPLKSL 81
+ F NL L +++ L LE L+ L +NK++ L
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK------SEE 164
Query: 82 PSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSH----SENLIKTPDFTEAPNL 136
+ + ++ ++I+E G + L + L++ K ++
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 137 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF-PHVVGSMECLQELLL 195
L L +L + L K +L +L LS L + L+ L
Sbjct: 225 RNLSLSNS-QLSTTSNTTFLGLKWT---NLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFL 279
Query: 196 DGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKF--- 251
+ +I+ L S+ LF + L L + + ++++S + + L+
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337
Query: 252 --------PQIVTTMEDLSELNLDG--TSITEVPSSI---ELLPGLELLNLNDCKNFARV 298
+ T + +L L+L TS+ + + L +LNL K
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 299 PSSINGLKSLKTLNLSGCCKLENV--PDTLGQVESLEELDISETAVRRPPSSVFL-MKNL 355
+ + L L+ L+L ++ +E++ E+ +S + + F + +L
Sbjct: 398 SDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456
Query: 356 RTLSFSGCN--GPPSSASWHLHLP----FNLMGKSSC-LVALMLPSLSGLRSLTKLDLSD 408
+ L SS S L +L S+ + + L GL L LDL
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDL---SNNNIANINDDMLEGLEKLEILDLQH 513
Query: 409 CGL-------GEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKEL 452
L G + L L+ L L N F +P L LK +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 1e-19
Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 39/258 (15%)
Query: 235 QCLRNLKLSGCS--KLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLND 291
+C + +++ CS KL + P + T +++ LNL + + ++ L L++
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 292 CKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVF 350
P L LK LNL +L + T +L EL + ++++ ++ F
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
Query: 351 L-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409
+ KNL TL S L + L + L +L +L LS+
Sbjct: 118 VKQKNLITLDLSHNG----------------------LSSTKLGTQVQLENLQELLLSNN 155
Query: 410 GLGEGAIPSDIGNLH--SLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQL 466
+ + ++ SL +L LS N P +++ L L + + + L
Sbjct: 156 KI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ----LGPS 210
Query: 467 PPNIIFVKVNGCSSLVTL 484
+ +++ +S+ L
Sbjct: 211 LTEKLCLELAN-TSIRNL 227
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 92/466 (19%), Positives = 154/466 (33%), Gaps = 72/466 (15%)
Query: 35 HLSAKAFSLMTNLGLL-----KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDK 89
L + L L I + +L E L+N L LD ++S+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYC------ 166
Query: 90 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT--PDFTEAPNLEELYLEGCTKL 147
+ + + +L + L S N + P + L +L L
Sbjct: 167 ------------TDLRVLHQMPLLN-LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213
Query: 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELPLS 206
V + + + V L + L KF + + L +
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 207 IEHLF-GLVQLTLNDCKN--LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
I LF L ++ + + + S ++L+L C +FP + ++ L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK-FGQFPTL--KLKSLKR 329
Query: 264 LNLDGTSITEVPSSIELLPGLELLNL--NDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 321
L S ++L P LE L+L N S G SLK L+LS +
Sbjct: 330 LTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 387
Query: 322 VPDTLGQVESLEELDISETAVRR-PPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFN 379
+ +E LE LD + +++ SVFL ++NL L S +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------------- 432
Query: 380 LMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 439
+GL SL L ++ E +P L +L L LS+ L
Sbjct: 433 -------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 440 PASI-NSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ NSL +L+ L M + L +P I + +SL +
Sbjct: 486 SPTAFNSLSSLQVLNMASNQ----LKSVPDGIF----DRLTSLQKI 523
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-20
Identities = 80/419 (19%), Positives = 139/419 (33%), Gaps = 69/419 (16%)
Query: 113 LKVMKLSHSENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSL-----------LLHN 158
K + LS N ++ F P L+ L L C +++ + L N
Sbjct: 30 TKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86
Query: 159 KLIFVE--------SLKILILSGCLKLRKFPHVV-GSMECLQELLLDGTDIKELPL--SI 207
+ + SL+ L+ L + G ++ L+EL + I+ L
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 208 EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS------KLKKFPQIVTTMEDL 261
+L L L L+ K + S+ + + L + L S + L
Sbjct: 146 SNLTNLEHLDLSSNK-IQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 262 SELNLDG--TSITEVPSSIELLPGLELLNL-----NDCKNFARVPSSI-NGLKSLKTLNL 313
+L L S+ + + I+ L GLE+ L + N + S GL +L
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 314 SGC---CKLENVPDTLGQVESLEELDISETAVRRPPSSVFL--MKNLRTLSFSGCNGPPS 368
L+++ D + ++ + + R + ++L ++ P
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
Query: 369 SASW--HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHS 425
L N G S L SL LDLS GL S S
Sbjct: 323 KLKSLKRLTFTSNKGGN--------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 426 LNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
L L LS N +T+ ++ L L+ L+ + L Q+ +F +L+ L
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN----LKQMSEFSVF---LSLRNLIYL 426
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 57/305 (18%), Positives = 110/305 (36%), Gaps = 32/305 (10%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQ-LDKIVEF 93
L F NL + ++ L L +L LD++ + L + L +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 94 KMCYSRIEEL--WKGIKHLNMLKVM-------------KLSHSENLIKT-PDFTEAPNLE 137
+ R+++ G +HL ++ +L+ + N + P+LE
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Query: 138 ELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197
L L L SLK L LS + +E L+ L
Sbjct: 351 FLDLSRN-GLSFKGCCSQSDFGT---TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH 405
Query: 198 TDIKELPLSI--EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKF--P 252
+++K++ L L+ L ++ + + L LK++G ++ P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLP 463
Query: 253 QIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKT 310
I T + +L+ L+L + ++ + L L++LN+ + VP I + L SL+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQK 522
Query: 311 LNLSG 315
+ L
Sbjct: 523 IWLHT 527
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 32/215 (14%)
Query: 259 EDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGC 316
L+L + + S S P L++L+L+ C + + L L TL L+G
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG- 85
Query: 317 CKLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375
++++ + SL++L ET + + +L+TL L+
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTL-------------KELN 130
Query: 376 LPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL----NELY 430
+ N + + LP S L +L LDLS + + +D+ LH + L
Sbjct: 131 VAHN------LIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLD 183
Query: 431 LSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465
LS N + + L +L + + + +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 42/302 (13%)
Query: 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224
+L + L P + + + L++ ++ LP L L ++ + L
Sbjct: 41 GNAVLNVGES-GLTTLPDCLPA--HITTLVIPDNNLTSLPALPPEL---RTLEVSGNQ-L 93
Query: 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 284
+SLPV L + L +L + G +T +P L PGL
Sbjct: 94 TSLPVLPPGLLELSIFSNPLT-------HLPALPSGLCKLWIFGNQLTSLP---VLPPGL 143
Query: 285 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344
+ L+++D + A +P+ + L L N +L ++P L+EL +S+ +
Sbjct: 144 QELSVSDNQ-LASLPALPSELCKLWAYN----NQLTSLPMLPS---GLQELSVSDNQLAS 195
Query: 345 PPSSVFLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 403
P+ + L + + P + L + N + LP L L +
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--------LPVL--PSELKE 245
Query: 404 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463
L +S L +P L SL+ + +N LP S+ L + + +E L
Sbjct: 246 LMVSGNRLTS--LPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGN-PLSER 299
Query: 464 PQ 465
Sbjct: 300 TL 301
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-20
Identities = 66/377 (17%), Positives = 120/377 (31%), Gaps = 46/377 (12%)
Query: 64 LSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 123
L+N +L+ L +LP L I + + + L L L+V S N
Sbjct: 38 LNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPELRTLEV-----SGN 91
Query: 124 LIKT--PDFTEAPNLEELYLEGCTKLRKVHPSL----LLHNKLIFV----ESLKILILSG 173
+ + L T L + L + N+L + L+ L +S
Sbjct: 92 QLTSLPVLPPGLLELSIFSNPL-THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150
Query: 174 CLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISS 233
+L P + L +L + LP+ GL +L+++D + L+SLP S
Sbjct: 151 N-QLASLPALPSE---LCKLWAYNNQLTSLPMLPS---GLQELSVSDNQ-LASLPTLPSE 202
Query: 234 FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293
L L +L P + + L EL + G +T +P L L+ L ++ +
Sbjct: 203 ---LYKLWAYNN-RLTSLPALPSG---LKELIVSGNRLTSLP---VLPSELKELMVSGNR 252
Query: 294 NFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMK 353
+P +GL SL ++ +L +P++L + S +++ +
Sbjct: 253 -LTSLPMLPSGLLSL---SVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307
Query: 354 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSL--SGLRSLTKLDLSDCGL 411
+GP A L + +
Sbjct: 308 TSAPGY----SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363
Query: 412 GEGAIPSDIGNLHSLNE 428
A + L
Sbjct: 364 NADAFSLFLDRLSETEN 380
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 9e-17
Identities = 62/316 (19%), Positives = 106/316 (33%), Gaps = 52/316 (16%)
Query: 42 SLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRI 100
L ++ L I + L LR L+ L SLP L ++ F + +
Sbjct: 58 CLPAHITTLVIPDNNLTSLPALPPE-LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116
Query: 101 EELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSL------ 154
L G+ L + N + + P L+EL + +L +
Sbjct: 117 PALPSGLCKLWI--------FGNQLTSLP-VLPPGLQELSVSDN-QLASLPALPSELCKL 166
Query: 155 -LLHNKLIFV----ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEH 209
+N+L + L+ L +S +L P + L +L + LP
Sbjct: 167 WAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSE---LYKLWAYNNRLTSLPALPS- 221
Query: 210 LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269
GL +L ++ + L+SLPV S L+ L +SG +L P L L++
Sbjct: 222 --GLKELIVSGNR-LTSLPVLPSE---LKELMVSGN-RLTSLPM---LPSGLLSLSVYRN 271
Query: 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329
+T +P S+ L +NL L L ++ + P G +
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNP--------------LSERTLQALREITSAPGYSGPI 317
Query: 330 ESLEELDISETAVRRP 345
+ S R
Sbjct: 318 IRFDMAGASAPRETRA 333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 3e-24
Identities = 55/400 (13%), Positives = 125/400 (31%), Gaps = 56/400 (14%)
Query: 64 LSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSH 120
N+ ++ LK ++L + E + + + ++ + L+++ LS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 121 SENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRK 179
N++ D L L L +N + + L +
Sbjct: 68 --NVLYETLDLESLSTLRTLDLN--------------NNYV---QELLVGPS-------- 100
Query: 180 FPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLR 238
++ L +I + S G + L + K ++ L + ++
Sbjct: 101 ----------IETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQ 147
Query: 239 NLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFA 296
L L +++ F ++ + + L LNL I +V + + L+ L+L+ K A
Sbjct: 148 YLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LA 204
Query: 297 RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR--PPSSVFLMKN 354
+ + ++L KL + L ++LE D+ +
Sbjct: 205 FMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Query: 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE- 413
++T++ +P + C L P L +L + + +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 414 --GAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKE 451
+ + N E+ K + T+ + K
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 47/270 (17%), Positives = 99/270 (36%), Gaps = 38/270 (14%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSK 247
+ + + +K+ S+ + + + +L L+ LS + ++ F L L LS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-V 69
Query: 248 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKS 307
L + + ++ L L+L+ + E+ P +E L+ + N +RV S +
Sbjct: 70 LYETLDL-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSCSR--GQG 121
Query: 308 LKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 366
K + L+ K+ + D G ++ LD+ + + + TL
Sbjct: 122 KKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLE------- 172
Query: 367 PSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 426
HL+L +N + + L LDLS L + + + +
Sbjct: 173 ------HLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGV 216
Query: 427 NELYLSKNNFVTLPASINSLLNLKELEMED 456
+ L N V + ++ NL+ ++
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 4e-16
Identities = 45/286 (15%), Positives = 83/286 (29%), Gaps = 69/286 (24%)
Query: 200 IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTME 259
I E+ + + D +L S Q N+K
Sbjct: 2 IHEIKQ---NGNRYKIEKVTDS-SLKQAL--ASLRQSAWNVK------------------ 37
Query: 260 DLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
EL+L G ++++ + + LELLNL+ N + L +L+TL+L+
Sbjct: 38 ---ELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLDLESLSTLRTLDLNN--- 89
Query: 319 LENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPF 378
N L S+E L + + R S + + + +
Sbjct: 90 --NYVQELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNK-------------- 131
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 438
+ L + LDL + + +L L L N
Sbjct: 132 --------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 439 LPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ + LK L++ K L + P + + +
Sbjct: 184 VKGQVV-FAKLKTLDLSSNK----LAFMGPEF-----QSAAGVTWI 219
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 46/355 (12%), Positives = 98/355 (27%), Gaps = 50/355 (14%)
Query: 40 AFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSR 99
++ L L +NN + E L + + L + + + + ++
Sbjct: 75 DLESLSTLRTLDLNNNYVQE-LLVGPS-IETLHAANNNISRVSCSR-GQGKKNIYLANNK 131
Query: 100 IEELWKG-IKHLNMLKVMKLSHSENLIKTPD----FTEAPNLEELYLEGCTKLRKVHPSL 154
I L + ++ + L N I T + + LE L L+ + V +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV 188
Query: 155 LLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLV 214
+ LK L LS KL S + + L + + ++ L
Sbjct: 189 VFAK-------LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 215 QLTLND------------CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ--------- 253
L KN VA + + L C+
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 254 -------IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 306
I ++ + L+ G+ + E ++ + + +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 307 SLKTLNLSGCCKLENVPDTLGQVESLEEL---DISETAVRRPPSSVFLMKNLRTL 358
+ TL E V + L+ + + ++ ++ LR +
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 77/413 (18%), Positives = 140/413 (33%), Gaps = 76/413 (18%)
Query: 42 SLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE 101
L +L L ++N L + L L L L L+ LP + + + ++
Sbjct: 108 ELPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166
Query: 102 ELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL 160
+L L + N ++ P+ P L +Y + L+K+ L
Sbjct: 167 KLPDLPPSLEFIAA-----GNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPL----- 215
Query: 161 IFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLND 220
SL+ ++ L + P + ++ L + D +K LP L L + D
Sbjct: 216 ----SLESIVAGNN-ILEELPEL-QNLPFLTTIYADNNLLKTLPDLPPSL---EALNVRD 266
Query: 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280
L+ LP S L L +S F + +L LN I + +L
Sbjct: 267 NY-LTDLPELPQS---LTFLDVSENI----FSGLSELPPNLYYLNASSNEIRSLC---DL 315
Query: 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340
P LE LN+++ K +P+ L+ L S L VP+ +L++L +
Sbjct: 316 PPSLEELNVSNNK-LIELPALP---PRLERLIASFN-HLAEVPELPQ---NLKQLHVEYN 367
Query: 341 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 400
+R P +++LR S +P L ++
Sbjct: 368 PLREFPDIPESVEDLRMNSHLA----------------------------EVPEL--PQN 397
Query: 401 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
L +L + L E P ++ +L ++ V + + E +
Sbjct: 398 LKQLHVETNPLRE--FPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDD 445
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 80/460 (17%), Positives = 152/460 (33%), Gaps = 77/460 (16%)
Query: 32 NEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIV 91
E + + + G + + + + L + L+ + L SLP +
Sbjct: 37 TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP--HLE 94
Query: 92 EFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVH 151
+ + EL + + L L V + L P P LE L + +L K+
Sbjct: 95 SLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLP-----PLLEYLGVSNN-QLEKLP 147
Query: 152 PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 211
LKI+ + L+K P + S L+ + ++ELP +++L
Sbjct: 148 ELQNSSF-------LKIIDVDNN-SLKKLPDLPPS---LEFIAAGNNQLEELP-ELQNLP 195
Query: 212 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI 271
L + ++ L LP S L ++ L++ P++ + L+ + D +
Sbjct: 196 FLTAIYADNNS-LKKLPDLPLS---LESIVAGNN-ILEELPEL-QNLPFLTTIYADNNLL 249
Query: 272 TEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES 331
+P +L P LE LN+ D +P L L + + +
Sbjct: 250 KTLP---DLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENI----FSGLSELPP---N 298
Query: 332 LEELDISETAVRRPPSSVFLMKNLRTLSFSGCN---GPPSSAS-WHLHLPFNLMGKSSCL 387
L L+ S +R L +L L+ S P L FN + +
Sbjct: 299 LYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE---- 351
Query: 388 VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN----------------ELYL 431
+P L ++L +L + L E P ++ L +L++
Sbjct: 352 ----VPEL--PQNLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403
Query: 432 SKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNII 471
N P S+ +L+ +R+ +
Sbjct: 404 ETNPLREFPDIPESVEDLRMN----SERVVDPYEFAHETT 439
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 84/417 (20%), Positives = 138/417 (33%), Gaps = 59/417 (14%)
Query: 118 LSHSENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE-------SLKIL 169
L HS NL + P + E Y R P ++ L
Sbjct: 17 LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76
Query: 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV 229
L+ L P + L+ L+ + ELP + L L+ N LS LP
Sbjct: 77 ELNNL-GLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLP- 130
Query: 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 289
L L +S +L+K P++ L +++D S+ ++P +L P LE +
Sbjct: 131 -----PLLEYLGVSNN-QLEKLPEL-QNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAA 180
Query: 290 NDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 349
+ N + L L + L+ +PD SLE + + P +
Sbjct: 181 GN--NQLEELPELQNLPFLTAIYADNN-SLKKLPDLPL---SLESIVAGNNILEELPE-L 233
Query: 350 FLMKNLRTLSFSGCNG---PPSSASW-HLHLPFN----LMGKSSCLVALMLPSLSG---- 397
+ L T+ P S L++ N L L L +
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293
Query: 398 --LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEME 455
+L L+ S + + +L LN +S N + LPA L+ L
Sbjct: 294 ELPPNLYYLNASSNEIRS--LCDLPPSLEELN---VSNNKLIELPALPP---RLERLIAS 345
Query: 456 DCKRLQFLPQLPPNIIFVKVNGC-----SSLVTLLGALKLCKSNGIVIECIDSLKLL 507
L +P+LP N+ + V + + L++ V E +LK L
Sbjct: 346 FN-HLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 62/325 (19%), Positives = 115/325 (35%), Gaps = 44/325 (13%)
Query: 186 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245
S LQE L +++ E+P+ E++ + + + P + + +L C
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305
+ EL L+ ++ +P P LE L C + +P L
Sbjct: 69 LDRQ-----------AHELELNNLGLSSLPELP---PHLESLVA-SCNSLTELPELPQSL 113
Query: 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN- 364
KSL N + L ++P LE L +S + + P + L+ + +
Sbjct: 114 KSLLVDNNN-LKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL 165
Query: 365 -GPPSSAS--WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421
P + N + + LP L L LT + + L + +P
Sbjct: 166 KKLPDLPPSLEFIAAGNNQLEE--------LPELQNLPFLTAIYADNNSLKK--LPDLPL 215
Query: 422 NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKV--NGCS 479
+L + N LP + +L L + ++ L+ LP LPP++ + V N +
Sbjct: 216 SLE---SIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLT 270
Query: 480 SLVTLLGALKLCKSNGIVIECIDSL 504
L L +L + + + L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSEL 295
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 36/285 (12%)
Query: 41 FSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRI 100
+ L + +N L + L L L + L+ LP L + + +
Sbjct: 191 LQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 249
Query: 101 EELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC--TKLRKVHPSL---- 154
+ L L L+ +N + +L L + + L ++ P+L
Sbjct: 250 KTLPDLPPSLE-----ALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLN 303
Query: 155 LLHNKLI----FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHL 210
N++ SL+ L +S KL + P + L+ L+ + E+P ++L
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPR---LERLIASFNHLAEVPELPQNL 359
Query: 211 FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270
QL + L P S + +L+++ S L + P ++L +L+++
Sbjct: 360 ---KQLHVEYNP-LREFPDIPES---VEDLRMN--SHLAEVP---ELPQNLKQLHVETNP 407
Query: 271 ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315
+ E P E + L + + + + L+
Sbjct: 408 LREFPDIPESVEDLRMNSERVVDPY---EFAHETTDKLEDDVFEH 449
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 38/255 (14%)
Query: 41 FSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSR 99
+ L + +N L + L L L L+ L LP L + + +S
Sbjct: 233 LQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291
Query: 100 IEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNK 159
+ EL + +LN S N I++ P+LEEL + KL ++
Sbjct: 292 LSELPPNLYYLNA--------SSNEIRSL-CDLPPSLEELNVSNN-KLIELPALP----- 336
Query: 160 LIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLN 219
L+ LI S L + P + + L++L ++ ++E P E + L +N
Sbjct: 337 ----PRLERLIASFN-HLAEVPELPQN---LKQLHVEYNPLREFPDIPE---SVEDLRMN 385
Query: 220 DCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SI 278
+L+ +P + L+ L + L++FP I + + +L ++ + + +
Sbjct: 386 S--HLAEVPELPQN---LKQLHVETN-PLREFPDIPES---VEDLRMNSERVVDPYEFAH 436
Query: 279 ELLPGLELLNLNDCK 293
E LE
Sbjct: 437 ETTDKLEDDVFEHHH 451
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 88/497 (17%), Positives = 174/497 (35%), Gaps = 85/497 (17%)
Query: 35 HLSAKAFSLMTNLGLLKI--NNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNL--QLD 88
++ NL +L + + + +EG L + L LD L SL S+ L
Sbjct: 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-LEHLDLSDNHLSSLSSSWFGPLS 98
Query: 89 KIVEFKMCYSRIEELWKG--IKHLNMLKVMKLSHSENL--IKTPDFTEAPNLEELYLEGC 144
+ + + + L +L L+ +++ + E I+ DF +L EL ++
Sbjct: 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Query: 145 TKLRKVHPSL-----------LLHNKLIFVE--------SLKILILSGCLKLRKFPHVVG 185
LR L ++ F+ S++ L L L +F
Sbjct: 159 -SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR-DTNLARFQFSPL 216
Query: 186 SME---------CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC 236
++ + +L EL + ++ L ++ +DC S
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 237 -----------LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGL 284
+R L + + + +E + + ++ + + VP S + L L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336
Query: 285 ELLNLNDCK---NFARVPSSINGLKSLKTLNLSGCC--KLENVPDTLGQVESLEELDISE 339
E L+L++ + + + SL+TL LS ++ + L +++L LDIS
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
Query: 340 TAVRRPPSSVFLMKNLRTLSFSGCN------GPPSSASWHLHLPFNLMGKSSCLVALMLP 393
P S + +R L+ S P + L + N + S
Sbjct: 397 NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE-VLDVSNNNLDSFS-------- 447
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKEL 452
L L +L +S L +P L + +S+N ++P I + L +L+++
Sbjct: 448 --LFLPRLQELYISRNKLKT--LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
Query: 453 EME------DCKRLQFL 463
+ C R+ +L
Sbjct: 503 WLHTNPWDCSCPRIDYL 519
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 8e-21
Identities = 69/462 (14%), Positives = 148/462 (32%), Gaps = 74/462 (16%)
Query: 78 LKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPD---FTEA 133
S+PS L + + +++I + G ++ L+V+ L + I T + F
Sbjct: 17 FTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS--SRINTIEGDAFYSL 73
Query: 134 PNLEELYLEGCTKLRKVHPSL-----------LLHNKLIFVE---------SLKILILSG 173
+LE L L L + S L+ N + +L+ L +
Sbjct: 74 GSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 174 CLKLRKFPHVV-GSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAI 231
+ + + L EL + ++ S++ + + LTL+ ++ L +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192
Query: 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--------------- 276
+R L+L + + + E S + + +
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252
Query: 277 ----SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESL 332
+ L + N ++ +++ L++ ++ +E +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 333 EELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 391
+ + + + V P S +K+L L S + + S+C
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-----------MVEEYLKNSACK---- 357
Query: 392 LPSLSGLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLK 450
SL L LS L + L +L L +S+N F +P S ++
Sbjct: 358 ----GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413
Query: 451 ELEMEDCKRLQFLPQ-LPPNIIFVKV--NGCSSLVTLLGALK 489
L + ++ + +P + + V N S L L+
Sbjct: 414 FLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ 454
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 41/224 (18%)
Query: 291 DC--KNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPS 347
D ++F +PS + ++K+L+LS K+ + L +L+ L + + +
Sbjct: 11 DGRSRSFTSIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 348 SVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 406
F + +L L S + L +L L SL L+L
Sbjct: 68 DAFYSLGSLEHLDLSDNH----------------------LSSLSSSWFGPLSSLKYLNL 105
Query: 407 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL--PASINSLLNLKELEMEDCKRLQFLP 464
+ S NL +L L + + L +L ELE++ L
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS----LR 161
Query: 465 QLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLR 508
+ + L L L +S ++ D L +R
Sbjct: 162 NYQSQSL----KSIRDIHHL--TLHLSESAFLLEIFADILSSVR 199
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 80/450 (17%), Positives = 149/450 (33%), Gaps = 41/450 (9%)
Query: 35 HLSAKAFSLMTNLGLL-----KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLP----SNL 85
L + + L L I++ +L L+N L +D ++++ L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDLSYNYIQTITVNDLQFL 176
Query: 86 Q--LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPD--FTEAPNLEELYL 141
+ + M + I+ + L + L + N L L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 142 -----EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196
+ L PS++ + ++ + L+ + + + L
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFR---LTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 197 GTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT 256
G IK L + F L++ C L P L++L L+ K +
Sbjct: 294 GVSIKYLE-DVPKHFKWQSLSIIRC-QLKQFP--TLDLPFLKSLTLTMN-KGSISFKK-V 347
Query: 257 TMEDLSELNLDGTSITEVPS---SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313
+ LS L+L +++ S L L+L+ + ++ GL+ L+ L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 406
Query: 314 SGCCKLENVPD--TLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSA 370
L+ V + +E L LDIS T + +FL + +L TL +G + ++
Sbjct: 407 QHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 371 SWHLHLPFNLMG---KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 427
S NL L + L L L++S L S L+SL+
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLS 524
Query: 428 ELYLSKNNFVTLPASINSLL-NLKELEMED 456
L S N T + +L + +
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 90/504 (17%), Positives = 165/504 (32%), Gaps = 77/504 (15%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLL----EGLEYLSNKLRLLDWHRYPLKSLPSNL--QLD 88
L + +FS + L L ++ ++ + L + L L P++S L
Sbjct: 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLT 104
Query: 89 KIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKT----PDFTEAPNLEELYLEG 143
+ +++ L I L LK + ++H N I + F+ NL + L
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAH--NFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 144 ----------CTKLRKVHPSL----LLHNKLIFVE-------SLKILILSGC-LKLRKFP 181
LR+ + N + F++ L L L G
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222
Query: 182 HVVGSMECLQELLLDGTDIKELP----LSIEHLFGLVQLTLNDCK--NLSSLPVAISSFQ 235
+ ++ L L + K+ + GL +T+++ + + I F
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282
Query: 236 CLRNLK---LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDC 292
CL N+ L+G +K + L++ + + P+ LP L+ L L
Sbjct: 283 CLANVSAMSLAGV-SIKYLEDV-PKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMN 338
Query: 293 KNFARVPSSINGLKSLKTLNLSGCC--KLENVPDTLGQVESLEELDISETAVRRPPSSVF 350
K + L SL L+LS + SL LD+S ++
Sbjct: 339 KG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396
Query: 351 LMKNLRTLSFSGCN--GPPSSASW-------HLHLPFNLMGKSSCLVALMLPSLSGLRSL 401
++ L+ L F +++ +L + + GL SL
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN------TKIDFDGIFLGLTSL 450
Query: 402 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRL 460
L ++ + + + N +L L LSK + + ++L L+ L M
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-- 508
Query: 461 QFLPQLPPNIIFVKVNGCSSLVTL 484
L L + N SL TL
Sbjct: 509 --LLFLDSSHY----NQLYSLSTL 526
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-20
Identities = 71/408 (17%), Positives = 129/408 (31%), Gaps = 51/408 (12%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFK 94
+ +AF + L N ++ L L HR L L+
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF---- 250
Query: 95 MCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSL 154
+ +G+ + + + ++ F N+ + L G ++ +
Sbjct: 251 -----EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLED-- 302
Query: 155 LLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLV 214
+ + L + C +L++FP + L+ L L + L L
Sbjct: 303 -----VPKHFKWQSLSIIRC-QLKQFPT--LDLPFLKSLTLTMNKGS-ISFKKVALPSLS 353
Query: 215 QLTL--NDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 272
L L N + LR+L LS +E+L L+ +++
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLK 412
Query: 273 EVPSSIEL--LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQV 329
V L L L+++ GL SL TL ++G +N +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472
Query: 330 ESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388
+L LD+S+ + + VF + L+ L+ S N L+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN----------------------LL 510
Query: 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 436
L + L SL+ LD S + E + SL L+ N+
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-19
Identities = 66/369 (17%), Positives = 113/369 (30%), Gaps = 51/369 (13%)
Query: 113 LKVMKLSHSENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169
K + LS N +K F+ L+ L L C ++ + L L
Sbjct: 34 TKNIDLSF--NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLH-----HLSNL 85
Query: 170 ILSGCLKLRKF-PHVVGSMECLQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSL 227
IL+G ++ F P + L+ L+ T + L I L L +L + + S
Sbjct: 86 ILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSC 143
Query: 228 PVAISSFQCLRNLK---LSGC--SKLKK--FPQIVTTMEDLSELNLDGTSITEVPSSIEL 280
+ + F L NL LS + + + L++ I +
Sbjct: 144 KLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 281 LPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGCCKLENV------PDTLGQVESL- 332
L L L N + + + L L L + P + + +
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 333 -EELDISETAVRRPPSSVFL-MKNLRTLSFSGCN------GPPSSASWHLHLPFNLMGKS 384
+E ++ T F + N+ +S +G + P L + + +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322
Query: 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASIN 444
L L L L L+ +I L SL+ L LS+N
Sbjct: 323 PTL---------DLPFLKSLTLTMNKG---SISFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 445 SLLNLKELE 453
S L L
Sbjct: 371 SDLGTNSLR 379
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 5e-15
Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 32/214 (14%)
Query: 259 EDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317
++L + + S L+ L+L+ C+ + +GL L L L+G
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-N 90
Query: 318 KLENV-PDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLH 375
+++ P + + SLE L ET + S + L+ L+ +
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF----------- 139
Query: 376 LPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN----ELY 430
+ + LP S L +L +DLS + + +D+ L L
Sbjct: 140 -----------IHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNLSLD 187
Query: 431 LSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464
+S N + + L EL + +
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-13
Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 30/196 (15%)
Query: 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENV 322
+++VP ++ + ++L+ + S + L+ L+LS C ++E +
Sbjct: 16 YQCMDQKLSKVPD--DIPSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRC-EIETI 71
Query: 323 -PDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNL 380
+ L L ++ ++ F + +L L
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK---------------- 115
Query: 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440
L +L + L +L KL+++ + +P+ NL +L + LS N T+
Sbjct: 116 ------LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 441 A-SINSLLNLKELEME 455
+ L ++ +
Sbjct: 170 VNDLQFLRENPQVNLS 185
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-23
Identities = 85/371 (22%), Positives = 141/371 (38%), Gaps = 66/371 (17%)
Query: 107 IKHLNMLKVMKLSHS--ENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 164
+ + LK + +S + + K + +LE L L + +L +
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC---G 178
Query: 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224
LK L +SG + G + + L L ++ N
Sbjct: 179 ELKHLAISGNK-------------------ISG------DVDVSRCVNLEFLDVSSN-NF 212
Query: 225 S-SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLP 282
S +P + L++L +SG F + ++T +L LN+ +P L
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 269
Query: 283 GLELLNLNDCKNFARVPSSING-LKSLKTLNLSGCCKLE-NVPDTLGQVESLEELDISET 340
L+ L+L + K +P ++G +L L+LSG VP G LE L +S
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSN 328
Query: 341 AV--RRPPSSVFLMKNLRTLSFSGCN--GPPSSASWHLHLPFNLMGKSSCLVALMLPS-- 394
P ++ M+ L+ L S G LP +L S+ L+ L L S
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGE---------LPESLTNLSASLLTLDLSSNN 379
Query: 395 LSG----------LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASI 443
SG +L +L L + G G IP + N L L+LS N T+P+S+
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 444 NSLLNLKELEM 454
SL L++L++
Sbjct: 439 GSLSKLRDLKL 449
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 6e-22
Identities = 57/256 (22%), Positives = 90/256 (35%), Gaps = 43/256 (16%)
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319
DLS L+ + V SS+ L GLE L L++ + S SL +L+LS
Sbjct: 56 DLSSKPLNVG-FSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLS 113
Query: 320 ENVPD--TLGQVESLEELDISETAVRR--PPSSVFLMKNLRTLSFSGCN----GPPSSAS 371
V +LG L+ L++S + S + +L L S +
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173
Query: 372 W-------HLHLPFNL------MGKSSCLVALML---------PSLSGLRSLTKLDLSDC 409
HL + N + + L L + P L +L LD+S
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
Query: 410 GLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQLPP 468
L G I L L +S N FV +P +L+ L + + +F ++P
Sbjct: 234 KL-SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAEN---KFTGEIPD 287
Query: 469 NIIFVKVNGCSSLVTL 484
+ C +L L
Sbjct: 288 FLS----GACDTLTGL 299
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-20
Identities = 71/310 (22%), Positives = 116/310 (37%), Gaps = 34/310 (10%)
Query: 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCK 222
V S+ + + + S+ L+ L L + I + L L L+
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 223 NLSSLP--VAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSIT-EVPSSI 278
+ ++ S L+ L +S + + L L+L SI+
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 279 EL---LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE-NVPDTLGQVESLEE 334
L L+ L ++ K V ++ +L+ L++S +P LG +L+
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQH 227
Query: 335 LDISETAVRRP-PSSVFLMKNLRTLSFSGCN--G--PPSSAS--WHLHLPFN-LMGKSSC 386
LDIS + ++ L+ L+ S G PP +L L N G+
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE--- 284
Query: 387 LVALMLP-SLSG-LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASI 443
+P LSG +LT LDLS GA+P G+ L L LS NNF LP
Sbjct: 285 -----IPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMD- 337
Query: 444 NSLLNLKELE 453
+LL ++ L+
Sbjct: 338 -TLLKMRGLK 346
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-18
Identities = 78/322 (24%), Positives = 126/322 (39%), Gaps = 39/322 (12%)
Query: 165 SLKILILSGCLKLR-KFPHVVG--SMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLND 220
SL L LS + LQEL L ++P ++ + LV L L+
Sbjct: 369 SLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 221 CKNLS-SLPVAISSFQCLRNLKLSGCSKLK-KFPQIVTTMEDLSELNLDGTSIT-EVPSS 277
LS ++P ++ S LR+LKL L+ + PQ + ++ L L LD +T E+PS
Sbjct: 428 N-YLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE-NVPDTLGQVESLEELD 336
+ L ++L++ + +P I L++L L LS N+P LG SL LD
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLD 544
Query: 337 ISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPS----SASWHLHLPFNL----------M 381
++ P+++F +F H NL +
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 382 GKSSCLVALML----------PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 431
+ S + P+ S+ LD+S L G IP +IG++ L L L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNL 663
Query: 432 SKNNFV-TLPASINSLLNLKEL 452
N+ ++P + L L L
Sbjct: 664 GHNDISGSIPDEVGDLRGLNIL 685
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 63/357 (17%), Positives = 119/357 (33%), Gaps = 53/357 (14%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
+L L L L N +L+ L L K P + + L L
Sbjct: 368 ASLLTLDLSSN-NFSGPILPNLCQNPK---NTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 194 LLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLK-K 250
L + +P S+ L L L L L +P + + L L L L +
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN-DLTGE 481
Query: 251 FPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309
P ++ +L+ ++L +T E+P I L L +L L++ +P+ + +SL
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 310 TLNLSG----------CCKLE----------NVPDTLGQVESLEELDISETAVR---RPP 346
L+L+ K + +E + +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 347 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML----------PSLS 396
+ + + + + H + ++ L + +
Sbjct: 602 EQLNRLSTRNPCNITSRV-------YGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 397 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKEL 452
+ L L+L + G+IP ++G+L LN L LS N +P ++++L L E+
Sbjct: 654 SMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 307 SLKTLNLSGCC---KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363
+ +++LS V +L + LE L +S + + S +L +L S
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110
Query: 364 N--GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDI 420
+ GP ++ L SL L L++S L + S
Sbjct: 111 SLSGPVTT----------------------LTSLGSCSGLKFLNVSSNTL-DFPGKVSGG 147
Query: 421 GNLHSLNELYLSKNNFV-TLPASINSLLNLKELE 453
L+SL L LS N+ EL+
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 19/160 (11%)
Query: 190 LQELLLDGTDIKELPLSIEHLFGLVQLTL--NDCKNLSSLPVAISSFQCLRNLKLSGCSK 247
+ + + I++ + N + ++ ++
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 248 LKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNL--NDCKNFA-RVPSSIN 303
+ L++ ++ +P I +P L +LNL N + + +P +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN---DISGSIPDEVG 677
Query: 304 GLKSLKTLNLSGCCKLEN-----VPDTLGQVESLEELDIS 338
L+ L L+LS N +P + + L E+D+S
Sbjct: 678 DLRGLNILDLSS-----NKLDGRIPQAMSALTMLTEIDLS 712
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 399 RSLTKLDLSDCGL--GEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 456
+T +DLS L G A+ S + +L L L+LS ++ + +L L++
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 457 CKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ CS L L
Sbjct: 110 N---SLSGPVTTLTSL---GSCSGLKFL 131
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Query: 179 KFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ 235
K + + +E G ++ + L + +
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 236 CLRNL-----KLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNL 289
+ L LSG P+ + +M L LNL I+ +P + L GL +L+L
Sbjct: 633 SMMFLDMSYNMLSG-----YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 290 NDCKNFARVPSSINGLKSLKTLNLS 314
+ K R+P +++ L L ++LS
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLS 712
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 85/395 (21%), Positives = 135/395 (34%), Gaps = 64/395 (16%)
Query: 107 IKHLNMLKVMKLSHSENLIKT----PDFTEAPNLEELYLEG-------------CTKLRK 149
I HL LK + ++H NLI++ F+ NLE L L ++
Sbjct: 120 IGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 150 VHPSL-LLHNKLIFVE-------SLKILILSGC-LKLRKFPHVVGSMECLQELLLDGTDI 200
++ SL L N + F++ L L L L + + L+ L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 201 KELP----LSIEHLFGLVQLTLND---CKNLSSLPVAISSFQCLRNLK---LSGCSKLKK 250
+ L GL LT+ + L I F CL N+ L + +++
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER 296
Query: 251 FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310
+ L L + P+ L L+ L K S L SL+
Sbjct: 297 VKDF-SYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGN--AFSEVDLPSLEF 351
Query: 311 LNLSGCC--KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPS 368
L+LS + SL+ LD+S V S+ ++ L L F N
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN---- 407
Query: 369 SASWHLHLPFNLMGKSSCLVALML----------PSLSGLRSLTKLDLSDCGLGEGAIPS 418
F++ L+ L + +GL SL L ++ E +P
Sbjct: 408 ---LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 419 DIGNLHSLNELYLSKNNFVTL-PASINSLLNLKEL 452
L +L L LS+ L P + NSL +L+ L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-21
Identities = 81/459 (17%), Positives = 147/459 (32%), Gaps = 59/459 (12%)
Query: 36 LSAKAFSLMTNLGLL-----KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLP-------S 83
L + L L I + +L E L+N L LD ++S+
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLH 173
Query: 84 NLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP----DFTEAPNLEEL 139
+ L + + + + + G +++ KL+ N LE
Sbjct: 174 QMPL-LNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 140 YL-----EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194
L L K S L + +E ++ L L + + +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD--YYLDDIIDLFNCLTNVSSFS 288
Query: 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQI 254
L I+ + + FG L L +C P + L+ L + F ++
Sbjct: 289 LVSVTIERVK-DFSYNFGWQHLELVNC-KFGQFP--TLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 255 VTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 311
+ L L+L ++ S L+ L+L+ + S+ GL+ L+ L
Sbjct: 345 --DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 401
Query: 312 NLSGCCKLENV--PDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCN---- 364
+ L+ + + +L LDIS T R + +F + +L L +G +
Sbjct: 402 DFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 365 GPPSSASW-----HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419
P + L L L L + + L SL L++S
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQ------LEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFP 513
Query: 420 IGNLHSLNELYLSKNNFVTLPASI--NSLLNLKELEMED 456
L+SL L S N+ +T + +L L +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 7e-21
Identities = 79/413 (19%), Positives = 133/413 (32%), Gaps = 71/413 (17%)
Query: 121 SENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL 177
S N ++ F P L+ L L C +++ + L LIL+G +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS-----HLSTLILTGN-PI 88
Query: 178 RKF-PHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLS-SLPVAISSF 234
+ + LQ+L+ T++ L I HL L +L + S LP S+
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 235 QCLRNLKLSGCSKLKKF-PQIVTTMEDLS----ELNLDGTSITEVPSSIELLPGLELLNL 289
L +L LS K++ + + + L+L + + L L L
Sbjct: 149 TNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 290 NDCKNFARVPS-SINGLKSLKTLNLS-------------------GCCKL---------- 319
+ + V I GL L+ L G C L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 320 ----ENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG---PPSSASW 372
+++ D + ++ + + R + + L C P
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKS 326
Query: 373 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG-EGAIPSDIGNLHSLNELYL 431
L F + + LPSL LDLS GL +G SL L L
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSL------EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 432 SKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
S N +T+ ++ L L+ L+ + L Q+ +F +L+ L
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSN----LKQMSEFSVF---LSLRNLIYL 426
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 31/214 (14%)
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319
ELN ++P + L + L+L+ S L+ L+LS C
Sbjct: 13 QCMELNF-----YKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 320 ENVPDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPF 378
+ L L ++ ++ F + +L+ L N
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-------------- 111
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 438
L +L + L++L +L+++ + +P NL +L L LS N +
Sbjct: 112 --------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 439 L-PASINSLLNLKELEMEDCKRLQFLPQLPPNII 471
+ + L + L + L + + P
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 31/301 (10%)
Query: 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSL-----------PVAISSFQCLRNLKLSGCS 246
K L LS L L + L L A S L L L+G
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 247 KLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCK-NFARVPSSING 304
+ + L +L T++ + I L L+ LN+ ++P +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 305 LKSLKTLNLSGCCKLENV-PDTLGQVESLE----ELDISETAVRRPPSSVFLMKNLRTLS 359
L +L+ L+LS K++++ L + + LD+S + F L L+
Sbjct: 148 LTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 360 FSGCN---------GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT--KLDLSD 408
+ L L +L GL +LT + L+
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 409 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPP 468
I L +++ L + + LE+ +CK QF
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPTLKLK 325
Query: 469 N 469
+
Sbjct: 326 S 326
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 9e-22
Identities = 81/496 (16%), Positives = 165/496 (33%), Gaps = 70/496 (14%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLS----NKLRLLDWHRYPLKSLPSNL--QLD 88
++A +F + L LL++ + ++ + LR+LD + L + L
Sbjct: 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97
Query: 89 KIVEFKMCYSRIEELW---KGIKHLNMLKVMKLSHSENLIKT----PDFTEAPNLEELYL 141
+ E ++ + + + ++L L + LS N I++ P F + +L+ +
Sbjct: 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK--NQIRSLYLHPSFGKLNSLKSIDF 155
Query: 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSG----CLKLRKFPHVVGSME--CLQELLL 195
++ V L + +L L+ + + L+ L +
Sbjct: 156 SSN-QIFLVCEHELEPLQGK---TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211
Query: 196 DGTDIKELP----------LSIEHLFGLVQLTLNDCK--NLSSLPVAISSFQC---LRNL 240
G L + N+ + +R+L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271
Query: 241 KLSGCSKLKKFPQIV-TTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARV 298
LS + V T++DL LNL I ++ L L++LNL+
Sbjct: 272 DLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 299 PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTL 358
S+ GL + ++L T +E L+ LD+ + A+ +++ + ++ +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDI 386
Query: 359 SFSGCN----GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG 414
SG + + +HL N + L L + L L L+
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDIL-----YFLLRVPHLQILILNQNRFSSC 441
Query: 415 AIPSDIGNLHSLNELYLSKNNFVTLPAS------INSLLNLKELEMEDCKRLQFLPQLPP 468
+ SL +L+L +N + L +L+ L + L LPP
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY----LNSLPP 497
Query: 469 NIIFVKVNGCSSLVTL 484
+ + ++L L
Sbjct: 498 GVF----SHLTALRGL 509
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 39/217 (17%), Positives = 67/217 (30%), Gaps = 31/217 (14%)
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCK 318
D ++T+VP L E L L+ V +S L+ L+ L L
Sbjct: 5 DGRIAFYRFCNLTQVPQV---LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 319 LENV-PDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHL 376
+ + + +L LD+ + + F + +L L C
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG------------ 108
Query: 377 PFNLMGKSSCLVALMLPS--LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434
L +L L++LT+LDLS + + G L+SL + S N
Sbjct: 109 ----------LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Query: 435 NFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNII 471
+ L K L ++ +
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 2e-21
Identities = 80/386 (20%), Positives = 139/386 (36%), Gaps = 74/386 (19%)
Query: 118 LSHSENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGC 174
L +N IKT +F P+LEEL L + V P + +L+ L L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLF-----NLRTLGLRSN 90
Query: 175 LKLRKFP-HVVGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAIS 232
+L+ P V + L +L + I L + + L+ L L + D L +
Sbjct: 91 -RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISH--R 146
Query: 233 SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLND 291
+F L +L+ +L L+ ++T +P+ ++ L GL +L L
Sbjct: 147 AFSGLNSLE---------------------QLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 292 CKNFARVPSSI-NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVF 350
N + L LK L +S L+ + +L L I+ + P
Sbjct: 186 L-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 351 L-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409
+ LR L+ S + + L L L ++ L
Sbjct: 245 RHLVYLRFLNLSYNP----------------------ISTIEGSMLHELLRLQEIQLVGG 282
Query: 410 GLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEME------DCKRLQ 461
L + L+ L L +S N TL S+ +S+ NL+ L ++ DC RL
Sbjct: 283 QLAV--VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC-RLL 339
Query: 462 FLPQLPPNIIFVKVNG-CSSLVTLLG 486
++ + + F + C++ + G
Sbjct: 340 WVFRRRWRLNFNRQQPTCATPEFVQG 365
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 32/211 (15%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCC 317
+ L+L I + P LE L LN+ + V N L +L+TL L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS-N 90
Query: 318 KLENVP-DTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLH 375
+L+ +P + +L +LDISE + +F + NL++L +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND----------- 139
Query: 376 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKN 434
LV + + SGL SL +L L C L IP++ +LH L L L
Sbjct: 140 -----------LVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHL 186
Query: 435 NFVTLPASI-NSLLNLKELEMEDCKRLQFLP 464
N + L LK LE+ L +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 47/294 (15%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQL----LEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLD 88
+ AF+ + NL L + + +L L LSN L LD + L + L
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLY 128
Query: 89 KIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKT---PDFTEAPNLEELYLEGC 144
+ ++ + + + LN L+ + L + + + L L L
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK--CNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204
+ + + LK+L +S L L L + ++ +P
Sbjct: 187 -NINAIRDYSFKR-----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 205 -LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263
L++ HL L L L+ +S++ S L L+ E
Sbjct: 241 YLAVRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQ---------------------E 276
Query: 264 LNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSG 315
+ L G + V L L +LN++ + + S+ + + +L+TL L
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 36/218 (16%)
Query: 34 VHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIV 91
V++S +AFS + +L L + L S+P+ L ++
Sbjct: 141 VYISHRAFSGLNSLEQLTLEK-----------CNLT----------SIPTEALSHLHGLI 179
Query: 92 EFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENL-IKTPDFTEAPNLEELYLEGCTKLRK 149
++ + I + K L LKV+++SH L TP+ NL L + C L
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTA 238
Query: 150 VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV-GSMECLQELLLDGTDIKELPLSI- 207
V + H L+ L LS + + + LQE+ L G + +
Sbjct: 239 VPYLAVRHLV-----YLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 208 EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSG 244
L L L ++ + L++L S L L L
Sbjct: 293 RGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 78/464 (16%), Positives = 133/464 (28%), Gaps = 49/464 (10%)
Query: 111 NMLKVMKLSHSENLIKTPDFTEAPNLEELYL-----------EGCTKLRKVHPSLLLHNK 159
N + + T + L L E T L K+ N
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLI---CTSNN 75
Query: 160 LIFVE-----SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLV 214
+ ++ +L L KL V + L L D + +L +S L
Sbjct: 76 ITTLDLSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVS--QNPLLT 130
Query: 215 QLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV 274
L L+ + +S L L K+ K VT L+ L+ ITE+
Sbjct: 131 YLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185
Query: 275 PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 334
+ L LN + N ++ +N L L+ S KL + + + L
Sbjct: 186 D--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSS-NKLTEID--VTPLTQLTY 237
Query: 335 LDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 394
D S + S L TL + + + L + + L +
Sbjct: 238 FDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295
Query: 395 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEM 454
+ L LD G+ E D+ L LYL+ L ++ LK L
Sbjct: 296 NTQL---YLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSC 346
Query: 455 EDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAI 514
+ +Q + + L ++ + D L N
Sbjct: 347 VNAH-IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405
Query: 515 LMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRP 558
+ ++ + + + F +N TVT P
Sbjct: 406 PGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTP 449
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 3e-21
Identities = 70/420 (16%), Positives = 129/420 (30%), Gaps = 64/420 (15%)
Query: 32 NEVHLSAKAFSLMTNLGLLKINNVQL--LEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDK 89
+ + L L +N + + G+E L+ L L + +L + Q
Sbjct: 29 EMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG-LTKLICTSNNITTLDLS-QNTN 86
Query: 90 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRK 149
+ +++ L + L L + N + D ++ P L L L +
Sbjct: 87 LTYLACDSNKLTNL--DVTPLTKLTYLNCDT--NKLTKLDVSQNPLLTYLNCARN-TLTE 141
Query: 150 VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEH 209
+ S L L K+ K V L L I EL +S
Sbjct: 142 IDVSHNT--------QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS--Q 189
Query: 210 LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269
L +L + N++ L ++ L L S KL + VT + L+ +
Sbjct: 190 NKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN 243
Query: 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329
+TE+ S L L L+ + + L GC K++ + +
Sbjct: 244 PLTELDVST--LSKLTTLHCIQTDL---LEIDLTHNTQLIYFQAEGCRKIKELD--VTHN 296
Query: 330 ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA 389
L LD + + L L + L
Sbjct: 297 TQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTE----------------------LTE 332
Query: 390 LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNL 449
L +S L L + + + S +G + +LN + ++ +T+P + +L
Sbjct: 333 L---DVSHNTKLKSLSCVNAHIQD--FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 59/329 (17%), Positives = 116/329 (35%), Gaps = 33/329 (10%)
Query: 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELPL 205
+ + + I + + KI+ +RK P ++ S ++ L L+ I+E+
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 206 SI-EHLFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLS 262
+ + +L + + LP + + L L L L P I L+
Sbjct: 87 YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144
Query: 263 ELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 321
L++ ++ + + L+ L L+ V S + SL N+S N
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS--LIPSLFHANVSY-----N 196
Query: 322 VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN--GPPSSAS----WHLH 375
+ TL ++EELD S ++ V L L N + +
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVD 254
Query: 376 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435
L +N L +M ++ L +L +S+ L + + +L L LS N+
Sbjct: 255 LSYNE------LEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH 306
Query: 436 FVTLPASINSLLNLKELEMEDCKRLQFLP 464
+ + + L+ L ++ + L
Sbjct: 307 LLHVERNQPQFDRLENLYLDHN-SIVTLK 334
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 28/198 (14%)
Query: 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQ 328
+ S+++ ++++ L + K + + +P L
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STMRKLPAALLDS 67
Query: 329 VESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388
+E L++++ + + F T+ L++ FN +
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAF--AYAHTIQ-------------KLYMGFNA------IR 106
Query: 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSL 446
L + LT L L L +P I N L L +S NN + +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 447 LNLKELEMEDCKRLQFLP 464
+L+ L++ RL +
Sbjct: 165 TSLQNLQLSSN-RLTHVD 181
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 6e-21
Identities = 57/350 (16%), Positives = 120/350 (34%), Gaps = 53/350 (15%)
Query: 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF 180
++++ + N + + + +RK+ +LL + +++L L+ ++ +
Sbjct: 38 TQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFR-----QVELLNLNDL-QIEEI 90
Query: 181 PHVV-GSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLR 238
+Q+L + I+ LP + +++ L L L LSSLP I F
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI--FHNTP 147
Query: 239 NLK---LSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294
L +S L++ L L L +T V S L+P L N++
Sbjct: 148 KLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLL 204
Query: 295 FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354
S++ +++ L+ S + V + L L + + +
Sbjct: 205 -----STLAIPIAVEELDASHN-SINVVRGPVNV--ELTILKLQHNNLTDTAWLLNY-PG 255
Query: 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG 414
L + S L +M ++ L +L +S+ L
Sbjct: 256 LVEVDLSYNE----------------------LEKIMYHPFVKMQRLERLYISNNRLVA- 292
Query: 415 AIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464
+ + +L L LS N+ + + + L+ L ++ + L
Sbjct: 293 -LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK 340
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 7e-21
Identities = 43/272 (15%), Positives = 94/272 (34%), Gaps = 42/272 (15%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSK 247
+ + + +K+ S+ + + + +L L+ LS + ++ F L L LS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-V 69
Query: 248 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKS 307
L + + ++ L L+L+ + E+ P +E L+ + N +RV S +
Sbjct: 70 LYETLDL-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSCSR--GQG 121
Query: 308 LKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFL--MKNLRTLSFSGCN 364
K + L+ K+ + D G ++ LD+ + + L L+
Sbjct: 122 KKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 365 GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLH 424
++ + L LDLS L + + +
Sbjct: 181 ---------IY---------------DVKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAA 214
Query: 425 SLNELYLSKNNFVTLPASINSLLNLKELEMED 456
+ + L N V + ++ NL+ ++
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 8e-20
Identities = 51/351 (14%), Positives = 109/351 (31%), Gaps = 53/351 (15%)
Query: 66 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSE 122
N+ ++ LK ++L + E + + + ++ + L+++ LS
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-- 67
Query: 123 NLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP 181
N++ D L L L +N + +
Sbjct: 68 NVLYETLDLESLSTLRTLDLN--------------NNYVQELLVGP-------------- 99
Query: 182 HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNL 240
++ L +I + S G + L + K ++ L + ++ L
Sbjct: 100 -------SIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYL 149
Query: 241 KLSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV 298
L ++ F ++ + + L LNL I +V + + L+ L+L+ A +
Sbjct: 150 DLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFM 206
Query: 299 PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN--LR 356
+ ++L KL + L ++LE D+ F KN ++
Sbjct: 207 GPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 357 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 407
T++ +P + C L P L +L
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 28/239 (11%)
Query: 252 PQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310
+I + +S+ + +S+ + ++ L+L+ + + L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 311 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN---GPP 367
LNLS L D L + +L LD++ V + + ++ TL + N
Sbjct: 63 LNLSS-NVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSC 116
Query: 368 SSASW--HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425
S +++L N + L + LDL + + +
Sbjct: 117 SRGQGKKNIYLANN------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 426 LNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
L L L N + + LK L++ K L + P + + +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNK----LAFMGPEF-----QSAAGVTWI 219
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 40/268 (14%), Positives = 80/268 (29%), Gaps = 42/268 (15%)
Query: 200 IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV-TTM 258
I E+ + + D +L S ++ L LSG L +
Sbjct: 2 IHEIKQ---NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPF 57
Query: 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
L LNL + E +E L L L+LN+ + S++TL+ +
Sbjct: 58 TKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAAN-NN 110
Query: 319 LENVPDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLP 377
+ V + GQ + + ++ + ++ L
Sbjct: 111 ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE------------- 155
Query: 378 FNLMGKSSCLVALMLPSLSG-LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 436
+ + L+ +L L+L + + + + L L LS N
Sbjct: 156 ---------IDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQV-VFAKLKTLDLSSNKL 203
Query: 437 VTLPASINSLLNLKELEMEDCKRLQFLP 464
+ S + + + + K L +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK-LVLIE 230
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 20/232 (8%)
Query: 40 AFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSR 99
++ L L +NN + E L + + L + + + + ++
Sbjct: 75 DLESLSTLRTLDLNNNYVQE-LLVGPS-IETLHAANNNISRVSCSR-GQGKKNIYLANNK 131
Query: 100 IEEL-WKGIKHLNMLKVMKLSHSENLIKTPD----FTEAPNLEELYLEGCTKLRKVHPSL 154
I L + ++ + L N I T + + LE L L+ + V +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV 188
Query: 155 LLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLV 214
+ LK L LS KL S + + L + + ++ L
Sbjct: 189 VFAK-------LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 215 QLTLNDCK-NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265
L + +L S Q ++ + KL + T+ L
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 8e-21
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 44/233 (18%)
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFA-RVPSSINGLKSLKTLNLSGCCK 318
DLS LNL +PSS+ LP L L + N +P +I L L L ++
Sbjct: 56 DLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-N 112
Query: 319 LE-NVPDTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCN--GPPSSASWHL 374
+ +PD L Q+++L LD S A+ P S+ + NL ++F G G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-------- 164
Query: 375 HLPFNLMGKSSCLVALML----------PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLH 424
+P + S ++ + P+ + L +L +DLS L EG G+
Sbjct: 165 -IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGDASVLFGSDK 221
Query: 425 SLNELYLSKNNFV-TLPASINSLLNLKEL-------------EMEDCKRLQFL 463
+ +++L+KN+ L + NL L + K L L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-20
Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 34/264 (12%)
Query: 181 PHVVGSMECLQELLLDGTDI---KELPLSIEHLFGLVQLTLNDCKNLS-SLPVAISSFQC 236
+ L L G ++ +P S+ +L L L + NL +P AI+
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102
Query: 237 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNF 295
L L ++ + P ++ ++ L L+ +++ +P SI LP L + + +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 296 ARVPSSINGLKSLKT-LNLSGCCKLE-NVPDTLGQVESLEELDISETAVR-RPPSSVFLM 352
+P S L T + +S +L +P T + +L +D+S +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 353 KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412
KN + + + + L L + ++L LDL + +
Sbjct: 221 KNTQKIHLAKNS---------------LAFD--------LGKVGLSKNLNGLDLRNNRI- 256
Query: 413 EGAIPSDIGNLHSLNELYLSKNNF 436
G +P + L L+ L +S NN
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNL 280
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 32/149 (21%)
Query: 322 VPDTLGQVESLEELDISE---TAVRRPPSSVFLMKNLRTLSFSGCNG-----PPSSASWH 373
+ DT Q + LD+S PSS+ + L L G N PP+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----- 96
Query: 374 LHLPFNLMGKSSCLVALML----------PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 423
+ K + L L + LS +++L LD S L G +P I +L
Sbjct: 97 -------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSL 148
Query: 424 HSLNELYLSKNNFV-TLPASINSLLNLKE 451
+L + N +P S S L
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFT 177
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 61/314 (19%), Positives = 111/314 (35%), Gaps = 55/314 (17%)
Query: 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV 184
IK DF NL L L K+ K+ P + L+ L LS +L++ P
Sbjct: 67 IKDGDFKNLKNLHTLILINN-KISKISPGAFAP-----LVKLERLYLSKN-QLKELP--E 117
Query: 185 GSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243
+ LQEL + +I ++ S+ L ++ + L L S + +FQ ++ L
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLS-- 174
Query: 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-SI 302
+ + T+IT +P L P L L+L+ K +V + S+
Sbjct: 175 -------------------YIRIADTNITTIPQG--LPPSLTELHLDGNK-ITKVDAASL 212
Query: 303 NGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFS 361
GL +L L LS + V + +L L EL ++ + + P + K ++
Sbjct: 213 KGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ----- 266
Query: 362 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI- 420
++L N + + S + + L + I
Sbjct: 267 -----------VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315
Query: 421 GNLHSLNELYLSKN 434
++ + L
Sbjct: 316 RCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 48/282 (17%)
Query: 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK---LSGC 245
L L I E+ ++L L L L + K +S + +F L L+ LS
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISP--GAFAPLVKLERLYLSK- 109
Query: 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNL--NDCKNFARVPSSI 302
++LK+ P+ + L EL + IT+V S+ L + ++ L N K+ +
Sbjct: 110 NQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 303 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFS 361
G+K L + ++ + +P L SL EL + + + ++ + NL L S
Sbjct: 168 QGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 362 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421
+ A+ SL+ L +L L++ L + +P +
Sbjct: 225 FN----------------------SISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLA 260
Query: 422 NLHSLNELYLSKNNFVTLPAS-------INSLLNLKELEMED 456
+ + +YL NN + ++ + + +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 76/298 (25%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFK 94
+S AF+ + L L ++ N+L+ L + +P LQ
Sbjct: 90 KISPGAFAPLVKLERLYLSK-----------NQLKELP------EKMPKTLQ-------- 124
Query: 95 MCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PD--FTEAPNLEELYLEG-CTKLRKV 150
+L EN I F + + L K +
Sbjct: 125 ----------------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 151 HPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-LSIEH 209
K L + ++ + P G L EL LDG I ++ S++
Sbjct: 163 ENGAFQGMK-----KLSYIRIADT-NITTIPQ--GLPPSLTELHLDGNKITKVDAASLKG 214
Query: 210 LFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268
L L +L L+ +S++ ++++ LR L L+ KL K P + + + + L
Sbjct: 215 LNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272
Query: 269 TSITEVPSS-------IELLPGLELLNLNDCKNFARV----PSSINGLKSLKTLNLSG 315
+I+ + S+ ++L N + PS+ + + L
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFS--NPVQYWEIQPSTFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 59/219 (26%)
Query: 30 PVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDK 89
P+ + AF M L ++I + + + + LP +L
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIAD-----------TNITTIP------QGLPPSLT--- 195
Query: 90 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRK 149
EL L K++ + NL +L L +
Sbjct: 196 ------------ELH--------LDGNKITK----VDAASLKGLNNLAKLGLSFN-SISA 230
Query: 150 VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP----- 204
V L + L+ L L+ KL K P + + +Q + L +I +
Sbjct: 231 VDNGSLAN-----TPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 205 --LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 241
++L + + S+F+C+
Sbjct: 285 PPGYNTKKASYSGVSLFS-NPVQYWEIQPSTFRCVYVRA 322
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 6e-18
Identities = 55/358 (15%), Positives = 99/358 (27%), Gaps = 86/358 (24%)
Query: 112 MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILIL 171
ML + +L + + Y K K N+ V LK ++
Sbjct: 4 MLPINNNF---SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEA--VSLLKECLI 58
Query: 172 SGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231
+ EL L+ ++ LP ++ + L + L SLP
Sbjct: 59 NQ----------------FSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLPELP 99
Query: 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 291
+S L L +L P+ L L++D +T +P EL LE +N ++
Sbjct: 100 AS---LEYLDACDN-RLSTLPE---LPASLKHLDVDNNQLTMLP---ELPALLEYINADN 149
Query: 292 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL 351
+ +P SL+ L++ +L +P+ SLE LD+S + P+
Sbjct: 150 NQ-LTMLPELPT---SLEVLSVRNN-QLTFLPELPE---SLEALDVSTNLLESLPAVPVR 201
Query: 352 MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 411
+ + +
Sbjct: 202 NHHSEET------------------------------------------EIFFRCRENRI 219
Query: 412 GEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPN 469
IP +I +L + L N + S +
Sbjct: 220 TH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-10
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 33/224 (14%)
Query: 39 KAFSLMTNLGLLKINNVQLLEGL-EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCY 97
A+ L N + + L E L N+ L +R L SLP NL +I ++
Sbjct: 31 SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQ 89
Query: 98 SRIEELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYL---------EGCTKL 147
+ + L + L L +N + T P+ +L+ L + E L
Sbjct: 90 NALISLPELPASLEYLDA-----CDNRLSTLPE--LPASLKHLDVDNNQLTMLPELPALL 142
Query: 148 RKVHPSLLLHNKLIFV----ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203
++ +N+L + SL++L + +L P E L+ L + ++ L
Sbjct: 143 EYIN---ADNNQLTMLPELPTSLEVLSVRNN-QLTFLPE---LPESLEALDVSTNLLESL 195
Query: 204 PLSIEHLFGLVQLTLN-DCKN--LSSLPVAISSFQCLRNLKLSG 244
P + + C+ ++ +P I S + L
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 50/293 (17%), Positives = 103/293 (35%), Gaps = 38/293 (12%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK---LSGC 245
++ L L I + S + L L L ++++ SF L +L+ LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEE--DSFSSLGSLEHLDLSYN 110
Query: 246 SKLKKFPQIV-TTMEDLSELNLDGTSITEVPSSI--ELLPGLELLNLNDCKNFARVPSSI 302
L + L+ LNL G + + L L++L + + F ++
Sbjct: 111 -YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 303 -NGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVF-LMKNLRTLS 359
GL L+ L + L++ +L ++++ L + + ++ L
Sbjct: 170 FAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 360 FSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419
L S L SL + + ++D L + +
Sbjct: 229 LR-----------DTDLDTF---HFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKL 272
Query: 420 IGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEME------DCKRLQFLPQ 465
+ + L EL S+N ++P I + L +L+++ + C R+ +L +
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 28/230 (12%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
+ L+L IT + +S + L+ L L S + L SL+ L+LS
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NY 111
Query: 319 LENVP-DTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHL 376
L N+ + SL L++ + +S+F S L
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--------------------SHLTKL 151
Query: 377 PFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNN 435
+G + +GL L +L++ L ++ +++ L L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHLILHMKQ 209
Query: 436 FVTLPASI-NSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
+ L + +++ LE+ D F + + +
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 30/242 (12%)
Query: 129 DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV-GSM 187
D NL+ L L + + SL+ L LS L +
Sbjct: 71 DLQRCVNLQALVLTSN-GINTIEEDSFSSLG-----SLEHLDLSYN-YLSNLSSSWFKPL 123
Query: 188 ECLQELLLDGTDIKELPLSI--EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSG 244
L L L G K L + HL L L + + + + + L L++
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 245 CSKLKKFPQIV-TTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI 302
L+ + +++++S L L + ++ +E L L D
Sbjct: 184 S-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD----------- 231
Query: 303 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSG 362
L + LS ++L + + + I++ ++ + + + L L FS
Sbjct: 232 TDLDTFHFSELS-----TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 363 CN 364
Sbjct: 287 NQ 288
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 74/288 (25%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFK 94
+ +FS + +L L ++ N L +L S+ F
Sbjct: 90 TIEEDSFSSLGSLEHLDLSY-----------NY----------LSNLSSSW-------F- 120
Query: 95 MCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PD---FTEAPNLEELYLEGCTKLRKV 150
K L+ L + L N KT + F+ L+ L + K+
Sbjct: 121 -------------KPLSSLTFLNLLG--NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 151 HPSLLLHNKLIFVESLKILILSGCLKLRKFPH-VVGSMECLQELLLDGTDIKELPLSIEH 209
+ L+ L + L+ + + S++ + L+L L E
Sbjct: 166 QRKDFAG-----LTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLL---EI 216
Query: 210 LF-GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268
+ C L + F L + + K + +
Sbjct: 217 FVDVTSSVE---CLELRDTDLDTFHFSELSTGETNSLIKKFT----------FRNVKITD 263
Query: 269 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSG 315
S+ +V + + GL L + + VP I + L SL+ + L
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHT 310
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-17
Identities = 62/273 (22%), Positives = 97/273 (35%), Gaps = 56/273 (20%)
Query: 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248
+ L L +I+ + + HL L L L ++ + V +F L +L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEV--GAFNGLASLN------- 126
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLK 306
L L +T +PS E L L L L + +PS N +
Sbjct: 127 --------------TLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVP 171
Query: 307 SLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365
SL L+L KLE + + +L+ L++ ++ P+ L L L SG +
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL-VGLEELEMSGNH- 229
Query: 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLH 424
+ S GL SL KL + + + I + L
Sbjct: 230 ---------------------FPEIRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLA 266
Query: 425 SLNELYLSKNNFVTLPASI-NSLLNLKELEMED 456
SL EL L+ NN +LP + L L EL +
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 34/239 (14%)
Query: 232 SSFQCLRNLKLSGCSK--LKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLN 288
S C C++ L + PQ + + + LNL +I + + L LE+L
Sbjct: 48 SVCSCSNQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 289 LNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPS 347
L + NGL SL TL L L +P + L EL + + PS
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
Query: 348 SVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 406
F + +L L L + + GL +L L+L
Sbjct: 165 YAFNRVPSLMRLDLGELKK---------------------LEYISEGAFEGLFNLKYLNL 203
Query: 407 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLP 464
C + + +P ++ L L EL +S N+F + S + L +LK+L + + ++ +
Sbjct: 204 GMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIE 258
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 38/243 (15%)
Query: 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HV 183
I+ F +LE L L +R++ + SL L L L P
Sbjct: 90 IQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-----LASLNTLELFDN-WLTVIPSGA 142
Query: 184 VGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242
+ L+EL L I+ +P + L++L L + K L + +F+ L NLK
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLK- 199
Query: 243 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-S 301
LNL +I ++P ++ L GLE L ++ F + S
Sbjct: 200 --------------------YLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGS 237
Query: 302 INGLKSLKTLNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPSSVF-LMKNLRTLS 359
+GL SLK L + ++ + + + SL EL+++ + P +F ++ L L
Sbjct: 238 FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Query: 360 FSG 362
Sbjct: 297 LHH 299
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/279 (18%), Positives = 99/279 (35%), Gaps = 54/279 (19%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQL----------LEGLEYL---SNKLRLLDWHRYPLKSL 81
+ AF+ + +L L++ + L L L L +N + + Y +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAFNRV 170
Query: 82 PS--NLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKT-PDFTEAPNLE 137
PS L L + ++E + +G + L LK + L IK P+ T LE
Sbjct: 171 PSLMRLDLGE-------LKKLEYISEGAFEGLFNLKYLNLGM--CNIKDMPNLTPLVGLE 221
Query: 138 ELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF-PHVVGSMECLQELLLD 196
EL + G ++ P + SLK L + ++ + + L EL L
Sbjct: 222 ELEMSG-NHFPEIRPGSFHG-----LSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLA 274
Query: 197 GTDIKELPLSI-EHLFGLVQLTLN------DCKNLSSLPVAISSFQCLRNLKLSGCS--- 246
++ LP + L LV+L L+ DC ++ L + + + C
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC-DILWLAWWLREYIPTNSTCCGRCHAPM 333
Query: 247 --KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPG 283
+ + ++ D + I + P + + G
Sbjct: 334 HMRGRYLVEV-----DQASFQCSAPFIMDAPRDLNISEG 367
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 67/452 (14%), Positives = 141/452 (31%), Gaps = 48/452 (10%)
Query: 35 HLSAKAFSLMTNLGLLKI--NNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNLQLDKI 90
L ++ L +L I N +Q L+ ++ L LD L + + +
Sbjct: 35 ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKLVKISCH-PTVNL 92
Query: 91 VEFKMCYSRIEELWKG--IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR 148
+ ++ + L +++ LK + LS ++ +L +
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLST--THLEKSSVLPIAHLNISKVLLVLGET 150
Query: 149 KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT-------DIK 201
+ ESL I+ + V ++ L+ +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 202 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC--------LRNLKLSGCSKLKKFPQ 253
+ ++ L LTLN+ + + + I + N+KL G + F
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 254 IVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 312
T+++ LS + S I E+ + + N + + L+
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 313 LSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASW 372
S + V + G + LE L + ++ + +++L
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-------------Q 377
Query: 373 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 432
L + N + S +SL L++S L + + L L
Sbjct: 378 QLDISQNSVSYD-----EKKGDCSWTKSLLSLNMSSNILTDT--IFRCL-PPRIKVLDLH 429
Query: 433 KNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464
N ++P + L L+EL + + L+ +P
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQ-LKSVP 460
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 5e-17
Identities = 59/273 (21%), Positives = 99/273 (36%), Gaps = 56/273 (20%)
Query: 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248
+ L L I+ + S +HL L L L+ + ++ + +F L NL
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIG--AFNGLANLN------- 115
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLK 306
L L +T +P+ L L+ L L + +PS N +
Sbjct: 116 --------------TLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIP 160
Query: 307 SLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365
SL+ L+L +L + + +L L+++ +R P+ L L L SG +
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL-IKLDELDLSGNH- 218
Query: 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLH 424
L A+ S GL L KL + + I + NL
Sbjct: 219 ---------------------LSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQ 255
Query: 425 SLNELYLSKNNFVTLPASI-NSLLNLKELEMED 456
SL E+ L+ NN LP + L +L+ + +
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-16
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 34/239 (14%)
Query: 232 SSFQCLRNLKLSGCSK--LKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLN 288
S C C + L++ P ++T + LNL I + + + L LE+L
Sbjct: 37 SVCSCSNQFSKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94
Query: 289 LNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPS 347
L+ + NGL +L TL L +L +P + L+EL + + PS
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 348 SVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 406
F + +LR L L + + GL +L L+L
Sbjct: 154 YAFNRIPSLRRLDLGELKR---------------------LSYISEGAFEGLSNLRYLNL 192
Query: 407 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLP 464
+ C L E IP ++ L L+EL LS N+ + S L++L++L M ++Q +
Sbjct: 193 AMCNLRE--IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE 247
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 38/243 (15%)
Query: 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HV 183
IK F +LE L L +R + + +L L L +L P
Sbjct: 79 IKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-----LANLNTLELFDN-RLTTIPNGA 131
Query: 184 VGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242
+ L+EL L I+ +P + L +L L + K LS + +F+ L NL+
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLR- 188
Query: 243 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-S 301
LNL ++ E+P ++ L L+ L+L+ + + S
Sbjct: 189 --------------------YLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIRPGS 226
Query: 302 INGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVF-LMKNLRTLS 359
GL L+ L + +++ + + ++SL E++++ + P +F + +L +
Sbjct: 227 FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Query: 360 FSG 362
Sbjct: 286 LHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 82/287 (28%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFK 94
+ +F + +L +L+++ N +R ++ F
Sbjct: 78 IIKVNSFKHLRHLEILQLSR-----------NHIR----------TIEIGA-------F- 108
Query: 95 MCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT---PDFTEAPNLEELYLEGCTKLRKVH 151
L L ++L N + T F L+EL+L + +
Sbjct: 109 -------------NGLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNN-PIESIP 152
Query: 152 PSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELPLSIEHL 210
+ SL+ L L +L + L+ L L +++E+P ++ L
Sbjct: 153 SYAFNR-----IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPL 206
Query: 211 FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270
L +L L+ LS++ SFQ L +L+ +L + +
Sbjct: 207 IKLDELDLSGNH-LSAIRP--GSFQGLMHLQ---------------------KLWMIQSQ 242
Query: 271 ITEVPS-SIELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSG 315
I + + + L L +NL N +P + L L+ ++L
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 49/271 (18%), Positives = 106/271 (39%), Gaps = 38/271 (14%)
Query: 35 HLSAKAFSLMTNLGLLKI--NNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNL--QLD 88
+ AF+ + NL L++ N + + YLS L+ L P++S+PS ++
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK-LKELWLRNNPIESIPSYAFNRIP 160
Query: 89 KIVEFKMC-YSRIEELWKGI-KHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCT 145
+ + R+ + +G + L+ L+ + L+ ++ P+ T L+EL L G
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM--CNLREIPNLTPLIKLDELDLSGN- 217
Query: 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELP 204
L + P + L+ L + +++ + +++ L E+ L ++ LP
Sbjct: 218 HLSAIRPGSFQG-----LMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 205 LSI-EHLFGLVQLTLN------DCKNLSSLPVAISSFQCLRNLKLSGCS-----KLKKFP 252
+ L L ++ L+ +C ++ L I + C+ K +
Sbjct: 272 HDLFTPLHHLERIHLHHNPWNCNC-DILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIG 330
Query: 253 QIVTTMEDLSELNLDGTSITEVPSSIELLPG 283
++ D + I E P+ + + G
Sbjct: 331 EL-----DQNYFTCYAPVIVEPPADLNVTEG 356
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 51/275 (18%), Positives = 91/275 (33%), Gaps = 55/275 (20%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248
L L+ ++ LP + + L L +L+L+ LS S +LK
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLK------- 81
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI-NGLKS 307
L+L + + S+ L LE L+ S+ L++
Sbjct: 82 --------------YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 308 LKTLNLSGCCKLENVPD-TLGQVESLEELDISE-TAVRRPPSSVFL-MKNLRTLSFSGCN 364
L L++S + + SLE L ++ + +F ++NL L S C
Sbjct: 128 LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 365 GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNL 423
L L + + L SL L++S ++ + L
Sbjct: 187 ----------------------LEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCL 222
Query: 424 HSLNELYLSKNNFVTLPASI--NSLLNLKELEMED 456
+SL L S N+ +T + +L L +
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 49/211 (23%), Positives = 76/211 (36%), Gaps = 30/211 (14%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNL--NDCKNFARVPSSINGLKSLKTLNLSGC 316
+ L L+ + +P + + L L L+L N S G SLK L+LS
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 317 CKLENVPDTLGQVESLEELDISETAVRR-PPSSVFL-MKNLRTLSFSGCNGPPSSASWHL 374
+ + +E LE LD + +++ SVFL ++NL L S +
Sbjct: 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---------- 137
Query: 375 HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434
+GL SL L ++ E +P L +L L LS+
Sbjct: 138 ------------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 435 NFVTLPASI-NSLLNLKELEMEDCKRLQFLP 464
L + NSL +L+ L M L
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD 215
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 61/310 (19%), Positives = 94/310 (30%), Gaps = 84/310 (27%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC---L 190
+ L LE KL+ + + + L L LS L S L
Sbjct: 28 SSATRLELES-NKLQSLPHGVFDK-----LTQLTKLSLSSN-GLSFKGCCSQSDFGTTSL 80
Query: 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK 250
+ L L + + + L L L NL + S F LRNL
Sbjct: 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMS-EFSVFLSLRNLI--------- 129
Query: 251 FPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310
L++ T + I F GL SL+
Sbjct: 130 ------------YLDISHTHTRVAFNGI----------------FN-------GLSSLEV 154
Query: 311 LNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPS 368
L ++G EN PD ++ +L LD+S+ + + + F + +L+ L+ S N
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN---- 210
Query: 369 SASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI--GNLHSL 426
+L L SL LD S + SL
Sbjct: 211 ------------------FFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSL 250
Query: 427 NELYLSKNNF 436
L L++N+F
Sbjct: 251 AFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 39/224 (17%), Positives = 79/224 (35%), Gaps = 24/224 (10%)
Query: 36 LSAKAFSLMTNLGLL-----KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQ-LDK 89
L F +T L L ++ ++ + L+ LD + ++ SN L++
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 90 IVEFKMCYSRIEELWKG--IKHLNMLKVMKLSHSENLIKT-PD--FTEAPNLEELYLEGC 144
+ +S ++++ + L L + +SH + + F +LE L + G
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGN 160
Query: 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV-GSMECLQELLLDGTDIKEL 203
+ P + + +L L LS C +L + S+ LQ L + + L
Sbjct: 161 SFQENFLPDIFTE-----LRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 204 PLSI-EHLFGLVQLTLNDCKNLSSLPVAI--SSFQCLRNLKLSG 244
+ L L L + ++ + L L L+
Sbjct: 215 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 1e-15
Identities = 70/475 (14%), Positives = 140/475 (29%), Gaps = 90/475 (18%)
Query: 31 VNEVHLSAKAFSLMTNLGLLKINNVQLL--EGLEYLSNKLRLL-----------DWHRYP 77
V+++ L A + +L LK++ +GL + R + +
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 78 LKSLPSNLQLDKIVEFKMCYSR---IEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAP 134
L L + +++ F M ++L ++ L +K+ E L F A
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 135 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194
NLEE + + + L+F L L LS + P + +++L
Sbjct: 244 NLEEFCGGSLNEDIGMP---EKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299
Query: 195 LDGTDI--KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP 252
L + ++ I+ L L + L V + L+ L++ + +
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359
Query: 253 QIVTTMED------------LSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNF 295
+ L + + + IT + + ++ L L+ L+ +
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419
Query: 296 ------ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 349
V S + G K L+ + D L +
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQ--GGLTD-----LGLSYI-------------G 459
Query: 350 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409
N+R + L+ G +L KL++ C
Sbjct: 460 QYSPNVRWMLLGYVGE-----------------SDEGLMEF----SRGCPNLQKLEMRGC 498
Query: 410 GLGEGAIPSDIGNLHSLNELYLSKNNF----VTLPASINSLLNLKELEMEDCKRL 460
E AI + + L SL L++ L N++ + +
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 47/348 (13%), Positives = 101/348 (29%), Gaps = 55/348 (15%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
PNL L L+G + +L+ N +V I + L+ +
Sbjct: 73 PNLRSLKLKGKPRAAMF--NLIPENWGGYVTPWVTEISNNL-------------RQLKSV 117
Query: 194 LLDG---TDIKELPLSIEHLFGLVQLTLNDCKNLS--SLPVAISSFQCLRNLKLSGCSKL 248
+D+ L+ L L L+ C + L ++ + ++ L + S
Sbjct: 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177
Query: 249 KKFPQIVTTMED----LSELNLDGTSITEV-PSSIELL----PGLELLNLNDCKN--FAR 297
+K + + + L LN T ++ P +E + L + + D +
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237
Query: 298 VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRT 357
+ L+ +L+ + L L L +S P +R
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297
Query: 358 LSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP 417
L + +L L+ + +G+ +
Sbjct: 298 LDLLYALLETEDH---------------------CTLIQKCPNLEVLETRNV-IGDRGLE 335
Query: 418 SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEM--EDCKRLQFL 463
L L + + L++ + L + C+ L+++
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 50/326 (15%), Positives = 95/326 (29%), Gaps = 53/326 (16%)
Query: 216 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275
+T+ C + F LR+LKL G + M +L N G V
Sbjct: 55 VTMALCYTAT-PDRLSRRFPNLRSLKLKGKPRA--------AMFNLIPENWGGYVTPWVT 105
Query: 276 SSIELLPGLELLNLNDCKN---------FARVPS------------SINGLKSL------ 308
L L+ ++ AR + +GL S+
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165
Query: 309 -KTLNLSGCCKLENVPDTLGQV----ESLEELDISETAVRRPPSSVFL-----MKNLRTL 358
KTL + E L ++ SLE L+ T + ++L ++
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 359 SFSGCNGPPSSASWHL--HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 416
+ +L G + + + ++ + L +G +
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285
Query: 417 PSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLKELEMEDC---KRLQFLPQLPPNII 471
P + +L L T I NL+ LE + + L+ L Q +
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345
Query: 472 FVKVNGCSSLVTLLGALKLCKSNGIV 497
+++ + + L G++
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLI 371
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 62/281 (22%), Positives = 101/281 (35%), Gaps = 47/281 (16%)
Query: 190 LQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK---LSGC 245
L L DI EL + L L L L + K +S + +F LR L+ +S
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHE--KAFSPLRKLQKLYISK- 111
Query: 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNL--NDCKNFARVPSSI 302
+ L + P L EL + I +VP + L + + + N +N P +
Sbjct: 112 NHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 303 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSG 362
+GLK L L +S KL +P L E+L EL + ++ L
Sbjct: 170 DGLK-LNYLRISEA-KLTGIPKDL--PETLNELHLDHNKIQAIELEDL--LRYSKLY--- 220
Query: 363 CNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 422
L L N + + SLS L +L +L L + L +P+ + +
Sbjct: 221 ----------RLGLGHN------QIRMIENGSLSFLPTLRELHLDNNKLSR--VPAGLPD 262
Query: 423 LHSLNELYLSKNNFVTLPASI-------NSLLNLKELEMED 456
L L +YL NN + + + + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 46/314 (14%), Positives = 98/314 (31%), Gaps = 56/314 (17%)
Query: 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV 184
++ DF +L L L K+ K+H + L+ L +S L + P
Sbjct: 69 LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR-----KLQKLYISKN-HLVEIP--P 119
Query: 185 GSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243
L EL + I+++P + L + + + L + +F L+
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLK----- 173
Query: 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-SI 302
L+ L + +T +P +L L L+L+ K + +
Sbjct: 174 -----------------LNYLRISEAKLTGIPK--DLPETLNELHLDHNK-IQAIELEDL 213
Query: 303 NGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFS 361
L L L ++ + + +L + +L EL + + R P+ + +K L+
Sbjct: 214 LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ----- 267
Query: 362 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI- 420
++L N + K + + L + + +
Sbjct: 268 -----------VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
Query: 421 GNLHSLNELYLSKN 434
+ +
Sbjct: 317 RCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 55/268 (20%), Positives = 93/268 (34%), Gaps = 66/268 (24%)
Query: 223 NLSSLPVAISS---FQCLRNLKLSGCS--KLKKFPQIVTTMEDLSELNLDGTSITEVP-S 276
+L SLP S+ F C +L++ CS LK P+ ++ D + L+L I+E+
Sbjct: 15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKD 72
Query: 277 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 336
+ L L L L + K + + L+ L+ L +S L +P SL EL
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP--NLPSSLVELR 129
Query: 337 ISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS 396
I + +R+ P VF S
Sbjct: 130 IHDNRIRKVPKGVF---------------------------------------------S 144
Query: 397 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 456
GLR++ +++ L + LN L +S+ +P + L EL ++
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDH 202
Query: 457 CKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
K + + + S L L
Sbjct: 203 NK----IQAIELEDL----LRYSKLYRL 222
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 66/465 (14%), Positives = 157/465 (33%), Gaps = 47/465 (10%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLSN-------KLRLLDWHRYPLKSLPSNLQL 87
L S ++ L +L++++ ++ L L LD L+++ +
Sbjct: 66 ELRMPDISFLSELRVLRLSHNRI----RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PM 120
Query: 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 147
+ + ++ + L + N+ K+ L S + D +L +
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180
Query: 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD-----GTDIKE 202
+ ++ L ++ L + V ++ LQ + +
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240
Query: 203 LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQ--------CLRNLKLSGCSKLKKFPQI 254
+ L+ +TL + V + F + NL ++ ++F
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300
Query: 255 VTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNL--NDCKNFARVPSSINGLKSLKTL 311
T ++ L ++ ++ + + + L +D V S L
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTFL 358
Query: 312 NLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC--NGPPSS 369
N + ++V ++ L+ L + ++ + KN+ +L N S
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 370 ASWHL-HLPFNLMG---KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425
A +++ S+ L + L + LDL + + +IP D+ +L +
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQA 474
Query: 426 LNELYLSKNNFVTLPASI-NSLLNLKELEMED------CKRLQFL 463
L EL ++ N ++P + + L +L+ + + D C +++L
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 52/325 (16%), Positives = 98/325 (30%), Gaps = 33/325 (10%)
Query: 165 SLKILILSGCLKLRKFPHVV-GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN 223
L++L LS ++R V + L+ L + ++ + + L L L+ +
Sbjct: 77 ELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS-FND 132
Query: 224 LSSLPVAISSFQCLRNLK---LSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSSI 278
LPV F L L LS +K ++ + L+L I +
Sbjct: 133 FDVLPVC-KEFGNLTKLTFLGLSA-AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190
Query: 279 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS-------GCCKLENVPDTLGQVES 331
+P +L+L N + +L L LS C +L L + +
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250
Query: 332 LEELDISETAVRRPPS----SVFLMKNLRTLSFSGC--NGPPSSASW---HLHLPFNLMG 382
L + + S F + + L+ + L ++
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
Query: 383 KSSCLVALMLPSL--SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440
V L S + LS + + S L ++N F
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSV 369
Query: 441 ASI-NSLLNLKELEMEDCKRLQFLP 464
++L L+ L ++ L+
Sbjct: 370 FQGCSTLKRLQTLILQR-NGLKNFF 393
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 33/244 (13%)
Query: 220 DC--KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277
C + L ++PV I + + + L G +L+ L L + + ++
Sbjct: 17 SCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 278 I-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLENVP-DTLGQVESLEE 334
L LE L+L+D V + +GL L TL+L C L+ + + +L+
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQY 133
Query: 335 LDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 394
L + + A++ P F ++L L+ HL L N + ++ +
Sbjct: 134 LYLQDNALQALPDDTF--RDLGNLT-------------HLFLHGNR------ISSVPERA 172
Query: 395 LSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKEL 452
GL SL +L L + + +L L LYL NN LP L L+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 453 EMED 456
+ D
Sbjct: 231 RLND 234
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 42/246 (17%)
Query: 78 LKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKTPD---FTEA 133
L+++P + + +RI + + L ++ L N++ D FT
Sbjct: 23 LQAVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHS--NVLARIDAAAFTGL 79
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV-GSMECLQE 192
LE+L L +LR V P+ + L L L C L++ + + LQ
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRC-GLQELGPGLFRGLAALQY 133
Query: 193 LLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKF 251
L L ++ LP L L L L+ +SS+P +F+ L +L
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPE--RAFRGLHSLD---------- 180
Query: 252 PQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLK 309
L L + V L L L L N + +P+ L++L+
Sbjct: 181 -----------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQ 228
Query: 310 TLNLSG 315
L L+
Sbjct: 229 YLRLND 234
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-15
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 30/179 (16%)
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317
M L+ + L ++T++ + IE ++ L +N+ A + I+GL +L+ L + G
Sbjct: 43 MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIH--ATNYNPISGLSNLERLRIMGKD 99
Query: 318 KLENVPDTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHL 376
+ L + SL LDIS +A + + + ++ S
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-------- 151
Query: 377 PFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435
+ L L L L++ G+ + I + LN+LY
Sbjct: 152 ---------------IMPLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 5e-13
Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 26/158 (16%)
Query: 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSF 360
+ + SL + L+ + ++ + ++++L I+ + + + NL L
Sbjct: 39 TEAQMNSLTYITLANI-NVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRI 95
Query: 361 SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420
G + + + +P+LSGL SLT LD+S + + + I
Sbjct: 96 MGKD----------------------VTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKI 132
Query: 421 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458
L +N + LS N +T + +L LK L ++
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-10
Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 13/188 (6%)
Query: 107 IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166
I + ++ + +L + L + + HN +
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDLTGIEYAHN-------I 68
Query: 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLS 225
K L ++ + + + L+ L + G D+ + + L L L ++ +
Sbjct: 69 KDLTINNI-HATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 285
S+ I++ + ++ LS + + T+ +L LN+ + + IE P L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDY-RGIEDFPKLN 184
Query: 286 LLNLNDCK 293
L
Sbjct: 185 QLYAFSQT 192
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 44/263 (16%), Positives = 99/263 (37%), Gaps = 38/263 (14%)
Query: 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249
++ +++ + + L G+ L+ ++++ + L L+L ++
Sbjct: 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QIT 76
Query: 250 KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309
+ + ++EL L G + V S+I L ++ L+L + + GL +L+
Sbjct: 77 DLAPL-KNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTS--TQITDVTPLAGLSNLQ 132
Query: 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSS 369
L L ++ N+ L + +L+ L I V S + + NL L+
Sbjct: 133 VLYLDLN-QITNISP-LAGLTNLQYLSIGNAQV----SDLTPLANLSKLT---------- 176
Query: 370 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 429
L N + + L+ L +L ++ L + + + S + N +L +
Sbjct: 177 ---TLKADDNKISD--------ISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIV 222
Query: 430 YLSKNNFVTLPASINSLLNLKEL 452
L+ P N+ L + +
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNV 245
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 47/267 (17%), Positives = 102/267 (38%), Gaps = 23/267 (8%)
Query: 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKH 109
+NV L + L + ++ L+ ++ ++ ++I +L +K+
Sbjct: 26 AGKSNVTDTVTQADLDG-ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-APLKN 83
Query: 110 LNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168
L + ++LS N +K +++ L L T++ V P L N L++
Sbjct: 84 LTKITELELSG--NPLKNVSAIAGLQSIKTLDL-TSTQITDVTPLAGLSN-------LQV 133
Query: 169 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228
L L ++ + + LQ L + + +L + +L L L +D K +S +
Sbjct: 134 LYLDLN-QITNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDIS 189
Query: 229 VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELL 287
++S L + L ++ + +L + L +IT P L ++
Sbjct: 190 -PLASLPNLIEVHLKNN-QISDVSPL-ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
Query: 288 NLNDCKNFARVPSSINGLKSLKTLNLS 314
A P++I+ + + NL+
Sbjct: 247 KGPSGAPIA--PATISDNGTYASPNLT 271
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 47/269 (17%), Positives = 87/269 (32%), Gaps = 61/269 (22%)
Query: 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249
+ E + T IK++ + L+ ++
Sbjct: 1 MGETITVSTPIKQIF------------PDDAFAETIKD--------NLKKKSVTDAVTQN 40
Query: 250 KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309
+ + ++ + + I V I+ LP + L LN K + LK+L
Sbjct: 41 ELNS-------IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLG 90
Query: 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSS 369
L L K++++ +L ++ L+ L + + + + + L +L
Sbjct: 91 WLFLDEN-KIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK----- 142
Query: 370 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 429
+ LS L L L L D + + + L L L
Sbjct: 143 -------------------ITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNL 180
Query: 430 YLSKNNFVTLPASINSLLNLKELEMEDCK 458
YLSKN+ L A + L NL LE+ +
Sbjct: 181 YLSKNHISDLRA-LAGLKNLDVLELFSQE 208
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 3e-14
Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 67/285 (23%)
Query: 53 NNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNM 112
++ + + + + + + + +L+ I + S I+ + +GI++L
Sbjct: 9 TPIKQIFPDDAFAE-TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPN 66
Query: 113 LKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILIL 171
+ + L+ N + T NL L+L+ NK+ + SLK
Sbjct: 67 VTKLFLNG--NKLTDIKPLTNLKNLGWLFLD--------------ENKIKDLSSLK---- 106
Query: 172 SGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231
++ L+ L L+ I ++ + HL L L L + K I
Sbjct: 107 --------------DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK--------I 143
Query: 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 291
+ L L L L+L+ I+++ + L L+ L L+
Sbjct: 144 TDITVLSRLT------------------KLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 184
Query: 292 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 336
N ++ GLK+L L L L + + +
Sbjct: 185 --NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 392 LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKE 451
+ + L S+ ++ ++ + + I L ++ +L+L+ N + + +L NL
Sbjct: 36 AVTQNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGW 91
Query: 452 LEM-----------EDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIV-IE 499
L + +D K+L+ L L N I +NG L L +L L N I I
Sbjct: 92 LFLDENKIKDLSSLKDLKKLKSL-SLEHNGI-SDINGLVHL-PQLESLYLGN-NKITDIT 147
Query: 500 CIDSLKLLRN 509
+ L L
Sbjct: 148 VLSRLTKLDT 157
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 60/354 (16%), Positives = 120/354 (33%), Gaps = 43/354 (12%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV-GSMECLQE 192
++ + L + +++ + ++ L+ L + + + L
Sbjct: 30 AHVNYVDLSL-NSIAELNETSFSR-----LQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83
Query: 193 LLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK---LSGCSKL 248
L LD +L L L LTL C L ++ + F+ L +L+ L + +
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRD-NNI 141
Query: 249 KKF-PQIV-TTMEDLSELNLDGTSITEVPSSI----------EL-LPGLELLNLNDCKNF 295
KK P M L+L + + L L + L ++N+
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 296 ARVPSSINGLKSLKTLNLSGC---CKLENVPDTLGQVESLEELDISETAVRRPPSSVFLM 352
+ S+ TL+LSG + ++ L +S + S F
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN---MGSSFGH 258
Query: 353 KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412
N + G +S L + + AL+ S L +L L+ +
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKS------KIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 413 EGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQFLP 464
+ I + L L +L LS+N ++ + + +L L+ L++ ++ L
Sbjct: 313 K--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG 363
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 72/458 (15%), Positives = 132/458 (28%), Gaps = 109/458 (23%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLE-----YLSNKLRLLDWHRYPLKSLPSNL--QL 87
L+ +FS + +L LK+ + LS+ L +L L + L
Sbjct: 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIILKLDYNQFLQLETGAFNGL 102
Query: 88 DKIVEFKMCYSRIEELW--KGI-KHLNMLKVMKLSHSENLIKT--PD--FTEAPNLEELY 140
+ + ++ K L L+++ L N IK P F L
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPASFFLNMRRFHVLD 160
Query: 141 LEG----CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196
L + H L+ + S+ + ++ + + L L
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 197 GTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT 256
G KE + F + T LS+ SSF + F +
Sbjct: 221 GNGFKESMA--KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT----FKGLEA 274
Query: 257 TMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315
+ + +L + I + S+ LE L L N + +
Sbjct: 275 S--GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-----------NEINKID------ 315
Query: 316 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375
+ + L +L++S+ + S +F
Sbjct: 316 -------DNAFWGLTHLLKLNLSQNFLGSIDSRMF------------------------- 343
Query: 376 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKN 434
L L LDLS + A+ L +L EL L N
Sbjct: 344 --------------------ENLDKLEVLDLSYNHIR--ALGDQSFLGLPNLKELALDTN 381
Query: 435 NFVTLPASI-NSLLNLKELEME------DCKRLQFLPQ 465
++P I + L +L+++ + C R+ +L +
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 50/318 (15%), Positives = 103/318 (32%), Gaps = 41/318 (12%)
Query: 32 NEVHLSAKAFSLMTNLGLLKINNVQL----LEGLEYLSNKLRLLDWHRYPLKSLPSNLQL 87
+ LS F +T+L +L + + + + +LD +KS+
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-- 173
Query: 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 147
+ + L S ++ + + T +
Sbjct: 174 -------------------LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214
Query: 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSI 207
+ L N + + K ++ S T+ K+
Sbjct: 215 TTLD---LSGNGF---KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 208 EHLFGLVQLTLNDCKN--LSSLPVAI-SSFQCLRNLKLSGCSKLKKFPQIV-TTMEDLSE 263
+ D + +L ++ S F L L L+ +++ K + L +
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLK 327
Query: 264 LNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLEN 321
LNL + + S + E L LE+L+L+ + GL +LK L L +L++
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDT-NQLKS 385
Query: 322 VPD-TLGQVESLEELDIS 338
VPD ++ SL+++ +
Sbjct: 386 VPDGIFDRLTSLQKIWLH 403
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 33/226 (14%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCC 317
+ EL T + + LE + ++ + + + + L L + +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 318 KLENVP-DTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTL--------------SFS 361
L + + + +L+ L IS T ++ P + L SF
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 362 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI- 420
G S S L L N + + + +G + + L E +P+D+
Sbjct: 151 GL----SFESVILWLNKNG------IQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVF 198
Query: 421 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL 466
L +S+ +LP+ L NLK+L L+ LP L
Sbjct: 199 HGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTL 242
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 58/313 (18%), Positives = 120/313 (38%), Gaps = 24/313 (7%)
Query: 78 LKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENL--IKTPDFTEAP 134
+ +PS+L + +E + +++ + KG L+ +++S ++ L I+ F+ P
Sbjct: 21 VTEIPSDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 135 NLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV--GSMECLQE 192
L E+ +E L ++P + +L+ L++S ++ P V S++ +
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLP-----NLQYLLISNT-GIKHLPDVHKIHSLQKVLL 133
Query: 193 LLLDGTDIKELP-LSIEHL-FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK 250
+ D +I + S L F V L LN + + + + L L LS + L++
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEE 192
Query: 251 FPQ-IVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSL 308
P + L++ T I +PS E L L + N ++P ++ L +L
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLP-TLEKLVAL 248
Query: 309 KTLNLSG---CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365
+L+ CC N + ++ + I V + +L + S +
Sbjct: 249 MEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSR 308
Query: 366 PPSSASWHLHLPF 378
Sbjct: 309 GFDMTYTEFDYDL 321
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 45/250 (18%), Positives = 78/250 (31%), Gaps = 59/250 (23%)
Query: 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSK 247
EL T ++ + + L ++ ++ L + S+ L +++ +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 248 LKKFPQIV-TTMEDLSELNLDGTSITEVPS------------------SIELLPG----- 283
L + +L L + T I +P +I +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 284 ----LELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDIS 338
+L LN + +S L LNLS LE +P D LDIS
Sbjct: 152 LSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210
Query: 339 ETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 397
T + PS +K LR S +++L LP+L
Sbjct: 211 RTRIHSLPSYGLENLKKLRARS-----------TYNLK---------------KLPTLEK 244
Query: 398 LRSLTKLDLS 407
L +L + L+
Sbjct: 245 LVALMEASLT 254
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 41/269 (15%)
Query: 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKF 251
E + T IK++ S + ++ L K + V + + + + +K
Sbjct: 6 ETITVPTPIKQIF-SDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNS-DIKSV 61
Query: 252 PQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 311
I + ++++L L+G +T++ + L L L L++ K + SS+ LK LK+L
Sbjct: 62 QGI-QYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSL 117
Query: 312 NLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSAS 371
+L + ++ L + LE L + + + + + L TLS
Sbjct: 118 SLEHN-GISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ------- 167
Query: 372 WHLHLPFNLMGKSSCLVALM-LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELY 430
+ + L+GL L L LS + + + L +L+ L
Sbjct: 168 ------------------ISDIVPLAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLE 206
Query: 431 LSKNNFVTLPASINS-LLNLKELEMEDCK 458
L + P + S L+ ++ D
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGS 235
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 47/267 (17%), Positives = 90/267 (33%), Gaps = 70/267 (26%)
Query: 51 KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 110
I + + + + + + + +L+ I + S I+ + +GI++L
Sbjct: 13 PIKQIFSDDAFA----ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYL 67
Query: 111 NMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169
+ + L+ N + NL L+L+ NK+ + SLK
Sbjct: 68 PNVTKLFLNG--NKLTDIKPLANLKNLGWLFLD--------------ENKVKDLSSLK-- 109
Query: 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV 229
++ L+ L L+ I ++ + HL L L L + K
Sbjct: 110 ----------------DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK------- 145
Query: 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNL 289
I+ L L L L+L+ I+++ + L L+ L L
Sbjct: 146 -ITDITVLSRLT------------------KLDTLSLEDNQISDI-VPLAGLTKLQNLYL 185
Query: 290 NDCKNFARVPSSINGLKSLKTLNLSGC 316
+ N ++ GLK+L L L
Sbjct: 186 SK--NHISDLRALAGLKNLDVLELFSQ 210
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 34/197 (17%)
Query: 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 321
SE T I ++ S + NL K + N L S+ + + +++
Sbjct: 5 SETITVPTPIKQI-FSDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNS-DIKS 60
Query: 322 VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLM 381
V + + ++ +L ++ + + + NL+ L L L N +
Sbjct: 61 VQG-IQYLPNVTKLFLNGNKLT----DIKPLANLKNLG-------------WLFLDENKV 102
Query: 382 GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 441
L SL L+ L L L G+ + + + +L L LYL N +
Sbjct: 103 KD--------LSSLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDITV 151
Query: 442 SINSLLNLKELEMEDCK 458
++ L L L +ED +
Sbjct: 152 -LSRLTKLDTLSLEDNQ 167
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 9e-12
Identities = 90/463 (19%), Positives = 152/463 (32%), Gaps = 48/463 (10%)
Query: 35 HLSAKAFSLMTNLGLLKINNVQLLEGLEYLS-NKLRLLDWHRYPLKSLPSNLQLDKIVEF 93
L + + GL I L+ L + + D + L P +
Sbjct: 134 VLVLSSCEGFSTDGLAAI--AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191
Query: 94 KMCYSRIEELWKGIKHL----NMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLR 148
S + ++ L LK +KL+ + L K AP LEEL G T
Sbjct: 192 SCLASEVSF--SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE- 248
Query: 149 KVHPSLLLHNKLIFVESLKILILSGCLKL--RKFPHVVGSMECLQELLLDGTDI--KELP 204
V P + + ++ LSG P V L L L + +L
Sbjct: 249 -VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 205 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264
+ L +L + D + L V S+ + LR L++ P + T + L +
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 265 NLDGTSITEVPSSIELLPGLELLNLNDCKNF--ARVPSSINGLKSLKTLNLSGCCKLENV 322
P LE + L C+ A + + ++ L
Sbjct: 368 -------------SMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413
Query: 323 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC---NGPPSSASWHLHLPFN 379
TL E LDI A+ K+LR LS SG ++ +
Sbjct: 414 YLTL------EPLDIGFGAIVE------HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEML 461
Query: 380 LMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 439
+ + M LSG SL KL++ DC G+ A+ ++ L ++ L++S + V+
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSF 520
Query: 440 PASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLV 482
A + +L +E P + +V ++
Sbjct: 521 GACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVA 563
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 63/381 (16%), Positives = 120/381 (31%), Gaps = 49/381 (12%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL--RKFPHVVGSMECLQ 191
LEE+ L+ + K + K+L+LS C + + L+
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFK-----NFKVLVLSSCEGFSTDGLAAIAATCRNLK 159
Query: 192 ELLLDGTDIKELPLSI-----EHLFGLVQLTLNDCKNL---SSLPVAISSFQCLRNLKLS 243
EL L +D+ ++ + LV L ++ + S+L ++ L++LKL+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219
Query: 244 GCSKLKKFPQIVTTMEDLSELNL-------DGTSITEVPSSIELLPGLELLNLNDCKNFA 296
L+K ++ L EL + + ++ L L+ A
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279
Query: 297 RVPSSINGLKSLKTLNLSGCCKL-ENVPDTLGQVESLEELDISETAVRRPPSSVF-LMKN 354
+P+ + L TLNLS ++ L Q L+ L + + + K+
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339
Query: 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG 414
LR L + L LV++ G L + +
Sbjct: 340 LRELRVFPSEPFVMEPNVAL--------TEQGLVSV----SMGCPKLESVLYFCRQMTNA 387
Query: 415 AIPSDIGNLHSLNELYLSKNNFVTLPASINSLLN--LKELEMEDCKRLQFLPQLPPNIIF 472
A+ + N ++ L L+ + +E CK L+ L
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-VEHCKDLRRL--------- 437
Query: 473 VKVNGCSSLVTLLGALKLCKS 493
++G + K
Sbjct: 438 -SLSGLLTDKVFEYIGTYAKK 457
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 7e-09
Identities = 53/282 (18%), Positives = 86/282 (30%), Gaps = 48/282 (17%)
Query: 216 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275
+ + +C +S I F +R+++L G +L G +
Sbjct: 48 VFIGNCYAVS-PATVIRRFPKVRSVELKGKPHF--------ADFNLVPDGWGGYVYPWIE 98
Query: 276 SSIELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLENVPDTLGQV----E 330
+ LE + L I K+ K L LS C D L +
Sbjct: 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCR 156
Query: 331 SLEELDISETAVRRPPSSVF-----LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385
+L+ELD+ E+ V +L +L+ S S S
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS---------------FS 201
Query: 386 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 445
L L ++ +L L L+ E + + + L EL P +
Sbjct: 202 ALERL----VTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG 256
Query: 446 LLNLKELEMEDCKRLQFL---PQLPPNIIFVKVNGCSSLVTL 484
L + CK L+ L P + + CS L TL
Sbjct: 257 LSVA----LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
++ I P + + +R++ G G + +
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGK-------PHFADFNLVPDGWGGYVYPWIEA 99
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT---LPASINSLLNLK 450
S L ++ L + + + + + L LS + L A + NLK
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159
Query: 451 ELEMEDCKR-------LQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKS 493
EL++ + L P +++ + ++ +S V+ +L
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 5e-11
Identities = 45/324 (13%), Positives = 101/324 (31%), Gaps = 33/324 (10%)
Query: 128 PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 187
+ L + E + P +++ L L+ L F +
Sbjct: 266 TVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGS 325
Query: 188 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247
+ +E +L + L + L+ + + L + S + L+ L+
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQELEPENKWC 384
Query: 248 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFA--RVPSSINGL 305
L ++ ++ L S+++ + + L+D ++
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYF----STLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440
Query: 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365
++ L+L+ L + L Q+ + LD+S +R P ++ ++ L L S
Sbjct: 441 ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD--- 495
Query: 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425
N + + ++ L L +L L + L + A + +
Sbjct: 496 -------------NALEN--------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534
Query: 426 LNELYLSKNNFVTLPASINSLLNL 449
L L L N+ L +
Sbjct: 535 LVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 38/233 (16%), Positives = 65/233 (27%), Gaps = 30/233 (12%)
Query: 237 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFA 296
L L+ F I T + E L L L+ +
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKST 362
Query: 297 RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLR 356
+ S + K L+ L + EN L + + LD ++ L+
Sbjct: 363 VLQSELESCKELQEL------EPENKWCLLTIILLMRALDPLLY----EKETLQYFSTLK 412
Query: 357 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 416
+ S L L + + + L L+ L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADV--------------RVLHLAHKDLTV--- 455
Query: 417 PSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK--RLQFLPQLP 467
+ L + L LS N LP ++ +L L+ L+ D + + LP
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP 508
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIK 108
L ++ +L LE L + LD L++LP L L + + + +E + G+
Sbjct: 448 LAHKDLTVLCHLEQLLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVA 505
Query: 109 HLNMLKVMKLSHSENLIKTPD----FTEAPNLEELYLEG 143
+L L+ + L + N ++ P L L L+G
Sbjct: 506 NLPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQG 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 94/558 (16%), Positives = 189/558 (33%), Gaps = 131/558 (23%)
Query: 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKIN------------NVQLLEGLEYL 64
+ VE ++ +Y F ++ + + S+MT + + + + NV L+ L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 65 SNKLRLLDWHRYPL--------KS-LPSNLQLDKIVEFKMCYSRIEELWKGIKH------ 109
L L + L K+ + ++ L V+ KM + +I W +K+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KI--FWLNLKNCNSPET 197
Query: 110 -LNMLKVMKLSHSENLIKTPDFTEAP--NLEELYLEGCTKLR-----KVHPSLLL----- 156
L ML+ + N D + + + +LR K + + LL
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNV 253
Query: 157 -HNKLI--FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGL 213
+ K F S KIL+ + ++ F + + E+ + L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLK 309
Query: 214 VQLTLNDCKNLSSLPVAISSFQCLRN-LKLSGCSK-LKKFPQIVTTMEDLSELNLDGTSI 271
L+ C+ LP + N +LS ++ ++ T ++ +N D +
Sbjct: 310 Y---LD-CR-PQDLPREV----LTTNPRRLSIIAESIRDGL---ATWDNWKHVNCDKLTT 357
Query: 272 TEVPSSIELLPGLELLNL-NDCKNF---ARVPSSINGLKSL-------------KTLNLS 314
+ SS+ +L E + + F A +P+ + L + L+
Sbjct: 358 I-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 315 GCCKLENVPDTLG----QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSA 370
+ + T+ +E +L+ +E A+ R S V +T P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLE-NEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 371 SWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS-------DCGLGEGAIPSDIGNL 423
++ H+ +L ++ R + LD A S + L
Sbjct: 472 YFYSHIGHHLKN------IEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 424 HSLN--ELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSL 481
L + Y+ N+ +N++L+ FLP++ N+I K + L
Sbjct: 525 QQLKFYKPYICDND-PKYERLVNAILD-------------FLPKIEENLICSK---YTDL 567
Query: 482 VTLLGALKLCKSNGIVIE 499
+ + AL + + I E
Sbjct: 568 LRI--AL-MAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 88/579 (15%), Positives = 157/579 (27%), Gaps = 203/579 (35%)
Query: 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISS----FQCLRNLKLSGCSKLKK 250
D D++++P SI L+ + ++ A+S F L + ++K
Sbjct: 33 FDCKDVQDMPKSI--------LSKEEIDHIIMSKDAVSGTLRLFWTLLS---KQEEMVQK 81
Query: 251 FPQIVTTMEDLSELNLD--GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308
F +E++ +N + I P + + ++
Sbjct: 82 F------VEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRD-------------- 117
Query: 309 KTLNLSGCCKLENVPDTL--GQVESLEELDISETAVR--RPPSSVFL--MKNLRTLSFSG 362
+L N V L+ A+ RP +V + + G
Sbjct: 118 ---------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--------G 160
Query: 363 CNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG-----LGEGAIP 417
GK+ + S D L P
Sbjct: 161 S------------------GKT-WVAL------DVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 418 SDIGNLHSLNELY--LSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKV 475
+ L L +L + N S N L + ++ E +RL
Sbjct: 196 ETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYE-------- 244
Query: 476 NGCSSLVTL--------LGALKL-CKSNGIVIECIDSLKLLRNNGWAILML-REYLEAVS 525
+ L+ L A L CK IL+ R + V+
Sbjct: 245 ---NCLLVLLNVQNAKAWNAFNLSCK---------------------ILLTTRF--KQVT 278
Query: 526 DPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRI 585
D L +T + +E S+ + K + C +PR
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL----------LLKYLD---CRPQDLPREVLTT 325
Query: 586 KKRRHSYELQCCMDG-SDRGFFITFGGKFSHSGSDHLW------LLFLSP---RECYDRR 635
+ + S R T+ + H D L L L P R+ +DR
Sbjct: 326 NP------RRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 636 WIFESNH-----------FKLSFNDARE------KYDMAGSGTGLKVKRCGFHPVYMHEV 678
+F + F + +D KY + K +Y+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELK 436
Query: 679 EELDQTTKQWTH---FTSYNL---YESDH---DFLDQIW 708
+L+ + H YN+ ++SD +LDQ +
Sbjct: 437 VKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 85/562 (15%), Positives = 144/562 (25%), Gaps = 197/562 (35%)
Query: 317 CKLENVPDTLGQVESLEELDI------SETAVRR--------PPSSV------------- 349
CK +V D + S EE+D + + R V
Sbjct: 35 CK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 350 FLMKNLR---------TLSFSGC-----NGPPSSASWHL-----------HLPFNL---- 380
FLM ++ T + N A +++ L L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAK 151
Query: 381 ------M---GKSSCLVALMLPSLSGLRSLTKLDLSDCG-----LGEGAIPSDIGNLHSL 426
+ GK + + S D L P + L L
Sbjct: 152 NVLIDGVLGSGK-TWVAL------DVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEML 202
Query: 427 NELY--LSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP-----------PNII-- 471
+L + N S N L + ++ E +RL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 472 FVKVNGCSSLVT-----------------------------------LLGALKL------ 490
F C L+T LL L
Sbjct: 262 F--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 491 ---CKSNGIVIECI-DSLK--LLRNNGWAILMLREYLEAVS------DP------LKDFS 532
+N + I +S++ L + W + + + +P S
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 533 TVIP-GSKIPK------WF-MYQNEGSSITVT--RPSYLYNMNKIVGYAICCVFHVPRHS 582
V P + IP WF + +++ + + S + K +I ++ +
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 583 TRIKKRRH-----SYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWI 637
+ H Y + D D +SH G H L E +R +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HH-----LKNIEHPERMTL 492
Query: 638 FESNHFKLSFNDAREKYD-MAGSGTG--------LKVKR---CGFHPVYMHEVEELDQTT 685
F F + + ++D A + +G LK + C P Y E L
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY----ERLVNAI 548
Query: 686 KQWTHFTSYNLYESDHDFLDQI 707
+ NL S + L +I
Sbjct: 549 LDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 49/169 (28%)
Query: 12 KKYGSELVEGMIIDDYFFPVNEV--HLS----AKAFSLMTNLGLLKINNVQLLEGLEYLS 65
K + S+ + +D YF+ + + HL + +L + L +L
Sbjct: 457 KTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPERMTLFRMVFL----------DFRFLE 504
Query: 66 NKLRLLDWHRYPLKSLPSNLQ-LDK----IVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 120
K+R S+ + LQ L I + Y R+ +N +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL---------VNAILDFLPKI 555
Query: 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169
ENLI + T L + +L+ ++ IF E+ K +
Sbjct: 556 EENLICSK---------------YTDL--LRIALMAEDEAIFEEAHKQV 587
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249
+ L + +L S + L G+ ++ N+ SL + F L+ L LS ++
Sbjct: 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QIS 76
Query: 250 KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309
+ + L EL+++ + ++ +P L L N R S+ LK+L+
Sbjct: 77 DLSPL-KDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLE 131
Query: 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364
L++ KL+++ LG + LE LD+ + + +K + + +G
Sbjct: 132 ILSIRN-NKLKSIVM-LGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQK 183
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 36/189 (19%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 53 NNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNM 112
+V L + LS ++ + ++SL + E + +++I +L +K L
Sbjct: 29 QSVTDLVSQKELSG-VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-SPLKDLTK 86
Query: 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILS 172
L+ + ++ N +K + + L L+L+ +LR LI +++L+IL +
Sbjct: 87 LEELSVNR--NRLKNLNGIPSACLSRLFLDNN-ELRDTDS-------LIHLKNLEILSIR 136
Query: 173 GCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS 232
KL+ +G + L+ L L G +I + L + + L K ++
Sbjct: 137 NN-KLKSIVM-LGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQP 193
Query: 233 SFQCLRNLK 241
+K
Sbjct: 194 ELYITNTVK 202
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 3e-10
Identities = 51/278 (18%), Positives = 84/278 (30%), Gaps = 46/278 (16%)
Query: 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS------SLPVAISSFQCLRNLKLSGC 245
E LL D + + + L + + + L+ L L
Sbjct: 46 EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105
Query: 246 --SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIE-----LLPGLELLNLNDCKNFARV 298
+ P + T DL+ LNL S + + L PGL++L++ +
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165
Query: 299 PSSINGLKSLKTLNLSGCCKLENVPDT----LGQVESLEELDIS----ETAVRRPPSSVF 350
+ +L TL+LS +L + +L+ L + ET +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 351 LMKNLRTLSFSGCN----GPPSSASW-----HLHLPFNLMGKSSCLVALMLPSLSG--LR 399
L+ L S + S W L+L F L +
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-----------GLKQVPKGLPA 274
Query: 400 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437
L+ LDLS L L + L L N F+
Sbjct: 275 KLSVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 53/262 (20%), Positives = 88/262 (33%), Gaps = 30/262 (11%)
Query: 110 LNMLKVMKLSHSENLIKTPDFTEA------PNLEELYLEGCTKLRKVHPSLLLHNKLIFV 163
+ L + +L+ I + A L+EL LE P LL
Sbjct: 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP--- 121
Query: 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN 223
L IL L + + + L +K L ++ H +
Sbjct: 122 -DLNILNLRNVSWATRDAWLAELQQWL------KPGLKVLSIAQAHSLNFSCEQVRVFPA 174
Query: 224 LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLP 282
LS+L ++ + R L + C P T++ L+ N + + +
Sbjct: 175 LSTLDLSDNPELGERGLISALC------PLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 283 GLELLNLNDCKNFARVPSSIN--GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340
L+ L+L+ + + + L +LNLS L+ VP L L LD+S
Sbjct: 229 QLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLPA--KLSVLDLSYN 284
Query: 341 AVRRPPSSVFLMKNLRTLSFSG 362
+ R PS L + LS G
Sbjct: 285 RLDRNPSPDEL-PQVGNLSLKG 305
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 34/227 (14%)
Query: 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSI- 302
C +++ P + L L T + +PS + LP + + ++ ++ S
Sbjct: 20 CKDIQRIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 303 NGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVFL--MKNLRTLS 359
L + + + L + D L ++ L+ L I T ++ P + L
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136
Query: 360 FSGCNGPPSSASWHLH-LPFN-LMGKSSCLVALMLPS----------LSGLRSLTKLDLS 407
+ ++ +P N G + + L L + +G + L + L+
Sbjct: 137 ITDNP--------YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLN 187
Query: 408 DCGLGEGAIPSDI--GNLHSLNELYLSKNNFVTLPASINSLLNLKEL 452
I D G + L +S+ + LP+ L +LKEL
Sbjct: 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 60/248 (24%)
Query: 121 SENLIKT---PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL 177
E ++T F+ PN+ +Y+ L+++ + + + + L
Sbjct: 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-----KVTHIEIRNTRNL 93
Query: 178 RKFPHVV-GSMECLQELLLDGTDIKELP--LSIEHLFGLVQLTLNDCKNLSSLPVAISSF 234
+ L+ L + T +K P + L + D ++S+PV ++F
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAF 151
Query: 235 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294
Q L N L L T V
Sbjct: 152 QGLCNE--------------------TLTLKLYNNGFTSVQ------------------- 172
Query: 295 FARVPSSINGLKSLKTLNLSGCCKLENVPDTL--GQVESLEELDISETAVRRPPSSVFL- 351
+ NG K L + L+ L + G LD+S+T+V PS
Sbjct: 173 ----GYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Query: 352 MKNLRTLS 359
+K L +
Sbjct: 228 LKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 76/233 (32%)
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGCCK 318
+ + I +PS L P + L L + +PS + + L ++ + +S
Sbjct: 12 QEEDFRVTCKDIQRIPS---LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 319 LENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLP 377
L+ + + + + ++I T +NL + A
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNT------------RNLTYI--------DPDA------- 100
Query: 378 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL----------- 426
L L L L + + GL + + +
Sbjct: 101 -----------------LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143
Query: 427 ---------------NELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464
L L N F ++ + L + + K L +
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 9e-10
Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 35/215 (16%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCC 317
L+L + + S P L++L+L+ C+ + L L TL L+G
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN- 86
Query: 318 KLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHL 376
++++ + SL++L ET + + +L+TL L++
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTL-------------KELNV 131
Query: 377 PFNLMGKSSCLVALMLPSL-SGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSL----NELY 430
NL + + LP S L +L LDLS + +I LH + L
Sbjct: 132 AHNL------IQSFKLPEYFSNLTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLNLSLD 183
Query: 431 LSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465
LS N + + LKEL ++ + L+ +P
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD 217
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 52/251 (20%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248
+ L L ++ L L L L+ C+ + ++ +Q L +L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA--YQSLSHLS------- 79
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLK 306
L L G I + L L+ L + A + + LK
Sbjct: 80 --------------TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124
Query: 307 SLKTLNLSGCCKLENVP--DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364
+LK LN++ +++ + + +LE LD+S ++ + + L +
Sbjct: 125 TLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLL--- 178
Query: 365 GPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI-GNL 423
+ L L N + + + +R L +L L L ++P I L
Sbjct: 179 ------NLSLDLSLN------PMNFIQPGAFKEIR-LKELALDTNQLK--SVPDGIFDRL 223
Query: 424 HSLNELYLSKN 434
SL +++L N
Sbjct: 224 TSLQKIWLHTN 234
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 56/241 (23%)
Query: 220 DC--KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277
+C +NL++LP + + L LS + L++LNLD +T++
Sbjct: 16 NCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELD 336
L P L L+L+ + +P L +L L++S +L ++P L + L+EL
Sbjct: 74 GTL-PVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130
Query: 337 ISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS 396
+ ++ P + +
Sbjct: 131 LKGNELKTLPPGLL---------------------------------------------T 145
Query: 397 GLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASINSLLNLKELEME 455
L KL L++ L +P+ + L +L+ L L +N+ T+P L +
Sbjct: 146 PTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 456 D 456
Sbjct: 204 G 204
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
+ L+L L + L+ L L L +L K V G++ L L
Sbjct: 31 KDTTILHLSE-NLLYTFSLATLMP-----YTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTL 82
Query: 194 LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK---LSGCSKLKK 250
L ++ LPL + L L L ++ + L+SLP+ + L L+ L G ++LK
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA--LRGLGELQELYLKG-NELKT 138
Query: 251 FPQIV-TTMEDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSL 308
P + T L +L+L ++TE+P+ + L L+ L L + + +P G L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLL 197
Query: 309 KTLNLSG 315
L G
Sbjct: 198 PFAFLHG 204
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 32/174 (18%)
Query: 190 LQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248
L L + L+ L QL L+ + L+ L V L L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV----DGTLPVLG------- 80
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI-NGLKS 307
L+L + +P + LP L +L+++ + +P GL
Sbjct: 81 --------------TLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE 125
Query: 308 LKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVFL-MKNLRTLS 359
L+ L L G +L+ +P L LE+L ++ + P+ + ++NL TL
Sbjct: 126 LQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELE 453
+L LT+L+L L + D G L L L LS N +LP +L L L+
Sbjct: 50 TLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 454 MEDCKRLQFLP 464
+ + L LP
Sbjct: 107 VSFNR-LTSLP 116
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 39/280 (13%)
Query: 220 DCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITE--VPS 276
D + P + P + + ++L + I +
Sbjct: 53 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112
Query: 277 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES----L 332
+ L+ L+L + + +++ +L LNLSGC L + S L
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRL 170
Query: 333 EELDISE----TAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388
+EL++S T + + + + L+ SG + L
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD---------------LS 215
Query: 389 ALMLPSLSGLRSLTKLDLSDC-GLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSL- 446
L + +L LDLSD L L+ L L LS+ + P ++ L
Sbjct: 216 TL----VRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDII-PETLLELG 269
Query: 447 --LNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTL 484
LK L++ L L + +++N CS T+
Sbjct: 270 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN-CSHFTTI 308
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 45/202 (22%), Positives = 69/202 (34%), Gaps = 27/202 (13%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL--RKFPHVVGS-MECL 190
NL L L GC+ + LL + L L LS C + V E +
Sbjct: 142 SNLVRLNLSGCSGFSEFALQTLLSS----CSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197
Query: 191 QELLLDG-----TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSG 244
+L L G +L + LV L L+D L + L++L LS
Sbjct: 198 TQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256
Query: 245 CSKLK-KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF-------- 295
C + + + + L L + G + + + L L L +N C +F
Sbjct: 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDG-TLQLLKEALPHLQIN-CSHFTTIARPTI 313
Query: 296 -ARVPSSINGLKSLKTLNLSGC 316
+ I G+K TL C
Sbjct: 314 GNKKNQEIWGIKCRLTLQKPSC 335
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 47/220 (21%), Positives = 74/220 (33%), Gaps = 41/220 (18%)
Query: 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI--NGLKSLKTLNLSGCCKL 319
+ L+ + VP S+ LL+L+ N +R+ + L +L +L LS L
Sbjct: 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HL 76
Query: 320 ENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPF 378
+ + V +L LD+S + +F +L+ L L L
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF--SDLQALE-------------VLLLYN 121
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL---GEGAIPSDIGNLHSLNELYLSKNN 435
N +V + + + L KL LS + I D L L L LS N
Sbjct: 122 NH------IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNK 174
Query: 436 FVTLPA-SINSLLNLKELEME--------DCKRLQFLPQL 466
LP + L + + DCK Q
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHW 214
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 31/165 (18%)
Query: 129 DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSM 187
T NL L L L + + V +L+ L LS L + +
Sbjct: 59 TPTRLTNLHSLLLSHN-HLNFISSEAFVP-----VPNLRYLDLSSN-HLHTLDEFLFSDL 111
Query: 188 ECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 246
+ L+ LLL I + + E + L +L L+ + +S PV + L
Sbjct: 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV--ELIKDGNKLP----- 163
Query: 247 KLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLN 290
L L+L + ++P + ++ LP L
Sbjct: 164 -------------KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 58/320 (18%), Positives = 92/320 (28%), Gaps = 62/320 (19%)
Query: 188 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG--- 244
ELL + + L LT CK++SS A+ L L L
Sbjct: 18 ARWAELLPLLQQCQVVRLDD------CGLTEARCKDISS---ALRVNPALAELNLRSNEL 68
Query: 245 --------CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDC---- 292
L+ + + L L G + S++ LP L+ L+L+D
Sbjct: 69 GDVGVHCVLQGLQTPSCKIQKL-SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127
Query: 293 ---KNFARVPSSINGLKSLKTLNLSGCCK----LENVPDTLGQVESLEELDISETAVRRP 345
+ L+ L L C E + L +EL +S +
Sbjct: 128 AGLQLLCEGLLDPQ--CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185
Query: 346 PSSVFL------MKNLRTLSFSGCNGPPSSASW------------HLHLPFNLMGKSSCL 387
V L L C + L L N +G +
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-DVGM 244
Query: 388 VALMLPSLSGLRSLTKLDLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNF------VT 438
L L L L + +CG+ G + + SL EL L+ N +
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304
Query: 439 LPASINSLLNLKELEMEDCK 458
+ L+ L ++ C
Sbjct: 305 CETLLEPGCQLESLWVKSCS 324
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 48/264 (18%)
Query: 213 LVQLTLNDCK-NLSSLPVAISSFQCLRNLKLSGCS----KLKKFPQIVTTMEDLSELNLD 267
+ L + + + + + Q + ++L C + K + L+ELNL
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 268 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC----KLENVP 323
+ + + + L+ L CK ++ L+L CC +
Sbjct: 65 SNELGD--VGVHCV--LQGLQTPSCK--------------IQKLSLQNCCLTGAGCGVLS 106
Query: 324 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383
TL + +L+EL +S+ + + L P L L + +
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD----------PQCRLEKLQLEYCSLSA 156
Query: 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI----PSDIGNLHSLNELYLSKNNF--- 436
+SC + L +L +S+ + E + + L L L
Sbjct: 157 ASC--EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214
Query: 437 --VTLPASINSLLNLKELEMEDCK 458
L + S +L+EL + K
Sbjct: 215 NCRDLCGIVASKASLRELALGSNK 238
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 51/211 (24%)
Query: 253 QIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 312
+ T E + EL+ I ++ +++ L + L L+ N SS++G+++L+ L+
Sbjct: 20 VVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALS--TNNIEKISSLSGMENLRILS 76
Query: 313 LSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASW 372
L ++ + + ++LEEL IS +
Sbjct: 77 LG-RNLIKKIENLDAVADTLEELWISYNQIAS---------------------------- 107
Query: 373 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 432
L + L +L L +S+ + + L L +L L+
Sbjct: 108 -------------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148
Query: 433 KNNFVTLPASINSLLNLKELEMEDCKRLQFL 463
N N+ + ++ L+ L
Sbjct: 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCK-----NLSSLPVAISSFQCLRNLKLSGCS 246
EL I+++ ++ L L L+ +LS + LR L L
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME-------NLRILSLGRN- 80
Query: 247 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSIN--- 303
+KK + + L EL + I + S IE L L +L +++ N I+
Sbjct: 81 LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN--NKITNWGEIDKLA 137
Query: 304 GLKSLKTLNLSG 315
L L+ L L+G
Sbjct: 138 ALDKLEDLLLAG 149
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Query: 237 LRNLKLS-GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF 295
++L ++K ++T++ L L +I ++ SS+ + L +L+L
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRN-LI 82
Query: 296 ARVPSSINGLKSLKTLNLSGCC--KLENVPDTLGQVESLEELDISETAVRRPPSSVFL-- 351
++ + +L+ L +S L + ++ +L L +S + L
Sbjct: 83 KKIENLDAVADTLEELWISYNQIASLSG----IEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 352 MKNLRTLSFSG 362
+ L L +G
Sbjct: 139 LDKLEDLLLAG 149
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 61/272 (22%)
Query: 205 LSIEHL-FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS----KLKKFPQIVTTME 259
SIE L +T D K++ + + ++ + LSG + + + + + +
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFA---VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS----- 314
DL V E+ L LL ++ L T+ LS
Sbjct: 61 DLEIAEFSDIFTGRVKD--EIPEALRLLL-----------QALLKCPKLHTVRLSDNAFG 107
Query: 315 --GCCKLENVPDTLGQVESLEELDISE------------TAVRRPPSSVFLMKN--LRTL 358
L + L + LE L + A++ + LR++
Sbjct: 108 PTAQEPLIDF---LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164
Query: 359 SFSGCN-GPPSSASW-----------HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 406
S W + + N + L+ L+ + L LDL
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDL 223
Query: 407 SDCGLG-EGA--IPSDIGNLHSLNELYLSKNN 435
D G+ + + + +L EL L+
Sbjct: 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 52/288 (18%), Positives = 87/288 (30%), Gaps = 68/288 (23%)
Query: 186 SMECLQELLLDGTDI-----KELPLSIEHLFGLVQLTLNDC----------KNLSSLPVA 230
+ ++E++L G I + L +I L +D + L L A
Sbjct: 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89
Query: 231 ISSFQCLRNLKLS-------GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPG 283
+ L ++LS L F T L L L + + ++
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP---LEHLYLHNNGLGPQ-AGAKIARA 145
Query: 284 LELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-----DTLGQVESLEELDIS 338
L+ L +N L+++ +LEN T L + +
Sbjct: 146 LQELAVN---------KKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMV 195
Query: 339 ETAVRRPPSSVFL---MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL-VALMLPS 394
+ +R L + + L L L N +A+ L S
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELK-------------VLDLQDNTFTHLGSSALAIALKS 242
Query: 395 LSGLRSLTKLDLSDCGLG-EGAIP-----SDIGNLHSLNELYLSKNNF 436
+L +L L+DC L GA S + N+ L L L N
Sbjct: 243 W---PNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEI 286
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 270 SITEVPSSIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGCCKLENV-PDTLG 327
+ + L L + + ++ + + GL L+ L + L V PD
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH 77
Query: 328 QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSG 362
L L++S A+ +L+ L SG
Sbjct: 78 FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 25/124 (20%), Positives = 35/124 (28%), Gaps = 24/124 (19%)
Query: 334 ELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393
L + + +NL L L L L
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQH---------------------LQHLELR 50
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASINSLLNLKEL 452
L GL L L + GL + D L+ L LS N +L L+L+EL
Sbjct: 51 DLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108
Query: 453 EMED 456
+
Sbjct: 109 VLSG 112
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 20/143 (13%)
Query: 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTT 257
D LP + + + D +S + Q + ++L C
Sbjct: 48 KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----------- 96
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF-ARVPSSINGLKSLKTLNLSGC 316
++ + + L + + + C N + +++ ++LK L LS
Sbjct: 97 -------YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149
Query: 317 CKLENVPDT-LGQVESLEELDIS 338
++ SL L++
Sbjct: 150 PGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 283 GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK-----LENVPDTLGQVESLEELD- 336
++ ++ D + + GL+ ++ + L C LE + +S+ E++
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 337 -----ISETAVRRPPSSVFLMKNLRTLSFSGCNG 365
+++ + ++ +NL+ L S G
Sbjct: 122 ISCGNVTDKGI----IALHHFRNLKYLFLSDLPG 151
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 24/132 (18%)
Query: 233 SFQCLRNLKLSGC-SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 291
+ +R L L C S K + +L L+L + V S++ LP L+ L L++
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE 80
Query: 292 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL 351
+ F + L +L LNLSG N + +E L++L
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSG-----NKLKDISTLEPLKKL---------------- 119
Query: 352 MKNLRTLSFSGC 363
+ L++L C
Sbjct: 120 -ECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 164 ESLKILILSGC-LKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCK 222
+++ L+L C K + L+ L L + + ++ L L +L L++ +
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENR 82
Query: 223 NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEVP----S 276
L + L +L LSG KLK + +E L L+L +T + S
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141
Query: 277 SIELLPGLELLNLND 291
+LLP L L+ D
Sbjct: 142 VFKLLPQLTYLDGYD 156
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 24/132 (18%)
Query: 233 SFQCLRNLKLSGC-SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 291
+ ++ L L S K + E+L L+ +T + +++ L L+ L L+D
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73
Query: 292 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL 351
+ + +L LNLSG N L +E L++L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSG-----NKIKDLSTIEPLKKL---------------- 112
Query: 352 MKNLRTLSFSGC 363
+NL++L C
Sbjct: 113 -ENLKSLDLFNC 123
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 396 SGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELE 453
L++L L ++D L A+P + L +L EL L +N +LP + +SL L L
Sbjct: 82 KELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 454 MEDCKRLQFLP 464
+ + LQ LP
Sbjct: 140 LGYNE-LQSLP 149
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 44/212 (20%)
Query: 260 DLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCC 317
D +L+L ++ +PS L L LL LND +P+ I LK+L+TL ++
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN- 95
Query: 318 KLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHL 376
KL+ +P Q+ +L EL + ++ P VF +L L+ +L L
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLT-------------YLSL 140
Query: 377 PFNLMGKSSCLVALMLPSLS-----GLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELY 430
+N L SL L SL +L L + L +P L L L
Sbjct: 141 GYN-----------ELQSLPKGVFDKLTSLKELRLYNNQLK--RVPEGAFDKLTELKTLK 187
Query: 431 LSKNNFVTLPASI-NSLLNLKELEME----DC 457
L N +P +SL LK L+++ DC
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317
EL+L G I + + L + ++ +D N R L+ LKTL ++
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD--NEIRKLDGFPLLRRLKTLLVNN-N 74
Query: 318 KLENVPDTLGQ-VESLEELDISETAVRRPPSSVFL--MKNLRTLSFSGC 363
++ + + L Q + L EL ++ ++ L +K+L L
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 1e-04
Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 19/218 (8%)
Query: 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308
+KF + S E +L + LLN K + +L
Sbjct: 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL 195
Query: 309 KTLNLSGCCKLENVPDTLGQVE--SLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 366
K+L + ++V + + + +LE+L + M R L +
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVFRPL----FSKD 249
Query: 367 PSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNL 423
L + + +V M L L +D+S L + + + +
Sbjct: 250 RFPNLKWLGIVDA---EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306
Query: 424 HSLNELYLSKNNF-----VTLPASINSLLNLKELEMED 456
L + + N L S+ +++ + + D
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYD 344
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 394 SLSGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKE 451
+ S + L ++DLS+ + + D L SLN L L N LP S+ L +L+
Sbjct: 51 AFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 452 LEMEDCKRLQFLP 464
L + + ++ L
Sbjct: 109 LLL-NANKINCLR 120
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 396 SGLRSLTKLDLSDCGLGEGAIPSDI-GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELE 453
L L K++ S+ + I +NE+ L+ N + + L +LK L
Sbjct: 54 KKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 454 MEDCKRLQFLP 464
+ + + +
Sbjct: 112 LRSNR-ITCVG 121
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.98 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.95 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.95 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.94 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.94 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.93 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.91 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.91 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.91 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.91 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.91 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.89 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.89 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.89 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.89 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.88 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.88 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.86 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.85 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.85 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.83 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.83 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.82 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.82 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.81 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.81 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.8 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.8 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.8 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.79 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.78 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.77 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.76 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.75 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.73 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.73 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.71 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.71 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.65 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.64 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.6 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.6 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.58 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.56 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.56 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.56 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.56 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.55 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.54 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.47 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.44 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.41 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.41 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.4 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.4 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.38 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.37 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.33 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.32 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.31 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.3 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.28 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.27 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.27 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.27 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.23 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.2 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.17 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.12 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.11 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.02 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.02 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.01 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.86 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.83 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.76 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.73 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.72 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.69 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.61 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.56 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.56 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.52 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.89 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.84 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.7 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.67 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.64 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.41 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.67 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.57 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.46 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.36 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=401.16 Aligned_cols=460 Identities=19% Similarity=0.171 Sum_probs=331.5
Q ss_pred hcCCCCcceEEecCccccCccc-ccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCcc-ccccccccccCCcEEE
Q 005207 41 FSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIE-ELWKGIKHLNMLKVMK 117 (709)
Q Consensus 41 f~~l~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 117 (709)
+.++++|+.|++++|.+.+... .-..+|++|++++|.+...+..+ .+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 6677777777777777664322 11258888899888887644445 7888999999999888 5667788888888888
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccc-cc------------------cccCCCccEEEccCCCCCC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH-NK------------------LIFVESLKILILSGCLKLR 178 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l-~~------------------L~~l~~L~~L~Ls~~~~~~ 178 (709)
|++|++....|.. .+++|++|++++|.....+|..++.. .+ +..+++|++|++++|.+.+
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 8888776555544 66666666666664333455444332 21 2234677777777777776
Q ss_pred cCCcc-ccCCCccceeeccCCCcc-ccCcccccCC-C--------------------------CcEEecCCCCCCCcCcc
Q 005207 179 KFPHV-VGSMECLQELLLDGTDIK-ELPLSIEHLF-G--------------------------LVQLTLNDCKNLSSLPV 229 (709)
Q Consensus 179 ~~~~~-l~~l~~L~~L~l~~~~i~-~lp~~l~~l~-~--------------------------L~~L~L~~~~~l~~lp~ 229 (709)
.+|.. +..+++|++|++++|.+. .+|..+..+. + |+.|++++|...+.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 66654 777777777777777776 5666555544 4 55555555544445666
Q ss_pred cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
.+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 7777788888888888777777888888888888888888887 667778888888888888888888888888888888
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccc--------
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFN-------- 379 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------- 379 (709)
++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.........
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 88888888888888888888888888888888887 778888888888888888887543322211100000
Q ss_pred -----------------------cc-----------------cCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCC
Q 005207 380 -----------------------LM-----------------GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419 (709)
Q Consensus 380 -----------------------~~-----------------~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~ 419 (709)
.. .......+...+.+..+++|+.|+|++|+++ +.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHH
Confidence 00 0001122233345788999999999999996 789999
Q ss_pred CCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCCC---CCCccEEEecCCCCcceecCccccccccC
Q 005207 420 IGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLGALKLCKSNG 495 (709)
Q Consensus 420 l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~~~~l~~ 495 (709)
++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+....+|.. .++|++|++++++--..++....+..+..
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 999999999999999999 89999999999999999999877788753 25789999998865455554433333333
Q ss_pred ccccccc
Q 005207 496 IVIECID 502 (709)
Q Consensus 496 l~~~~c~ 502 (709)
..|..++
T Consensus 732 ~~~~gN~ 738 (768)
T 3rgz_A 732 AKFLNNP 738 (768)
T ss_dssp GGGCSCT
T ss_pred HHhcCCc
Confidence 3344433
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=399.21 Aligned_cols=414 Identities=24% Similarity=0.280 Sum_probs=304.1
Q ss_pred hhhcCCCCcceEEecCccccCcccc-cCcCccEEEeeCCCCC-CCCCcC-C-cCCceEEEcccCCcc-ccccccccccCC
Q 005207 39 KAFSLMTNLGLLKINNVQLLEGLEY-LSNKLRLLDWHRYPLK-SLPSNL-Q-LDKIVEFKMCYSRIE-ELWKGIKHLNML 113 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~~~~~-l~~~L~~L~l~~~~l~-~lp~~~-~-l~~L~~L~Ls~n~i~-~l~~~~~~l~~L 113 (709)
.+|.++++|+.|++++|.+.+.+.. ..++|++|++++|.++ .+|..+ . +++|++|++++|+++ .+|..+..+++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 3444444444444444443321111 1134555555555544 444444 2 355666666665555 344555566666
Q ss_pred cEEEcCCCCCCCCCC-C-CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccC--CCc
Q 005207 114 KVMKLSHSENLIKTP-D-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS--MEC 189 (709)
Q Consensus 114 ~~L~Ls~~~~~~~~~-~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~--l~~ 189 (709)
++|+|++|++....| . +..+++|++|++++|.....+|..+..+. ++|++|++++|.+.+.+|..+.. +++
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-----~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT-----TTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh-----cCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 666666665543333 2 55566666666666533334444443321 27888888888887777777666 788
Q ss_pred cceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 190 LQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 190 L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..++++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 999999999888 7888899999999999999888888888899999999999999999888999999999999999999
Q ss_pred ccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCC
Q 005207 269 TSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPP 346 (709)
Q Consensus 269 ~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~ 346 (709)
|.+. .+|..+..+++|+.|++++|.+.+.+|.+++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 9998 67888899999999999999998899999999999999999999998899999999999999999999887 566
Q ss_pred ccccc----------------------------------------------------------------------ccCCc
Q 005207 347 SSVFL----------------------------------------------------------------------MKNLR 356 (709)
Q Consensus 347 ~~~~~----------------------------------------------------------------------l~~L~ 356 (709)
..++. +++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 55443 34455
Q ss_pred EEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 005207 357 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435 (709)
Q Consensus 357 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 435 (709)
.|++++|+... .+|. ++.+++|+.|+|++|+++ +.+|..++.+++|+.|+|++|+
T Consensus 636 ~LdLs~N~l~g-----------------------~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSYNMLSG-----------------------YIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCSSCCBS-----------------------CCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccc-----------------------cCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCc
Confidence 55555554221 2333 889999999999999996 8899999999999999999999
Q ss_pred Cc-ccChhhhcCCCcCeeccccccccccCCCCC--CCccEEEecCCCCc
Q 005207 436 FV-TLPASINSLLNLKELEMEDCKRLQFLPQLP--PNIIFVKVNGCSSL 481 (709)
Q Consensus 436 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i~~C~~L 481 (709)
++ .+|..+..+++|+.|+|++|+....+|... .++....+.+++.|
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99 899999999999999999999888888642 23333344455443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=374.17 Aligned_cols=335 Identities=18% Similarity=0.194 Sum_probs=214.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|++|++++|.+.+ .+..+ .+|++|++++|.++.++. .+ .+++|
T Consensus 33 ~~l~~L~Ls~n-~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFN-V---LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTC-C---CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCC-c---cCcCChhHhccCccceEEECCCCccceeChhhccCc-cccCeeeCCCCcccccChhhhcccccc
Confidence 45777777777 4 446778899999999999999998753 34455 599999999999988754 45 89999
Q ss_pred eEEEcccCCcccc-ccccccccCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccCCcccccc-CcccccccccccCCCcc
Q 005207 91 VEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLK 167 (709)
Q Consensus 91 ~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~ 167 (709)
++|++++|+++.+ +..+..+++|++|++++|++... .+.+..+++|++|++++|. +..+ +..++.+ ++|+
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l------~~L~ 180 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL------QQAT 180 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT------TTCC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh------cccc
Confidence 9999999999987 57799999999999999998774 4677779999999999984 4444 3334433 3333
Q ss_pred --EEEccCCCCCCcCCccccC-------------------------------------------------C--Cccceee
Q 005207 168 --ILILSGCLKLRKFPHVVGS-------------------------------------------------M--ECLQELL 194 (709)
Q Consensus 168 --~L~Ls~~~~~~~~~~~l~~-------------------------------------------------l--~~L~~L~ 194 (709)
.|++++|.+.+..|..+.. + .+|+.|+
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 4455554444333322211 0 0455555
Q ss_pred ccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-
Q 005207 195 LDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT- 272 (709)
Q Consensus 195 l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~- 272 (709)
+++|.+..++.. +..+++|+.|++++|. +..+|..+.++++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 555555554433 5555666666666553 3355555555666666666666555555555556666666666666554
Q ss_pred ccCcc-cCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--c
Q 005207 273 EVPSS-IELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--S 347 (709)
Q Consensus 273 ~l~~~-~~~l~~L~~L~L~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~ 347 (709)
.++.. +..+++|+.|++++|.+.+.. +..+..+++|++|++++|...+..+..+..+++|+.|++++|.+...+ .
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 34332 555666666666665554443 445555666666666666555555555555666666666666555332 2
Q ss_pred ccccccCCcEEEccCCC
Q 005207 348 SVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 348 ~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.
T Consensus 420 ~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTCTTCCEEECTTCC
T ss_pred hhhCcccCCEEECCCCc
Confidence 24555666666666555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.11 Aligned_cols=425 Identities=21% Similarity=0.229 Sum_probs=350.2
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCC-CCcC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSL-PSNL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|+.|++++|.+.+. +..+ ++|++|++++|.++.+ |..+ .+++|
T Consensus 32 ~~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFN-P---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTS-C---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCC-C---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccC
Confidence 56788888777 3 4567778999999999999999987642 3444 5999999999999998 5566 89999
Q ss_pred eEEEcccCCccccc-cccccccCCcEEEcCCCCCCC-C-CCCCCCCCCccEEeccCCcccccc-Cccccccccccc----
Q 005207 91 VEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLI-K-TPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~---- 162 (709)
++|++++|.++.++ ..+..+++|++|++++|.+.. . +..++++++|++|++++|. +..+ +..++.+.+++.
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccce
Confidence 99999999999887 679999999999999999875 3 3459999999999999984 4444 444544443321
Q ss_pred -----------------CCCccEEEccCCCCC------------------------------------------------
Q 005207 163 -----------------VESLKILILSGCLKL------------------------------------------------ 177 (709)
Q Consensus 163 -----------------l~~L~~L~Ls~~~~~------------------------------------------------ 177 (709)
..+|+.|++++|.+.
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 136778888777542
Q ss_pred ----------CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 178 ----------RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 178 ----------~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
+..|. +..+++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|..
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSS
T ss_pred eeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcC
Confidence 12222 566789999999999999999 899999999999999887 88884 6 899999999999976
Q ss_pred CCcCchhhccCCCCCeeeccCccCccc---CcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC-
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEV---PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP- 323 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~- 323 (709)
.... .+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+. .+|..+..+++|++|++++|...+..+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccCh
Confidence 6544 567899999999999999866 778899999999999999854 467888999999999999999888777
Q ss_pred ccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCCCCCCC
Q 005207 324 DTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLSGLRSL 401 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~~l~~L 401 (709)
..+..+++|+.|++++|.+.. .|..+..+++|++|++++|.... ..+| .+..+++|
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~l~~L 475 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD----------------------NTLSNVFANTTNL 475 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------------------GEECSCCTTCTTC
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC----------------------cchHHhhccCCCC
Confidence 688899999999999999985 56778889999999999987321 1122 27889999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCC----CCCCccEEEec
Q 005207 402 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVN 476 (709)
Q Consensus 402 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~ 476 (709)
+.|++++|++. +..|..+..+++|++|++++|+++.+ |..+..+++|+.|+|++|+ ++.+|. +|.+|+.|+++
T Consensus 476 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 476 TFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEcc
Confidence 99999999996 66788899999999999999999966 7789999999999999996 667775 55678888888
Q ss_pred CCC
Q 005207 477 GCS 479 (709)
Q Consensus 477 ~C~ 479 (709)
+++
T Consensus 554 ~N~ 556 (606)
T 3vq2_A 554 NNS 556 (606)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=375.79 Aligned_cols=424 Identities=15% Similarity=0.190 Sum_probs=277.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc--c-------ccC----cCccEEEeeCCCCCC-CC
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL--E-------YLS----NKLRLLDWHRYPLKS-LP 82 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~--~-------~l~----~~L~~L~l~~~~l~~-lp 82 (709)
.+|++|.|... .. ...++ .+|.++++|+.|++++|.+..+. . .+| ..|| ++++.+.+.. +|
T Consensus 81 ~~V~~L~L~~~-~l--~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGF-GA--SGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTS-CC--EEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCc-cc--CCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCch
Confidence 46888888777 54 45565 79999999999999999752110 0 011 1222 2222222111 11
Q ss_pred CcC--------------------CcCCceEEEc--ccCCccccccccccccCCcEEEcCCCCCCC---------------
Q 005207 83 SNL--------------------QLDKIVEFKM--CYSRIEELWKGIKHLNMLKVMKLSHSENLI--------------- 125 (709)
Q Consensus 83 ~~~--------------------~l~~L~~L~L--s~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~--------------- 125 (709)
..+ ....++.+.+ .+|+++.+|..+.++++|++|+|++|.+..
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 110 0011111111 145566666667777777777777777665
Q ss_pred ---CCCCCC--CCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC-CCC-cCCccccCC------Cccce
Q 005207 126 ---KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSM------ECLQE 192 (709)
Q Consensus 126 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~-~~~-~~~~~l~~l------~~L~~ 192 (709)
.++.++ ++++|++|++++|.....+|..++. +++|++|++++|. +.+ .+|..++.+ ++|++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 344566 6777777777776555566655444 4566677777776 555 566666554 77777
Q ss_pred eeccCCCccccCc--ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC-CCeeeccCc
Q 005207 193 LLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGT 269 (709)
Q Consensus 193 L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~~~ 269 (709)
|++++|.++.+|. .++.+++|+.|++++|...+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 7777777777777 67777777777777766655667 6777777777777777665 66666777777 777777777
Q ss_pred cCcccCcccCCCC--CCCEEeccCCCCCcccccccc-------CCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 270 SITEVPSSIELLP--GLELLNLNDCKNFARVPSSIN-------GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 270 ~i~~l~~~~~~l~--~L~~L~L~~~~~~~~l~~~~~-------~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.++.+|..+...+ +|+.|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 7777777665544 777788877777777777666 6677788888877766333333455777888888888
Q ss_pred ccccCCccccccc--------CCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CC--CCCCCCEEeccCC
Q 005207 341 AVRRPPSSVFLMK--------NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LS--GLRSLTKLDLSDC 409 (709)
Q Consensus 341 ~i~~l~~~~~~l~--------~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~--~l~~L~~L~Ls~n 409 (709)
.++.+|....... +|++|++++|.... +|. +. .+++|+.|+|++|
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK------------------------LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB------------------------CCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCCc------------------------cChhhhhccCCCcCEEECCCC
Confidence 7777776554422 78888888776431 122 33 6778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEEcCC------CCCc-ccChhhhcCCCcCeeccccccccccCCC-CCCCccEEEecCCCC
Q 005207 410 GLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSS 480 (709)
Q Consensus 410 ~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~~ 480 (709)
++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|.. +.+|. ++++|+.|++++++-
T Consensus 524 ~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 524 SFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred CCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 8753 777777788888888843 4444 6777777888888888888865 77775 567788888887753
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=370.90 Aligned_cols=422 Identities=16% Similarity=0.213 Sum_probs=281.4
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEe-cCccccCcccccCcCc------------cE------E------
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI-NNVQLLEGLEYLSNKL------------RL------L------ 71 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l-~~~~l~~~~~~l~~~L------------~~------L------ 71 (709)
.+|++|.|... .. ...++ .+|.++++|+.|++ ++|.+.+....-...+ |. +
T Consensus 323 ~~V~~L~Ls~~-~L--~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGF-GA--KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTT-CC--EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccC-CC--CCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 56888887777 54 45565 79999999999999 8887765411000000 00 0
Q ss_pred --------EeeCCC-CCCCCCcCCcCCceEEEccc--CCccccccccccccCCcEEEcCCCCCCC---------------
Q 005207 72 --------DWHRYP-LKSLPSNLQLDKIVEFKMCY--SRIEELWKGIKHLNMLKVMKLSHSENLI--------------- 125 (709)
Q Consensus 72 --------~l~~~~-l~~lp~~~~l~~L~~L~Ls~--n~i~~l~~~~~~l~~L~~L~Ls~~~~~~--------------- 125 (709)
.+..++ ...+. ......++.+.+.. |+++.+|..+.++++|+.|+|++|++..
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~-~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIK-KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCC-CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhhHHHHHHhhhCccccccc-cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 000000 00000 00122233333332 5666677777777777777777777666
Q ss_pred ---CCCCCC--CCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC-CCC-cCCccccCCC-------ccc
Q 005207 126 ---KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSME-------CLQ 191 (709)
Q Consensus 126 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~-~~~-~~~~~l~~l~-------~L~ 191 (709)
.++.++ ++++|++|+|++|.....+|..++. +++|++|++++|. +.+ .+|..++.++ +|+
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 344455 7777777777777656666655444 5667777777776 555 5665554443 777
Q ss_pred eeeccCCCccccCc--ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC-CCeeeccC
Q 005207 192 ELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDG 268 (709)
Q Consensus 192 ~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~~ 268 (709)
.|++++|.+..+|. .++++++|+.|++++|... .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|+|++
T Consensus 552 ~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred EEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 77777777777777 7777777888888776654 677 6777778888888877766 66777777777 88888888
Q ss_pred ccCcccCcccCCCCC--CCEEeccCCCCCcccccc---cc--CCCCCCEEEeeCcCCCccCCccc-cCCCccceeecccc
Q 005207 269 TSITEVPSSIELLPG--LELLNLNDCKNFARVPSS---IN--GLKSLKTLNLSGCCKLENVPDTL-GQVESLEELDISET 340 (709)
Q Consensus 269 ~~i~~l~~~~~~l~~--L~~L~L~~~~~~~~l~~~---~~--~l~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~L~~n 340 (709)
|.+..+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 887777776666544 888888888776655432 22 2347888888887766 445443 46778888888888
Q ss_pred ccccCCcccccc--------cCCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CC--CCCCCCEEeccCC
Q 005207 341 AVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LS--GLRSLTKLDLSDC 409 (709)
Q Consensus 341 ~i~~l~~~~~~l--------~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~--~l~~L~~L~Ls~n 409 (709)
.+..+|..+... ++|+.|+|++|+... +|. +. .+++|+.|+|++|
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~------------------------lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS------------------------LSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC------------------------CCGGGSTTTCTTCCEEECCSS
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCcc------------------------chHHhhhccCCCcCEEEeCCC
Confidence 888777665542 378888888876431 122 33 6778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEEcCC------CCCc-ccChhhhcCCCcCeeccccccccccCCC-CCCCccEEEecCCCC
Q 005207 410 GLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSS 480 (709)
Q Consensus 410 ~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~~ 480 (709)
++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|+. ..+|. ++++|+.|++++|+-
T Consensus 764 ~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred CCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 8853 777788888888888866 5544 6777888888888888888865 77776 667888888888873
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=348.07 Aligned_cols=383 Identities=20% Similarity=0.201 Sum_probs=274.9
Q ss_pred CcceEEecCccccC----cccccCcCccEEEeeCCCCCCCC-CcC-CcCCceEEEcccCCcccc-ccccccccCCcEEEc
Q 005207 46 NLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKL 118 (709)
Q Consensus 46 ~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~L 118 (709)
+++.|++++|.+.+ .+..+ ++|++|++++|.+..++ ..+ .+++|++|+|++|+++.+ |..+..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57888888887653 23344 47888888888887764 444 788888888888888766 467788888888888
Q ss_pred CCCCCCCCC-CCCCCCCCccEEeccCCccccccC-cccccccccccCCCccEEEccCCCCCCcCCccccCCCccc--eee
Q 005207 119 SHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ--ELL 194 (709)
Q Consensus 119 s~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~--~L~ 194 (709)
++|++.... ..++++++|++|++++|. +..++ +.+. .+++|++|++++|.+.+..+..++.+++|+ .|+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGF------PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTC------CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccCcccCCcchhccCCcccEEECCCCc-ccccCccccc------CCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 888776653 457788888888888873 44332 1111 257788888888888777777788888888 788
Q ss_pred ccCCCccccCcccccCCCCcEEecCCCCCCCcC--------------------------cccccCCc--cCcEEeeeCCC
Q 005207 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL--------------------------PVAISSFQ--CLRNLKLSGCS 246 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l--------------------------p~~l~~l~--~L~~L~Ls~~~ 246 (709)
+++|.+..++.......+|+.|++++|...... +..+..+. +|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 888888877766666677788887776421110 11122222 78899999998
Q ss_pred CCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-c
Q 005207 247 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-T 325 (709)
Q Consensus 247 ~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~ 325 (709)
+....+..+..+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.++. .
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 888888889999999999999999999999999999999999999998888888899999999999999988866654 4
Q ss_pred ccCCCccceeeccccccccC---CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 326 LGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 326 l~~l~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
++.+++|++|++++|.+..+ +..+..+++|++|++++|...... ...+..+++|+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~ 403 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK----------------------TEAFKECPQLE 403 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC----------------------TTTTTTCTTCS
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC----------------------HHHhcCCccCC
Confidence 88899999999999998865 567888999999999998743211 11144555555
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-ChhhhcCCCcCeecccccc
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCK 458 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 458 (709)
.|++++|++.....+..+..+++|++|++++|.+... |..+..+++|++|++++|+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555555554222233355555555555555555532 3344555555555555554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=349.34 Aligned_cols=473 Identities=18% Similarity=0.153 Sum_probs=288.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|+.|++++|.+.+. +..+ ++|++|++++|.++.+|.. + .+++|
T Consensus 25 ~~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHN-Q---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSS-C---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCC-C---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCC
Confidence 57888888877 4 3457778899999999999999987643 3344 5899999999999999974 5 89999
Q ss_pred eEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 91 VEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
++|++++|+++.++ ..+..+++|++|+|++|.+....+ .+.++++|++|++++|. +..+++..... ..+++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~---~~~~~L~~ 175 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI---FANSSLKK 175 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG---GTTCEESE
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc---cccccccE
Confidence 99999999999887 568999999999999998876655 47889999999999873 44443321110 11345555
Q ss_pred EEccCCCCCCcCCcc---------------------------------------------------ccCCCc--cceeec
Q 005207 169 LILSGCLKLRKFPHV---------------------------------------------------VGSMEC--LQELLL 195 (709)
Q Consensus 169 L~Ls~~~~~~~~~~~---------------------------------------------------l~~l~~--L~~L~l 195 (709)
|++++|.+.+..|.. +..++. |+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 666655555444443 333322 444444
Q ss_pred cCCCccccC-cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCC-----cCch----hhccCCCCCeee
Q 005207 196 DGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK-----KFPQ----IVTTMEDLSELN 265 (709)
Q Consensus 196 ~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-----~~~~----~~~~l~~L~~L~ 265 (709)
++|.+..++ ..+..+++|+.|++++|...+..|..+.++++|++|++++|.... .+|. .+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 444444332 234444444444444444443344444444444444444432211 1111 344455555555
Q ss_pred ccCccCcccCc-ccCCCCCCCEEeccCCCCCc-ccc-ccccC--CCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 266 LDGTSITEVPS-SIELLPGLELLNLNDCKNFA-RVP-SSING--LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 266 L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~l~-~~~~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
+++|.+..++. .+..+++|++|++++|.... .++ ..+.. .++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 55555554332 34555555555555543211 111 11111 134555555555555555666777777888888777
Q ss_pred ccc-cCC-cccccccCCcEEEccCCCCCCCCCccc-cccccccccCcc-ccc--cccCCCCCCCCCCCEEeccCCCCCCC
Q 005207 341 AVR-RPP-SSVFLMKNLRTLSFSGCNGPPSSASWH-LHLPFNLMGKSS-CLV--ALMLPSLSGLRSLTKLDLSDCGLGEG 414 (709)
Q Consensus 341 ~i~-~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~lp~l~~l~~L~~L~Ls~n~l~~~ 414 (709)
.+. .+| ..+..+++|++|++++|+......... ............ ... +.....+..+++|+.|++++|++. +
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~ 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-N 494 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-C
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-c
Confidence 776 344 456667777777777776322111100 000000000000 011 112233788899999999999986 5
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCcccCh---------hhhcCCCcCeeccccccccccCCC--C--CCCccEEEecCCCCc
Q 005207 415 AIPSDIGNLHSLNELYLSKNNFVTLPA---------SINSLLNLKELEMEDCKRLQFLPQ--L--PPNIIFVKVNGCSSL 481 (709)
Q Consensus 415 ~~~~~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L~L~~c~~L~~lp~--l--p~sL~~L~i~~C~~L 481 (709)
..+..+..+++|++|++++|+++.++. .+..+++|+.|++++|. ++.+|. + -++|+.|+++++ .|
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l 572 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NL 572 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CC
Confidence 556678899999999999999886532 26788999999999984 556664 2 257888888665 56
Q ss_pred ceecCcc--ccccccCcccccc
Q 005207 482 VTLLGAL--KLCKSNGIVIECI 501 (709)
Q Consensus 482 ~~l~~~~--~~~~l~~l~~~~c 501 (709)
+.++... ...+++.+++.++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCHhHhCCCCCCCEEECCCC
Confidence 6665432 3345555666554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=348.06 Aligned_cols=379 Identities=17% Similarity=0.126 Sum_probs=219.0
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~ 117 (709)
++|+.|++++|.+.+ .+..+ ++|++|++++|.++.++. .+ .+++|++|+|++|.++.+ |..+.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 678888888888653 23344 588888888888888754 44 788888888888888877 67788888888888
Q ss_pred cCCCCCCCCC-CCCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccc----
Q 005207 118 LSHSENLIKT-PDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ---- 191 (709)
Q Consensus 118 Ls~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~---- 191 (709)
|++|++.... ..++++++|++|++++|.... .+|..++. +++|++|++++|.+.+..+..++.+++|+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT------CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh------cCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 8888876665 358888888888888874322 34554444 67788888888888777777776666554
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCC-CcCccc----------------------------------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL-SSLPVA---------------------------------------- 230 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~---------------------------------------- 230 (709)
+|++++|.++.++.......+|+.|++++|... ...|..
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 688888888877776666667888888776543 112222
Q ss_pred ----------------ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 231 ----------------ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 231 ----------------l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+..+| .+ .+++|+.|++++|..
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSS
T ss_pred heeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcC
Confidence 2333444444444443321 22 3344444444444444444444 22 444444444444433
Q ss_pred CccccccccCCCCCCEEEeeCcCCCcc--CCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCcc
Q 005207 295 FARVPSSINGLKSLKTLNLSGCCKLEN--VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASW 372 (709)
Q Consensus 295 ~~~l~~~~~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 372 (709)
.+.. .+..+++|++|++++|...+. .+..+..+++|++|++++|.+..+|..+..+++|++|++++|......+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 416 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-- 416 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT--
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC--
Confidence 3222 233444555555554443332 2444444555555555555555555444555555555555554222111
Q ss_pred ccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc--cChhhhcCCCcC
Q 005207 373 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLK 450 (709)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~ 450 (709)
...+..+++|+.|++++|++. +..|..+..+++|++|++++|++.. +|..+..+++|+
T Consensus 417 -------------------~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 417 -------------------FSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp -------------------TTTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred -------------------hhhhhccccCCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 012444455555555555543 3344444455555555555555442 344444555555
Q ss_pred eecccccc
Q 005207 451 ELEMEDCK 458 (709)
Q Consensus 451 ~L~L~~c~ 458 (709)
.|++++|.
T Consensus 477 ~L~Ls~n~ 484 (606)
T 3vq2_A 477 FLDLSKCQ 484 (606)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 55555553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=347.64 Aligned_cols=441 Identities=19% Similarity=0.233 Sum_probs=314.6
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCCc-C-CcC
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLD 88 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~ 88 (709)
+...++.+.+..+ . ...+.+.+|.++++||.|++++|.+.+. +..+ .+|++|++++|.++.+|.. + .++
T Consensus 47 ~l~~L~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 47 RYSQLTSLDVGFN-T---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGTTCSEEECCSS-C---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred CCCcCcEEECCCC-c---cCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccC
Confidence 3457788887776 3 3456678899999999999999887642 3334 5899999999999888853 4 889
Q ss_pred CceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCC---CCCCCCccEEeccCCccccccC-ccccccccc---
Q 005207 89 KIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPD---FTEAPNLEELYLEGCTKLRKVH-PSLLLHNKL--- 160 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L--- 160 (709)
+|++|++++|.++.++ ..+..+++|++|++++|.+....+. +..+++|++|++++|. +..++ ..+..+..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 9999999999988664 5678899999999999887665542 3356788888888873 33332 222222111
Q ss_pred ------------------------------------------ccC--CCccEEEccCCCCCCcCCccccCCCccceeecc
Q 005207 161 ------------------------------------------IFV--ESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196 (709)
Q Consensus 161 ------------------------------------------~~l--~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~ 196 (709)
..+ ++|+.|++++|.+.+..|..++.+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 111 348899999998888888889999999999999
Q ss_pred CCCcccc-CcccccCCCCcEEecCCCCCCC-----cCcc----cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 197 GTDIKEL-PLSIEHLFGLVQLTLNDCKNLS-----SLPV----AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 197 ~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~-----~lp~----~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+|.+..+ |..+..+++|+.|++++|.... .+|. .+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 9988854 4567777777777777653221 2332 4566677777777777666655555555555555555
Q ss_pred c----------------------------CccCccc-CcccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCc
Q 005207 267 D----------------------------GTSITEV-PSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGC 316 (709)
Q Consensus 267 ~----------------------------~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~ 316 (709)
+ +|.+..+ |..+..+++|+.|++++|.+.+.+| ..+.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 4 4445543 4567889999999999999887666 67889999999999999
Q ss_pred CCCccCCccccCCCccceeeccccccc---cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC
Q 005207 317 CKLENVPDTLGQVESLEELDISETAVR---RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393 (709)
Q Consensus 317 ~~~~~~~~~l~~l~~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 393 (709)
...+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|......+ .
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~----------------------~ 498 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND----------------------D 498 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT----------------------T
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh----------------------h
Confidence 988777888888999999999998875 567788889999999999987442211 1
Q ss_pred CCCCCCCCCEEeccCCCCCC---CCCC----CCCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeeccccccccccCCC
Q 005207 394 SLSGLRSLTKLDLSDCGLGE---GAIP----SDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 394 ~l~~l~~L~~L~Ls~n~l~~---~~~~----~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
.+.++++|+.|++++|++.. ..+| ..+..+++|++|+|++|+++.+|. .+..+++|+.|++++| .++.+|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCH
Confidence 15667777777777777642 0111 236677777777777777777775 3677777777777777 3455553
Q ss_pred C----CCCccEEEecCCCCcceec
Q 005207 466 L----PPNIIFVKVNGCSSLVTLL 485 (709)
Q Consensus 466 l----p~sL~~L~i~~C~~L~~l~ 485 (709)
- .++|+.|+++++ .|+.+.
T Consensus 578 ~~~~~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCC
T ss_pred hHhCCCCCCCEEECCCC-cCCccC
Confidence 1 256777777776 455544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=356.38 Aligned_cols=349 Identities=16% Similarity=0.162 Sum_probs=288.5
Q ss_pred CCCCCCCCccEEeccCCccccc------------------cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 128 PDFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~~l~~------------------~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
+.+.++++|+.|+|++|. +.. +|..++ +..+++|++|++++|.+.+.+|..++++++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~----f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELS----WSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred HHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhh----hccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 358899999999999985 554 776654 113788999999999999999999999999
Q ss_pred cceeeccCCC-ccc--cCcccccCC-------CCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCcCchhhcc
Q 005207 190 LQELLLDGTD-IKE--LPLSIEHLF-------GLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTT 257 (709)
Q Consensus 190 L~~L~l~~~~-i~~--lp~~l~~l~-------~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 257 (709)
|+.|++++|. ++. +|..++.+. +|+.|++++|... .+|. .++++++|+.|++++|.+. .+| .+..
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence 9999999998 874 888777766 9999999998866 8998 8999999999999999988 777 8899
Q ss_pred CCCCCeeeccCccCcccCcccCCCCC-CCEEeccCCCCCccccccccCCCC--CCEEEeeCcCCCccCCcc---cc--CC
Q 005207 258 MEDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLKS--LKTLNLSGCCKLENVPDT---LG--QV 329 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~L~~~~~~~~l~~~~~~l~~--L~~L~L~~~~~~~~~~~~---l~--~l 329 (709)
+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. ++ .+
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999999999999999999 999999999977 78888777654 999999999988766532 23 34
Q ss_pred CccceeeccccccccCCcccc-cccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccC
Q 005207 330 ESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD 408 (709)
Q Consensus 330 ~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~ 408 (709)
++|+.|++++|.+..+|..+. .+++|+.|++++|...... .... ....+.+.++++|+.|+|++
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip-~~~~--------------~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP-ENSL--------------KPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC-TTSS--------------SCTTSCCTTGGGCCEEECCS
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC-hHHh--------------ccccccccccCCccEEECCC
Confidence 589999999999999998876 6899999999999854211 1100 00111244566999999999
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEcCCCCCcccChhhhcCCCcCeecccc------ccccccCCCC---CCCccEEEecC
Q 005207 409 CGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CKRLQFLPQL---PPNIIFVKVNG 477 (709)
Q Consensus 409 n~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~i~~ 477 (709)
|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++
T Consensus 738 N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 738 NKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 9996 5888887 99999999999999999999999999999999987 4445566642 36899999999
Q ss_pred CCCcceecCccccccccCcccccccch
Q 005207 478 CSSLVTLLGALKLCKSNGIVIECIDSL 504 (709)
Q Consensus 478 C~~L~~l~~~~~~~~l~~l~~~~c~~L 504 (709)
|.- ..++.... .+++.|++++++-.
T Consensus 816 N~L-~~Ip~~l~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 816 NDI-RKVDEKLT-PQLYILDIADNPNI 840 (876)
T ss_dssp SCC-CBCCSCCC-SSSCEEECCSCTTC
T ss_pred CCC-CccCHhhc-CCCCEEECCCCCCC
Confidence 965 77775533 47788888887643
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=357.11 Aligned_cols=446 Identities=17% Similarity=0.188 Sum_probs=282.0
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcccc-----CcccccCcCccEEEeeCCCCCCC-CCcC-CcC
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLL-----EGLEYLSNKLRLLDWHRYPLKSL-PSNL-QLD 88 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~-----~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~ 88 (709)
...++.+.|..+ .. ..+.+.+|.++++|++|++++|... +.+..+ ++|++|++++|.+..+ |..+ .++
T Consensus 23 p~~l~~LdLs~N-~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFN-YI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEESC-CC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCcCEEECCCC-cC---CccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCc
Confidence 357888888887 43 4667789999999999999998543 345555 5999999999999888 5556 899
Q ss_pred CceEEEcccCCccc-cccc--cccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCccccccCcccccccccccC
Q 005207 89 KIVEFKMCYSRIEE-LWKG--IKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV 163 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l 163 (709)
+|++|+|++|.++. ++.. +.++++|++|+|++|.+....+ .|+++++|++|++++|..-...+..+..+..
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~---- 173 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG---- 173 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH----
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC----
Confidence 99999999999985 4544 8999999999999999877654 4899999999999998543334444443211
Q ss_pred CCccEEEccCCCCCCcCCccccCCCc------cceeeccCCCcc-ccCcccc----------------------------
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMEC------LQELLLDGTDIK-ELPLSIE---------------------------- 208 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~------L~~L~l~~~~i~-~lp~~l~---------------------------- 208 (709)
++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+. .++..+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 56677777777776666655555544 777777776544 2221111
Q ss_pred --------c--CCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-Ccc
Q 005207 209 --------H--LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSS 277 (709)
Q Consensus 209 --------~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~ 277 (709)
. .++|+.|++++|......|..+..+++|+.|++++|.+....+..+.++++|++|++++|.+..+ +..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 1 24677777777666555566667777777777777777766666777777777777777777655 445
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc---------
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS--------- 348 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~--------- 348 (709)
+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. ..+++|+.|++++|.+..+|..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeec
Confidence 67777777777777766555556667777777777777665421 1244555555555554444322
Q ss_pred -------------cccccCCcEEEccCCCCCCCCCccccc--cccccccCcccc-c-----cccCCCCCCCCCCCEEecc
Q 005207 349 -------------VFLMKNLRTLSFSGCNGPPSSASWHLH--LPFNLMGKSSCL-V-----ALMLPSLSGLRSLTKLDLS 407 (709)
Q Consensus 349 -------------~~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-----~~~lp~l~~l~~L~~L~Ls 407 (709)
+..+++|++|++++|+........... ..........+. . +.....+.++++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 235677777777777644221110000 000000000000 0 0111125555666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCCCCCccEEEecC
Q 005207 408 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 477 (709)
Q Consensus 408 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~ 477 (709)
+|+++ +..|..+..+++|+.|+|++|+++.+|..... ++|+.|+|++|......|...++|+.|++.+
T Consensus 489 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 489 HNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred CCccc-ccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 66664 44455566666666666666666655543322 5666666666655555555445566666554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=344.28 Aligned_cols=423 Identities=22% Similarity=0.241 Sum_probs=328.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L 90 (709)
..++.+.+..+ ....+.+.+|.++++|+.|++++|.+.+ .+..+ ++|++|++++|.++.+|. .+ .+++|
T Consensus 28 ~~l~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFN----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSC----CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCC----ccCccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 46777777777 3456777899999999999999998763 23444 599999999999999884 44 89999
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCC-C-CCCCCCCCCccEEeccCCccccccC-cccccccccccCCCc
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLI-K-TPDFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESL 166 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L 166 (709)
++|++++|+++.++. .+..+++|++|++++|.+.. . +..++++++|++|++++|. +..++ ..+..+.++ +.+
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L---~~~ 178 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM---PLL 178 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC---TTC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc---chh
Confidence 999999999999875 68999999999999998876 2 3468999999999999984 44443 334443322 211
Q ss_pred -cEEEccCCCCCCcCCccccCCCccceeeccCCC----------------------------------------------
Q 005207 167 -KILILSGCLKLRKFPHVVGSMECLQELLLDGTD---------------------------------------------- 199 (709)
Q Consensus 167 -~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~---------------------------------------------- 199 (709)
+.+++++|.+.+..+..+... +|+.|++++|.
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 678888888777766666555 67777776652
Q ss_pred ------------cc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 200 ------------IK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 200 ------------i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+. .+|..+..+++|+.|++++|.. ..+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeC
Confidence 11 2345667789999999998764 4688888888 9999999999877 4444 47889999999
Q ss_pred cCccCcccCcccCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 267 DGTSITEVPSSIELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 267 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
++|.+...... ..+++|+.|++++|.+.+.. +..+..+++|++|++++|...+..+. +..+++|+.|++++|.+..
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 99988754443 77899999999999876553 67788899999999999877665444 8889999999999999986
Q ss_pred CCc--ccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCC
Q 005207 345 PPS--SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 422 (709)
Q Consensus 345 l~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 422 (709)
.+. .+..+++|++|++++|..... ....+.++++|+.|++++|++.++.+|..+..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVA----------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEEC----------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccchhhhhcCCCCCEEeCcCCccccc----------------------chhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 643 577899999999999874321 11227788999999999999865678899999
Q ss_pred CCCCCEEEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCC-C---CCCccEEEecCCC
Q 005207 423 LHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ-L---PPNIIFVKVNGCS 479 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l---p~sL~~L~i~~C~ 479 (709)
+++|++|++++|+++.+ |..+..+++|+.|++++|+ ++.+|. . .++|+.|++++++
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999999999966 7788999999999999995 444442 1 2466666666654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=340.72 Aligned_cols=422 Identities=18% Similarity=0.161 Sum_probs=262.8
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCccccc-cccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~ 117 (709)
++++.|++++|.+.+ .+..+ ++|++|++++|.++.++.. + .+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 457777777777653 23334 4777777777777777643 3 6777777777777777665 5677777777777
Q ss_pred cCCCCCCCCCC-CCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc----c
Q 005207 118 LSHSENLIKTP-DFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL----Q 191 (709)
Q Consensus 118 Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L----~ 191 (709)
+++|++....+ .++++++|++|++++|.... .+|..++. +++|++|++++|.+.+..+..++.+++| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG------CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcc------cCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 77777655544 47777777777777763222 24444433 5667777777777776666667766666 6
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCC------------------------------------------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN------------------------------------------------ 223 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~------------------------------------------------ 223 (709)
.|++++|.+..++.......+|+.|++++|..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 77777777776655444444677776665421
Q ss_pred ----------CCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 224 ----------LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 224 ----------l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
....|..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 1112222333444445554444433 233334444 45555555554444443 244455555555544
Q ss_pred CCccccccccCCCCCCEEEeeCcCCCccC--CccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCc
Q 005207 294 NFARVPSSINGLKSLKTLNLSGCCKLENV--PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSAS 371 (709)
Q Consensus 294 ~~~~l~~~~~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 371 (709)
..+..+. ..+++|++|++++|...... +..+..+++|+.|++++|.+..++..+..+++|++|++++|......
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 412 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-- 412 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT--
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc--
Confidence 4333332 34555555555555443322 34444555555555555555555554555555555555555421110
Q ss_pred cccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCc
Q 005207 372 WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNL 449 (709)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L 449 (709)
....+..+++|+.|++++|.+. +..|..+..+++|++|++++|++. .+|..+..+++|
T Consensus 413 -------------------~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 413 -------------------EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp -------------------TSCTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred -------------------chhhhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 0123778999999999999985 667888999999999999999997 689999999999
Q ss_pred CeeccccccccccCCCC---CCCccEEEecCCCCcceecCc--cccccccCccccccc
Q 005207 450 KELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECID 502 (709)
Q Consensus 450 ~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c~ 502 (709)
+.|++++|+.....|.. .++|++|++++| .++.+... ....+++.+++.+++
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999755544532 368999999998 46665432 234455666666543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=343.77 Aligned_cols=348 Identities=16% Similarity=0.168 Sum_probs=291.9
Q ss_pred CCCCCCCCccEEeccCCccccc------------------cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 128 PDFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~~l~~------------------~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
+.++++++|++|+|++|. +.. +|..++ +..+++|++|++++|.+.+.+|..++++++
T Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLK----WDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred HHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhh----hcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 358899999999999985 555 777666 013678999999999999999999999999
Q ss_pred cceeeccCCC-cc--ccCcccccC------CCCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCcCchhhccC
Q 005207 190 LQELLLDGTD-IK--ELPLSIEHL------FGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTTM 258 (709)
Q Consensus 190 L~~L~l~~~~-i~--~lp~~l~~l------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 258 (709)
|++|++++|. ++ .+|..++.+ ++|+.|++++|... .+|. .++++++|++|++++|.+.+.+| .+..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 88 499988886 99999999998766 8998 89999999999999999987888 88999
Q ss_pred CCCCeeeccCccCcccCcccCCCCC-CCEEeccCCCCCccccccccCCC--CCCEEEeeCcCCCccCCcccc-------C
Q 005207 259 EDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPDTLG-------Q 328 (709)
Q Consensus 259 ~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~L~~~~~~~~~~~~l~-------~ 328 (709)
++|++|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 9999999999999999999999999 999999999977 7888877655 999999999999999888888 7
Q ss_pred CCccceeeccccccccCCccccc-ccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEecc
Q 005207 329 VESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 407 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls 407 (709)
+++|+.|++++|.++.+|..+.. +++|++|++++|...... .... ....+.+.++++|+.|+|+
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~--------------~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP-KNSL--------------KDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC-SSSS--------------EETTEECTTGGGCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC-HHHh--------------ccccccccccCCccEEECc
Confidence 88999999999999999988765 899999999999854211 1100 0001113445599999999
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEEEcCCCCCcccChhhhcCCCcCeecccc------ccccccCCCC---CCCccEEEec
Q 005207 408 DCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CKRLQFLPQL---PPNIIFVKVN 476 (709)
Q Consensus 408 ~n~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~i~ 476 (709)
+|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.- .++|+.|+++
T Consensus 497 ~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99996 6888886 99999999999999999999999999999999965 4445566642 3689999999
Q ss_pred CCCCcceecCccccccccCccccccc
Q 005207 477 GCSSLVTLLGALKLCKSNGIVIECID 502 (709)
Q Consensus 477 ~C~~L~~l~~~~~~~~l~~l~~~~c~ 502 (709)
+|.- +.++.... .+++.|++.+++
T Consensus 575 ~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 575 SNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred CCcC-CccCHhHh-CcCCEEECcCCC
Confidence 9875 77765432 566677777664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=343.30 Aligned_cols=423 Identities=20% Similarity=0.187 Sum_probs=297.3
Q ss_pred CCCCcceEEecCccccC----cccccCcCccEEEeeCC-CCCCC-CCcC-CcCCceEEEcccCCcccc-ccccccccCCc
Q 005207 43 LMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRY-PLKSL-PSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLK 114 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~-~l~~l-p~~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~ 114 (709)
-.++|+.|++++|.+.+ .+..+ .+|++|++++| ....+ |..+ .+++|++|+|++|.|+.+ |..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 45789999999998763 34455 58999999998 45566 4555 899999999999999977 67899999999
Q ss_pred EEEcCCCCCCCCCC-C--CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCC--Cc
Q 005207 115 VMKLSHSENLIKTP-D--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM--EC 189 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~-~--~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l--~~ 189 (709)
+|+|++|.+....+ . +.++++|++|+|++|. +..++.. ..+..+++|++|++++|.+.+..+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLH----PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCC----GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccc----hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999998876443 2 8899999999999984 3333211 123447889999999999988888888877 89
Q ss_pred cceeeccCCCcc-ccCcccccCCC------CcEEecCCCCCCCcCccccc------------------------------
Q 005207 190 LQELLLDGTDIK-ELPLSIEHLFG------LVQLTLNDCKNLSSLPVAIS------------------------------ 232 (709)
Q Consensus 190 L~~L~l~~~~i~-~lp~~l~~l~~------L~~L~L~~~~~l~~lp~~l~------------------------------ 232 (709)
|+.|++++|.+. ..|..+..+.+ |+.|++++|......+..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 999999999887 45666665554 99999998865443332221
Q ss_pred ------C--CccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCcccccccc
Q 005207 233 ------S--FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSIN 303 (709)
Q Consensus 233 ------~--l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 303 (709)
+ .++|+.|++++|.+....+..+..+++|+.|+|++|.+..+ +..+..+++|+.|++++|.+.+..|..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1 25788888888888877788888888888888888888866 45678888889999888888777788888
Q ss_pred CCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 304 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 304 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
.+++|++|++++|.+....+..+..+++|+.|++++|.++.++. +++|+.|++++|+.......... ......
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~---l~~L~l 408 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLT---ANLIHL 408 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTT---CCEEEC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccc---cceeec
Confidence 88889999998887776667778888889999998888887654 67788888888775432211000 000000
Q ss_pred c-cccccccCC-CCCCC-------------------------CCCCEEeccCCCCCC----CCCCCCCCCCCCCCEEEcC
Q 005207 384 S-SCLVALMLP-SLSGL-------------------------RSLTKLDLSDCGLGE----GAIPSDIGNLHSLNELYLS 432 (709)
Q Consensus 384 ~-~~~~~~~lp-~l~~l-------------------------~~L~~L~Ls~n~l~~----~~~~~~l~~l~~L~~L~L~ 432 (709)
. +.......+ .+.++ ++|+.|+|++|.+.. +..+..+..+++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 0 000000000 02234 445555555554421 2223446666777777777
Q ss_pred CCCCcccCh-hhhcCCCcCeeccccccccccCCC--CCCCccEEEecCCC
Q 005207 433 KNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ--LPPNIIFVKVNGCS 479 (709)
Q Consensus 433 ~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~ 479 (709)
+|+++.+|. .+..+++|+.|+|++| .++.+|. ++++|+.|+++++.
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 777775554 3567777777777777 3455543 45677777777653
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=338.39 Aligned_cols=422 Identities=15% Similarity=0.141 Sum_probs=291.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCcCCcCCceE
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVE 92 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 92 (709)
..++.+.+..+ + ...+.+.+|.++++|+.|++++|++.+ .+..+ ++|++|++++|.++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n-~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQN-Y---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSS-C---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred ccccEEECCCC-c---ccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEEecCCCceeecCcc-ccCCccE
Confidence 45666666666 3 234555667777777777777776653 23333 4677777777777777766 6777777
Q ss_pred EEcccCCccc--cccccccccCCcEEEcCCCCCCCCCCCCCCCCCc--cEEeccCCcc--ccccCcccccccccccCCCc
Q 005207 93 FKMCYSRIEE--LWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNL--EELYLEGCTK--LRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 93 L~Ls~n~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L--~~L~L~~~~~--l~~~~~~i~~l~~L~~l~~L 166 (709)
|++++|+++. +|..++.+++|++|++++|++.. ..+..+++| ++|++++|.. ....|..+..+.. ..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-----~~ 167 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-----ES 167 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-----EE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccccccccc-----ce
Confidence 7777777765 34667777777777777776543 345555566 7777777643 3334444333221 22
Q ss_pred cEEEccCCCCCCcCC-ccccCCCccceeeccCCC-------ccccCcccccCCCCcEEecCCCCCCCcCcccc---cCCc
Q 005207 167 KILILSGCLKLRKFP-HVVGSMECLQELLLDGTD-------IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI---SSFQ 235 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~-------i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l---~~l~ 235 (709)
..+++++|...+.++ ..+..+++|+.|++++|. +......++.+++|+.|++++|......+..+ ...+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 345666666555444 356678899999999886 44333478888999999998765443221111 1145
Q ss_pred cCcEEeeeCCCCCCcCchhh-----ccCCCCCeeeccCccCcccC-cccCCC---CCCCEEeccCCCCCccccccccCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVP-SSIELL---PGLELLNLNDCKNFARVPSSINGLK 306 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~l~-~~~~~l---~~L~~L~L~~~~~~~~l~~~~~~l~ 306 (709)
+|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.... ....++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~ 324 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKIS 324 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCC
Confidence 89999999998887788777 8888999999999888 666 333333 67999999998765432 125788
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeecccccccc---CCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR---PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+|++|++++|.+.+..|..++.+++|+.|++++|.++. +|..+..+++|++|++++|......+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~------------- 391 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK------------- 391 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-------------
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc-------------
Confidence 99999999998888888888999999999999999885 44567789999999999988432111
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
...+..+++|+.|++++|+++ +..|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+
T Consensus 392 --------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l 459 (520)
T 2z7x_B 392 --------KGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSV 459 (520)
T ss_dssp --------GCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC
T ss_pred --------cchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCcc
Confidence 112567789999999999886 45555443 78999999999999999888899999999999984 5566
Q ss_pred CCC----CCCccEEEecCCC
Q 005207 464 PQL----PPNIIFVKVNGCS 479 (709)
Q Consensus 464 p~l----p~sL~~L~i~~C~ 479 (709)
|.- .++|+.|++++++
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 642 1355555555544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=330.00 Aligned_cols=427 Identities=18% Similarity=0.202 Sum_probs=303.5
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.+..+ + ...+.+.+|.++++|++|++++|.+.+ .+..+ .+|++|++++|.++.+|.. + .+++|
T Consensus 26 ~~L~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN-K---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS-C---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCC-c---cCccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCC
Confidence 57888888887 4 345667899999999999999998764 23444 5899999999999999875 4 89999
Q ss_pred eEEEcccCCcccc--ccccccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCccccccCccccccccccc----
Q 005207 91 VEFKMCYSRIEEL--WKGIKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l--~~~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~---- 162 (709)
++|++++|.++.+ +..+..+++|++|++++|+.....+ .+.++++|++|++++|......|..+..+.+|+.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 5778999999999999998554443 6899999999999998654456666655433321
Q ss_pred --------------CCCccEEEccCCCCCCcC---CccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCC
Q 005207 163 --------------VESLKILILSGCLKLRKF---PHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLND 220 (709)
Q Consensus 163 --------------l~~L~~L~Ls~~~~~~~~---~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~ 220 (709)
+++|++|++++|.+.+.. ......+++|+.|+++++.+. .++..+..+.+|+.|++++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 345555555555544321 112233455555555555544 2333445566666666666
Q ss_pred CCCCCc--C----cccccCCccCcEEeeeCCCCCCc-----CchhhccCCCCCeeeccCccCcccCccc-CCCCCCCEEe
Q 005207 221 CKNLSS--L----PVAISSFQCLRNLKLSGCSKLKK-----FPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLN 288 (709)
Q Consensus 221 ~~~l~~--l----p~~l~~l~~L~~L~Ls~~~~~~~-----~~~~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~ 288 (709)
|...+. + ...+..+.+|+.|++.++.+... .+......++|+.|++++|.+..+|..+ ..+++|+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 543221 1 11234566777777777654331 2233445678999999999998888776 5789999999
Q ss_pred ccCCCCCcccc---ccccCCCCCCEEEeeCcCCCccCC--ccccCCCccceeeccccccccCCcccccccCCcEEEccCC
Q 005207 289 LNDCKNFARVP---SSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 289 L~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
+++|.+.+..| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC
Confidence 99998887664 346788999999999987765432 4577889999999999999999988888999999999998
Q ss_pred CCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh
Q 005207 364 NGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i 443 (709)
..... |. .-.++|+.|++++|+++. + ...+++|++|+|++|+++.+|. .
T Consensus 421 ~l~~l------------------------~~-~~~~~L~~L~Ls~N~l~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~ 469 (549)
T 2z81_A 421 GIRVV------------------------KT-CIPQTLEVLDVSNNNLDS--F---SLFLPRLQELYISRNKLKTLPD-A 469 (549)
T ss_dssp CCSCC------------------------CT-TSCTTCSEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCC-G
T ss_pred Ccccc------------------------cc-hhcCCceEEECCCCChhh--h---cccCChhcEEECCCCccCcCCC-c
Confidence 74321 11 012589999999998853 2 2578899999999999998886 4
Q ss_pred hcCCCcCeeccccccccccCCC---CCCCccEEEecCCC
Q 005207 444 NSLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNGCS 479 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C~ 479 (709)
..+++|+.|+|++|+.-...|. -.++|+.|++++++
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 6789999999999854332222 12456666666655
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=324.76 Aligned_cols=412 Identities=18% Similarity=0.144 Sum_probs=306.6
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+.|+++++.+..-+..++++|++|++++|.++.++. .+ .+++|++|+|++|+|+.+ |..+..+++|++|+|++|++.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 578999999887666677899999999999999884 44 899999999999999987 578999999999999999877
Q ss_pred CCCCCCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc--ceeeccCCCc-
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL--QELLLDGTDI- 200 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L--~~L~l~~~~i- 200 (709)
. +|.. .+++|++|++++|.... .+|..++. +++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 83 ~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~------l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 83 K-ISCH-PTVNLKHLDLSFNAFDALPICKEFGN------MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp E-EECC-CCCCCSEEECCSSCCSSCCCCGGGGG------CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred e-cCcc-ccCCccEEeccCCccccccchhhhcc------CCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 4 4433 89999999999984332 24444444 6789999999998876 456667777 9999999988
Q ss_pred -c-ccCccccc--------------------------CCCCcEEecCCCC-------CCCcCcccccCCccCcEEeeeCC
Q 005207 201 -K-ELPLSIEH--------------------------LFGLVQLTLNDCK-------NLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 201 -~-~lp~~l~~--------------------------l~~L~~L~L~~~~-------~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
. ..|..+.. +++|+.|++++|. ..+.+| .++.+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 3 44555544 4445555555543 122222 3555666666666665
Q ss_pred CCCCcCchhh---ccCCCCCeeeccCccCc-ccCccc-----CCCCCCCEEeccCCCCCcccc-ccccCC---CCCCEEE
Q 005207 246 SKLKKFPQIV---TTMEDLSELNLDGTSIT-EVPSSI-----ELLPGLELLNLNDCKNFARVP-SSINGL---KSLKTLN 312 (709)
Q Consensus 246 ~~~~~~~~~~---~~l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~~~~l~-~~~~~l---~~L~~L~ 312 (709)
.+....+..+ ...++|++|++++|.+. .+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 5443222111 12458999999999998 788887 8999999999999987 555 444444 6899999
Q ss_pred eeCcCCCccCCccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCcccccccc
Q 005207 313 LSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 391 (709)
Q Consensus 313 L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (709)
+++|...... ....+++|++|++++|.++. +|..+..+++|++|++++|+..... .
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---------------------~ 365 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS---------------------K 365 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH---------------------H
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc---------------------c
Confidence 9999875532 12678999999999999996 7888899999999999999843210 0
Q ss_pred CC-CCCCCCCCCEEeccCCCCCCCCCCC-CCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCC---
Q 005207 392 LP-SLSGLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ--- 465 (709)
Q Consensus 392 lp-~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~--- 465 (709)
+| .+..+++|+.|++++|++. +.+|. .+..+++|++|++++|+++ .+|..+. ++|+.|++++|. ++.+|.
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~ 441 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV 441 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCB-CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCC-cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhh
Confidence 11 1678899999999999996 43554 5888999999999999996 5554443 799999999994 567775
Q ss_pred CCCCccEEEecCCCCcceecCc--cccccccCcccccc
Q 005207 466 LPPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECI 501 (709)
Q Consensus 466 lp~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c 501 (709)
-.++|++|++++| .++.++.. ....+++.+++.++
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 2368999999998 57777643 23344555555544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=324.15 Aligned_cols=418 Identities=19% Similarity=0.225 Sum_probs=292.7
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccc-cccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~ 117 (709)
++|+.|++++|.+.+ .+..+ ++|++|++++|.++.++. .+ .+++|++|+|++|+++.++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999998763 34444 599999999999999885 44 899999999999999988754 99999999999
Q ss_pred cCCCCCCCC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeec
Q 005207 118 LSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLL 195 (709)
Q Consensus 118 Ls~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l 195 (709)
|++|++... ++.+.++++|++|++++|..+..+|.. .+..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHh-----hhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999998753 356899999999999998767776642 2334788999999999999999999999999999999
Q ss_pred cCCCccccCccc-ccCCCCcEEecCCCCCCCcC--c-ccccCCccCcEEeeeCCCCCCcCc----hhhccCCCCCeeecc
Q 005207 196 DGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSL--P-VAISSFQCLRNLKLSGCSKLKKFP----QIVTTMEDLSELNLD 267 (709)
Q Consensus 196 ~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~l--p-~~l~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~L~ 267 (709)
+++.+..+|..+ ..+++|+.|++++|...+.. | .....+++|+.|++++|.+....+ ..+..+++|+.++++
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 999998888765 56899999999998765431 1 123457899999999987765433 344677889999999
Q ss_pred CccCcccCc-------ccCCCC-----------------------------CCCEEeccCCCCCccccccc-cCCCCCCE
Q 005207 268 GTSITEVPS-------SIELLP-----------------------------GLELLNLNDCKNFARVPSSI-NGLKSLKT 310 (709)
Q Consensus 268 ~~~i~~l~~-------~~~~l~-----------------------------~L~~L~L~~~~~~~~l~~~~-~~l~~L~~ 310 (709)
+|.+..++. .+..++ +|+.|++++|.+ ..+|..+ ..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccE
Confidence 887664321 123334 455555555543 2344443 35666666
Q ss_pred EEeeCcCCCccCC---ccccCCCccceeeccccccccCCc---ccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 311 LNLSGCCKLENVP---DTLGQVESLEELDISETAVRRPPS---SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 311 L~L~~~~~~~~~~---~~l~~l~~L~~L~L~~n~i~~l~~---~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
|++++|.+.+.+| ..++.+++|+.|++++|.++.++. .+..+++|++|++++|+...
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------- 401 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP----------------- 401 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-----------------
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-----------------
Confidence 6666666655442 235566666666666666665542 35556666666666665321
Q ss_pred cccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 385 SCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 385 ~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
+|. +..+++|+.|++++|++. .+|..+ .++|++|++++|+++.++ ..+++|++|++++| .++.+
T Consensus 402 -------lp~~~~~~~~L~~L~Ls~N~l~--~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 402 -------MPDSCQWPEKMRFLNLSSTGIR--VVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp -------CCSCCCCCTTCCEEECTTSCCS--CCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSC
T ss_pred -------CChhhcccccccEEECCCCCcc--cccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcC
Confidence 122 555677777777777764 244333 257777777777777654 46777888888877 45566
Q ss_pred CCC--CCCccEEEecCCCCcceecCc--cccccccCccccccc
Q 005207 464 PQL--PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECID 502 (709)
Q Consensus 464 p~l--p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c~ 502 (709)
|.. .++|+.|+++++ .++.+... ....+++.+++..++
T Consensus 467 p~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 467 PDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 652 467777777776 45544322 223344455554443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=312.48 Aligned_cols=395 Identities=15% Similarity=0.136 Sum_probs=227.4
Q ss_pred CCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccccccccCCcEEEc
Q 005207 45 TNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 118 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~L 118 (709)
++|+.|++++|.+.+. +..+ ++|++|++++|.++.++. .+ .+++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 4555555555554422 2222 355555555555555532 23 455555555555555555544 5555555555
Q ss_pred CCCCCCCCC--CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCC--CCcCCccccCC-------
Q 005207 119 SHSENLIKT--PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK--LRKFPHVVGSM------- 187 (709)
Q Consensus 119 s~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~--~~~~~~~l~~l------- 187 (709)
++|++.... ..|+++++|++|++++|. +.. ..+ ..+..+ +|++|++++|.+ .+..|..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~---~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDL---LPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTT---GGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc-ccc--Cch---hhhhhc-eeeEEEeecccccccccCcccccccCcceEEE
Confidence 555554422 235555555555555542 221 111 112222 335566655555 44444433332
Q ss_pred -------------------CccceeeccCCCc-----cccCcccccCCCCcEEecCCCCCCC----cCcccccCCccCcE
Q 005207 188 -------------------ECLQELLLDGTDI-----KELPLSIEHLFGLVQLTLNDCKNLS----SLPVAISSFQCLRN 239 (709)
Q Consensus 188 -------------------~~L~~L~l~~~~i-----~~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~ 239 (709)
++|+.|++++|.. ......+..+++|+.|++.++.... .++..+ ..++|++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccE
Confidence 2233333333220 0111122223333333333221110 111111 1347888
Q ss_pred EeeeCCCCCCcCchhh-----ccCCCCCeeeccCccCcccCc-ccC---CCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 240 LKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVPS-SIE---LLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 240 L~Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~l~~-~~~---~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|+.|++++|.+.... ....+++|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 8888888877777665 5566666666666665 4442 111 1256888888888764322 1257788889
Q ss_pred EEeeCcCCCccCCccccCCCccceeeccccccccCC---cccccccCCcEEEccCCCCCCCCCccccccccccccCcccc
Q 005207 311 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP---SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL 387 (709)
Q Consensus 311 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (709)
|++++|.+.+..|..++.+++|+.|++++|.++.++ ..+..+++|++|++++|......+
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------------- 420 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----------------- 420 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-----------------
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-----------------
Confidence 999888888878888888888999999888888655 456778888999998887432111
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCC-
Q 005207 388 VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL- 466 (709)
Q Consensus 388 ~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 466 (709)
...+..+++|+.|++++|+++ +..|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+|.-
T Consensus 421 ----~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~ 492 (562)
T 3a79_B 421 ----DRTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV 492 (562)
T ss_dssp ----SCCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTS
T ss_pred ----hhhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHH
Confidence 111567788888999888885 45555443 68888999988888888888888889999998884 5556542
Q ss_pred ---CCCccEEEecCC
Q 005207 467 ---PPNIIFVKVNGC 478 (709)
Q Consensus 467 ---p~sL~~L~i~~C 478 (709)
.++|+.|+++++
T Consensus 493 ~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 493 FDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTTCTTCCCEECCSC
T ss_pred HhcCCCCCEEEecCC
Confidence 134444444443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=302.40 Aligned_cols=371 Identities=17% Similarity=0.142 Sum_probs=212.6
Q ss_pred EEecCccccCcccccCcCccEEEeeCCCCCCCC-CcC-CcCCceEEEcccCCcc-cc-ccccccccCCcEEEcCCCCCCC
Q 005207 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIE-EL-WKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 50 L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~i~-~l-~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
++.+++.+..-+. +|++|++|++++|.++.++ ..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|++..
T Consensus 15 ~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 15 AICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred cCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 4444444433333 4456666666666666553 333 5666666666666654 33 2445666666666666666554
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc-ccCCCccceeeccCCCcccc
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV-VGSMECLQELLLDGTDIKEL 203 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~-l~~l~~L~~L~l~~~~i~~l 203 (709)
..| .|.++++|++|++++|.....++.. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+..+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHS----STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCc----ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 433 3566666666666665322112211 11223455566666666555554543 55566666666666655533
Q ss_pred -CcccccC--CCCcEEecCCCCCCCcCccc--------ccCCccCcEEeeeCCCCCCcCchhhccC---CCCCeeeccCc
Q 005207 204 -PLSIEHL--FGLVQLTLNDCKNLSSLPVA--------ISSFQCLRNLKLSGCSKLKKFPQIVTTM---EDLSELNLDGT 269 (709)
Q Consensus 204 -p~~l~~l--~~L~~L~L~~~~~l~~lp~~--------l~~l~~L~~L~Ls~~~~~~~~~~~~~~l---~~L~~L~L~~~ 269 (709)
|..+..+ .+|+.|++++|.....-+.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 2333333 45555555554433222111 1234455555555555554444433322 44555555554
Q ss_pred cCcccCcccCCCCCCCEEeccCCCCCcccccccc--CCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccC-C
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSIN--GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-P 346 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l-~ 346 (709)
...........++ ...+..+. ..++|++|++++|.+.+..|..++.+++|++|++++|.+..+ |
T Consensus 250 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 250 YNMGSSFGHTNFK-------------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTTSCCTTCCSSC-------------CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccccccchhhhc-------------cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 3332111000000 00111111 235788888888877777777777888888888888888755 4
Q ss_pred cccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 005207 347 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 426 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 426 (709)
..+..+++|++|++++|...... ...+.++++|+.|+|++|++. +..|..+..+++|
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 373 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSID----------------------SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC----------------------GGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred hHhcCcccCCEEECCCCccCCcC----------------------hhHhcCcccCCEEECCCCccc-ccChhhccccccc
Confidence 46667888888888887632110 112667888999999999885 5567888899999
Q ss_pred CEEEcCCCCCcccChh-hhcCCCcCeeccccccccc
Q 005207 427 NELYLSKNNFVTLPAS-INSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 427 ~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~ 461 (709)
++|+|++|+++.+|.. +..+++|+.|+|++|+.-.
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 9999999999988764 5789999999999987543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=300.16 Aligned_cols=386 Identities=19% Similarity=0.197 Sum_probs=254.2
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc----cccC------------cCccEEEeeCCCCC
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL----EYLS------------NKLRLLDWHRYPLK 79 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~----~~l~------------~~L~~L~l~~~~l~ 79 (709)
...++.+.+..+ .. ..++ .+|.++++|+.|++++|.+.+.+ ..+. .++++|++++|.++
T Consensus 10 ~~~L~~L~l~~n-~l---~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NL---TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccC-ch---hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 356777777776 33 3454 67999999999999998876432 2221 13689999999999
Q ss_pred CCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccc
Q 005207 80 SLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNK 159 (709)
Q Consensus 80 ~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~ 159 (709)
.+|. .+++|++|++++|+++.+|.. +++|+.|++++|++... +.+ .++|++|++++| .+..+| .
T Consensus 85 ~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n-~l~~lp-~------ 148 (454)
T 1jl5_A 85 SLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNN-QLEKLP-E------ 148 (454)
T ss_dssp CCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSS-CCSSCC-C------
T ss_pred cCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCC-CCCCCc-c------
Confidence 9988 358999999999999998854 47899999999976542 222 268999999998 455565 2
Q ss_pred cccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcE
Q 005207 160 LIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN 239 (709)
Q Consensus 160 L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 239 (709)
+..+++|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .++.+++|+.|++++|... .+|.. .++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccE
Confidence 3447889999999998775 55543 58999999999999988 6899999999999997654 45542 358999
Q ss_pred EeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 240 LKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 240 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
|++++|.+. .+|. +..+++|++|++++|.+..+|.. +++|+.|++++|.+.+ +|.. +++|++|++++|.+.
T Consensus 220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 999999776 5664 78899999999999999988763 4789999999988665 5543 478999999998766
Q ss_pred ccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCC
Q 005207 320 ENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLR 399 (709)
Q Consensus 320 ~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~ 399 (709)
+ ++.. .++|+.|++++|.++.++.. .++|++|++++|+... +|. .++
T Consensus 291 ~-l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~------------------------lp~--~~~ 337 (454)
T 1jl5_A 291 G-LSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE------------------------LPA--LPP 337 (454)
T ss_dssp E-ESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC------------------------CCC--CCT
T ss_pred c-ccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc------------------------ccc--cCC
Confidence 5 2211 26899999999998876531 3589999999987432 121 257
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc---cChhhhcC-------------CCcCeeccccccccccC
Q 005207 400 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT---LPASINSL-------------LNLKELEMEDCKRLQFL 463 (709)
Q Consensus 400 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~---lp~~i~~l-------------~~L~~L~L~~c~~L~~l 463 (709)
+|+.|++++|++. .+|. .+++|++|++++|+++. +|.++..+ ++|+.|++++|+ ++.+
T Consensus 338 ~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~ 411 (454)
T 1jl5_A 338 RLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREF 411 (454)
T ss_dssp TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred cCCEEECCCCccc--cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcc
Confidence 8999999999985 4676 47899999999999886 56666666 677777777774 5556
Q ss_pred CCCCCCccEEEecCCC
Q 005207 464 PQLPPNIIFVKVNGCS 479 (709)
Q Consensus 464 p~lp~sL~~L~i~~C~ 479 (709)
|.+|++++.|.+.+|.
T Consensus 412 ~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 412 PDIPESVEDLRMNSER 427 (454)
T ss_dssp ----------------
T ss_pred ccchhhHhheeCcCcc
Confidence 6777777777766554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=309.37 Aligned_cols=418 Identities=16% Similarity=0.098 Sum_probs=292.9
Q ss_pred CCCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCC
Q 005207 44 MTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 44 l~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~ 120 (709)
....+.++++++.+.+-+..++++|++|++++|.++.+|. .+ .+++|++|+|++|+|+.+ |..+..+++|++|+|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3445889999999887666677899999999999998884 44 889999999999999987 46789999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccC--cccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCC
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVH--PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT 198 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~ 198 (709)
|++...++. .+++|++|++++|. +..++ ..++ .+++|++|++++|.+.......+..+ +|+.|++++|
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~------~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFG------NLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGG------GCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEES
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhc------ccCcccEEecCCCccccCchhhhhhc-eeeEEEeecc
Confidence 987644434 89999999999984 55443 3333 36788999999988876433333333 4499999998
Q ss_pred Cc--c-ccCcccccCC-CCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCC---------------------------
Q 005207 199 DI--K-ELPLSIEHLF-GLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCS--------------------------- 246 (709)
Q Consensus 199 ~i--~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~--------------------------- 246 (709)
.+ . ..|..+..+. ....+++++|.....++. .+..+++|+.+++++|.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 88 4 4455555443 111334444444333322 23445555666555542
Q ss_pred -CCCc----CchhhccCCCCCeeeccCccCc-ccCccc-----CCCCCCCEEeccCCCCCcccc-ccccC---CCCCCEE
Q 005207 247 -KLKK----FPQIVTTMEDLSELNLDGTSIT-EVPSSI-----ELLPGLELLNLNDCKNFARVP-SSING---LKSLKTL 311 (709)
Q Consensus 247 -~~~~----~~~~~~~l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~~~~l~-~~~~~---l~~L~~L 311 (709)
+... .+.. ...++|++|++++|.+. .+|..+ ..++.|+.+++..+.. .+| ..+.. ..+|++|
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 2211 1111 12348999999999988 788776 6777777777777665 444 22222 3679999
Q ss_pred EeeCcCCCccCCccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccc
Q 005207 312 NLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVAL 390 (709)
Q Consensus 312 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (709)
++++|...... ..+.+++|++|++++|.++. +|..+..+++|++|++++|+.....
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 99999875432 12678999999999999996 6788899999999999999843211
Q ss_pred cCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCCC--
Q 005207 391 MLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL-- 466 (709)
Q Consensus 391 ~lp-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-- 466 (709)
.+| .+.++++|+.|++++|++.....+..+..+++|++|++++|+++ .+|..+. ++|+.|++++| .++.+|.-
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~ 470 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVT 470 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhc
Confidence 011 26788999999999999963233445888999999999999997 4444333 79999999999 56777752
Q ss_pred -CCCccEEEecCCCCcceecCc--cccccccCcccccc
Q 005207 467 -PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECI 501 (709)
Q Consensus 467 -p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c 501 (709)
.++|+.|+++++ .+++++.. ....+++.+++.+.
T Consensus 471 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 471 HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 268999999887 46676643 23345555555543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=298.66 Aligned_cols=342 Identities=21% Similarity=0.313 Sum_probs=258.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+++.|++.++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|++....+ +.++++|++|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n- 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN- 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-
Confidence 4778888888888777764477888888888888887765 7788888888888887665555 778888888888876
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+++ +..+++|++|++++|.+.+. + .++.+++|+.|+++ +.+..++. +..+++|+.|++++|.. .
T Consensus 123 ~l~~~~~-------~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~ 190 (466)
T 1o6v_A 123 QITDIDP-------LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-S 190 (466)
T ss_dssp CCCCCGG-------GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-C
T ss_pred CCCCChH-------HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-C
Confidence 4444432 34467788888888776552 2 47778888888885 44554443 77888888888888763 3
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.++. +..+++|++|++++|.+....+ ++.+++|++|++++|.+..++ .+..+++|+.|++++|.+.+..+ +..+
T Consensus 191 ~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 191 DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred CChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcC
Confidence 4443 6778888888888887766544 667888888888888888764 46778888888888887766544 7788
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (709)
++|++|++++|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.....
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~----------------- 324 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI----------------- 324 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC-----------------
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc-----------------
Confidence 888888888887765443 7788889999999988887766 67888999999998874321
Q ss_pred ccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 386 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 386 ~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
+.+..+++|+.|++++|++.+ + ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|+.
T Consensus 325 -------~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 325 -------SPVSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred -------hhhccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 125577889999999998863 2 468888999999999999987765 88899999999999863
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=297.59 Aligned_cols=348 Identities=19% Similarity=0.289 Sum_probs=290.5
Q ss_pred CCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCC
Q 005207 43 LMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 120 (709)
.+++|+.|++.++.+.. ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++. +..+++|++|++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HhccccEEecCCCCCccCcchhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 35678899998887653 34455 5999999999999999884489999999999999998876 89999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCc
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i 200 (709)
|.+.... .+..+++|++|++++|. +..++ .+..+++|+.|++++ ..... + .+..+++|+.|++++|.+
T Consensus 122 n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~-~~~~~-~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 122 NQITDID-PLKNLTNLNRLELSSNT-ISDIS-------ALSGLTSLQQLSFGN-QVTDL-K-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp SCCCCCG-GGTTCTTCSEEEEEEEE-ECCCG-------GGTTCTTCSEEEEEE-SCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred CCCCCCh-HHcCCCCCCEEECCCCc-cCCCh-------hhccCCcccEeecCC-cccCc-h-hhccCCCCCEEECcCCcC
Confidence 9866554 48999999999999983 44433 245578899999974 33332 2 388999999999999999
Q ss_pred cccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
..++ .+..+++|+.|++++|......| ++.+++|++|++++|.+... ..+..+++|+.|++++|.+..++. +..
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhc
Confidence 9876 48899999999999987655444 77799999999999987653 467889999999999999998776 889
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEc
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSF 360 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 360 (709)
+++|+.|++++|.+.+..+ +..+++|+.|++++|...+..+ ++.+++|+.|++++|.+..+++ +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 9999999999998776544 7889999999999998776544 7889999999999999998776 778999999999
Q ss_pred cCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccC
Q 005207 361 SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440 (709)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 440 (709)
++|+... ++.+..+++|+.|++++|++. +..| +..+++|+.|++++|+++.+|
T Consensus 339 ~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 339 YNNKVSD------------------------VSSLANLTNINWLSAGHNQIS-DLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CSSCCCC------------------------CGGGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCCccCC------------------------chhhccCCCCCEEeCCCCccC-ccch--hhcCCCCCEEeccCCcccCCc
Confidence 9997432 234778999999999999996 4445 899999999999999999887
Q ss_pred hh
Q 005207 441 AS 442 (709)
Q Consensus 441 ~~ 442 (709)
..
T Consensus 392 ~~ 393 (466)
T 1o6v_A 392 VN 393 (466)
T ss_dssp BC
T ss_pred hh
Confidence 54
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=292.08 Aligned_cols=365 Identities=19% Similarity=0.154 Sum_probs=240.2
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCCCCC--CCCCCCCCccEEeccCC
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIKT--PDFTEAPNLEELYLEGC 144 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~--~~~~~l~~L~~L~L~~~ 144 (709)
-+.++.+++.++.+|. -+++|++|+|++|+|+.+ +..+..+++|++|+|++|.+...+ ..|.++++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3457778888888888 458899999999999877 567888899999999988875443 34788888888888887
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCcc--ccCCCccceeeccCCCcccc-Ccc-cccCCCCcEEecCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV--VGSMECLQELLLDGTDIKEL-PLS-IEHLFGLVQLTLND 220 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~l-p~~-l~~l~~L~~L~L~~ 220 (709)
......|..+.. +++|++|++++|.+.+..+.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++
T Consensus 90 ~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 90 QFLQLETGAFNG------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TTCEECTTTTTT------CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred ccCccChhhccC------cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 432222333332 556667777777666544333 66666666666666666654 333 55666666666666
Q ss_pred CCCCCcCcccccCC--ccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccc
Q 005207 221 CKNLSSLPVAISSF--QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV 298 (709)
Q Consensus 221 ~~~l~~lp~~l~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l 298 (709)
|......+..+..+ .+|+.|++++|.+....+..+.. .....+..+++|+.|++++|.+.+..
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccc---------------cccccccccceeeeEecCCCcccccc
Confidence 55544444444433 34555555554443322211100 00011223456666666666655555
Q ss_pred cccccCC---CCCCEEEeeCcCCCccC----------Ccccc--CCCccceeeccccccccC-CcccccccCCcEEEccC
Q 005207 299 PSSINGL---KSLKTLNLSGCCKLENV----------PDTLG--QVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSG 362 (709)
Q Consensus 299 ~~~~~~l---~~L~~L~L~~~~~~~~~----------~~~l~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~ 362 (709)
|..+... ++|+.|++++|...+.. +..+. ..++|+.|++++|.+..+ |..+..+++|++|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 5444322 56666666665433221 11222 236899999999999954 66788899999999999
Q ss_pred CCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-Ch
Q 005207 363 CNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PA 441 (709)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~ 441 (709)
|..... ....+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+ |.
T Consensus 309 n~l~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 309 NEINKI----------------------DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp SCCCEE----------------------CTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred Cccccc----------------------ChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChh
Confidence 984321 1223778999999999999995 55678899999999999999999976 67
Q ss_pred hhhcCCCcCeeccccccccccCCC-C---CCCccEEEecCCC
Q 005207 442 SINSLLNLKELEMEDCKRLQFLPQ-L---PPNIIFVKVNGCS 479 (709)
Q Consensus 442 ~i~~l~~L~~L~L~~c~~L~~lp~-l---p~sL~~L~i~~C~ 479 (709)
.+..+++|++|++++|+ ++.+|. . .++|+.|++++++
T Consensus 366 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 89999999999999995 555553 1 2456666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=297.98 Aligned_cols=427 Identities=21% Similarity=0.264 Sum_probs=313.4
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.|..+ ....+.+.+|.++++||+|++++|++.+ .+..+ ++|++|++++|+++.+|.. | .+.+|
T Consensus 52 ~~~~~LdLs~N----~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFN----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCC----CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 35777777776 3457888999999999999999998763 34455 5999999999999999965 4 89999
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCC-CC-CCCCCCCccEEeccCCccccccC-ccccccccccc----
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIK-TP-DFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~-~~-~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~---- 162 (709)
++|+|++|+++.++. .++++++|++|+|++|.+... .| .++.+++|++|++++|. +..++ ..+..+..+..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhh
Confidence 999999999999885 589999999999999987654 33 47889999999999984 44433 33332222111
Q ss_pred -----------------CCCccEEEccCCCCCC-----------------------------------------------
Q 005207 163 -----------------VESLKILILSGCLKLR----------------------------------------------- 178 (709)
Q Consensus 163 -----------------l~~L~~L~Ls~~~~~~----------------------------------------------- 178 (709)
...++.+++.+|....
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 0122233333321110
Q ss_pred -----------cCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 179 -----------KFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 179 -----------~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
..+..+..+.+++.+.+.++.+..++ .+.....|+.|++.+|......+ ..+..|+.+++..+..
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred hhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 00111222345555666555555444 35667789999999876543322 3477899999998876
Q ss_pred CCcCchhhccCCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC-
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP- 323 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~- 323 (709)
.... ....+++|+.|++++|.+.. .+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++......+
T Consensus 362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 5433 33468899999999998873 45556778899999999876543 45567789999999999887665543
Q ss_pred ccccCCCccceeeccccccccC-CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCCCCCCC
Q 005207 324 DTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLSGLRSL 401 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~~l~~L 401 (709)
..+..+++++.++++.|.+... +..+..+++|+.|++++|..... ..| .+..+++|
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----------------------~~~~~~~~l~~L 496 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNL 496 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTC
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccc----------------------cCchhhhhcccc
Confidence 4577889999999999999855 45566789999999999862211 122 27788999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeeccccccccccCCC----CCCCccEEEec
Q 005207 402 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVN 476 (709)
Q Consensus 402 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~ 476 (709)
+.|+|++|++. +..|..+..+++|++|+|++|+++.++. .+..+++|+.|+|++|+.....|. +|++|+.|+++
T Consensus 497 ~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 497 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 99999999995 6678889999999999999999998765 678999999999999965544443 56788888887
Q ss_pred CCC
Q 005207 477 GCS 479 (709)
Q Consensus 477 ~C~ 479 (709)
+.|
T Consensus 576 ~Np 578 (635)
T 4g8a_A 576 QND 578 (635)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=293.94 Aligned_cols=419 Identities=17% Similarity=0.142 Sum_probs=249.5
Q ss_pred CcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCcccccc-ccccccCCcEEEc
Q 005207 46 NLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKL 118 (709)
Q Consensus 46 ~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~L 118 (709)
+++.|++++|.+.+ .+..+ ++|++|++++|.++.+|.. | .+++|++|+|++|+|+.+|. .|.++++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46666666666542 23333 3566666666666666543 3 56666666666666666553 3566666666666
Q ss_pred CCCCCCCCCC-CCCCCCCccEEeccCCccccc--cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc----c
Q 005207 119 SHSENLIKTP-DFTEAPNLEELYLEGCTKLRK--VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL----Q 191 (709)
Q Consensus 119 s~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~--~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L----~ 191 (709)
++|++....+ .|+++++|++|++++|. +.. +|..++ .+++|++|++++|.+.+..+..+..+.++ .
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFS------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGG------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhc------cchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 6665554443 25666666666666652 222 222222 24556666666666555544444333222 2
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCC------------------------------C----------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL------------------------------S---------------- 225 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l------------------------------~---------------- 225 (709)
.++++.|.+..++........++.+++.++... .
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 344444444433322222222222222221100 0
Q ss_pred ------------cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeee---------------------ccCccCc
Q 005207 226 ------------SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN---------------------LDGTSIT 272 (709)
Q Consensus 226 ------------~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~---------------------L~~~~i~ 272 (709)
..+..+..+.+++.+.+.++..... ..+....+|+.|+ +..+.+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 0001112223344444444332221 1122333444444 4444443
Q ss_pred ccCcccCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--cc
Q 005207 273 EVPSSIELLPGLELLNLNDCKNFA--RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SS 348 (709)
Q Consensus 273 ~l~~~~~~l~~L~~L~L~~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~ 348 (709)
..+ ....+++|+.|++++|.+.. ..+.....+.+|+.+++..+.... .+..+..+++|+.+++..+...... ..
T Consensus 363 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 363 NAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp CBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence 332 23467899999999988753 345566788999999999876544 4456778999999999998877443 34
Q ss_pred cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 005207 349 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 428 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 428 (709)
+..+++++.++++.|...... ...+..+++|+.|++++|++.....|..+..+++|++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~----------------------~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAF----------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECC----------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred ccccccccccccccccccccc----------------------ccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 667999999999998743221 1226778999999999998765678899999999999
Q ss_pred EEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCCC----CCCccEEEecCCCCcceecCcc--c-cccccCccccc
Q 005207 429 LYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQL----PPNIIFVKVNGCSSLVTLLGAL--K-LCKSNGIVIEC 500 (709)
Q Consensus 429 L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~sL~~L~i~~C~~L~~l~~~~--~-~~~l~~l~~~~ 500 (709)
|+|++|+++.+ |..+.++++|++|+|++|+ ++.++.. .++|+.|+++++. |+.+.... . +.+++.|++.+
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence 99999999977 5578999999999999994 6666542 2689999998874 44443221 1 23455565543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=278.45 Aligned_cols=344 Identities=19% Similarity=0.213 Sum_probs=252.4
Q ss_pred cceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCC
Q 005207 47 LGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIK 126 (709)
Q Consensus 47 L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~ 126 (709)
++.|+++++.+.+- ...|++|++|++++|.++.+|.. +.+|++|++++|+++.++.. .++|++|++++|++..
T Consensus 73 l~~L~l~~~~l~~l-p~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 73 AHELELNNLGLSSL-PELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp CSEEECTTSCCSCC-CSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred CCEEEecCCccccC-CCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-
Confidence 49999999998763 33568999999999999999974 48999999999999987643 2799999999998876
Q ss_pred CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc
Q 005207 127 TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 206 (709)
Q Consensus 127 ~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~ 206 (709)
.|.++++++|++|++++| .+..+|.. ..+|++|++++|.+.+ +| .++.+++|++|++++|.++.+|..
T Consensus 146 lp~~~~l~~L~~L~l~~N-~l~~lp~~---------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNN-SLKKLPDL---------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CcccCCCCCCCEEECCCC-cCcccCCC---------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 668999999999999998 56666643 2489999999998877 56 589999999999999999988864
Q ss_pred cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCE
Q 005207 207 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 286 (709)
Q Consensus 207 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 286 (709)
. .+|+.|++++|... .+|. ++.+++|++|++++|.+.. +|. .+++|++|++++|.+..+|.. +++|+.
T Consensus 214 ~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTF 281 (454)
T ss_dssp C---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCE
T ss_pred c---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc---cCcCCE
Confidence 4 58999999998654 7885 8999999999999998765 443 347899999999999998864 489999
Q ss_pred EeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC-CccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 287 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV-ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 287 L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
|++++|.+.+ +|.. .++|++|++++|...+ ++ .+ ++|+.|++++|.++.+|.. +++|++|++++|..
T Consensus 282 L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 282 LDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp EECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred EECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc
Confidence 9999998765 2221 2689999999997765 22 23 5899999999999998875 58999999999974
Q ss_pred CCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCC--CCCCCCCCC-------------CCCCEEE
Q 005207 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG--AIPSDIGNL-------------HSLNELY 430 (709)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l-------------~~L~~L~ 430 (709)
.. +|. .+++|+.|++++|++. + .+|..++.+ ++|+.|+
T Consensus 350 ~~------------------------lp~--~l~~L~~L~L~~N~l~-~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 350 AE------------------------VPE--LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp SC------------------------CCC--CCTTCCEEECCSSCCS-SCCCCCTTCCEEECCC----------------
T ss_pred cc------------------------ccc--hhhhccEEECCCCCCC-cCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 31 233 4689999999999996 4 577888777 8999999
Q ss_pred cCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 431 LSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 431 L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
+++|+++.+|.- -+.|+.|.+.+|.....+
T Consensus 403 ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 403 VETNPLREFPDI---PESVEDLRMNSERVVDPY 432 (454)
T ss_dssp ---------------------------------
T ss_pred CCCCcCCccccc---hhhHhheeCcCcccCCcc
Confidence 999999854321 134677788888654443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-31 Score=287.25 Aligned_cols=344 Identities=17% Similarity=0.135 Sum_probs=242.3
Q ss_pred hhcCCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 40 AFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.|.++++|+.|++++|.+.+ ++..+ ++|++|++++|.++.+| ...+++|++|++++|+++.++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 57778999999999998775 34444 58999999999999886 338899999999999999875 88899999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+++|++... + ++.+++|++|++++| .+..++ +..+++|++|++++|...+.+ .++.+++|+.|++++
T Consensus 113 L~~N~l~~l-~-~~~l~~L~~L~l~~N-~l~~l~--------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 113 CDTNKLTKL-D-VSQNPLLTYLNCARN-TLTEID--------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCSSCCSCC-C-CTTCTTCCEEECTTS-CCSCCC--------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCCCcCCee-c-CCCCCcCCEEECCCC-ccceec--------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 999987653 3 889999999999997 444442 344778999999999776666 477889999999999
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
|.++.+| +..+++|+.|++++|.... ++ ++.+++|++|++++|.+.+ +| +..+++|+.|++++|.++.+|
T Consensus 180 n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 180 NKITELD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp SCCCCCC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred Cccceec--cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 9999887 7888999999999876544 33 7888999999999988777 45 778889999999999998876
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcc--------
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSS-------- 348 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~-------- 348 (709)
++.+++|+.|+++++ +|+.|++++|...+.+| .+.+++|+.|++++|... .+|..
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 455666666655443 23444444444444443 234444555555444322 12210
Q ss_pred cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 005207 349 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 428 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 428 (709)
+..+++|++|++++|+... + .++.+++|+.|++++|++.+ +++|..
T Consensus 314 l~~~~~L~~L~L~~N~l~~------------------------l-~l~~l~~L~~L~l~~N~l~~---------l~~L~~ 359 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE------------------------L-DVSHNTKLKSLSCVNAHIQD---------FSSVGK 359 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC------------------------C-CCTTCTTCSEEECCSSCCCB---------CTTGGG
T ss_pred hhhcccCCEEECCCCcccc------------------------c-ccccCCcCcEEECCCCCCCC---------cccccc
Confidence 1122456666666655221 1 15556666777776666642 245555
Q ss_pred EEcCCCCCcccChhhhcCCCcCeeccccccccccCC
Q 005207 429 LYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 429 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
|++++|.+... ..+..|+.+++++|..-..+|
T Consensus 360 L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 360 IPALNNNFEAE----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp SSGGGTSEEEE----EEEEECCCBCCBTTBEEEECC
T ss_pred ccccCCcEEec----ceeeecCccccccCcEEEEcC
Confidence 56666665543 245678889999997665655
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=274.13 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=164.9
Q ss_pred ccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 184 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
+..+++|++|++++|.+..++. +..+++|+.|++++|.....++. +..+++|++|++++|.+....+ +..+++|++
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 4445555555555555555544 55666666666666655555554 6667777777777766554433 566777777
Q ss_pred eeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 264 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|......+ +..+++|++|++++|.+.
T Consensus 182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 7777777776655 6667777777777776654433 6667777777777776655433 667778888888888777
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 423 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 423 (709)
.++ .+..+++|++|++++|.... ++.+..+++|+.|++++|++. +..+..+..+
T Consensus 257 ~~~-~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l 310 (347)
T 4fmz_A 257 DIN-AVKDLTKLKMLNVGSNQISD------------------------ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGL 310 (347)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTC
T ss_pred CCh-hHhcCCCcCEEEccCCccCC------------------------ChhhcCCCCCCEEECcCCcCC-CcChhHhhcc
Confidence 763 46677888888888876321 123567788888888888885 4566677888
Q ss_pred CCCCEEEcCCCCCcccChhhhcCCCcCeecccccc
Q 005207 424 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458 (709)
Q Consensus 424 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 458 (709)
++|+.|++++|+++.+++ +..+++|+.|++++|+
T Consensus 311 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 899999999998887776 7888899999998885
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=281.75 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=274.7
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+.++++++.+..-+..+|.++++|++++|.++.++. .+ .+++|++|+|++|.|+.+ |..+.++++|++|+|++|++.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 567788887777666778899999999999999864 44 899999999999999987 678999999999999999987
Q ss_pred CCCCC-CCCCCCccEEeccCCcccccc-CcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc
Q 005207 125 IKTPD-FTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 125 ~~~~~-~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
...+. |.++++|++|+|++|. +..+ +..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENK-IVILLDYMF------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSC-CCEECTTTT------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred ccCcccccCCCCCCEEECCCCc-cccCChhHc------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 76654 8899999999999984 4443 3333 347889999999999998889999999999999999999998
Q ss_pred cCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCC
Q 005207 203 LPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIEL 280 (709)
Q Consensus 203 lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~ 280 (709)
+|. .+..+++|+.|++++|......+..+..+++|++|++++|.....++.......+|++|++++|.++.+|. .+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 875 58899999999999988777666778999999999999999988888777777799999999999999984 5899
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEE
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLS 359 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~ 359 (709)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 99999999999998888788899999999999999999998899999999999999999999988875 46799999999
Q ss_pred ccCCCC
Q 005207 360 FSGCNG 365 (709)
Q Consensus 360 L~~~~~ 365 (709)
+++|+.
T Consensus 327 l~~N~l 332 (477)
T 2id5_A 327 LDSNPL 332 (477)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 999983
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=269.25 Aligned_cols=305 Identities=17% Similarity=0.243 Sum_probs=259.1
Q ss_pred hhcCCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 40 AFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.+..+++|+.|+++++.+.. ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cchhcccccEEEEeCCccccchhhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 45678999999999988763 44555 599999999999999988448999999999999999885 689999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+++|++....+ +..+++|++|++++|.....++. +..+++|++|++++|.+....+ +..+++|+.|++++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99998765444 88999999999999865554432 4557889999999998776544 88999999999999
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
|.+..++. +..+++|+.|++++|..... +. +..+++|++|++++|.+....+ +..+++|++|++++|.+..++ .
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~ 260 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-A 260 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G
T ss_pred Cccccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-h
Confidence 99998887 88999999999999765543 33 7889999999999998876544 888999999999999999874 5
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcE
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRT 357 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 357 (709)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.+++ +..+++|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence 88999999999999987654 457889999999999999988888889999999999999999998877 888999999
Q ss_pred EEccCCCC
Q 005207 358 LSFSGCNG 365 (709)
Q Consensus 358 L~L~~~~~ 365 (709)
|++++|..
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 99999873
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=277.34 Aligned_cols=315 Identities=22% Similarity=0.216 Sum_probs=181.9
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~ 145 (709)
-+.++.++..++.+|..+ +.++++|+|++|+|+.++ ..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 346667777777777654 356777777777777664 456777777777777776655433 4666666666666665
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l 224 (709)
.+..+|. ..+.++++|++|++++|.+..+ |..+..+++|+.|++++|...
T Consensus 91 ~l~~~~~-----------------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 91 RLKLIPL-----------------------------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CCCSCCT-----------------------------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred cCCccCc-----------------------------ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc
Confidence 3333332 2233334444444444443322 222333333333333333332
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
...+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+..
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-----------------------~~~~~~~~~ 198 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----------------------AIRDYSFKR 198 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-----------------------EECTTCSCS
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-----------------------EeChhhccc
Confidence 222333444555555555555444443444444445555555444444 333334445
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCc-ccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+++|+.|++++|...+.++.......+|+.|++++|.++.+|. .+..+++|++|++++|.....
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 263 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--------------- 263 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE---------------
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc---------------
Confidence 5555555555555555554444444466666666666665553 345566666666666652211
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChh-hhcCCCcCeeccccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCKR 459 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 459 (709)
....+.++++|+.|+|++|++. +..|..+..+++|+.|+|++|+++.++.. +..+++|+.|++++|+.
T Consensus 264 -------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 264 -------EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -------CTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -------ChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 1112667788888888888885 55677888888999999999988887764 57788888888888863
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=271.74 Aligned_cols=322 Identities=17% Similarity=0.112 Sum_probs=212.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
++|++|++++|.++.+|....+++|++|++++|+++.++ +..+++|++|++++|++... + ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSS-
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCC-
Confidence 478888888888888874447788888888888888775 77788888888888876553 2 777788888888776
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCC-CccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.+..++ +..+++|++|++++|.+.+. + ++.+++|++|++++| .+..+ .+..+++|+.|++++|..
T Consensus 117 ~l~~l~--------~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l- 182 (457)
T 3bz5_A 117 KLTKLD--------VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI- 182 (457)
T ss_dssp CCSCCC--------CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-
T ss_pred cCCeec--------CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-
Confidence 344432 23356677777777766553 2 566667777777666 33344 355666666666666543
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
..+| +..+++|+.|++++|.+... .+..+++|++|++++|.++.+| ++.+++|+.|++++|.+.+.. +..
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 3344 55666666666666665543 2556666666666666666665 566666666666666655432 344
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+++|+.|+++++ +|+.|++++|... .+| ...+++|+.|++++|......+..
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~----------- 305 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ----------- 305 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-----------
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-----------
Confidence 566666665542 4677777777654 333 456899999999999854332210
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 457 (709)
..... .+ .+.++++|+.|++++|+++. + .++.+++|+.|++++|+++.+ +.|..|++++|
T Consensus 306 ~~~L~--~L-~l~~~~~L~~L~L~~N~l~~--l--~l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n 365 (457)
T 3bz5_A 306 AAGIT--EL-DLSQNPKLVYLYLNNTELTE--L--DVSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNN 365 (457)
T ss_dssp TCCCS--CC-CCTTCTTCCEEECTTCCCSC--C--CCTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGT
T ss_pred CCcce--Ee-chhhcccCCEEECCCCcccc--c--ccccCCcCcEEECCCCCCCCc-------cccccccccCC
Confidence 00011 11 26677899999999999963 4 388899999999999998875 35556666655
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=265.55 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=234.9
Q ss_pred cCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCC-CCCCCCccEEec
Q 005207 66 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 141 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 141 (709)
.++++|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....+. +.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 58889999999888888764 78899999999999998774 788999999999999988777664 789999999999
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
++| .+..+|..+ +..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ +..+++|+.|++++|
T Consensus 125 ~~n-~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 125 ERN-DLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CSS-CCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CCC-ccCcCCHHH-----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc
Confidence 997 566666543 223678999999999988888888999999999999999998775 677889999999987
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
... . +...++|++|++++|.+... +. ...++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..
T Consensus 197 ~l~-~----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 197 LLS-T----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CCS-E----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-c----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhH
Confidence 532 2 33456899999999887654 22 2357899999999999876 46788999999999999988888888
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+..+|..+..+++|++|++++|..
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 9999999999999987655 45566788999999999999999998888999999999999873
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=265.21 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=174.6
Q ss_pred cCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccc
Q 005207 84 NLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI 161 (709)
Q Consensus 84 ~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 161 (709)
...+.++++|+++++.++.+|.. +..+++|++|+|++|.+....+ .|..+++|++|++++| .+..+++.. +.
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 114 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 114 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hc
Confidence 34779999999999999999866 6889999999999998877665 6889999999999987 455544321 22
Q ss_pred cCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 162 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
.+++|++|++++|.+....+..++.+++|++|++++|.+..++. .+..+++|+.|++++|.... ++ +..+++|+.|
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--ccccccccee
Confidence 35677778887777665544556777777777777777776543 46677777777777765433 22 4556677777
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.. +...++|++|++++|.+..++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 777665432 22334667777777766665442 245666666666665442 345566666666666666655
Q ss_pred cCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 321 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
..|..+..+++|+.|++++|.++.++.....+++|++|++++|+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 55566666666666666666665555444445555555555544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=274.93 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=239.3
Q ss_pred cCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCC-CCCCCCccEEec
Q 005207 66 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 141 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 141 (709)
.+++.|+++++.+..+|..+ .+++|++|+|++|.|+.++. .+..+++|++|+|++|.+...++. |+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 58899999999999999865 78999999999999998874 789999999999999998777664 789999999999
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
++| .+..+|+.+. ..+++|++|++++|.+.+..|..++.+++|+.|++++|.+..++ +..+++|+.|++++|
T Consensus 131 ~~n-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 131 ERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CSS-CCCCCCTTTT-----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred eCC-CCCCCCHHHh-----ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 998 5667776542 23688999999999999888889999999999999999999875 667899999999987
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
... . +...++|+.|++++|.+....+.. .++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..
T Consensus 203 ~l~-~----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 203 LLS-T----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CCS-E----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-c----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHH
Confidence 543 2 344678999999998876543322 36899999999999875 56888999999999999998888999
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..+|..+..+++|++|++++|..
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 9999999999999987765 56667788999999999999999999999999999999999884
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=272.65 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=227.3
Q ss_pred cCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccc
Q 005207 84 NLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI 161 (709)
Q Consensus 84 ~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 161 (709)
...+.+++.|+++++.++.+|.. +..+++|++|+|++|.+....+ .|+.+++|++|+|++| .+..+++.. +.
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 120 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 120 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----Hc
Confidence 34678999999999999999865 6889999999999999877765 6999999999999998 456555432 22
Q ss_pred cCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 162 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+..++. .+..+++|+.|++++|.... ++ ++.+++|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhh
Confidence 36788889999888876666667888899999999888886654 57888888888888876443 33 5567888888
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.. +...++|+.|++++|.+..++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 888876543 234557888888888888766543 3678888888887665 3567778888888888888777
Q ss_pred cCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCC
Q 005207 321 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 400 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~ 400 (709)
..|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|..... .+.+..+++
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-----------------------~~~~~~l~~ 325 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-----------------------ERNQPQFDR 325 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC-----------------------GGGHHHHTT
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc-----------------------CcccccCCC
Confidence 777777788888888888888777776666677777777777663211 011344566
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 005207 401 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437 (709)
Q Consensus 401 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 437 (709)
|+.|+|++|.+.. ++ +..+++|+.|++++|++.
T Consensus 326 L~~L~L~~N~l~~--~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 326 LENLYLDHNSIVT--LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSEEECCSSCCCC--CC--CCTTCCCSEEECCSSCEE
T ss_pred CCEEECCCCCCCC--cC--hhhcCCCCEEEeeCCCCC
Confidence 6667776666642 22 555666666666666655
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=246.49 Aligned_cols=284 Identities=19% Similarity=0.242 Sum_probs=166.1
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+++.++++++.++.+|..+. ++|++|++++|+|+.++. .+..+++|++|+|++|++....| .|..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45555555555555554432 455666666666665553 45566666666666665554433 4556666666666665
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---ccCcccccCCCCcEEecCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~ 221 (709)
.+..+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 111 -~l~~l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 111 -QLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp -CCSBCCSSCC--------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred -cCCccChhhc--------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 3444444322 35666666666665555555666666666666666654 23445566666666666665
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
.. ..+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+. .+|.
T Consensus 182 ~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 182 NI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred cc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 43 33444332 566666666666666556666666666666666666665543 4566666666666666544 5566
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccC------CCccceeecccccccc--C-CcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEELDISETAVRR--P-PSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~------l~~L~~L~L~~n~i~~--l-~~~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.+.+..+..+.. .+.|+.|++++|.+.. + |..+..+++++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6666666777777766665544444322 3567777777777752 2 3455567788888887764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=244.88 Aligned_cols=242 Identities=19% Similarity=0.200 Sum_probs=182.3
Q ss_pred CCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L 166 (709)
.+++.++++++.++.+|..+. ++|+.|+|++|++....+ .|.++++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------- 86 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN---------------------- 86 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence 367778888888877776543 567777777776655544 3566666666666655
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
.+.+..|..++.+++|++|++++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.
T Consensus 87 --------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 87 --------KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp --------CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred --------cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 3444445666677777777777777777776654 678888888876665555567888888888888887
Q ss_pred CCC--cCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc
Q 005207 247 KLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 247 ~~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 324 (709)
+.. ..+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred CCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 753 566778888999999999999988887654 7899999999888777778888888999999998888777777
Q ss_pred cccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 325 TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 325 ~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
.+..+++|++|++++|.++.+|..+..+++|++|++++|+.
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 78888888888888888888887777777777777777763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=247.02 Aligned_cols=283 Identities=19% Similarity=0.249 Sum_probs=155.6
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+++.++++++.++.+|..+ .++|++|++++|+|+.++ ..+..+++|++|+|++|++....+ .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3455555555555555443 245555555555555543 345555555555555555444432 3555555555555554
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---ccCcccccCCCCcEEecCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~ 221 (709)
.+..+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.++ ..+..+..+ +|+.|++++|
T Consensus 113 -~l~~l~~~~~--------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 113 -HLVEIPPNLP--------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp -CCCSCCSSCC--------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred -cCCccCcccc--------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 3344443322 34555555555555444445555666666666666554 223344444 5666666654
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
.. ..+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+. .+|.
T Consensus 183 ~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 183 KL-TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp BC-SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CC-CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 42 33444332 566666666666655555566666666666666666665543 4566666666666666544 5555
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccC------CCccceeeccccccc--cC-CcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEELDISETAVR--RP-PSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~------l~~L~~L~L~~n~i~--~l-~~~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+. .+ |..+..+++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5666666666666666655544444432 356777777777766 33 3445667888888887765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=242.84 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=166.2
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
+++.++++++.++.+|..+. ++|+.|++++|.+....+ .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----------------------- 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----------------------- 88 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----------------------
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-----------------------
Confidence 56777777777777765542 566666666666554433 3555555555555554
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
.+.+..|..++.+++|++|++++|.+..+|..+. ++|++|++++|......+..+.++++|++|++++|.+
T Consensus 89 -------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 89 -------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp -------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred -------ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 3333445556666777777777777777766554 6777777777665444444577778888888888776
Q ss_pred CC--cCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCcc
Q 005207 248 LK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 325 (709)
Q Consensus 248 ~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 325 (709)
.. ..+..+..+ +|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 160 ~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp BGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 42 455666666 78888888888888876553 67888888888777776677777888888888888777766667
Q ss_pred ccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 326 LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 326 l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+..+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 777788888888888887777777777777777777666
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-27 Score=242.73 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=183.0
Q ss_pred CCceEEEcccCCcc---ccccccccccCCcEEEcCC-CCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc
Q 005207 88 DKIVEFKMCYSRIE---ELWKGIKHLNMLKVMKLSH-SENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~---~l~~~~~~l~~L~~L~Ls~-~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
.++++|+|++++++ .+|..+..+++|++|+|++ |.+....| .+.++++|++|++++|.....+|..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------
Confidence 68889999998888 4788888888888888885 76665554 5788888888888887433355554443
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCC-CCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLF-GLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
+++|++|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+. +|+.|++++|...+.+|..+..++ |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 567778888888877778888888888888888888887 7777777777 788888887776667777777666 7888
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.+..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 88777777777777777777777777777777555556667777777777777766677777777777777777777666
Q ss_pred cCCccccCCCccceeeccccc
Q 005207 321 NVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~ 341 (709)
.+|.. +.+++|+.|++++|.
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCC-ccccccChHHhcCCC
Confidence 66654 566666667666665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=242.71 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=148.1
Q ss_pred CccEEEccCCCCCC--cCCccccCCCccceeeccC-CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEe
Q 005207 165 SLKILILSGCLKLR--KFPHVVGSMECLQELLLDG-TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 241 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~--~~~~~l~~l~~L~~L~l~~-~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 241 (709)
+++.|++++|.+.+ .+|..++++++|++|++++ |.+. +.+|..++++++|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-----------------------~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----------------------GPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----------------------SCCCGGGGGCTTCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-----------------------ccCChhHhcCCCCCEEE
Confidence 45555555555554 4555555555555555552 4443 33343444444444444
Q ss_pred eeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCcCCC
Q 005207 242 LSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKL 319 (709)
Q Consensus 242 Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~ 319 (709)
+++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 4444444444444444444444444444444 3444444455555555555554444555555554 5555555555555
Q ss_pred ccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCC
Q 005207 320 ENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL 398 (709)
Q Consensus 320 ~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l 398 (709)
+.+|..+..++ |+.|++++|.+. ..|..+..+++|++|++++|.... .+|.+..+
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~l 243 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGLS 243 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCCC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCccccc
Confidence 55555555554 556666665555 334445556666666666665221 12225567
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCC
Q 005207 399 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 399 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
++|+.|+|++|++. +.+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 244 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 88888999999885 568889999999999999999998 66755 889999999999998776543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-29 Score=274.42 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=17.8
Q ss_pred CCCCEEEcCCCCCc-----ccChhhhcCCCcCeeccccc
Q 005207 424 HSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 424 ~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c 457 (709)
++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 45555555555554 34445555555555555555
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-28 Score=270.04 Aligned_cols=348 Identities=21% Similarity=0.177 Sum_probs=249.8
Q ss_pred CcCccEEEeeCCCCCCCCCc--C-CcCCceEEEcccCCcc-----ccccccccccCCcEEEcCCCCCCCCCC-C-CCCCC
Q 005207 65 SNKLRLLDWHRYPLKSLPSN--L-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSENLIKTP-D-FTEAP 134 (709)
Q Consensus 65 ~~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~-~~~l~ 134 (709)
|++|++|+++++.++..+.. + .+++|++|++++|+++ .++..+..+++|++|+|++|.+....+ . +..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56899999999998766532 3 7889999999999988 456778888999999999998654321 1 12233
Q ss_pred ----CccEEeccCCcccc-----ccCcccccccccccCCCccEEEccCCCCCCcCCcc-----ccCCCccceeeccCCCc
Q 005207 135 ----NLEELYLEGCTKLR-----KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV-----VGSMECLQELLLDGTDI 200 (709)
Q Consensus 135 ----~L~~L~L~~~~~l~-----~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~-----l~~l~~L~~L~l~~~~i 200 (709)
+|++|++++|. +. .++. .+..+++|++|++++|.+....+.. ....++|++|++++|.+
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSS------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHH------HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHH------HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 79999999984 33 2232 2344678999999999876443332 23356899999999988
Q ss_pred cc-----cCcccccCCCCcEEecCCCCCCCcCccccc-----CCccCcEEeeeCCCCCCc----CchhhccCCCCCeeec
Q 005207 201 KE-----LPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-----SFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNL 266 (709)
Q Consensus 201 ~~-----lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L 266 (709)
+. ++..+..+++|++|++++|......+..+. ..++|++|++++|.+... ++..+..+++|++|++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 73 566778889999999999875433222222 356899999999987664 4667778899999999
Q ss_pred cCccCccc------CcccCCCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcCCCccCCcccc-----CCCc
Q 005207 267 DGTSITEV------PSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKLENVPDTLG-----QVES 331 (709)
Q Consensus 267 ~~~~i~~l------~~~~~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~-----~l~~ 331 (709)
++|.+... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+. ..++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 99988743 22234688999999999977654 566677789999999999876543332222 2368
Q ss_pred cceeecccccccc-----CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCC-CCCCCCEE
Q 005207 332 LEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLS-GLRSLTKL 404 (709)
Q Consensus 332 L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~-~l~~L~~L 404 (709)
|+.|++++|.++. ++..+..+++|++|++++|....... ..+. .+. ..++|+.|
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------------------~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-------------------RELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-------------------HHHHHHHTSTTCCCCEE
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH-------------------HHHHHHHcCCCCceEEE
Confidence 9999999998874 35566678999999999886211000 0000 011 25789999
Q ss_pred eccCCCCCC---CCCCCCCCCCCCCCEEEcCCCCCcc
Q 005207 405 DLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNFVT 438 (709)
Q Consensus 405 ~Ls~n~l~~---~~~~~~l~~l~~L~~L~L~~n~l~~ 438 (709)
++++|++++ ..++..+..+++|++|++++|+++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 999998852 1567777788999999999998873
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=230.52 Aligned_cols=229 Identities=25% Similarity=0.349 Sum_probs=149.7
Q ss_pred cCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 66 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
.+++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|++...++.+..+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 47778888888888887766 67788888888888887777778888888888888877644445777778888888777
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.....+|..++... ++..+..+++|++|++++|.++.+|..++.+++|+.|++++|...
T Consensus 161 ~~~~~~p~~~~~~~---------------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 161 PELTELPEPLASTD---------------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp TTCCCCCSCSEEEC----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCccccChhHhhcc---------------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 66666666554310 111233355555555555555555555555555555555554433
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCcccccccc
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSIN 303 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 303 (709)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 34444555566666666666655555555666666666666665443 5555666677777777777777777777777
Q ss_pred CCCCCCEEEeeCc
Q 005207 304 GLKSLKTLNLSGC 316 (709)
Q Consensus 304 ~l~~L~~L~L~~~ 316 (709)
.+++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777777654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=229.53 Aligned_cols=199 Identities=23% Similarity=0.411 Sum_probs=163.1
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc---------CC
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS---------SF 234 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~---------~l 234 (709)
++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..+..+++|+.|++++|+..+.+|..+. ++
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 34444555555444 455666666777777777777777777777777777777777777777776554 38
Q ss_pred ccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 235 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 235 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
++|++|++++|.+. .+|..+..+++|++|++++|.+..+|..++.+++|+.|++++|...+.+|..+..+++|++|+++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 89999999998777 77888899999999999999999998889999999999999999999999999999999999999
Q ss_pred CcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCC
Q 005207 315 GCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.+++..+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999998765 789999999999999988654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=228.46 Aligned_cols=251 Identities=16% Similarity=0.186 Sum_probs=188.2
Q ss_pred ccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 189 CLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
+|++|++++|.++.++. .+.++++|+.|++++|......|..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666666554 56666677777777665544445567778888888888887776656668888889999999
Q ss_pred CccCcccCc--ccCCCCCCCEEeccCCCCC-ccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 268 GTSITEVPS--SIELLPGLELLNLNDCKNF-ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 268 ~~~i~~l~~--~~~~l~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
+|.+..+|. .+..+++|++|++++|... ...+..+.++++|++|++++|...+..|..++.+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 998888876 6888999999999988544 4445678889999999999998888888889999999999999999887
Q ss_pred CCcccc-cccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCC---CCCCCC
Q 005207 345 PPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDI 420 (709)
Q Consensus 345 l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~---~~~~~l 420 (709)
+|..+. .+++|++|++++|........ .++.....+.++.++++++.+.+. .+|..+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFS-------------------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred chhhhhhhcccccEEECCCCcccccccc-------------------ccccccccchhhccccccccccCcchhhhHHHH
Confidence 776654 488999999999874432110 112233456788888888877531 245667
Q ss_pred CCCCCCCEEEcCCCCCcccChhh-hcCCCcCeecccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCK 458 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 458 (709)
..+++|+.|++++|+++.+|..+ ..+++|++|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 78889999999999998888875 788888888888885
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=223.44 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=115.8
Q ss_pred EEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCC---CCCCCCCCCccEEeccCCc
Q 005207 70 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIK---TPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 70 ~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~---~~~~~~l~~L~~L~L~~~~ 145 (709)
.++++++.++.+|..+. ++|++|++++|+++.++.. +..+++|++|+|++|++... ...+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 34444444444444332 3455555555555544433 34455555555555543322 112333444555555444
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCCCccc-cCcccccCCCCcEEecCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKE-LPLSIEHLFGLVQLTLNDCKN 223 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~-lp~~l~~l~~L~~L~L~~~~~ 223 (709)
.+..+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. .+..+..+++|++|++++|..
T Consensus 89 ~i~~l~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 89 GVITMSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp SEEEEEEEEE------TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ccccChhhcC------CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 2233332221 13444444444444433322 344445555555555555442 223344455555555555443
Q ss_pred CC-cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCcccccc
Q 005207 224 LS-SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 224 l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
.+ .+|..+..+++|++|++++|.+....|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 33 244445555555555555555555445555555555555555555555443 3455555555555555555555555
Q ss_pred ccCCC-CCCEEEeeCcCCC
Q 005207 302 INGLK-SLKTLNLSGCCKL 319 (709)
Q Consensus 302 ~~~l~-~L~~L~L~~~~~~ 319 (709)
+..++ +|++|++++|++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 55553 5555555555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-26 Score=259.62 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCccEEEccCCCCC----CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC---CcCcccccCCc
Q 005207 163 VESLKILILSGCLKL----RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL---SSLPVAISSFQ 235 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~----~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l---~~lp~~l~~l~ 235 (709)
+++|++|++++|.+. ..++..+.++++|+.|+++++.+..+|..+..+++|+.|+++.+... ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 344555555554443 22333344455555555555555555555555555555555432211 11222344445
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcc--cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEe
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE--VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 313 (709)
+|+.|+++++ ....+|..+..+++|++|++++|.+.. +...+..+++|+.|+++++.....++.....+++|++|++
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 5555555442 223334444445555555555554431 1122344555555555422211222222334455555555
Q ss_pred e
Q 005207 314 S 314 (709)
Q Consensus 314 ~ 314 (709)
+
T Consensus 350 ~ 350 (592)
T 3ogk_B 350 E 350 (592)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-26 Score=262.39 Aligned_cols=395 Identities=16% Similarity=0.144 Sum_probs=276.8
Q ss_pred ehhhhcCCCCcceEEecCccc-------cCc--------c----cccCcCccEEEeeCCCCCCCC-CcC-C-c-CCceEE
Q 005207 37 SAKAFSLMTNLGLLKINNVQL-------LEG--------L----EYLSNKLRLLDWHRYPLKSLP-SNL-Q-L-DKIVEF 93 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l-------~~~--------~----~~l~~~L~~L~l~~~~l~~lp-~~~-~-l-~~L~~L 93 (709)
.+..+.++++|+.|+++++.. +.. + ..+ ++|++|++++|.++... ..+ . + .+|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 457888999999999976331 101 1 133 58999999998765322 112 2 3 349999
Q ss_pred EcccCC-cc--ccccccccccCCcEEEcCCCCCCCCCC-----CCCCCCCccEEeccCCccccccC-cccccccccccCC
Q 005207 94 KMCYSR-IE--ELWKGIKHLNMLKVMKLSHSENLIKTP-----DFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVE 164 (709)
Q Consensus 94 ~Ls~n~-i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~ 164 (709)
+|+++. ++ .++.....+++|++|+|++|.+..... .+..+++|++|++++|. +..+. ..+. .-+..++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~--~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLE--TIARNCR 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHH--HHHHHCT
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHH--HHHhhCC
Confidence 998876 22 233334578999999999997543321 23468899999998874 32111 1111 1123468
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCcc----ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK----ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~----~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
+|++|++++|.+.+ ++..+..+++|+.|+++..... ..+..+..+++|+.|+++++ ....+|..+..+++|++|
T Consensus 221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 89999999987665 6788889999999999864322 45567788899999999884 456677778889999999
Q ss_pred eeeCCCCCCcCc-hhhccCCCCCeeeccCccCc--ccCcccCCCCCCCEEeccC----------CCCCcc--ccccccCC
Q 005207 241 KLSGCSKLKKFP-QIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLND----------CKNFAR--VPSSINGL 305 (709)
Q Consensus 241 ~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~----------~~~~~~--l~~~~~~l 305 (709)
++++|.+..... ..+..+++|++|++. +.+. .++.....+++|++|++++ |..... ++.....+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 999998544332 456889999999998 4444 3444456788999999994 443332 23334568
Q ss_pred CCCCEEEeeCcCCCccCCccccC-CCccceeecc----ccccccCC------cccccccCCcEEEccCCCCCCCCCcccc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQ-VESLEELDIS----ETAVRRPP------SSVFLMKNLRTLSFSGCNGPPSSASWHL 374 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~L~----~n~i~~l~------~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 374 (709)
++|++|+++.+...+..+..+.. +++|+.|+++ .+.++..| ..+..+++|++|+++.|......
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~----- 452 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD----- 452 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH-----
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH-----
Confidence 99999999777766655555554 8899999996 56677643 33566999999999876631000
Q ss_pred ccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCe
Q 005207 375 HLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKE 451 (709)
Q Consensus 375 ~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~ 451 (709)
..+.. ...+++|+.|+|++|++++..++..+..+++|+.|+|++|.++ .++..+..+++|+.
T Consensus 453 ---------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 453 ---------------LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp ---------------HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred ---------------HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 00111 2347889999999999875556666788899999999999987 35656678999999
Q ss_pred ecccccc
Q 005207 452 LEMEDCK 458 (709)
Q Consensus 452 L~L~~c~ 458 (709)
|+|++|+
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 9999998
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=225.72 Aligned_cols=268 Identities=18% Similarity=0.174 Sum_probs=152.0
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~ 145 (709)
....+.+++.++.+|..+. ++|++|++++|+|+.++. .+..+++|++|+|++|++....+ .|.++++|++|++++|
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 3456777788888887553 478888888888887765 57778888888888887666544 3777777777777776
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCC-CccccC-cccccCCCCcEEecCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGT-DIKELP-LSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~-~i~~lp-~~l~~l~~L~~L~L~~~~ 222 (709)
.+..++... +..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 111 ~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 111 YLSNLSSSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCHHH-----HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCCcCCHhH-----hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 344444321 1224455555555555443222 24555555555555555 244332 334445555555555544
Q ss_pred CCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccc
Q 005207 223 NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI 302 (709)
Q Consensus 223 ~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~ 302 (709)
.....|..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.++ +..+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----------------------~~~l 242 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH-----------------------FSEL 242 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC-----------------------CC--
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc-----------------------cccc
Confidence 44444444444555555555554443222222333444555555544444332 2211
Q ss_pred ---cCCCCCCEEEeeCcCCCc----cCCccccCCCccceeeccccccccCCccc-ccccCCcEEEccCCCC
Q 005207 303 ---NGLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRPPSSV-FLMKNLRTLSFSGCNG 365 (709)
Q Consensus 303 ---~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~L~~~~~ 365 (709)
...+.++.++++++...+ .+|..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|+.
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 224456666666655443 24555666777777777777777777664 5677777777777764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=222.20 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=208.0
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccc---ccccccccCCcEEEcCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEEL---WKGIKHLNMLKVMKLSHSE 122 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~Ls~~~ 122 (709)
+.++++++.+...+..++.+|++|++++|.++.+|... .+++|++|+|++|+++.+ +..+..+++|++|+|++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 46777777777666667789999999999999999764 899999999999999865 4667789999999999998
Q ss_pred CCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc
Q 005207 123 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
+....+.+..+++|++|++++| .+..++. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccChhhcCCCCCCCEEECCCC-ccccccc----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 7766666889999999999997 4554443 1234457889999999999988889999999999999999999985
Q ss_pred --cCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccC
Q 005207 203 --LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIE 279 (709)
Q Consensus 203 --lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~ 279 (709)
+|..+..+++|+.|++++|......|..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 888999999999999999887776688899999999999999998887777889999999999999999864 55677
Q ss_pred CC-CCCCEEeccCCCCCcc
Q 005207 280 LL-PGLELLNLNDCKNFAR 297 (709)
Q Consensus 280 ~l-~~L~~L~L~~~~~~~~ 297 (709)
.+ ++|+.|++++|++...
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 77 4999999999987543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=224.25 Aligned_cols=244 Identities=20% Similarity=0.250 Sum_probs=199.5
Q ss_pred ccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 189 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
..+.++..+..++.+|..+. .+++.|++++|......+..|.++++|++|+|++|.+....+..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 35567777778888887664 6788888888776665667788889999999999888877778888899999999999
Q ss_pred ccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCCCccceeeccccccccCC
Q 005207 269 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPP 346 (709)
Q Consensus 269 ~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~l~ 346 (709)
|.++.++. .+..+++|+.|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|+.|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99988876 588899999999999888776667788899999999999777776654 6788999999999999999887
Q ss_pred cccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 005207 347 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 426 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 426 (709)
. +..+++|++|++++|..... ....+.++++|+.|+|++|++. +..+..+..+++|
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 257 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAI----------------------RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTC
T ss_pred c-cCCCcccCEEECCCCccCcc----------------------ChhhhccCccCCEEECCCCcee-EEChhhhcCCCCC
Confidence 4 67789999999999874321 1223778899999999999985 5667788899999
Q ss_pred CEEEcCCCCCcccChh-hhcCCCcCeecccccc
Q 005207 427 NELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 458 (709)
Q Consensus 427 ~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 458 (709)
+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999999988764 5778999999999886
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=224.47 Aligned_cols=243 Identities=23% Similarity=0.251 Sum_probs=175.9
Q ss_pred cceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 190 L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
...++.++..++.+|..+. ++++.|++++|......+..|.++++|++|++++|.+....+..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456666666666665543 46777777776655555666777777777777777777666677777777888888777
Q ss_pred cCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCCCccceeeccccccccCCc
Q 005207 270 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPS 347 (709)
Q Consensus 270 ~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~l~~ 347 (709)
.++.++.. +..+++|++|++++|.+....+..+..+++|++|++++|..++.++. .+..+++|+.|++++|.++.+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 77776654 67777888888887776655556677788888888887766666554 5677788888888888888775
Q ss_pred ccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCC
Q 005207 348 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 427 (709)
Q Consensus 348 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 427 (709)
.+..+++|++|++++|...... ...+.++++|+.|+|++|++. +..+..+..+++|+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIR----------------------PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEEC----------------------GGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred cccccccccEEECcCCcCcccC----------------------cccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCC
Confidence 3667788888888887633211 112667788888888888885 55677788888888
Q ss_pred EEEcCCCCCcccChh-hhcCCCcCeecccccc
Q 005207 428 ELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 458 (709)
Q Consensus 428 ~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 458 (709)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 888888888877754 5678888888888885
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=224.92 Aligned_cols=256 Identities=19% Similarity=0.175 Sum_probs=138.3
Q ss_pred CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCC
Q 005207 46 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
+++.|+++++.+..-...++++|++|++++|.++.+|. .+++|++|+|++|+|+.+|. .+++|++|+|++|.+..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC
Confidence 46666666666654444445566666666666666666 45666666666666666655 45666666666665444
Q ss_pred CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc
Q 005207 126 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 205 (709)
Q Consensus 126 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 205 (709)
..+ .+++|+.|++++| .+..+|.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.++.+|
T Consensus 116 l~~---~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp CCC---CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC-
T ss_pred CCC---CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc-
Confidence 322 4456666666665 34444432 2445555555554432 222 1234555555555555544
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 285 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 285 (709)
..+++|+.|+ +++|.+.. +|. .+++|+.|++++|.++.+|.. +++|+
T Consensus 178 --~~~~~L~~L~------------------------Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~ 224 (622)
T 3g06_A 178 --MLPSGLQELS------------------------VSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLK 224 (622)
T ss_dssp --CCCTTCCEEE------------------------CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCC
T ss_pred --ccCCCCcEEE------------------------CCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCC
Confidence 2234444444 44444332 111 124455555555555555432 35555
Q ss_pred EEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 286 LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 286 ~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
.|++++|.+.+ +| ..+++|++|++++|.+. .+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|..
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 66665554433 33 23455666666665443 3333 34566666666666666666666666666666666653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=224.89 Aligned_cols=236 Identities=22% Similarity=0.209 Sum_probs=172.2
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+++.|+++++.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++|++... |. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N- 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSN- 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSC-
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCC-
Confidence 468888888888888887665 788888888888888876 567788888888875433 32 5667777777765
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+|. .+++|+.|++++|.++.+|.. +++|++|++++|.. .
T Consensus 112 ~l~~l~~---------------------------------~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~ 154 (622)
T 3g06_A 112 PLTHLPA---------------------------------LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-A 154 (622)
T ss_dssp CCCCCCC---------------------------------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-S
T ss_pred cCCCCCC---------------------------------CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-C
Confidence 3443332 234455555555555555543 25666666666533 3
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.+|. .+++|+.|++++|.+.. +| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+. .+|. .+
T Consensus 155 ~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~ 220 (622)
T 3g06_A 155 SLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LP 220 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CC
T ss_pred CcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CC
Confidence 3443 24577788888776655 33 4568899999999999998864 589999999999765 4454 35
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPP 367 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~ 367 (709)
++|++|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|++++|....
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc
Confidence 899999999997655 55 456899999999999999987 67999999999998663
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=212.42 Aligned_cols=265 Identities=20% Similarity=0.209 Sum_probs=161.1
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 146 (709)
+.++.+++.++.+|..+ +++|++|++++|+|+.++ ..+..+++|++|+|++|.+....+ .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45566666666666543 356666666666666655 346666666666666666555433 466666666666666643
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCC
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~ 225 (709)
+..+++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++.. +..+++|+.|++++|....
T Consensus 93 l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 93 LRSVDPA-----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCCTT-----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccccCHH-----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 4444321 122355666677777766666666677777777777777777766643 6667777777777765443
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
..+..+.++++|++|++++|.+....|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++....+.. .-
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 333346777777777777777777777777777778888888887777664 3677778888888877654332210 00
Q ss_pred CCCCCEEEeeCcCCCccCCccccC--CCccceeecccc
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQ--VESLEELDISET 340 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~--l~~L~~L~L~~n 340 (709)
...++.+....+......|..+.. +..++..++.+|
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 112233334444444455554432 344555555544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-24 Score=224.71 Aligned_cols=242 Identities=18% Similarity=0.112 Sum_probs=154.2
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
++|++|++++|.+.+..|..+..+++|++|++++|.+..++. + ..+++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~------------------------~~l~~L~~L~Ls 88 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L------------------------ESLSTLRTLDLN 88 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E------------------------TTCTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h------------------------hhcCCCCEEECc
Confidence 345555555555544444445555555555555555543332 4 444555555555
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
+|.+... ...++|++|++++|.+..++. ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 5443221 122556666666666665443 235666666666666666555566666777777777766665544
Q ss_pred ccc-cCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 324 DTL-GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 324 ~~l-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
..+ ..+++|++|++++|.++.++... .+++|++|++++|..... .+.+..+++|+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-----------------------~~~~~~l~~L~ 217 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-----------------------GPEFQSAAGVT 217 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-----------------------CGGGGGGTTCS
T ss_pred HHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-----------------------hhhhcccCccc
Confidence 444 35677777777777777664333 377777777777763211 12255677888
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCeeccccccccccC
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
.|++++|++. .+|..+..+++|+.|++++|++. .+|..+..+++|+.|++.+|+.++..
T Consensus 218 ~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 218 WISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 8888888885 47888899999999999999998 77888899999999999988877653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=210.74 Aligned_cols=220 Identities=20% Similarity=0.146 Sum_probs=115.8
Q ss_pred eEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcccccc-CcccccccccccCCCccE
Q 005207 91 VEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~~ 168 (709)
++++.+++.++.+|.++ .++|+.|++++|.+....+ .|..+++|++|++++| .+..+ +..+ ..+++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~------~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAF------TGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT------TTCTTCCE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhc------CCccCCCE
Confidence 45555555555555433 3455566666555544443 3555556666666554 23333 2222 22455555
Q ss_pred EEccCCC-CCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCC
Q 005207 169 LILSGCL-KLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 169 L~Ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
|++++|. +....+..+..+++|++|++++|.+..+ |..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 6665554 3333345555555666666666555544 3345555556666665554433333335555556666665555
Q ss_pred CCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 247 KLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 247 ~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
+....+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5544444455555566666666555544 444555555666666655555444444555555666666555543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=218.79 Aligned_cols=241 Identities=21% Similarity=0.250 Sum_probs=128.2
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 146 (709)
+.++.++..++.+|..+. ++|++|+|++|+|+.++ ..+..+++|+.|+|++|++....+ .|.++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---------- 125 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL---------- 125 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC----------
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC----------
Confidence 444445555555554332 34555555555555442 334444444444444444333322 23344444
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCC
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~ 225 (709)
++|+|++|.+....+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|+.++
T Consensus 126 --------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 126 --------------------NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp --------------------CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred --------------------CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 444444444443344455566666666666666665554 34455555555555544444
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.++. ..+.++++|++|++++|.+..+| .+..+++|+.|++++|.+.+..|..+.++
T Consensus 186 ~i~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 186 YISE-----------------------GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp EECT-----------------------TTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred ccCh-----------------------hhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc
Confidence 4433 12344444555555555555443 24555666666666666555556666666
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEEccCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
++|++|++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6666666666666655566666666666666666666655543 3446667777776665
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=216.61 Aligned_cols=243 Identities=20% Similarity=0.226 Sum_probs=128.7
Q ss_pred eEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEE
Q 005207 91 VEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L 169 (709)
..++.++.+++.+|.++. ++++.|+|++|++....+ .|.++++|++|+|++| .+..+++. .+..+++|++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~-----~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG-----AFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGG-----GGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChh-----hccCCccCCEE
Confidence 344444444444444332 344444444444433332 3444555555555544 22222211 11123444444
Q ss_pred EccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCC
Q 005207 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248 (709)
Q Consensus 170 ~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~ 248 (709)
++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|+.+..++.
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------------- 178 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------------------- 178 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------------------
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-------------------
Confidence 554444444444455666666666666666665543 344555555555555444443332
Q ss_pred CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 249 ~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
..+.++++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..
T Consensus 179 ----~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 179 ----GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ----TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ----chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 234445555555555555555543 455666666666666665555666666666666666666666666666666
Q ss_pred CCccceeeccccccccCCcc-cccccCCcEEEccCCCC
Q 005207 329 VESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
+++|+.|+|++|.++.++.. +..+++|+.|++++|..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 66677777777666665544 34466777777776663
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-25 Score=254.37 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=118.3
Q ss_pred ehhhhcCCCCcceEEecCccccCcc-------------------cccCcCccEEEeeCCCCCCCC-CcC--CcCCceEEE
Q 005207 37 SAKAFSLMTNLGLLKINNVQLLEGL-------------------EYLSNKLRLLDWHRYPLKSLP-SNL--QLDKIVEFK 94 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~~~~-------------------~~l~~~L~~L~l~~~~l~~lp-~~~--~l~~L~~L~ 94 (709)
....+.++++|+.|+++++.....+ ... ++|++|+++++.++... ..+ .+++|++|+
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 3467888899999999886522211 122 36777777777654321 111 456777777
Q ss_pred cccC-Cccc--cccccccccCCcEEEcCCCCCCCCC----CC-CCCCCCccEEeccCCccccccCcccccccc-cccCCC
Q 005207 95 MCYS-RIEE--LWKGIKHLNMLKVMKLSHSENLIKT----PD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNK-LIFVES 165 (709)
Q Consensus 95 Ls~n-~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~----~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~-L~~l~~ 165 (709)
|+++ .++. ++.....+++|++|+|++|.+.... +. ...+++|++|++++|. ..+.. ..+.. ...+++
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~--~~l~~l~~~~~~ 212 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF--SALERLVTRCPN 212 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH--HHHHHHHHHCTT
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH--HHHHHHHHhCCC
Confidence 7766 4443 4344456777777777777643221 11 2356677777777663 11110 00011 112466
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCC-------ccccCcccccCCCCcEE-ecCCCCCCCcCcccccCCccC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTD-------IKELPLSIEHLFGLVQL-TLNDCKNLSSLPVAISSFQCL 237 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~-------i~~lp~~l~~l~~L~~L-~L~~~~~l~~lp~~l~~l~~L 237 (709)
|++|++++|...+.++..+..+++|+.|+++.+. +..++..+.++++|+.| .+.+. ....++..+..+++|
T Consensus 213 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRL 291 (594)
T ss_dssp CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTC
T ss_pred CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCC
Confidence 6667776664444455566666666666644332 23444455566666665 23221 112233333345556
Q ss_pred cEEeeeCCCCCCc-CchhhccCCCCCeeeccCc
Q 005207 238 RNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 238 ~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~L~~~ 269 (709)
++|++++|.+... ....+..+++|++|++.+|
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 6666665553221 1222345555555555555
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-24 Score=221.76 Aligned_cols=200 Identities=23% Similarity=0.275 Sum_probs=126.6
Q ss_pred CCccCcEEeeeCCCCCCcCchhh--ccCCCCCeeeccCccCcccCcccCCC-----CCCCEEeccCCCCCccccccccCC
Q 005207 233 SFQCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEVPSSIELL-----PGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l~~~~~~l-----~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.+..|..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 34555555555555554444433 45555555555555555544444333 566666666666555555556666
Q ss_pred CCCCEEEeeCcCCCcc--CCccc--cCCCccceeeccccccccCCc---c-cccccCCcEEEccCCCCCCCCCccccccc
Q 005207 306 KSLKTLNLSGCCKLEN--VPDTL--GQVESLEELDISETAVRRPPS---S-VFLMKNLRTLSFSGCNGPPSSASWHLHLP 377 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~--~~~~l--~~l~~L~~L~L~~n~i~~l~~---~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 377 (709)
++|++|++++|...+. ++..+ +.+++|++|++++|.++.++. . +..+++|++|++++|......
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 244 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------- 244 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------
Confidence 6666666666665443 22222 566777777777777764332 2 234677888888877643221
Q ss_pred cccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccc
Q 005207 378 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 378 ~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 457 (709)
..+.+..+++|+.|+|++|+++ .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|
T Consensus 245 -------------~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 245 -------------GAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp -------------CCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred -------------chhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 0122556788999999999885 5777666 889999999999998876 888999999999988
Q ss_pred c
Q 005207 458 K 458 (709)
Q Consensus 458 ~ 458 (709)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-24 Score=221.42 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=116.9
Q ss_pred cceEEecCccccCccc---ccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccccccccCCcEEEcCCC
Q 005207 47 LGLLKINNVQLLEGLE---YLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHS 121 (709)
Q Consensus 47 L~~L~l~~~~l~~~~~---~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~ 121 (709)
++.++++.+.+...+. ..+++|++|++++|.++.++. .+ .+++|++|+|++|+++.++. +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4444555555443221 112356666666666655553 22 55556666666665554443 555555555555555
Q ss_pred CCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc
Q 005207 122 ENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 122 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~ 201 (709)
++.... ..++|++|++++| .+..++.. .+++|++|++++|.+.+..+..++.+++|++|++++|.+.
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cccccc----CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 433211 2245555555554 22222211 1233444444444444444444444444444444444444
Q ss_pred ccCcccccCCCCcEEecCCCCCCCcCcccc-cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 202 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
.+ .+..+ ..+++|++|++++|.+... + ....+++|++|++++|.++.+|..+..
T Consensus 158 ~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 158 TV-----------------------NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp EE-----------------------EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred cc-----------------------cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcc
Confidence 32 22222 2334444444444443322 1 111244455555555555555444555
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC-ccCCccccCCCccceeeccc
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL-ENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~ 339 (709)
+++|+.|++++|.+. .+|..+..+++|+.|++++|... +.++..+..+++|+.|++.+
T Consensus 213 l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 555555555555433 34444455555555555555554 34444455555555555553
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-24 Score=246.35 Aligned_cols=268 Identities=17% Similarity=0.124 Sum_probs=183.1
Q ss_pred hhcCCCCcceEEecCccccCc----cc-ccCcCccEEEeeCC-CCCC--CCCcC-CcCCceEEEcccCCccc-----ccc
Q 005207 40 AFSLMTNLGLLKINNVQLLEG----LE-YLSNKLRLLDWHRY-PLKS--LPSNL-QLDKIVEFKMCYSRIEE-----LWK 105 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~~----~~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~Ls~n~i~~-----l~~ 105 (709)
.+..+++|+.|+++++.+.+. +. .+ ++|++|++++| .++. ++... .+++|++|+|++|.++. ++.
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 356789999999999987642 22 34 59999999998 4543 44444 78999999999998764 333
Q ss_pred ccccccCCcEEEcCCCCCCCCC---CC-CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCC-----
Q 005207 106 GIKHLNMLKVMKLSHSENLIKT---PD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK----- 176 (709)
Q Consensus 106 ~~~~l~~L~~L~Ls~~~~~~~~---~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~----- 176 (709)
....+++|+.|++++|...... +. +..+++|++|++++|..+..++..+.. +++|+.|+++.+..
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR------APQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH------CTTCSEEECSBCCCCCCHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc------CCcceEcccccccCccchh
Confidence 4457889999999999611111 11 345799999999999666665544443 67899999877643
Q ss_pred -CCcCCccccCCCcccee-eccCCCccccCcccccCCCCcEEecCCCCCCCc-CcccccCCccCcEEeeeCCCCCCcCch
Q 005207 177 -LRKFPHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLKLSGCSKLKKFPQ 253 (709)
Q Consensus 177 -~~~~~~~l~~l~~L~~L-~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~Ls~~~~~~~~~~ 253 (709)
...++..+.++++|+.| .+.......++..+..+++|++|++++|..... ++..+..+++|++|++++|......+.
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 12344567889999999 566655567777778899999999999883322 233356789999999999822222334
Q ss_pred hhccCCCCCeeeccC---------ccCcc--cCcccCCCCCCCEEeccCCCCCcccccccc-CCCCCCEEEee
Q 005207 254 IVTTMEDLSELNLDG---------TSITE--VPSSIELLPGLELLNLNDCKNFARVPSSIN-GLKSLKTLNLS 314 (709)
Q Consensus 254 ~~~~l~~L~~L~L~~---------~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~L~ 314 (709)
....+++|++|++.+ +.++. +......+++|+.|.+..+.+.......+. .+++|+.|+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 445688999998844 33331 111123467777776666555544333333 46777777777
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-23 Score=213.59 Aligned_cols=250 Identities=20% Similarity=0.176 Sum_probs=184.9
Q ss_pred ccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcccc--ccCcccc-cccccccCCCccEEEccCCCCCCcCCccc
Q 005207 108 KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR--KVHPSLL-LHNKLIFVESLKILILSGCLKLRKFPHVV 184 (709)
Q Consensus 108 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~--~~~~~i~-~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l 184 (709)
+..++|+.|++++|.+ ..++.+... |+.|++++|. +. .++..+. ..-....+++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455666666666665 222222222 6666666653 22 2232221 00011136778888888888888788765
Q ss_pred --cCCCccceeeccCCCccccCcccccC-----CCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--Cchhh
Q 005207 185 --GSMECLQELLLDGTDIKELPLSIEHL-----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--FPQIV 255 (709)
Q Consensus 185 --~~l~~L~~L~l~~~~i~~lp~~l~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~~ 255 (709)
+.+++|++|++++|.++.+|..+..+ ++|++|++++|......|..++++++|++|++++|.+.+. .+..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 88899999999999988888777777 8999999999887766667888899999999999887654 23333
Q ss_pred --ccCCCCCeeeccCccCcccCc----ccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 256 --TTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 256 --~~l~~L~~L~L~~~~i~~l~~----~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+. .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 788999999999999885432 24577899999999998877664 44566899999999998876 6777666
Q ss_pred CCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 329 VESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
++|+.|++++|.++.+|. +..+++|++|++++|+.
T Consensus 274 -~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred -CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 899999999999998877 88899999999999974
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-22 Score=220.49 Aligned_cols=239 Identities=19% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
++|++|++++|.+.+..|..++.+++|++|++++|.+..+++ +..+++|+.|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N---------------------- 90 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN---------------------- 90 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS----------------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC----------------------
Confidence 456666666666666555666666666666666666654443 555555555555554
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
.+.... ..++|++|++++|.+..++. ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|
T Consensus 91 --~l~~l~-----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 91 --YVQELL-----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp --EEEEEE-----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred --cCCCCC-----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 322111 12455555555555554443 234566666666666665555566666666666666666665555
Q ss_pred cccc-CCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 324 DTLG-QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 324 ~~l~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
..+. .+++|+.|++++|.++.++... .+++|++|++++|.... ..|.+..+++|+
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~l~~L~ 217 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVT 217 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCS
T ss_pred HHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCC-----------------------CCHhHcCCCCcc
Confidence 5544 5666666666666666554332 46677777777766321 112255667888
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCeecccccccc
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRL 460 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L 460 (709)
.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..+..++.|+.|++..+..+
T Consensus 218 ~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 218 WISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp EEECTTSCCC--EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEEecCCcCc--ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 8888888885 47888889999999999999998 77888888999999988755443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=213.05 Aligned_cols=224 Identities=16% Similarity=0.140 Sum_probs=178.2
Q ss_pred ccCcccccC----CCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 202 ELPLSIEHL----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 202 ~lp~~l~~l----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
.+|..+..+ ++|+.|++++|......|..+..+++|++|+|++|.+.+..| +..+++|++|+|++|.++.++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 344444443 378888888877666666778888899999998888776555 78889999999999999877643
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc-CCcccc-cccCC
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVF-LMKNL 355 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~-~l~~L 355 (709)
++|+.|++++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 8999999999988776554 46789999999999888888888889999999999999986 455554 68999
Q ss_pred cEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 005207 356 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435 (709)
Q Consensus 356 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 435 (709)
++|++++|.... +|....+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+
T Consensus 172 ~~L~Ls~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCcccc------------------------ccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCc
Confidence 999999987321 123446788999999999985 366668888999999999999
Q ss_pred CcccChhhhcCCCcCeecccccccc
Q 005207 436 FVTLPASINSLLNLKELEMEDCKRL 460 (709)
Q Consensus 436 l~~lp~~i~~l~~L~~L~L~~c~~L 460 (709)
++.+|..+..+++|+.|++++|+..
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CcccchhhccCCCCCEEEcCCCCCc
Confidence 9988888888888999999888643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=186.05 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=129.5
Q ss_pred EEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccc
Q 005207 70 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKL 147 (709)
Q Consensus 70 ~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l 147 (709)
..+..+..+..+|..+. ++|++|++++|+++.++. .+..+++|++|++++|++....+ .|.++++|++|++++|. +
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence 34555666777777553 578888888888887764 67777788888888777655544 46667777777777652 3
Q ss_pred cccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCC-
Q 005207 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS- 225 (709)
Q Consensus 148 ~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~- 225 (709)
..++ +..+..+++|++|++++|.+..++. .+..+++|++|++++|....
T Consensus 89 ~~~~-----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 89 QSLA-----------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp CEEC-----------------------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CccC-----------------------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence 3332 3333444444444444444443333 34444444444444443332
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCC----eeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS----ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~----~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
.+|..+.++++|++|++++|.+....+..+..+++|+ .|++++|.+..++.......+|+.|++++|.+.+..+..
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhH
Confidence 2344455555556666655555554444454444444 677777777766665555556777777777655444444
Q ss_pred ccCCCCCCEEEeeCcCCCc
Q 005207 302 INGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~ 320 (709)
+..+++|++|++++|+...
T Consensus 220 ~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTCCSCCEEECCSSCBCC
T ss_pred hcccccccEEEccCCcccc
Confidence 5666677777777666543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=186.18 Aligned_cols=201 Identities=20% Similarity=0.215 Sum_probs=106.1
Q ss_pred ccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 184 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
++++++++.+++++++++.+|..+. ++++.|++++|......+..+.++++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----------------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----------------
Confidence 3445556666666666666554442 345555555544433333444445555555555444
Q ss_pred eeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 264 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.++.. +.+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 67 -------l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 67 -------LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -------CCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -------cCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 4433332 34444444444444432 33444445555555555555555444455666666666666666666
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 423 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 423 (709)
.+|... +..+++|+.|+|++|++. ...+..+..+
T Consensus 138 ~~~~~~---------------------------------------------~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 171 (290)
T 1p9a_G 138 TLPPGL---------------------------------------------LTPTPKLEKLSLANNNLT-ELPAGLLNGL 171 (290)
T ss_dssp CCCTTT---------------------------------------------TTTCTTCCEEECTTSCCS-CCCTTTTTTC
T ss_pred ccChhh---------------------------------------------cccccCCCEEECCCCcCC-ccCHHHhcCc
Confidence 554332 233444555555555553 2222334556
Q ss_pred CCCCEEEcCCCCCcccChhhhcCCCcCeecccccc
Q 005207 424 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458 (709)
Q Consensus 424 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 458 (709)
++|+.|+|++|+++.+|..+..+++|+.|++++|+
T Consensus 172 ~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 66666666666666666666666666666666665
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=184.30 Aligned_cols=196 Identities=23% Similarity=0.258 Sum_probs=148.1
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+.+++++++++++++.+.. +|..+ .++++.|++++|.+..++ ..+..+++|+.|++++|.+.+..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4456666777776655443 33322 257888888888888664 5688999999999999987654332 7899999
Q ss_pred EEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcccccc
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA 389 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (709)
+|++++|.+. .+|..+..+++|+.|++++|.++.++...
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---------------------------------------- 119 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA---------------------------------------- 119 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST----------------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH----------------------------------------
Confidence 9999998765 67888899999999999999998776321
Q ss_pred ccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh-hcCCCcCeeccccccccccCCCC--
Q 005207 390 LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQFLPQL-- 466 (709)
Q Consensus 390 ~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~L~~lp~l-- 466 (709)
+.++++|+.|+|++|++. ...+..+..+++|+.|+|++|+++.+|..+ ..+++|+.|++++|+ ++.+|.-
T Consensus 120 -----~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~ 192 (290)
T 1p9a_G 120 -----LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192 (290)
T ss_dssp -----TTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred -----HcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhc
Confidence 456677788888888775 445566789999999999999999999764 789999999999995 5666642
Q ss_pred -CCCccEEEecCCC
Q 005207 467 -PPNIIFVKVNGCS 479 (709)
Q Consensus 467 -p~sL~~L~i~~C~ 479 (709)
.++|+.|++.+.|
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 1345556555443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=182.93 Aligned_cols=219 Identities=19% Similarity=0.206 Sum_probs=145.0
Q ss_pred eEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCC
Q 005207 49 LLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 49 ~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~ 125 (709)
..+..+..+...+..+|.+|++|++++|.++.++. .+ .+++|++|++++|+++.++. .+..+++|++|+|++|++..
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 45556666665566677899999999999999986 44 89999999999999998874 68999999999999999877
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCC-cCCccccCCCccceeeccCCCcccc
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR-KFPHVVGSMECLQELLLDGTDIKEL 203 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~l 203 (709)
..+ .+.++++|++|++++| .+..++.. .+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.++.+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET-NLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTC-----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cChhhhcCCccccEEECCCC-CccccCch-----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 764 5889999999999987 34443321 12235566666666666554 2456666666666666666666544
Q ss_pred Cc-ccccCCCCcEEecCCCCCCCcCcccccCCccCc-EEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCC
Q 005207 204 PL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLR-NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IEL 280 (709)
Q Consensus 204 p~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~-~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~ 280 (709)
+. .+..+.+|+ .|. .|++++|.+....+..+.. .+|++|++++|.++.+|.. +..
T Consensus 165 ~~~~~~~l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 165 YCTDLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp CGGGGHHHHTCT---------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred CHHHhhhhhhcc---------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 32 333333333 111 4555555544333333322 2566666666666655543 456
Q ss_pred CCCCCEEeccCCCCC
Q 005207 281 LPGLELLNLNDCKNF 295 (709)
Q Consensus 281 l~~L~~L~L~~~~~~ 295 (709)
+++|+.|++++|++.
T Consensus 223 l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 223 LTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSCCEEECCSSCBC
T ss_pred cccccEEEccCCccc
Confidence 666677777666544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=178.58 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred cceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 190 L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
.+.++++++.++.+|..+. .+|+.|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555554332 34555555554433222233444555555555544444333333344444444444444
Q ss_pred cCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS- 348 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~- 348 (709)
.+..++ +..+..+++|++|++++|.+....+..++.+++|+.|++++|.+..++..
T Consensus 96 ~l~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 96 KLQALP-----------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CCCCCC-----------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCcCC-----------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 444433 33444555555555555555554455555666666666666666655443
Q ss_pred cccccCCcEEEccCC
Q 005207 349 VFLMKNLRTLSFSGC 363 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~ 363 (709)
+..+++|++|++++|
T Consensus 153 ~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 153 FDKLTSLKELRLYNN 167 (270)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCcccceeEecCC
Confidence 233344444444433
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=177.07 Aligned_cols=177 Identities=20% Similarity=0.203 Sum_probs=91.9
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
|+.|++++|.+....+..+..+++|++|++++|.++.+|..+ ..+++|++|++++|......+..+.++++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 444444444444444445555666666666666665555433 4455555555555443333333345555666666666
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 555555555555556666666666655555443 4555555555555555444444444455555555555554443333
Q ss_pred ccccCCCccceeecccccc
Q 005207 324 DTLGQVESLEELDISETAV 342 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i 342 (709)
..+..+++|+.|++++|.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred HHhccccCCCEEEecCCCe
Confidence 3344445555555555444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=186.01 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=47.2
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+. +.+++|+
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~ 225 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIR 225 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTH
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHH
Confidence 34444455555554444444444444555555555555555544432 455555555555555433 2244555
Q ss_pred EEEeeCcCCCccCCccccCCC
Q 005207 310 TLNLSGCCKLENVPDTLGQVE 330 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~ 330 (709)
.|++..|...+.+|..++.+.
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHhCCCcccCcccccC
Confidence 666666666666665555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=178.49 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCEEeccCCC-CCCCCCCCCCCCC-CCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 399 RSLTKLDLSDCG-LGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 399 ~~L~~L~Ls~n~-l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
++|+.|++++|+ +. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 566667777774 53 3334567777 7888888888888877764 677777777777653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=180.33 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=101.1
Q ss_pred CCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 187 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+++|+.|+++++.+..++ .+..+++|+.|++++|... .++ .+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 444455555555444443 2444555555555554322 222 3444555555555555544444444455555555555
Q ss_pred cCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccC
Q 005207 267 DGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 345 (709)
Q Consensus 267 ~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l 345 (709)
++|.+..++.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555544432 34455555555555544433333344445555555555444433333344444444444444444433
Q ss_pred CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 005207 346 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425 (709)
Q Consensus 346 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 425 (709)
+... +..+++|+.|++++|.+. +.+++
T Consensus 197 ~~~~---------------------------------------------~~~l~~L~~L~l~~N~~~--------~~~~~ 223 (272)
T 3rfs_A 197 PDGV---------------------------------------------FDRLTSLQYIWLHDNPWD--------CTCPG 223 (272)
T ss_dssp CTTT---------------------------------------------TTTCTTCCEEECCSSCBC--------CCTTT
T ss_pred CHHH---------------------------------------------HhCCcCCCEEEccCCCcc--------ccCcH
Confidence 3221 445556666666666553 23456
Q ss_pred CCEEEcCCCCCc-ccChhhhcCCC
Q 005207 426 LNELYLSKNNFV-TLPASINSLLN 448 (709)
Q Consensus 426 L~~L~L~~n~l~-~lp~~i~~l~~ 448 (709)
|+.|+++.|++. .+|.++..++.
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 666666666666 56655554433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-20 Score=193.24 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=161.4
Q ss_pred CceEEEcccCCccccccccccc--cCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccc-cCcccccccccccCCC
Q 005207 89 KIVEFKMCYSRIEELWKGIKHL--NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRK-VHPSLLLHNKLIFVES 165 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~l~~ 165 (709)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..-.. ++.. +..+++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~------~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI------LSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH------HTTBCC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH------HhhCCC
Confidence 3566777776665 3445555 777888888877766666667778888888888742212 3322 233567
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCC-Ccc--ccCcccccCCCCcEEecCCCCCCCc--CcccccCCc-cCcE
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIK--ELPLSIEHLFGLVQLTLNDCKNLSS--LPVAISSFQ-CLRN 239 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~--~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~-~L~~ 239 (709)
|++|++++|.+.+..+..++.+++|++|++++| .++ .++..+..+++|++|++++|..+.. ++..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 788888888777677777777888888888887 566 3666677788888888888733332 455566777 8888
Q ss_pred EeeeCCC--CC-CcCchhhccCCCCCeeeccCcc-Cc-ccCcccCCCCCCCEEeccCCCC-CccccccccCCCCCCEEEe
Q 005207 240 LKLSGCS--KL-KKFPQIVTTMEDLSELNLDGTS-IT-EVPSSIELLPGLELLNLNDCKN-FARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 240 L~Ls~~~--~~-~~~~~~~~~l~~L~~L~L~~~~-i~-~l~~~~~~l~~L~~L~L~~~~~-~~~l~~~~~~l~~L~~L~L 313 (709)
|++++|. +. ..++..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|.. .......+..+++|++|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 8888873 33 3456666777888888888877 44 4555667778888888887752 1222224667778888888
Q ss_pred eCcCCCccCCccccCC-CccceeeccccccccC
Q 005207 314 SGCCKLENVPDTLGQV-ESLEELDISETAVRRP 345 (709)
Q Consensus 314 ~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~l 345 (709)
++| ... ..+..+ .++..|++++|.++..
T Consensus 280 ~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 280 FGI-VPD---GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTS-SCT---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred cCc-cCH---HHHHHHHhhCcceEEecccCccc
Confidence 877 111 123333 2366666777777644
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=175.66 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=79.5
Q ss_pred CceEEEcccCCcccccc-ccccccCCcEEEcCCCC-CCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 89 KIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSE-NLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~-~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
+|++|++++|+|+.++. .+..+++|++|++++|+ +....+ .|.++++|++|++++|..+..+++.. +..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-----f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS-----EECCTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH-----hCCCCC
Confidence 44445555544444443 34444444444444443 222222 24444444444444422333333211 111233
Q ss_pred ccEEEccCCCCCCcCCccccCCCccc---eeeccCC-CccccCcc-cccCCCCc-EEecCCCCCCCcCcccccCCccCcE
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQ---ELLLDGT-DIKELPLS-IEHLFGLV-QLTLNDCKNLSSLPVAISSFQCLRN 239 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~---~L~l~~~-~i~~lp~~-l~~l~~L~-~L~L~~~~~l~~lp~~l~~l~~L~~ 239 (709)
|++|++++|.+.+ +|. +..+++|+ +|++++| .++.+|.. +..+++|+ .|++++|... .+|......++|++
T Consensus 107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 3333333333322 222 33333333 4444444 44433322 33344444 4444433222 22222111244555
Q ss_pred EeeeCCC-CCCcCchhhccC-CCCCeeeccCccCcccCcccCCCCCCCEEeccCC
Q 005207 240 LKLSGCS-KLKKFPQIVTTM-EDLSELNLDGTSITEVPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 240 L~Ls~~~-~~~~~~~~~~~l-~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~ 292 (709)
|++++|. +....+..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 5555553 333333444455 5555555555555555543 3455555555443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=182.01 Aligned_cols=226 Identities=20% Similarity=0.158 Sum_probs=180.4
Q ss_pred CCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccc--cCCCccceeeccCCCcccc-C----c
Q 005207 133 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV--GSMECLQELLLDGTDIKEL-P----L 205 (709)
Q Consensus 133 l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~i~~l-p----~ 205 (709)
...++.+.+.++..-.. .+..+.....+++|++|++++|.+.+..|..+ ..+++|++|++++|.+... + .
T Consensus 63 ~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ---LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHH---HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHH---HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34577788877632111 11111122234679999999999999998887 8999999999999999852 2 3
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--C--chhhccCCCCCeeeccCccCcccCcc----
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--F--PQIVTTMEDLSELNLDGTSITEVPSS---- 277 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--~--~~~~~~l~~L~~L~L~~~~i~~l~~~---- 277 (709)
.+..+++|++|++++|......+..++.+++|++|++++|.+.+. . +..+..+++|++|++++|.++.++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 345789999999999988777778899999999999999987643 2 23346889999999999999876652
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCC---CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccC
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGL---KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l---~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~ 354 (709)
++.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCC
Confidence 5778999999999999988878777776 69999999999877 6677664 899999999999998866 678899
Q ss_pred CcEEEccCCCC
Q 005207 355 LRTLSFSGCNG 365 (709)
Q Consensus 355 L~~L~L~~~~~ 365 (709)
|+.|++++|+.
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 99999999984
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-20 Score=196.41 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=33.1
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc--cCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEe
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 241 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 241 (709)
++++.|++++|.+.+..+. +..+++|++|++++|.+.. ++..+..+++|++|++++|......+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444433333 2234444444444444431 333344444444444444433223333333344444444
Q ss_pred eeCC
Q 005207 242 LSGC 245 (709)
Q Consensus 242 Ls~~ 245 (709)
+++|
T Consensus 149 L~~~ 152 (336)
T 2ast_B 149 LSGC 152 (336)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-20 Score=200.92 Aligned_cols=254 Identities=15% Similarity=0.155 Sum_probs=133.2
Q ss_pred ceEEEcccCCccccccccccccCCcEEEcCCCCCCCCC-----CCCCCCCCccEEeccCCc--ccc-ccCcccccc-ccc
Q 005207 90 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT--KLR-KVHPSLLLH-NKL 160 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~-----~~~~~l~~L~~L~L~~~~--~l~-~~~~~i~~l-~~L 160 (709)
|+...++...+..++..+..+++|+.|+|++|.+.... ..+..+++|++|+|++|. .+. .+|..+..+ ..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 33334444455556666677777777777777655432 236677777777777762 111 233333211 123
Q ss_pred ccCCCccEEEccCCCCCC----cCCccccCCCccceeeccCCCcc-----ccCcccccC---------CCCcEEecCCCC
Q 005207 161 IFVESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHL---------FGLVQLTLNDCK 222 (709)
Q Consensus 161 ~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l---------~~L~~L~L~~~~ 222 (709)
..+++|++|++++|.+.. .+|..+..+++|++|++++|.+. .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445677777777777665 35666677777777777777765 233333333 566666666655
Q ss_pred CC-CcCc---ccccCCccCcEEeeeCCCCCC-----cCchhhccCCCCCeeeccCccC-----cccCcccCCCCCCCEEe
Q 005207 223 NL-SSLP---VAISSFQCLRNLKLSGCSKLK-----KFPQIVTTMEDLSELNLDGTSI-----TEVPSSIELLPGLELLN 288 (709)
Q Consensus 223 ~l-~~lp---~~l~~l~~L~~L~Ls~~~~~~-----~~~~~~~~l~~L~~L~L~~~~i-----~~l~~~~~~l~~L~~L~ 288 (709)
.. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.+ ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 43 2233 234445566666666655442 1222444555555555555555 23444445555555555
Q ss_pred ccCCCCCcc----cccccc--CCCCCCEEEeeCcCCCc----cCCccc-cCCCccceeeccccccc
Q 005207 289 LNDCKNFAR----VPSSIN--GLKSLKTLNLSGCCKLE----NVPDTL-GQVESLEELDISETAVR 343 (709)
Q Consensus 289 L~~~~~~~~----l~~~~~--~l~~L~~L~L~~~~~~~----~~~~~l-~~l~~L~~L~L~~n~i~ 343 (709)
+++|.+... ++..+. .+++|++|++++|.+.. .+|..+ .++++|+.|++++|.++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 555554433 233332 24555555555554443 233333 33444444444444444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=178.26 Aligned_cols=189 Identities=17% Similarity=0.253 Sum_probs=102.5
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
++|++|+++++.++.+|....+++|++|++++|+++.++. +..+++|++|+|++|++.. .+.+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n- 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTST- 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTS-
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCC-
Confidence 4677777777777766643366777777777777776665 6677777777777776433 345666666666666665
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++.++.
T Consensus 118 ~l~~~~~-------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-------------------- 168 (308)
T 1h6u_A 118 QITDVTP-------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-------------------- 168 (308)
T ss_dssp CCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred CCCCchh-------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--------------------
Confidence 2333221 2234445555555554433222 4444445555554444444443
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+..+++|+.|++++|.+....+ +..+++|++|++++|.+..++. +..+++|+.|++++|++
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred -----hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 4444455555555444433222 4445555555555555554442 45555555555555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=180.13 Aligned_cols=193 Identities=18% Similarity=0.271 Sum_probs=136.0
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
.+++|++|+++++.++.++ ++..+++|+.|+|++|.+....+ +..+++|++|++++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n--------------------- 95 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN--------------------- 95 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC---------------------
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC---------------------
Confidence 4556666666666666554 45556666666666655443333 555555555555554
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
.+.+. ..+..+++|++|++++|.++.++. +..+++|+.|++++|.. ..++. +..+++|++|++++|
T Consensus 96 ---------~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 96 ---------PLKNV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp ---------CCSCC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS
T ss_pred ---------cCCCc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCC
Confidence 43321 235566667777777777776654 67777777777777654 33444 777889999999998
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
.+....+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|....
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7765433 8899999999999999998876 8899999999999998876543 7899999999999998644
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=180.07 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=141.7
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~ 145 (709)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|. .|.++++|++|+|++|++...++ .|.++++|+++.+.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45667777777777655 4577777777777777774 46777777777777777655433 36677777665444444
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC-CCccccCcc-cccC-CCCcEEecCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG-TDIKELPLS-IEHL-FGLVQLTLNDCK 222 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~lp~~-l~~l-~~L~~L~L~~~~ 222 (709)
.+..+++.. +..+++|++|++++|.+....+..+....++..|++.+ +.+..++.. +..+ ..++.|++++|.
T Consensus 91 ~l~~l~~~~-----f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 91 NLLYINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TCCEECTTS-----BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccccCchh-----hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 566555432 22355666666666666555555555555666666644 455555542 3333 346666666644
Q ss_pred CCCcCcccccCCccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 223 NLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 223 ~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
++.+|.......+|++|++.++...+.+| ..+.++++|++|++++|+++.+|.. .+.+|+.|.+.++..++.+|.
T Consensus 166 -i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 166 -IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp -CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred -ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence 33444444445566666666555444444 3456677777777777777776652 245566666655555555553
Q ss_pred ccCCCCCCEEEeeC
Q 005207 302 INGLKSLKTLNLSG 315 (709)
Q Consensus 302 ~~~l~~L~~L~L~~ 315 (709)
+..+++|+.+++.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 45556666666543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-20 Score=199.87 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCCEEEeeCcCCC-ccCC---ccccCCCccceeeccccccc------cCCcccccccCCcEEEccCCCCCCCCCccccc
Q 005207 306 KSLKTLNLSGCCKL-ENVP---DTLGQVESLEELDISETAVR------RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375 (709)
Q Consensus 306 ~~L~~L~L~~~~~~-~~~~---~~l~~l~~L~~L~L~~n~i~------~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 375 (709)
++|++|++++|.+. ..++ ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.....
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~------- 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL------- 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------
Confidence 45555555555443 2222 23344555555555555554 1222445555666666665552100
Q ss_pred cccccccCccccccccCC-CCCCCCCCCEEeccCCCCCCC---CCCCCC--CCCCCCCEEEcCCCCCcc-----cChhh-
Q 005207 376 LPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEG---AIPSDI--GNLHSLNELYLSKNNFVT-----LPASI- 443 (709)
Q Consensus 376 ~~~~~~~~~~~~~~~~lp-~l~~l~~L~~L~Ls~n~l~~~---~~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~i- 443 (709)
....+| .+..+++|+.|+|++|.+... .++..+ +.+++|+.|+|++|.++. +|..+
T Consensus 232 ------------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 232 ------------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp ------------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 000011 144556677777777766421 123444 336777777777777775 67666
Q ss_pred hcCCCcCeecccccc
Q 005207 444 NSLLNLKELEMEDCK 458 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~ 458 (709)
.++++|+.|++++|+
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 557777888777775
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=176.39 Aligned_cols=223 Identities=18% Similarity=0.220 Sum_probs=128.1
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCCCCCcCc-hhhccCCCCCe-eeccC
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSE-LNLDG 268 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~-L~L~~ 268 (709)
.++.++++++++|..+ ..++++|+|++|+ ++.+|. +|.++++|++|+|++|.+.+.++ ..+.+++++.+ +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455555555555544 2455566666544 333432 45666666666666666554443 34455555543 34445
Q ss_pred ccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCC-CccceeeccccccccC
Q 005207 269 TSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQV-ESLEELDISETAVRRP 345 (709)
Q Consensus 269 ~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l-~~L~~L~L~~n~i~~l 345 (709)
|.+..++ ..+..+++|++|++++|.+....+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 6666553 3456666666666666665554444444555666777766655554443 34444 3577778888887777
Q ss_pred CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCC-CCCCCCC
Q 005207 346 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDIGNLH 424 (709)
Q Consensus 346 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~ 424 (709)
+...+...+|++|++.++. .+ +.+| ..+..++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n---------------------------------------------~l--~~i~~~~f~~l~ 202 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNN---------------------------------------------NL--EELPNDVFHGAS 202 (350)
T ss_dssp CTTSSTTEEEEEEECTTCT---------------------------------------------TC--CCCCTTTTTTEE
T ss_pred ChhhccccchhHHhhccCC---------------------------------------------cc--cCCCHHHhccCc
Confidence 7666555555555555433 22 2233 3456677
Q ss_pred CCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCC
Q 005207 425 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL 466 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 466 (709)
+|++|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+
T Consensus 203 ~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 777777777777777652 3556666666666666666643
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=176.46 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=122.1
Q ss_pred cCcEEeeeCCCCCCcCchhh--ccCCCCCeeeccCccCccc-C----cccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEV-P----SSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l-~----~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444433 4444555555555544421 1 122345566666666666555555566666666
Q ss_pred CEEEeeCcCCCcc--C--CccccCCCccceeeccccccccCCcc----cccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 309 KTLNLSGCCKLEN--V--PDTLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 309 ~~L~L~~~~~~~~--~--~~~l~~l~~L~~L~L~~n~i~~l~~~----~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
++|++++|...+. + +..++.+++|++|++++|.++.++.. +..+++|++|++++|......+.
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------- 242 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------- 242 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---------
Confidence 6666666665432 1 22335677777777777777655542 34567888888888774332110
Q ss_pred ccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 381 ~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.+..+..+++|+.|+|++|++. .+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|+.
T Consensus 243 ----------~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 243 ----------SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ----------CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ----------hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 0111223468889999999885 4677664 789999999999988765 67888999999988863
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-19 Score=192.12 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=106.6
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccC-----cccccCC-CCcEEecCCCCCCCcCcccccCC-----cc
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-----LSIEHLF-GLVQLTLNDCKNLSSLPVAISSF-----QC 236 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-----~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l-----~~ 236 (709)
+++++.|.+.+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3566777777777777777777888888888877655 4566676 77788887776555545444443 77
Q ss_pred CcEEeeeCCCCCCcCchhh----ccC-CCCCeeeccCccCcccCcc-----cCC-CCCCCEEeccCCCCCcc----cccc
Q 005207 237 LRNLKLSGCSKLKKFPQIV----TTM-EDLSELNLDGTSITEVPSS-----IEL-LPGLELLNLNDCKNFAR----VPSS 301 (709)
Q Consensus 237 L~~L~Ls~~~~~~~~~~~~----~~l-~~L~~L~L~~~~i~~l~~~-----~~~-l~~L~~L~L~~~~~~~~----l~~~ 301 (709)
|++|++++|.+....+..+ ..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+... ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 7777777777665555433 333 6777777777777654431 333 24677777776665432 2233
Q ss_pred ccCCC-CCCEEEeeCcCCCccCCcc----ccCC-Cccceeecccccccc
Q 005207 302 INGLK-SLKTLNLSGCCKLENVPDT----LGQV-ESLEELDISETAVRR 344 (709)
Q Consensus 302 ~~~l~-~L~~L~L~~~~~~~~~~~~----l~~l-~~L~~L~L~~n~i~~ 344 (709)
+..++ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 33443 6666666666554433322 2223 355555555555553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=162.68 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=116.4
Q ss_pred ccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 189 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
..+.++++++.++.+|..+. .+++.|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666665544 4666666666665555555566677777777777766666666666777777777777
Q ss_pred ccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCc
Q 005207 269 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 347 (709)
Q Consensus 269 ~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~ 347 (709)
|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776653 35667777777777776665555556667777777777776665555567777777777777777776655
Q ss_pred -ccccccCCcEEEccCCCC
Q 005207 348 -SVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 348 -~~~~l~~L~~L~L~~~~~ 365 (709)
.+..+++|++|++++|+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 455677777777777763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=161.15 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=123.2
Q ss_pred CCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
+.++++++++.++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34566667777777766543 5677777777777666666677777777777777777666666677777777777777
Q ss_pred cccccCCcc-cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 005207 340 TAVRRPPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 418 (709)
Q Consensus 340 n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~ 418 (709)
|.++.++.. +..+++|++|++++|...... ...+..+++|+.|+|++|++. +..+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 149 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLP----------------------SGVFDRLTKLKELRLNTNQLQ-SIPAG 149 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcC----------------------hhHhccCCcccEEECcCCcCC-ccCHH
Confidence 777766643 456777777777777633111 011567788888888888885 44445
Q ss_pred CCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 419 DIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 419 ~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
.+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 68888888888888888887765 56778888888888885
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-17 Score=180.90 Aligned_cols=192 Identities=18% Similarity=0.258 Sum_probs=117.0
Q ss_pred hhcCCC-----CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCc
Q 005207 40 AFSLMT-----NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLK 114 (709)
Q Consensus 40 ~f~~l~-----~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 114 (709)
+|.+++ +|+.|++++|.+.+-...++++|++|++++|.++.+| ..+++|++|+|++|+|+.+|. +.. +|+
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLK 123 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence 555554 6777777777766533334466777777777777777 345677777777777777666 443 777
Q ss_pred EEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceee
Q 005207 115 VMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 194 (709)
.|+|++|++.. +|. .+++|+.|++++| .+..+|. .+++|++|++++|.+.+ +|. +. ++|+.|+
T Consensus 124 ~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE--LPALLEYINADNN-QLTMLPE---------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALD 186 (571)
T ss_dssp EEECCSSCCSC-CCC--CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEE
T ss_pred EEECCCCcCCC-CCC--cCccccEEeCCCC-ccCcCCC---------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEE
Confidence 77777776555 333 5667777777776 3444443 14566677777766555 444 44 6677777
Q ss_pred ccCCCccccCcccccCCCC-------cEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhcc
Q 005207 195 LDGTDIKELPLSIEHLFGL-------VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTT 257 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 257 (709)
+++|.++.+|. +.. +| +.|++++|. +..+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77777666665 433 45 666666543 3345555555666666666666655555554443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-18 Score=185.44 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=109.9
Q ss_pred EEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-----ccccccc-CCcEEEcCCCCCCCCCC-CCCCC-----CCc
Q 005207 71 LDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-----KGIKHLN-MLKVMKLSHSENLIKTP-DFTEA-----PNL 136 (709)
Q Consensus 71 L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-----~~~~~l~-~L~~L~Ls~~~~~~~~~-~~~~l-----~~L 136 (709)
++++.+.+......+ .+.+|++|+|++|.++..+ +.+..++ +|++|+|++|++....+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 445555555433333 3344666666666666544 3445555 56666666665443322 12221 455
Q ss_pred cEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc----ccCC-CccceeeccCCCccccCc-----c
Q 005207 137 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV----VGSM-ECLQELLLDGTDIKELPL-----S 206 (709)
Q Consensus 137 ~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~----l~~l-~~L~~L~l~~~~i~~lp~-----~ 206 (709)
++|+|++| .+.+..+.. +..+ ++|++|++++|.++..+. .
T Consensus 83 ~~L~Ls~n------------------------------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 83 TSLNLSGN------------------------------FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CEEECCSS------------------------------CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cEEECcCC------------------------------cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 55555554 333322221 2222 445555555555443322 1
Q ss_pred ccc-CCCCcEEecCCCCCCC----cCcccccCCc-cCcEEeeeCCCCCCcCchh----hccC-CCCCeeeccCccCcc--
Q 005207 207 IEH-LFGLVQLTLNDCKNLS----SLPVAISSFQ-CLRNLKLSGCSKLKKFPQI----VTTM-EDLSELNLDGTSITE-- 273 (709)
Q Consensus 207 l~~-l~~L~~L~L~~~~~l~----~lp~~l~~l~-~L~~L~Ls~~~~~~~~~~~----~~~l-~~L~~L~L~~~~i~~-- 273 (709)
+.. ..+|++|++++|.... .++..+..++ +|++|++++|.+....+.. +..+ ++|++|+|++|.+..
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 222 2355555555544332 1222223333 5555555555554443322 2233 356666666665554
Q ss_pred ---cCcccCC-CCCCCEEeccCCCCCcccc----ccccCCCCCCEEEeeCcCCCc-------cCCccccCCCccceeecc
Q 005207 274 ---VPSSIEL-LPGLELLNLNDCKNFARVP----SSINGLKSLKTLNLSGCCKLE-------NVPDTLGQVESLEELDIS 338 (709)
Q Consensus 274 ---l~~~~~~-l~~L~~L~L~~~~~~~~l~----~~~~~l~~L~~L~L~~~~~~~-------~~~~~l~~l~~L~~L~L~ 338 (709)
++..+.. .++|+.|++++|.+....+ ..+..+++|++|++++|.... .++..+..+++|+.|+++
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 3333333 2355555555555443222 223445556666665554211 122233444555555555
Q ss_pred ccccc
Q 005207 339 ETAVR 343 (709)
Q Consensus 339 ~n~i~ 343 (709)
+|.+.
T Consensus 293 ~N~l~ 297 (362)
T 3goz_A 293 GKEIH 297 (362)
T ss_dssp SCBCC
T ss_pred CCcCC
Confidence 55544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=176.44 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=84.5
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcc
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 146 (709)
+|+.|++++|.++.+|..+ +++|++|+|++|+|+.+| ..+++|++|+|++|++.. +|.+.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N-- 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNN-- 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSS--
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCC--
Confidence 5555555555555555543 245555555555555555 234555555555554433 222322 4445555444
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 226 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~ 226 (709)
.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|... .
T Consensus 131 ----------------------------~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~ 174 (571)
T 3cvr_A 131 ----------------------------QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-F 174 (571)
T ss_dssp ----------------------------CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-C
T ss_pred ----------------------------cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-C
Confidence 3322 222 23444444444444444443 2334444444443321 2
Q ss_pred CcccccCCccCcEEeeeCCCCCCcCchhhcc-----CCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTT-----MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 227 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~-----l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
+|. +. ++|+.|++++|.+. .+|. +.. .+.|+.|+|++|.|+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 333 22 34444444444333 2222 111 11125566666666655555555555555555555555555544
Q ss_pred cc
Q 005207 302 IN 303 (709)
Q Consensus 302 ~~ 303 (709)
+.
T Consensus 250 l~ 251 (571)
T 3cvr_A 250 LS 251 (571)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-16 Score=158.28 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
+|++|++++|.++.+|....+++|++|++++|+++.++. +..+++|+.|++++|++.. .+.+..+++|++|++++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCC
Confidence 455555555555554432344455555555555544433 4444444444444444322 222334444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=147.84 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=70.7
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
+|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 444444444444433333444555555555555555544432 3555555555555555544444445566666666666
Q ss_pred CcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEEccCCC
Q 005207 315 GCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
+|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 6665555555566667777777777776665543 3345555555555553
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=156.83 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=89.0
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
+++|+.|++++|.+... + .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~---------------------- 99 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE---------------------- 99 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS----------------------
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC----------------------
Confidence 34455555555544332 2 24445555555555555554444 44455555555554
Q ss_pred eCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccC
Q 005207 243 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 322 (709)
Q Consensus 243 s~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 322 (709)
|.+.. . ..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 100 --n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 --NKVKD-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp --SCCCC-G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred --CcCCC-C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 44332 1 12444555555555555555442 344555555555555554432 34555666666666666554433
Q ss_pred CccccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 323 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+ +..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred h--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 3 5566666666666666666653 5666777777777665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-16 Score=173.53 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=97.2
Q ss_pred cceEEecCccccCc--ccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 47 LGLLKINNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 47 L~~L~l~~~~l~~~--~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+..+.+..+.+.+. ...+ .+|+.|++++|.+..+|....+++|+.|+|++|+|+.++. +..+++|+.|+|++|++.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HHHHhccCCCcccccchhcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 44444555554432 2233 4788888888888887754477888888888888877765 777888888888887654
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
. ++.+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..++
T Consensus 101 ~-l~~l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 101 D-LSSLKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp C-CTTSTTCTTCCEEECTTSC-CCCCG-------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred C-ChhhccCCCCCEEEecCCC-CCCCc-------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 3 4567777777777777762 33321 233355566666666555443 34455555555555555555443
Q ss_pred cccccCCCCcEEecCCC
Q 005207 205 LSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~ 221 (709)
. +..+++|+.|+|++|
T Consensus 170 ~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp G-GTTCTTCCEEECCSS
T ss_pred h-hccCCCCCEEECcCC
Confidence 3 444444444444444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=143.77 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
+|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555544444555566666666666665555443 3445555555555544332222234445555555555
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 322 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 322 (709)
+|.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|... +.+++|+.|+++.|...+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 5554444444445555555555555555544432 344455555555544322 22334444444444444444
Q ss_pred Ccccc
Q 005207 323 PDTLG 327 (709)
Q Consensus 323 ~~~l~ 327 (709)
|..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44433
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-15 Score=143.70 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=99.6
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
+.++++++.++++|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777777887776553 678888888887776666677778888888888887777777777778888888888887
Q ss_pred cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC
Q 005207 342 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421 (709)
Q Consensus 342 i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 421 (709)
++.+|... +.++++|+.|+|++|++. +..+..+.
T Consensus 92 l~~l~~~~---------------------------------------------f~~l~~L~~L~L~~N~l~-~~~~~~~~ 125 (220)
T 2v9t_B 92 ITELPKSL---------------------------------------------FEGLFSLQLLLLNANKIN-CLRVDAFQ 125 (220)
T ss_dssp CCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCccCHhH---------------------------------------------ccCCCCCCEEECCCCCCC-EeCHHHcC
Confidence 77666543 334445555555555553 33445566
Q ss_pred CCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 422 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 422 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
.+++|+.|+|++|+++.++. .+..+++|+.|+|++|+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 66666666666666665554 35556666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-18 Score=189.62 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=137.3
Q ss_pred cCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 185 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
..+++|+.|++++|.++.+|..++.+++|+.|++++|..+..+|..+ ..+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 56788999999999999999999999999999987654222222100 0112233445555666666666
Q ss_pred e-ccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 265 N-LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 265 ~-L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+ ++.+.+.. |..+.+.+|.+.. ++. ..|+.|++++|.+.+ +|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~~----------L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLDD----------LRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHHH----------HHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccch----------hhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 5 44443322 2222222222111 111 135666666654443 454 666777777777777777
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCC-CCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGN 422 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~ 422 (709)
.+|..+..+++|+.|+|++|.... +|.++.+++|+.|+|++|++. +.. |..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~------------------------lp~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN------------------------VDGVANLPRLQELLLCNNRLQ-QSAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC------------------------CGGGTTCSSCCEEECCSSCCC-SSSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC------------------------CcccCCCCCCcEEECCCCCCC-CCCCcHHHhc
Confidence 777777777777777777776321 234677788888888888885 333 888889
Q ss_pred CCCCCEEEcCCCCCcccChhh----hcCCCcCeecc
Q 005207 423 LHSLNELYLSKNNFVTLPASI----NSLLNLKELEM 454 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L 454 (709)
+++|+.|+|++|+++.+|+.+ ..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999998776543 34788887753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=167.44 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=127.9
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 147 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l 147 (709)
+..+.+..+.+..+...-.+.+|+.|++++|.|..++ ++..+++|+.|+|++|++....+ +..+++|+.|+|++| .+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KI 99 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CC
Confidence 3334445555555544446777777777777777765 56777777777777777655444 777777777777776 34
Q ss_pred cccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcC
Q 005207 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 227 (709)
Q Consensus 148 ~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l 227 (709)
..++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|......
T Consensus 100 ~~l~-------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 100 KDLS-------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CCCT-------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCh-------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 4332 344467777777777776652 4467777777777777777776 56777777777777776544433
Q ss_pred cccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC
Q 005207 228 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 228 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
| +..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+...|
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 3 67777777777777766553 34667777777777777776554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=143.96 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=101.6
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.+++++++++.+|..+. .+|+.|++++|......+..+..+++|++|++++|.+....|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666667777766553 567777777765444444456777777777777777776667777777777777777777
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.+|.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776654 466777777777777766666666666777777777776666655555666666666666666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=143.90 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=80.3
Q ss_pred cCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 185 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
+.+++|+.|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+....+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~------------ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKI------------ 105 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGS------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccC------------
Confidence 34455566666666555555 4555555555555554 222222 24444455555554444433333
Q ss_pred eccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 265 NLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 265 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|.++.
T Consensus 106 -----------~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 106 -----------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp -----------CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred -----------hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 344445555555555555444444455555555555555555334443 45556666666666666665
Q ss_pred CCcccccccCCcEEEccCCC
Q 005207 345 PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 345 l~~~~~~l~~L~~L~L~~~~ 364 (709)
++ .+..+++|++|++++|+
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC-
T ss_pred hH-HhccCCCCCEEEeeCcc
Confidence 55 55566666666666665
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=141.43 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=114.0
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEE
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 311 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 311 (709)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55777888888887766 344 5777888888888888776664 67889999999999999888888899999999999
Q ss_pred EeeCcCCCccCCccccCCCccceeeccccc-cccCCcccccccCCcEEEccCCCCCCC
Q 005207 312 NLSGCCKLENVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPS 368 (709)
Q Consensus 312 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~l~~~~~~l~~L~~L~L~~~~~~~~ 368 (709)
++++|.+.+..+..++.+++|++|++++|. +..++ .+..+++|++|++++|.....
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 999999988888889999999999999998 88887 688999999999999986543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=141.55 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++.+++.+..+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4566777777777776443 66777777777766666666666666666666666654444444555666666666666
Q ss_pred ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
.++.++... +..+++|+.|+|++|++. .+|..+
T Consensus 99 ~l~~l~~~~---------------------------------------------~~~l~~L~~L~Ls~N~l~--~lp~~~ 131 (229)
T 3e6j_A 99 QLTVLPSAV---------------------------------------------FDRLVHLKELFMCCNKLT--ELPRGI 131 (229)
T ss_dssp CCCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC--SCCTTG
T ss_pred cCCccChhH---------------------------------------------hCcchhhCeEeccCCccc--ccCccc
Confidence 655544322 345566666666666663 466666
Q ss_pred CCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 667777777777777776664 35667777777777664
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=139.66 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=61.8
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
+.++++++.++.+|..+ .+.++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46677777777776644 3445677777776655533 34566777777777777666655556667777777777777
Q ss_pred ccccCCcc-cccccCCcEEEccCCC
Q 005207 341 AVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 341 ~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
.++.++.. +..+++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc
Confidence 76665543 3334444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-17 Score=183.33 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=101.5
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCC-------------CCCCCC-CCCCCCCccEEe-ccCCcccccc
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE-------------NLIKTP-DFTEAPNLEELY-LEGCTKLRKV 150 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~-------------~~~~~~-~~~~l~~L~~L~-L~~~~~l~~~ 150 (709)
..++|+.|+|++|+++.+|..++.+++|+.|++++|. .....| .++.+++|+.|+ ++.+ .+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchh
Confidence 5788999999999999999999999999999997764 111122 345566666666 3332 22211
Q ss_pred Cccccccccccc--CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCc
Q 005207 151 HPSLLLHNKLIF--VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228 (709)
Q Consensus 151 ~~~i~~l~~L~~--l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp 228 (709)
+.....-..+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|... .+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc
Confidence 110000000000 0235555665555444 343 55555555555555555555555555555555555554332 244
Q ss_pred ccccCCccCcEEeeeCCCCCCcC-chhhccCCCCCeeeccCccCcccC
Q 005207 229 VAISSFQCLRNLKLSGCSKLKKF-PQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 229 ~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
.++++++|++|+|++|.+.+.. |..+..+++|+.|+|++|.++.+|
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3555555555555555554443 455555555555555555555443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-15 Score=151.16 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=50.2
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
.+++|++|++++|+|+.++ ++..+++|+.|+|++|++....+ +..+++|++|++++| .+..++.. .. ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-------~~-~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-------PS-AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-------CC-SS
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-------cc-Cc
Confidence 3444444444444444443 34444444444444444333222 444444444444443 22222210 00 23
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
|++|++++|.+.+. +.+..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC
Confidence 34444444433321 12444444555555555444443 3444444444444443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=140.16 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=51.3
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+.++++|++|++++|.+....+..+.++++|++|+|++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 33444444444444444443333444444444444444444444332 44444444444444444444444444444444
Q ss_pred EEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4444444444444444444444444444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=139.79 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=74.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++.+++.+..+|..+. ++|+.|++++|......|..+.++++|++|++++|.+....+..+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555554432 455555555554444444445555555555555555544333444555555555555555
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5544432 344555555555555433 34444444555555555554444333334444455555555555444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=152.44 Aligned_cols=173 Identities=16% Similarity=0.100 Sum_probs=123.6
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc-CCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
+.++++++.++.+|..+. ..++.|+|++|......+..+. ++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 3466677777654444444454 6778888888887777766677778888888888888
Q ss_pred cCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccc---cCCCccceeeccccccccC
Q 005207 270 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETAVRRP 345 (709)
Q Consensus 270 ~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~L~~n~i~~l 345 (709)
.+..++. .+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8887665 47778888888888888777777778888888888888887665433334 5688899999999999887
Q ss_pred Cc-ccccccC--CcEEEccCCCC
Q 005207 346 PS-SVFLMKN--LRTLSFSGCNG 365 (709)
Q Consensus 346 ~~-~~~~l~~--L~~L~L~~~~~ 365 (709)
|. .+..++. |+.|++++|..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 74 4555665 47899998873
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=148.04 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 187 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+.++..++++++.++.++ .+..+++|+.|++++|. +..++ .+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 344555566666666555 45666666666666653 33445 36666677777776666554433 666677777777
Q ss_pred cCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC
Q 005207 267 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 346 (709)
Q Consensus 267 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~ 346 (709)
++|.++.++.... ++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+..+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 7777776655333 6777777777765542 2466777777777777765543 2 566777777777777777766
Q ss_pred cccccccCCcEEEccCCC
Q 005207 347 SSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~ 364 (709)
..+..+++|+.|++++|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 556677777888877776
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=152.01 Aligned_cols=178 Identities=20% Similarity=0.112 Sum_probs=92.0
Q ss_pred cEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcccc-CCCccceeeccCCCccccCc-ccccCCCCc
Q 005207 137 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG-SMECLQELLLDGTDIKELPL-SIEHLFGLV 214 (709)
Q Consensus 137 ~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~ 214 (709)
+.++++++ .+..+|..+. +.++.|+|++|.+.+..+..+. .+++|+.|++++|.++.++. .+..+++|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCC-CcCccCccCC--------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 35555553 4445554322 2355566666655555555554 56666666666666665543 355555555
Q ss_pred EEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 215 QLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 215 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.|+|++|......+..|.++++|++|+|++|.+....+..+..+++|+.|+|++|.++.+|..+..
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------------- 157 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK-------------- 157 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc--------------
Confidence 555555543333333355555555555555555555555555555555555555555555443200
Q ss_pred CccccccccCCCCCCEEEeeCcCCCccCCccccCCCc--cceeeccccccc
Q 005207 295 FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES--LEELDISETAVR 343 (709)
Q Consensus 295 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~L~~n~i~ 343 (709)
.+..+++|+.|+|++|.+....+..+..++. ++.|++++|.+.
T Consensus 158 ------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 ------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0033555555555555544333334445554 366777777665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=167.69 Aligned_cols=142 Identities=18% Similarity=0.104 Sum_probs=81.4
Q ss_pred CccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC
Q 005207 181 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260 (709)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 260 (709)
+..+..++.|+.|+|++|.+..+|..+..+++|+.|+|++|... .+|..++++++|++|+|++|.+. .+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 44455555566666666666666655556666666666665433 55555666666666666666655 44666666666
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCcCCCccCCc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~~~~ 324 (709)
|++|+|++|.++.+|..++.+++|+.|+|++|.+.+.+|..+..+. .+..+++++|...+.+|.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666666666666666666666666666666666555543321 112245556655555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-14 Score=162.96 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCceEEEcccCCccccccccccccCCcEE-----EcCCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccccccc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVM-----KLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L-----~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
++++.|+|.+|.+...+..+.....|+.+ +++.|.+......+..+++|+.|+|++| .+..+|..++.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~------ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFK------ 245 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGG------
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcC------
Confidence 34455555555555444333222222222 2223333322334667777777777776 34566665553
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++.+++|+.|+|++|. +..+|..|+++++|++|+|
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 566777777777766 67777778888888888888888888888888888888888765 4577777888888888888
Q ss_pred eCCCCCCcCchhhccCCC-CCeeeccCccCcc-cCcccCCCCCCCEEeccCC
Q 005207 243 SGCSKLKKFPQIVTTMED-LSELNLDGTSITE-VPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 243 s~~~~~~~~~~~~~~l~~-L~~L~L~~~~i~~-l~~~~~~l~~L~~L~L~~~ 292 (709)
++|.+.+..|..+..+.. +..++|.+|.+.. +| ..|+.|+++.|
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 888877777766654321 2235677776652 22 34555556554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=124.80 Aligned_cols=105 Identities=21% Similarity=0.368 Sum_probs=56.0
Q ss_pred CccceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeee
Q 005207 188 ECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265 (709)
Q Consensus 188 ~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ 265 (709)
++|+.|++++|.+. .+|..+..+++|+.|++++|... .+ ..+..+++|++|++++|.+....|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44455555555554 45544455555555555554422 22 3355566666666666665555555555566666666
Q ss_pred ccCccCcccC--cccCCCCCCCEEeccCCCC
Q 005207 266 LDGTSITEVP--SSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 266 L~~~~i~~l~--~~~~~l~~L~~L~L~~~~~ 294 (709)
+++|.++.++ ..+..+++|+.|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 6666665544 3444455555555554443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=124.83 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=83.2
Q ss_pred CCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 164 ESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45556666666554 45555566666666666666666665 55666666666777666655545555555677777777
Q ss_pred eCCCCCCcC-chhhccCCCCCeeeccCccCcccCc----ccCCCCCCCEEeccCCCC
Q 005207 243 SGCSKLKKF-PQIVTTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLNDCKN 294 (709)
Q Consensus 243 s~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l~~----~~~~l~~L~~L~L~~~~~ 294 (709)
++|.+.... +..+..+++|++|++++|.+..++. .+..+++|+.|++++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 776655432 2566677777777777777776665 566677777777766653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=136.40 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=159.2
Q ss_pred CCCcceEEecCccccCc---ccccCcCccEEEeeCCCCC--CCCCcCCcCCceEEEcccCCccccc-ccccc--------
Q 005207 44 MTNLGLLKINNVQLLEG---LEYLSNKLRLLDWHRYPLK--SLPSNLQLDKIVEFKMCYSRIEELW-KGIKH-------- 109 (709)
Q Consensus 44 l~~L~~L~l~~~~l~~~---~~~l~~~L~~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~-------- 109 (709)
+.+|+.|.++++--..+ +.....+|+.|++++|.+. ..+... .+.++.+.+..+. +| ..|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMANF---VPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTTE---ECTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-ccccccccccccc---cCHHHhcccccccccc
Confidence 34566677765321111 1221246777777776666 222211 1113444444442 33 23445
Q ss_pred ccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCC
Q 005207 110 LNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 188 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~ 188 (709)
+++|+.|+|.+ .+....+ .|.+|++|+.|++.+| .+..+++ ..|..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~-----------------------------~aF~~~~ 148 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLP-----------------------------EALADSV 148 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECT-----------------------------TSSCTTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccch-----------------------------hhhcCCC
Confidence 66666666666 3333322 3666666666666664 2333333 3333333
Q ss_pred ccceeeccCCCc----ccc-CcccccCCCCc-EEecCCCCCCCcC-cccccCCccCcEEeeeCCCCCCcCchhhccCCCC
Q 005207 189 CLQELLLDGTDI----KEL-PLSIEHLFGLV-QLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL 261 (709)
Q Consensus 189 ~L~~L~l~~~~i----~~l-p~~l~~l~~L~-~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 261 (709)
++..+....... ..+ ...+..+..|+ .+.+.....+... ...-....+++.+.+.+.-...........+++|
T Consensus 149 ~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 333333332111 111 11233444444 3444332221110 0011235667777777643222222223347899
Q ss_pred CeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCC-EEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 262 SELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLK-TLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
+.++|++|.++.++. .|..+++|+.|++.++ +...-+..|.++++|+ .+++.+ .....-+..|.++++|+.|++++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 999999999998886 4889999999999887 4455556788999999 999988 45455567889999999999999
Q ss_pred cccccCCc-ccccccCCcEEEc
Q 005207 340 TAVRRPPS-SVFLMKNLRTLSF 360 (709)
Q Consensus 340 n~i~~l~~-~~~~l~~L~~L~L 360 (709)
|.++.++. .+..+++|+.+..
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEEC
T ss_pred CccCccchhhhcCCcchhhhcc
Confidence 99998876 4556889988763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-13 Score=138.03 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=155.3
Q ss_pred hhcC-CCCcceEEecCcccc--CcccccCcCccEEEeeCCCCCCCCCcC--C--------cCCceEEEcccCCcccccc-
Q 005207 40 AFSL-MTNLGLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--Q--------LDKIVEFKMCYSRIEELWK- 105 (709)
Q Consensus 40 ~f~~-l~~L~~L~l~~~~l~--~~~~~l~~~L~~L~l~~~~l~~lp~~~--~--------l~~L~~L~Ls~n~i~~l~~- 105 (709)
.+.. +++|+.|++++|++. .+.......++.+.+..+ .+|... . +.+|+.|+|++ +++.+++
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred HHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 3444 788999999999987 332222223455555555 566443 6 89999999999 9999985
Q ss_pred ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc---ccccCcccccccccccCCCcc-EEEccCCCCCCcC
Q 005207 106 GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK---LRKVHPSLLLHNKLIFVESLK-ILILSGCLKLRKF 180 (709)
Q Consensus 106 ~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~---l~~~~~~i~~l~~L~~l~~L~-~L~Ls~~~~~~~~ 180 (709)
.|..+++|+.|++++|.+....+ .|.++.++..+.+..... ...+... ....+..|+ .+.+..... +
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~-----~f~~~~~L~~~i~~~~~~~---l 190 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF-----AFIEGEPLETTIQVGAMGK---L 190 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS-----CEEESCCCEEEEEECTTCC---H
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc-----ccccccccceeEEecCCCc---H
Confidence 59999999999999998766554 588888888887655211 1111110 011123333 333332111 1
Q ss_pred Ccc----ccCCCccceeeccCCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhh
Q 005207 181 PHV----VGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV 255 (709)
Q Consensus 181 ~~~----l~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 255 (709)
+.. --...++..+.+.++-...-...+ ..+++|+.|++.+|.....-+.+|.++++|+.+++.++ +....+..|
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 111 112344445554443222111111 23566677777665433323334666777777777665 444445667
Q ss_pred ccCCCCC-eeeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEe
Q 005207 256 TTMEDLS-ELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 256 ~~l~~L~-~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 313 (709)
.++++|+ .+++.+ .++.++ .+|..+++|+.+++.++.+...-+..|.++++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7777777 777777 666664 45777777777777777666666667777777777753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=123.22 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=97.5
Q ss_pred CccCcEEeeeCCCCC-CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEE
Q 005207 234 FQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 312 (709)
Q Consensus 234 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 312 (709)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456777777777665 45666667777777777777777776 5677788888888888887776777777788888888
Q ss_pred eeCcCCCcc-CCccccCCCccceeeccccccccCCc----ccccccCCcEEEccC
Q 005207 313 LSGCCKLEN-VPDTLGQVESLEELDISETAVRRPPS----SVFLMKNLRTLSFSG 362 (709)
Q Consensus 313 L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~i~~l~~----~~~~l~~L~~L~L~~ 362 (709)
+++|.+.+. .+..++.+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888876653 34677888889999999998888776 567788999888763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-13 Score=121.77 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=55.4
Q ss_pred cceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 190 LQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 190 L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
|+.|++++|.+. .+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.+....|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 344444444433 333333444444444444433222 1 234445555555555555554455555555555555555
Q ss_pred CccCcccC--cccCCCCCCCEEeccCCCCCcccc---ccccCCCCCCEEEe
Q 005207 268 GTSITEVP--SSIELLPGLELLNLNDCKNFARVP---SSINGLKSLKTLNL 313 (709)
Q Consensus 268 ~~~i~~l~--~~~~~l~~L~~L~L~~~~~~~~l~---~~~~~l~~L~~L~L 313 (709)
+|.++.++ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555433 344445555555555544333222 23444444444443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=122.56 Aligned_cols=127 Identities=25% Similarity=0.237 Sum_probs=71.3
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
+.+++++++++++|..+.. +|+.|++++|......+. .+..+++|++|++++|.+.+..|..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666654432 556666665543322222 2555666666666666665555556666666666666666
Q ss_pred cCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 270 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 270 ~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
.++.++.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66654432 555566666666665555555555555555555555555544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-12 Score=119.16 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=87.4
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc--cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS--IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
++++++++.+ +.+|..+.. +|++|++++|.++.++.. +..+++|+.|++++|......|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3445555444 233433322 666677777777666543 66777777777777666655566677777888888888
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCcc
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFAR 297 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~ 297 (709)
|.+....+..+.++++|++|+|++|.++.+ |..+..+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777777777777788888888888888755 55677888888888888876544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=119.82 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=23.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcC-CceEEEcccCCccccccccccccCCcEEEcCCCCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLD-KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 123 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~-~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~ 123 (709)
+|+.|++++|.++.+|....+. +|++|++++|+|+.+ ..+..+++|++|+|++|++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc
Confidence 4444444444444443322222 444444444444443 3334444444444444433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=119.77 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=86.3
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
+.++++|+.|++++|.+.. ++......++|++|++++|.++.+ ..+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3345556666666665543 233333333677777777777666 45667777777777777665443344467777777
Q ss_pred EEeeCcCCCccCCc--cccCCCccceeeccccccccCCcc----cccccCCcEEEccCCC
Q 005207 311 LNLSGCCKLENVPD--TLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 311 L~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~i~~l~~~----~~~l~~L~~L~L~~~~ 364 (709)
|++++|.+ +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777765 34444 667778888888888888877764 6778888888888776
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=117.02 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=49.9
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccC
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI 271 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i 271 (709)
.++++++.++++|..+. .+|+.|++++|.. ..+|..+.++++|++|++++|.+....+..+.++++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444443322 2444444444322 23333344444444444444444443334444444444444444444
Q ss_pred cccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 272 TEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 272 ~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
+.++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 43332 2334444444444444333222223333444444444433
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=113.58 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++++++++..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 356667777777666433 356666666666655444444555566666666655544433333444455555555554
Q ss_pred ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
.++.++... +..+++|+.|++++|++. +..+..+
T Consensus 87 ~l~~~~~~~---------------------------------------------~~~l~~L~~L~l~~N~l~-~~~~~~~ 120 (177)
T 2o6r_A 87 KLQSLPNGV---------------------------------------------FDKLTQLKELALDTNQLK-SVPDGIF 120 (177)
T ss_dssp CCCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCS-CCCTTTT
T ss_pred CccccCHHH---------------------------------------------hhCCcccCEEECcCCcce-EeCHHHh
Confidence 444333211 345556666666666664 2333345
Q ss_pred CCCCCCCEEEcCCCCCcc
Q 005207 421 GNLHSLNELYLSKNNFVT 438 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~ 438 (709)
..+++|+.|++++|++..
T Consensus 121 ~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred cCCcccCEEEecCCCeec
Confidence 667777777777776663
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=114.85 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=98.6
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+..+++|+.|++++|......+..|.++++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4555555433 234333 2467888888888888888888888888888888776666666788899999999999988
Q ss_pred CCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCC
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNF 295 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~ 295 (709)
....+..+..+++|++|+|++|.++.++. .+..+++|+.|++++|+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88888888999999999999999998887 4788999999999998754
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=114.01 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=60.0
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.+++++++++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455555555555554332 455555555544332222334455555555555555444444444555555555555555
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~ 318 (709)
++.++.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5544432 34445555555555444332222334444444444444433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-10 Score=121.28 Aligned_cols=235 Identities=11% Similarity=0.101 Sum_probs=111.7
Q ss_pred cCccEEEeeCCCCCCCCCc-CCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCC-CCCCCCCCCccEEecc
Q 005207 66 NKLRLLDWHRYPLKSLPSN-LQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLE 142 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~ 142 (709)
..++.+.+.. .++.++.. |.-.+|+.+.+..+ ++.++. .|.+ .+|+.+.+..+ +... ...|.+|++|+.+++.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-CCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-ccEehHHHhhCcccCCeeecC
Confidence 3444444432 24444432 22235666666654 665553 3444 35777766652 2222 2346677777777776
Q ss_pred CCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCC
Q 005207 143 GCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 143 ~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~ 222 (709)
+| .+..++...+. ..+|+.+.+..+ +...-...|.++++|+.+.+..+ ++.++.....-.+|+.+.+..
T Consensus 189 ~n-~l~~I~~~aF~------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-- 257 (401)
T 4fdw_A 189 KT-KITKLPASTFV------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-- 257 (401)
T ss_dssp TS-CCSEECTTTTT------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--
T ss_pred CC-cceEechhhEe------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--
Confidence 64 45555554443 235566666533 33333345666666666666542 444443322225566665532
Q ss_pred CCCcC-cccccCCccCcEEeeeCCCCC-----CcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCC
Q 005207 223 NLSSL-PVAISSFQCLRNLKLSGCSKL-----KKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNF 295 (709)
Q Consensus 223 ~l~~l-p~~l~~l~~L~~L~Ls~~~~~-----~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~ 295 (709)
.+..+ ..+|.++++|+.+.+.++... ...+..|.++++|+.+.|.. .+..++. +|..+++|+.+.+.++ ..
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 12222 234555556666665554332 22234444555555555542 2443332 2444445555544332 22
Q ss_pred ccccccccCCCCCCEEEeeCcCC
Q 005207 296 ARVPSSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 296 ~~l~~~~~~l~~L~~L~L~~~~~ 318 (709)
..-...|.++ +|+.+++.++..
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSC
T ss_pred EEcHHhCCCC-CCCEEEEcCCCC
Confidence 2222334444 444444444433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-10 Score=119.21 Aligned_cols=242 Identities=9% Similarity=0.098 Sum_probs=121.9
Q ss_pred eeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCccccccccccc
Q 005207 35 HLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWKGIKHL 110 (709)
Q Consensus 35 ~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~~~~~~l 110 (709)
.|...+|.+. +|+.+.+.++- +....+.- .+|+.+.+.. .++.++.. | .+.+|+.+++++|+++.++.+.-..
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred EehHhhcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 4555566653 56666654431 11111111 2456555554 45555532 2 5566666666666666655432224
Q ss_pred cCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 111 NMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 111 ~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
.+|+.+.|..+ +... ...|.++++|+.+++..+ +..++... |.+ .+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~a-----------------------------F~~-~~ 249 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEA-----------------------------FRE-SG 249 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTT-----------------------------TTT-CC
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccc-----------------------------ccc-CC
Confidence 56666666543 1111 224556666666665542 33333322 222 34
Q ss_pred cceeeccCCCccccC-cccccCCCCcEEecCCCCCC-----CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNL-----SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 190 L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
|+.+.+ .+.++.++ ..+.++.+|+.+++.++... ..-+.+|.++++|+.+.+.. .+.......|.++.+|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 444444 22333332 23444555555555443221 11223456666666666663 344444456666677777
Q ss_pred eeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCc
Q 005207 264 LNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGC 316 (709)
Q Consensus 264 L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~ 316 (709)
+.|..+ ++.+. .+|..+ +|+.+.+.+|......+..+.+++ +++.|.+..+
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 777443 55443 346666 777777777665554455566664 6777777653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-13 Score=132.41 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=82.8
Q ss_pred CCccEEEccCCCCCCcCCc------cccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccC
Q 005207 164 ESLKILILSGCLKLRKFPH------VVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 237 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~------~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 237 (709)
..++.++++.+.+.+..|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.. ..+|..+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L 95 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTL 95 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcC
Confidence 3344444444444444333 6777777777777777777777 777777777777777653 3566555556777
Q ss_pred cEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc--ccCCCCCCCEEeccCCCCCcccc
Q 005207 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVP 299 (709)
Q Consensus 238 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~L~~~~~~~~l~ 299 (709)
++|++++|.+.. +| .+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777776554 23 45666677777777777765543 45666666666666665544433
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-09 Score=113.84 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=44.5
Q ss_pred eEeeehhhhcCCCCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccc-ccccc
Q 005207 33 EVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELW-KGIKH 109 (709)
Q Consensus 33 ~~~l~~~~f~~l~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~-~~~~~ 109 (709)
...|...||.++.+|+.+.+..+ ++.++. .| .+.+|+.+++..+ ++.++ ..|..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----------------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 115 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----------------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSG 115 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----------------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcc
Confidence 45577788888888888876432 112221 12 4566666666543 55554 34666
Q ss_pred ccCCcEEEcCCCCCCCCCCCCCCCCCcc
Q 005207 110 LNMLKVMKLSHSENLIKTPDFTEAPNLE 137 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~~~~~~~l~~L~ 137 (709)
+.+|+.+.+..+-.......|.++..++
T Consensus 116 c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 116 CYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred cccchhhcccCceeeecceeeecccccc
Confidence 6666666555442222223455554433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-12 Score=126.23 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=54.5
Q ss_pred ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCC
Q 005207 202 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281 (709)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l 281 (709)
.+|..+..+++|+.|++++|.. ..+| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+| .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3444555666666666655432 2244 4555555555555555443 33444444455555555555555444 34444
Q ss_pred CCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCC
Q 005207 282 PGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~ 318 (709)
++|+.|++++|.+....+ ..+..+++|++|++++|..
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 455555555544332111 2334444444444444433
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-09 Score=111.28 Aligned_cols=318 Identities=12% Similarity=0.076 Sum_probs=156.9
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-CCcCCce
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-LQLDKIV 91 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~ 91 (709)
+...++.|.+..+ ...|...||+++++|+.+++.++- +......-..+|+.+.+..+ ++.+... |.-..+.
T Consensus 69 ~c~~L~~i~lp~~-----i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPST-----VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCTT-----CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCCC-----ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 5567888877543 457888999999999999996541 22222222235554444322 3333322 2111222
Q ss_pred EEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEE
Q 005207 92 EFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILI 170 (709)
Q Consensus 92 ~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ 170 (709)
...+.. .+..+. ..|..+++|+.+.+..+........|.++.+|+.+.+..+ +..++...+ ..+..|+.+.
T Consensus 143 ~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F-----~~~~~L~~i~ 214 (394)
T 4fs7_A 143 EITIPE-GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCF-----AECILLENME 214 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTT-----TTCTTCCBCC
T ss_pred ccccCc-cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhh-----ccccccceee
Confidence 222222 222333 4577777788887766533222345777777777777553 333333211 1133344444
Q ss_pred ccCCCCCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCC
Q 005207 171 LSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249 (709)
Q Consensus 171 Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~ 249 (709)
+..+.. .+.+.......|+.+.+.... ..+ ...+..+..|+.+.+..+ ....-...+..+..++.+......
T Consensus 215 ~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~--- 287 (394)
T 4fs7_A 215 FPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI--- 287 (394)
T ss_dssp CCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---
T ss_pred cCCCce--EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---
Confidence 333211 111222233455555554322 222 223445556666665542 122222335555666665554322
Q ss_pred cCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 250 KFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 250 ~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
.....+..+.+|+.+.+..+ +..++. +|..+++|+.+.+.++ ....-...|.++.+|+.+.+..+ ....-..++.+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 11234455666666666543 444432 3566666666666532 22223345666666666666543 22223345666
Q ss_pred CCccceeeccccccccCCcccccccCCcE
Q 005207 329 VESLEELDISETAVRRPPSSVFLMKNLRT 357 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 357 (709)
+++|+.+++..+ +..+...+..+++|+.
T Consensus 365 C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 365 CINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 666666666543 3333334444555544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=102.46 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++++++.++++|..+ .++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345666666666666544 366666666666666665666666667777777766665555555666777777777777
Q ss_pred ccccCCcc-cccccCCcEEEccCCCC
Q 005207 341 AVRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 341 ~i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
.++.++.. +..+++|++|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 77766654 55667777777777663
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=102.53 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=67.0
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
+.++++++.+.++|..+. ++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 666677777666666666666667777777777766555444455667777777777777
Q ss_pred cccCCcc-cccccCCcEEEccCCCC
Q 005207 342 VRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 342 i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
++.+|.. +..+++|++|++++|..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 7766654 55677777777777763
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=102.10 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=47.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++++++.++.+|..+. .+|+.|++++|......|..+.++++|++|+|++|.+....+..+..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 455666666665554442 445555555544333334444445555555555554444333444444444444444444
Q ss_pred CcccCcc-cCCCCCCCEEeccCCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCK 293 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~ 293 (709)
++.++.. +..+++|+.|++++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4444432 3444444444444443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=102.21 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=43.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++++++.+..+|..+. .+|+.|++++|......|..+.++++|++|+|++|.+....+..+..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554432 444445544444333333344444444444444444433333333444444444444444
Q ss_pred CcccCcc-cCCCCCCCEEeccCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDC 292 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~ 292 (709)
+..+|.. +..+++|+.|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 4444332 333344444444333
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-07 Score=97.91 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=89.7
Q ss_pred eEeeehhhhcCCC-CcceEEecCc--cccCcccccCcCccEEEeeCCC---CCCCCCc-C-CcCCceEEEcccCCccccc
Q 005207 33 EVHLSAKAFSLMT-NLGLLKINNV--QLLEGLEYLSNKLRLLDWHRYP---LKSLPSN-L-QLDKIVEFKMCYSRIEELW 104 (709)
Q Consensus 33 ~~~l~~~~f~~l~-~L~~L~l~~~--~l~~~~~~l~~~L~~L~l~~~~---l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~ 104 (709)
...|...||.+.+ .|+.+.+.+. .+...-+.-..+|+.+.+..+. ++.++.. | .+.+|+.+.+..+ ++.++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 4567788999885 5898888553 1333222222578888877653 5566543 3 5677777776654 55555
Q ss_pred -cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc
Q 005207 105 -KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 183 (709)
Q Consensus 105 -~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~ 183 (709)
..+..+.+|+.+.+..+........|..+..|+.+.+.. .+..+....+.. ..|+.+.+.... ...-...
T Consensus 130 ~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~------~~l~~i~ip~~~-~~i~~~a 200 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG------TALTQIHIPAKV-TRIGTNA 200 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT------CCCSEEEECTTC-CEECTTT
T ss_pred hhhhhhhcccccccccceeeeecccceecccccccccccc--eeeEeccccccc------cceeEEEECCcc-cccccch
Confidence 446777888888886553333334577788888877765 344444433321 235555554321 1112234
Q ss_pred ccCCCccceeeccCCCc
Q 005207 184 VGSMECLQELLLDGTDI 200 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i 200 (709)
+..+..+..........
T Consensus 201 f~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 201 FSECFALSTITSDSESY 217 (394)
T ss_dssp TTTCTTCCEEEECCSSS
T ss_pred hhhccccceeccccccc
Confidence 44555555555444433
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-10 Score=122.08 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCccEEEccCCCCCCcCCcc----cc-CCCccceeeccCCCccc--cCcccccCCCCcEEecCCCC
Q 005207 164 ESLKILILSGCLKLRKFPHV----VG-SMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~----l~-~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~ 222 (709)
++|+.|++++|.+....... +. ..++|++|++++|.+.. +......+.+|+.|+|++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 45666666666554322221 22 12456666666665542 11112223345555555543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-09 Score=116.02 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred CCccceeeccCCCccc-----cCccccc-CCCCcEEecCCCCCCCcCcccc-cCCccCcEEeeeCCCCCCcCchhh----
Q 005207 187 MECLQELLLDGTDIKE-----LPLSIEH-LFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLKKFPQIV---- 255 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~-----lp~~l~~-l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~~~~~~~~~~~~---- 255 (709)
++.|+.|++++|.++. +...+.. ..+|+.|+|++|.....-...+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777763 2222222 2567777777665432211111 224556666666665543322222
Q ss_pred -ccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC
Q 005207 256 -TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329 (709)
Q Consensus 256 -~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l 329 (709)
...++|++|+|++|.++. ++..+...++|++|++++|.+..... ..++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--------------------~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--------------------ELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--------------------HHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--------------------HHHHHHHhcC
Confidence 123455555555555542 22233444445555555544322110 0122333444
Q ss_pred Cccceeecccccccc-----CCcccccccCCcEEEccCCC
Q 005207 330 ESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 330 ~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
++|++|++++|.++. +...+...++|++|+|++|.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 555555555555542 22333445667777777665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=104.19 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeeccCc-cCcccCcccCCCCCCCEEeccC-CCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 263 ELNLDGT-SITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 263 ~L~L~~~-~i~~l~~~~~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..+.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777777 77777778888875 6666655567777888888888888777777777788888888888888
Q ss_pred ccccCCcccccccCCcEEEccCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGP 366 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~ 366 (709)
.++.+|..++....|+.|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88887776665445888888888743
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-06 Score=90.15 Aligned_cols=292 Identities=13% Similarity=0.094 Sum_probs=134.1
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-CCcCCceE
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-LQLDKIVE 92 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~ 92 (709)
.++++.|.+... ...|...||.++.+|+.+.+.++- +....+.- .+|+.+.+.. .++.++.. |...+|+.
T Consensus 45 ~~~i~~v~ip~~-----vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~-c~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNSG-----ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFAD-TKLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGCSEEEECTT-----EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTT-CCCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred ccCCEEEEeCCC-----ccChHHHHhhCCCCCCEEEeCCcceEechhhhcC-CCCceEECCc-eeeEeccceeccCCccc
Confidence 356777777554 667888889999999988885431 22222222 2455555543 24455433 23346777
Q ss_pred EEcccCCccccccc-cccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEc
Q 005207 93 FKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILIL 171 (709)
Q Consensus 93 L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~L 171 (709)
+.+..+ ++.+... +.. .+|+.+.+..+-.......|..+.+++.+.+............+.. .
T Consensus 118 i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~------------- 181 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-N------------- 181 (379)
T ss_dssp EECCTT-CCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-E-------------
T ss_pred ccCCCc-ccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceec-c-------------
Confidence 777654 3344332 333 2455555544422222334666667776666543211110000000 0
Q ss_pred cCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcC-cccccCCccCcEEeeeCCCCCCc
Q 005207 172 SGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKK 250 (709)
Q Consensus 172 s~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~ 250 (709)
........+.....+..+.+...........+..+.+|+.+.+... +..+ ..++.++..|+.+.+..+ +...
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I 254 (379)
T 4h09_A 182 ----KNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSI 254 (379)
T ss_dssp ----TTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEE
T ss_pred ----cccceeccccccccccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEe
Confidence 0000111122222333333222222222223334444444444321 1111 223444555555555442 2222
Q ss_pred CchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC
Q 005207 251 FPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329 (709)
Q Consensus 251 ~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l 329 (709)
....+.++.+|+.+.+..+ +..++. .|..+++|+.+.+.++.+...-...|.++.+|+.+.+..+ ....-..++.++
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 3344555555665555432 333332 3555666666666554444344445566666666666432 112223345566
Q ss_pred Cccceeeccc
Q 005207 330 ESLEELDISE 339 (709)
Q Consensus 330 ~~L~~L~L~~ 339 (709)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 6666666543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.69 E-value=5e-08 Score=102.44 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=59.3
Q ss_pred eeeccCC-CccccCcccccCCCCcEEecCC-CCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 192 ELLLDGT-DIKELPLSIEHLFGLVQLTLND-CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 192 ~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
.++++++ .++.+|. +..+++|+.|+|++ |......+..|.++++|+.|+|++|.+.+..|..+.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5666666 66666666666664 3333223345666667777777766666666666666666666666666
Q ss_pred cCcccCcccCCCCCCCEEeccCCCC
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.+..+|........|+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 6666655432222255555555543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=92.00 Aligned_cols=313 Identities=11% Similarity=0.102 Sum_probs=148.6
Q ss_pred ceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc------ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCC
Q 005207 18 LVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ------LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDK 89 (709)
Q Consensus 18 ~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~------l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~ 89 (709)
.++.|.+-.+ ...|...||.++++|+.+.+.++. +....+.-..+|+.+.+.. .++.++... .+.+
T Consensus 65 ~L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTT
T ss_pred cCEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcc
Confidence 4777777554 567888999999999999997653 2222222224565554433 355555433 7889
Q ss_pred ceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 90 IVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
|+.+.+..+ ++.+. ..+..+.+|+.+.+..+-.......|.. .+|+.+.+... +..+.... ...+..++.
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~-~~l~~i~ip~~--~~~i~~~a-----f~~c~~l~~ 209 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTG-TALTQIHIPAK--VTRIGTNA-----FSECFALST 209 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT-CCCSEEEECTT--CCEECTTT-----TTTCTTCCE
T ss_pred cccccccce-eeeecccceecccccccccccceeeEeccccccc-cceeEEEECCc--ccccccch-----hhhccccce
Confidence 999999754 55555 4588899999999987632222234544 57888887652 22222211 122344555
Q ss_pred EEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc-CcccccCCccCcEEeeeCCCC
Q 005207 169 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 169 L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
...........-...+..........+.. .....+..+.+.. .+.. -..+|.++.+|+.+.+... .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~-~ 276 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRY----------PSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDS-V 276 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEEC----------CTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTT-C
T ss_pred ecccccccccccceeeccccccccccccc----------ccccccceEEcCC--cceEcccceeeecccccEEecccc-c
Confidence 55443322111000011000000000000 0001111111110 0000 0122444555555554332 1
Q ss_pred CCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccc
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 326 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 326 (709)
.......+.++++|+.+.+. +.+..++. .|..+.+|+.+.+.++ ....-...|.+|.+|+.+.+..+ ....-...|
T Consensus 277 ~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 277 VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 22223344555555555554 23444432 3555666666666542 22222344566666666666432 222223456
Q ss_pred cCCCccceeeccccccccCCcccccccCCcEEEccCC
Q 005207 327 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 327 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
.++.+|+.+++.++.... ..+....+|+.+.+..+
T Consensus 354 ~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred hCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 666666666666654321 23344566666665543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-08 Score=102.99 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=29.8
Q ss_pred CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhc--cCCCCCeeecc
Q 005207 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT--TMEDLSELNLD 267 (709)
Q Consensus 204 p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~l~~L~~L~L~ 267 (709)
...+..+++|+.|++++|... .++. +. +++|++|++..|.+.......+. .+++|+.|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334455566666666554222 2222 22 56666666665554433222222 45666666553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-05 Score=84.94 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=30.8
Q ss_pred ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecc
Q 005207 277 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338 (709)
Q Consensus 277 ~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 338 (709)
.+....+|+.+.+..+ ........+.++.+|+.+.+..+ ....-...+..+.+|+.+.+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 3455556666665432 22222334556666776666543 222223445566667766654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.4e-08 Score=101.14 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=103.4
Q ss_pred ccccCCCCcEEecCCCCC---------CCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-C
Q 005207 206 SIEHLFGLVQLTLNDCKN---------LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-P 275 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~---------l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~ 275 (709)
++..+++|+.|.+.+... ...+...+..+++|+.|.+++|.... ++. + .+++|+.|+|..+.+..- .
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344555666666644211 12344556778999999999984332 232 3 378999999998887621 1
Q ss_pred ccc--CCCCCCCEEeccCC--CC-----Cccccccc--cCCCCCCEEEeeCcCCCccCCccc---cCCCccceeeccccc
Q 005207 276 SSI--ELLPGLELLNLNDC--KN-----FARVPSSI--NGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETA 341 (709)
Q Consensus 276 ~~~--~~l~~L~~L~L~~~--~~-----~~~l~~~~--~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~L~~n~ 341 (709)
..+ ..+|+|+.|+|+.+ .. ...+...+ ..+++|++|++.+|......+..+ ..+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 122 36899999998632 11 11111222 358999999999988764332222 357899999999999
Q ss_pred ccc-----CCcccccccCCcEEEccCCC
Q 005207 342 VRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 342 i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
+.. ++..+..+++|+.|++++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 874 45555678999999999987
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.7e-06 Score=78.67 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=17.2
Q ss_pred ccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCC
Q 005207 184 VGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~ 222 (709)
+...++|++|++++|.+. .+...+...+.|++|+|++|.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 334444555555555443 123333334444444444443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=5.6e-06 Score=78.12 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred ccCCccCcEEeeeCC-CCCCc----CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCccccc
Q 005207 231 ISSFQCLRNLKLSGC-SKLKK----FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.. +...+...+.|++|+|++|.+...-.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~- 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI- 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH-
Confidence 445566666666666 44322 22333444555556655555542 22223333445555555444332100
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccCCCccceeec--ccccccc-----CCcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI--SETAVRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L--~~n~i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
..+...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 111 -------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 -------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 012233444455555555 4555541 23333445666666666665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.70 E-value=2.1e-05 Score=72.58 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCcc-CCccccCC----Cccceeeccccc-ccc-CCcccccccC
Q 005207 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN-VPDTLGQV----ESLEELDISETA-VRR-PPSSVFLMKN 354 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~~~l~~l----~~L~~L~L~~n~-i~~-l~~~~~~l~~ 354 (709)
.+|+.|++++|.+...--..+.++++|++|+|++|..++. --..+..+ ++|++|++++|. |+. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3567777777665544444456677777777777764432 22223332 467778887764 552 2234556888
Q ss_pred CcEEEccCCCCCCC
Q 005207 355 LRTLSFSGCNGPPS 368 (709)
Q Consensus 355 L~~L~L~~~~~~~~ 368 (709)
|++|++++|...+.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999885544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.67 E-value=2.8e-05 Score=71.76 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=42.0
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc-Cccc-CcccCC----CCCCCEEeccCCCCC-ccccccccCCCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS-ITEV-PSSIEL----LPGLELLNLNDCKNF-ARVPSSINGLKSL 308 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l-~~~~~~----l~~L~~L~L~~~~~~-~~l~~~~~~l~~L 308 (709)
.|+.|++++|.+....-..+.++++|++|+|++|. |++- -..+.. .++|++|+|++|..+ ..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443333334445555555555542 3310 011222 235666666666532 2222334556777
Q ss_pred CEEEeeCcCCCcc
Q 005207 309 KTLNLSGCCKLEN 321 (709)
Q Consensus 309 ~~L~L~~~~~~~~ 321 (709)
++|++++|+.++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 7777777765543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.6e-06 Score=81.43 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=31.5
Q ss_pred ccCCCCCeeeccCccCcccC---cccCCCCCCCEEeccCCCCCccccccccCCC--CCCEEEeeCcCCCc
Q 005207 256 TTMEDLSELNLDGTSITEVP---SSIELLPGLELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLE 320 (709)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~L~~~~~~~ 320 (709)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|.+.+. ..+..++ +|++|++++|+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 44566666666666666433 3344555666666665554432 1122222 45555555554443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=73.08 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCccCcEEeeeCCCCCC--cCchhhccCCCCCeeeccCccCcccCcccCCCC--CCCEEeccCCCCCccccc-------c
Q 005207 233 SFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLP--GLELLNLNDCKNFARVPS-------S 301 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~--~L~~L~L~~~~~~~~l~~-------~ 301 (709)
++++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+..+. .+..+. +|+.|++++|++.+..|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34556666666665554 33455566777777777777776552 222233 788888888877665442 2
Q ss_pred ccCCCCCCEEE
Q 005207 302 INGLKSLKTLN 312 (709)
Q Consensus 302 ~~~l~~L~~L~ 312 (709)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667777665
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.015 Score=50.67 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=32.0
Q ss_pred EEEeeCCCCC--CCCCcCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCC
Q 005207 70 LLDWHRYPLK--SLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSE 122 (709)
Q Consensus 70 ~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~ 122 (709)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++.+ |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555666666 666543 24566777777777766643 5666666666666664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.015 Score=50.81 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=47.2
Q ss_pred ceEEecCcccc--CcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcc
Q 005207 48 GLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIE 101 (709)
Q Consensus 48 ~~L~l~~~~l~--~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~ 101 (709)
..++.+++.+. ..+..+|.+|++|++++|.++.+|... .+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888887 666778899999999999999999876 7899999999999775
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.011 Score=55.30 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred cccCCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~ 292 (709)
++..-+.|+.|+|++|.+... +.+.+..-+.|++|+|+.|.|.. +...+..-+.|+.|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344455666666666655432 23344445667777777776662 3334555555666666654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=55.36 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=19.0
Q ss_pred cccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCC
Q 005207 183 VVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 183 ~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~ 222 (709)
.+...+.|+.|+|++|.|. .+...+..-+.|+.|+|+.|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3444445555555555554 233334444455555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 709 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-05 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 5e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.3 bits (168), Expect = 2e-13
Identities = 52/299 (17%), Positives = 99/299 (33%), Gaps = 25/299 (8%)
Query: 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 193
P+ L L+ K+ ++ + K +L LIL + P + L+ L
Sbjct: 31 PDTALLDLQNN-KITEIKDGDFKNLK-----NLHTLILINNKISKISPGAFAPLVKLERL 84
Query: 194 LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ 253
L +KELP + +++ N+ + + + L +
Sbjct: 85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 254 IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313
M+ LS + + T+IT +P L P L L+L+ K +S+ GL +L L L
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 314 SGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWH 373
S +L L EL ++ + + P + K ++ +
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN----------- 251
Query: 374 LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGNLHSLNELYL 431
N + + S + + L + I PS ++ + L
Sbjct: 252 -----NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.6 bits (135), Expect = 3e-09
Identities = 36/253 (14%), Positives = 81/253 (32%), Gaps = 13/253 (5%)
Query: 213 LVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 272
L L + K + + L L L K P + L L L +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 273 EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESL 332
E+P + ++ N+ + + + L + ++ L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 333 EELDISETAVRRPPSSVFLMKNLRTLSFSGCN--GPPSSASWHLHLPFNLMGKSSCLVAL 390
+ I++T + P + +L L G +++ L+ L + + A+
Sbjct: 153 SYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210
Query: 391 MLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-------I 443
SL+ L +L L++ L + +P + + + +YL NN + ++
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 444 NSLLNLKELEMED 456
+ + +
Sbjct: 269 TKKASYSGVSLFS 281
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 57.7 bits (138), Expect = 2e-09
Identities = 56/371 (15%), Positives = 125/371 (33%), Gaps = 30/371 (8%)
Query: 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145
LD++ + I+ + G+++LN L + S++ L L ++ +
Sbjct: 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ 99
Query: 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 205
+ L + + + + +I + L + S + DI L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-------DISALSG 152
Query: 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265
+ D K L++L ++ + +L L
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK---------VSDISVLAKLTNLESLI 203
Query: 266 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 325
I+++ + +L L+ L+L N + ++ L +L L+L+ ++ N+
Sbjct: 204 ATNNQISDITP-LGILTNLDELSL--NGNQLKDIGTLASLTNLTDLDLANN-QISNLAP- 258
Query: 326 LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385
L + L EL + + L S S +L + + ++
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 386 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 445
+ +S L L +L ++ + + S + NL ++N L N L + +
Sbjct: 319 IS---DISPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP-LAN 371
Query: 446 LLNLKELEMED 456
L + +L + D
Sbjct: 372 LTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 51.9 bits (123), Expect = 1e-07
Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 12/180 (6%)
Query: 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221
+ +L L L+G +L+ + S+ L +L L I L + L L +L L
Sbjct: 217 ILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGAN 273
Query: 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281
+ + P+ L + ++ +++L+ L L +I+++ + L
Sbjct: 274 QISNISPL----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSL 328
Query: 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341
L+ L + N SS+ L ++ L+ ++ ++ L + + +L +++ A
Sbjct: 329 TKLQRLFFAN--NKVSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 47.3 bits (111), Expect = 4e-06
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 289 LNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 348
L N + + L +L L+L+G + TL + +L +LD++ +
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 258
Query: 349 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD 408
+ + L L S L NL + L + +S L++LT L L
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYF 316
Query: 409 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458
+ + S + +L L L+ + NN V+ +S+ +L N+ L +
Sbjct: 317 NNISD---ISPVSSLTKLQRLFFA-NNKVSDVSSLANLTNINWLSAGHNQ 362
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.003
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 392 LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKE 451
S + L +T L G+ + L++L ++ S N + + +L L +
Sbjct: 37 TVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVD 92
Query: 452 LEMEDC 457
+ M +
Sbjct: 93 ILMNNN 98
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (133), Expect = 4e-09
Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 9/234 (3%)
Query: 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318
E+N D ++T +P +L +L+L++ + +++ L LNL
Sbjct: 10 ASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 319 LENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPF 378
+ D V +L ++ + +SF+ P A L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 379 NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 438
L K + L L P L + + L +L+ L L +N+ T
Sbjct: 128 ELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 439 LPASINSLLNLKELEME------DCKRLQFLPQLPPNIIFVKVNGCSSLVTLLG 486
+P L + +C+ L F L N V V V +
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMT 240
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 36/273 (13%), Positives = 96/273 (35%), Gaps = 15/273 (5%)
Query: 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK-NFA 296
+ L L+G + + + ++ + + + + ++ ++L++ +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 297 RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLR 356
+ ++ L+ L+L G + + +TL + +L L++S + + L+ +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 357 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVAL-----------MLPSLSGLRSLTKLD 405
L + H+ + + ++ + L + + +L LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 406 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLKELEMEDCKRLQFL 463
LSD + + + L+ L L LS+ + + + LK L++ L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 464 PQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGI 496
L + +++N + K+ I
Sbjct: 242 QLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 15/226 (6%)
Query: 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE--VPSSI 278
KNL Q + + + + + + ++L + I + +
Sbjct: 9 GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGIL 67
Query: 279 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT--------LGQVE 330
L+ L+L + + +++ +L LNLSGC L ++
Sbjct: 68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127
Query: 331 SLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN----GPPSSASWHLHLPFNLMGKSSC 386
D +E V+ + V LS N + +L + S
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187
Query: 387 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 432
L L L L LS C ++G + +L L +
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 35/245 (14%), Positives = 65/245 (26%), Gaps = 17/245 (6%)
Query: 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILS 172
+ + S + ++ + L +L L+ L L
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-----KLQNLSLE 79
Query: 173 GCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS------S 226
G + + L L L G L +L +
Sbjct: 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139
Query: 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI-----TEVPSSIELL 281
+ + L LSG K + + T + L S + L
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199
Query: 282 PGLELLNLNDCKNF-ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340
L+ L+L+ C + + + +LKTL + G + + L+ T
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 259
Query: 341 AVRRP 345
+ RP
Sbjct: 260 TIARP 264
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 372 WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 431
L + + + SL +L++S+ L E +P+ L L
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLE---RLIA 311
Query: 432 SKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVN 476
S N+ +P NLK+L +E L+ P +P ++ +++N
Sbjct: 312 SFNHLAEVPELPQ---NLKQLHVEYNP-LREFPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 399 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458
R +L+L++ GL +P +L SL S N+ LP SL + + D
Sbjct: 38 RQAHELELNNLGLSS--LPELPPHLESLV---ASCNSLTELPELPQSL----KSLLVDNN 88
Query: 459 RLQFLPQLPPNIIFVKVNGC 478
L+ L LPP + ++ V+
Sbjct: 89 NLKALSDLPPLLEYLGVSNN 108
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317
L ELN+ + E+P+ P LE L + + A VP ++LK L++
Sbjct: 283 PPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPEL---PQNLKQLHVEY-N 334
Query: 318 KLENVPDTLGQVESL 332
L PD VE L
Sbjct: 335 PLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.002
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340
P LE LN+++ +P+ L+ L S L VP+ +L++L +
Sbjct: 283 PPSLEELNVSNN-KLIELPALP---PRLERLIAS-FNHLAEVPELPQ---NLKQLHVEYN 334
Query: 341 AVRRPPSSVFLMKNLR 356
+R P +++LR
Sbjct: 335 PLREFPDIPESVEDLR 350
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 46/259 (17%), Positives = 89/259 (34%), Gaps = 10/259 (3%)
Query: 216 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275
L+ + +P ++++ L L + G + L I + L++L+ + T V
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 276 SSIEL----LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES 331
+I + L L+ + +P SI+ L +L + G +PD+ G
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 332 LEELDISETA--VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA 389
L + P + + +S + + + +A
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 390 LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNL 449
L + ++L LDL + + G +P + L L+ L +S NN +L
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 450 KELEMEDCKRLQFLPQLPP 468
+ K L P LP
Sbjct: 294 DVSAYANNKCLCGSP-LPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 42.8 bits (99), Expect = 8e-05
Identities = 45/243 (18%), Positives = 79/243 (32%), Gaps = 6/243 (2%)
Query: 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLKLSGCSKLKKFPQIVT 256
+P S+ +L L L + NL +P AI+ L L ++ + P ++
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 257 TMEDLSELNLDGTS-ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315
++ L L+ + +P SI LP L + + + +P S L T
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 316 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375
+L +L +D+S + S +F N
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 376 LPFNLMGKSSC--LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433
+ + L+ L+ L L++S L G IP GNL + +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQ-GGNLQRFDVSAYAN 300
Query: 434 NNF 436
N
Sbjct: 301 NKC 303
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 43/261 (16%), Positives = 78/261 (29%), Gaps = 14/261 (5%)
Query: 64 LSNKLRLLDWHRYPLKSLPSNL-----QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 118
+ + + H + +P+ L + +RI+ L +
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 119 SHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR 178
+ + F L L+L+ C L + +L+ L L
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRC------GLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 179 KFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 237
+ L L L G I +P + L L +L L+ + P A L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFAR 297
L L + + + + L L L+ + L L+ + +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263
Query: 298 VPSSING--LKSLKTLNLSGC 316
+P + G LK L +L GC
Sbjct: 264 LPQRLAGRDLKRLAANDLQGC 284
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 20/196 (10%)
Query: 268 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLG 327
T+I + E + + +P +E + TL
Sbjct: 4 ATTIKDAIRIFEERKSVVATEAEKVELHGMIP------------------PIEKMDATLS 45
Query: 328 QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL 387
+++ + L +S + + S+ M+NLR LS + S
Sbjct: 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE-ELWISYN 103
Query: 388 VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLL 447
L + L +L L +S+ + + L L +L L+ N N+
Sbjct: 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
Query: 448 NLKELEMEDCKRLQFL 463
+ ++ L+ L
Sbjct: 164 EYRIEVVKRLPNLKKL 179
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 8e-05
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 23/192 (11%)
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS--- 314
+ + NL S+T+ + EL ++ + N+ + I L ++ L L+
Sbjct: 23 FAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNK 79
Query: 315 --GCCKLENVPDTLGQVESLEELDISETAVRRPPSSVF------------LMKNLRTLSF 360
L N+ + ++ + L+ + S
Sbjct: 80 LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139
Query: 361 SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420
N + + L + L+GL L L LS + + +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRAL 196
Query: 421 GNLHSLNELYLS 432
L +L+ L L
Sbjct: 197 AGLKNLDVLELF 208
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 26/141 (18%)
Query: 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPS 368
+ L+L+ L + L Q+ + LD+S +R P ++ ++ L L S
Sbjct: 1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 369 SASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 428
+L +L L + L + A + + L
Sbjct: 59 DGVANLPRL------------------------QELLLCNNRLQQSAAIQPLVSCPRLVL 94
Query: 429 LYLSKNNFVTLPASINSLLNL 449
L L N+ L +
Sbjct: 95 LNLQGNSLCQEEGIQERLAEM 115
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.002
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 395 LSGLRSLTKLDLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNF 436
L L+ + L DCGL E I S + +L EL L N
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 11/172 (6%)
Query: 258 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317
++ ++ L D I + +E L L +N ++ + I LK+L L
Sbjct: 39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLT-----DITPLKNLTKLVDILMN 92
Query: 318 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLP 377
+ T + + + NL L S SA L
Sbjct: 93 NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 152
Query: 378 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 429
L S+ + L L+ L +L +LD+S + + S + L +L L
Sbjct: 153 QQLNFSSNQVT--DLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 12/197 (6%)
Query: 256 TTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315
T + + + L T++T+ S +L + L + + + L +L +N S
Sbjct: 15 TALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 71
Query: 316 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375
+ P ++ ++ A P +++ + L + + P +L+
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 376 LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435
S + AL + + + ++D + NL +L L +S N
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------LKPLANLTTLERLDISSNK 183
Query: 436 FVTLPASINSLLNLKEL 452
+ + L NL+ L
Sbjct: 184 VSDISV-LAKLTNLESL 199
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (88), Expect = 0.002
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 372 WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI----PSDIGNLHSLN 427
L L L+ + S L L L + A+ + L
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305
Query: 428 ELYLSKNNFVTLPASINSLLNLKELE 453
L L+ N F ++ + +
Sbjct: 306 FLELNGNRFSEEDDVVDEIREVFSTR 331
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.91 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.89 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.88 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.81 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.8 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.8 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.61 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.6 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.54 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.44 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.37 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.36 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.28 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.28 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.25 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.21 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.17 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.99 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.99 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.88 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.85 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.55 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.51 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.03 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.96 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.9 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.73 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=2.2e-24 Score=229.09 Aligned_cols=340 Identities=19% Similarity=0.244 Sum_probs=209.2
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+|++|+++++.+++++..-.+++|++|++++|+|+.++ .++++++|++|++++|++.. .+.++.+++|+.|++.++.
T Consensus 44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~-i~~l~~l~~L~~L~~~~~~ 121 (384)
T d2omza2 44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQ 121 (384)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccc-ccccccccccccccccccc
Confidence 467777777777777754336777777777777777775 37777777777777776543 3446777777777776652
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
...++... ....+.......+.+....+..................+. .+.............+. .
T Consensus 122 -~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~ 187 (384)
T d2omza2 122 -ITDIDPLK-------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK----PLANLTTLERLDISSNK--V 187 (384)
T ss_dssp -CCCCGGGT-------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG----GGTTCTTCCEEECCSSC--C
T ss_pred -cccccccc-------ccccccccccccccccccccccccccccccccccccchhh----hhccccccccccccccc--c
Confidence 22222111 1222333333332222111111111111111111111111 12222223333333322 1
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
........+++++.+++++|.+....+ ...+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+
T Consensus 188 ~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~ 262 (384)
T d2omza2 188 SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGL 262 (384)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--cccc
Confidence 222335567777777777776655433 345677888888888777764 46677888888888877654332 5667
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (709)
++|++|+++++...+.. .+..++.++.+++..|.+..++ .+..+++++.|++++|+...
T Consensus 263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~------------------ 321 (384)
T d2omza2 263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISD------------------ 321 (384)
T ss_dssp TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSC------------------
T ss_pred ccCCEeeccCcccCCCC--cccccccccccccccccccccc-ccchhcccCeEECCCCCCCC------------------
Confidence 78888888877665432 3566777888888888877654 46677888888888876321
Q ss_pred ccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccc
Q 005207 386 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 386 ~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 457 (709)
++.+..+++|++|++++|++++ ++ .+..+++|++|++++|+++.+++ +.++++|+.|+|++|
T Consensus 322 ------l~~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 322 ------ISPVSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred ------CcccccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence 2225677888888888888853 43 57888899999999998888775 788889999998876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.91 E-value=2.5e-22 Score=212.99 Aligned_cols=340 Identities=17% Similarity=0.220 Sum_probs=216.6
Q ss_pred CCCCcceEEecCcccc--CcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCC
Q 005207 43 LMTNLGLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~--~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 120 (709)
.+.+|+.|+++++.+. +++..+ ++|++|++++|+++.+|..-.+++|++|++++|+|+.++ .+..+++|+.|++++
T Consensus 42 ~l~~l~~L~l~~~~I~~l~gl~~L-~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~ 119 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN 119 (384)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred HhCCCCEEECCCCCCCCccccccC-CCCCEEeCcCCcCCCCccccCCccccccccccccccccc-ccccccccccccccc
Confidence 4578999999999876 467777 599999999999999987558999999999999999886 488999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCc
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i 200 (709)
+...... .......+..+....+. +..+...... ............ .....+.............+..
T Consensus 120 ~~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (384)
T d2omza2 120 NQITDID-PLKNLTNLNRLELSSNT-ISDISALSGL-----TSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV 187 (384)
T ss_dssp SCCCCCG-GGTTCTTCSEEEEEEEE-ECCCGGGTTC-----TTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC
T ss_pred ccccccc-ccccccccccccccccc-cccccccccc-----cccccccccccc-----chhhhhcccccccccccccccc
Confidence 8765433 33444555655555431 1111110000 000011111110 0111122222333333333322
Q ss_pred cccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
. .......+++++.+++++|..... +. ....++|+.|++++|.+... ..+..+++|+.|++++|.+..++. +..
T Consensus 188 ~-~~~~~~~l~~~~~l~l~~n~i~~~-~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 261 (384)
T d2omza2 188 S-DISVLAKLTNLESLIATNNQISDI-TP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG 261 (384)
T ss_dssp C-CCGGGGGCTTCSEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred c-cccccccccccceeeccCCccCCC-Cc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc-ccc
Confidence 2 233445566666666666543332 22 34456677777776655432 245666777777777777766553 566
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEc
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSF 360 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 360 (709)
+++|+.|+++++.+.+.. .+..++.++.+.+.+|...+ ...+..+++++.|++++|.++.+++ +..+++|++|++
T Consensus 262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L 336 (384)
T d2omza2 262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 336 (384)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred cccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEEC
Confidence 777777777776654332 25567777777777766544 2346667788888888888887653 677888888888
Q ss_pred cCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC
Q 005207 361 SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434 (709)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 434 (709)
++|+... ++.+.++++|+.|++++|+++ + ++ .+.++++|+.|+|++|
T Consensus 337 ~~n~l~~------------------------l~~l~~l~~L~~L~l~~N~l~-~-l~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 337 ANNKVSD------------------------VSSLANLTNINWLSAGHNQIS-D-LT-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp CSSCCCC------------------------CGGGGGCTTCCEEECCSSCCC-B-CG-GGTTCTTCSEEECCCE
T ss_pred CCCCCCC------------------------ChhHcCCCCCCEEECCCCcCC-C-Ch-hhccCCCCCEeeCCCC
Confidence 8886321 233667888999999888885 2 33 2788899999999887
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.89 E-value=1.3e-23 Score=216.74 Aligned_cols=252 Identities=21% Similarity=0.291 Sum_probs=167.1
Q ss_pred ccceeeccCCCcc---ccCcccccCCCCcEEecCCC-CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 189 CLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC-KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 189 ~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~-~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
+++.|+++++.+. .+|..++++++|++|+|++| ...+.+|..++++++|++|+|++|.+.+..+..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 3444455544443 35555555555555555542 3333556556666666666666666655555556666666666
Q ss_pred eccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCC-CEEEeeCcCCCccCCccccCCCccceeecccccc
Q 005207 265 NLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL-KTLNLSGCCKLENVPDTLGQVESLEELDISETAV 342 (709)
Q Consensus 265 ~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L-~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i 342 (709)
++++|.+. .+|..+..++.|+.+++++|...+.+|..+..+.++ +.+++++|...+..+..+..+..+ .+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 66666554 455566666666666666666666666666666554 666666666666666665555433 466666655
Q ss_pred c-cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC
Q 005207 343 R-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421 (709)
Q Consensus 343 ~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 421 (709)
. .+|.....+++|+.+++++|.... .+|.+..+++|+.|+|++|+++ +.+|..++
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~-----------------------~~~~~~~~~~L~~L~Ls~N~l~-g~iP~~l~ 265 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGLSKNLNGLDLRNNRIY-GTLPQGLT 265 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCCCTTCCEEECCSSCCE-ECCCGGGG
T ss_pred cccccccccccccccccccccccccc-----------------------cccccccccccccccCccCeec-ccCChHHh
Confidence 5 455556667777777777765221 1333667788999999999985 67999999
Q ss_pred CCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCCCC
Q 005207 422 NLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQLP 467 (709)
Q Consensus 422 ~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp 467 (709)
.+++|++|+|++|+++ .+| .+.++++|+.+++++|+.+...| +|
T Consensus 266 ~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p-lp 310 (313)
T d1ogqa_ 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP-LP 310 (313)
T ss_dssp GCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT-SS
T ss_pred CCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCC-CC
Confidence 9999999999999999 777 46789999999999998777654 44
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=1.2e-21 Score=201.13 Aligned_cols=239 Identities=22% Similarity=0.298 Sum_probs=168.4
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
.++.+++++..++++|..+ ++++++|+|++|+|+.++. .|.++++|++|++++|++....+ .|.++++|++|++++|
T Consensus 11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 5677888888999999876 4789999999999999985 58899999999999998877765 4888899999999887
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.+..+|.... ..++.|++..+.+..++...
T Consensus 90 -~l~~l~~~~~--------------------------------~~l~~L~~~~n~l~~l~~~~----------------- 119 (305)
T d1xkua_ 90 -QLKELPEKMP--------------------------------KTLQELRVHENEITKVRKSV----------------- 119 (305)
T ss_dssp -CCSBCCSSCC--------------------------------TTCCEEECCSSCCCBBCHHH-----------------
T ss_pred -ccCcCccchh--------------------------------hhhhhhhccccchhhhhhhh-----------------
Confidence 4555553221 23344444444444333221
Q ss_pred CcCcccccCCccCcEEeeeCCCCC--CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccc
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKL--KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI 302 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~ 302 (709)
+.....+..++...+... ...+..+..+++|+.+++++|.+..++..+ +++|+.|++++|......+..+
T Consensus 120 ------~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~ 191 (305)
T d1xkua_ 120 ------FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL 191 (305)
T ss_dssp ------HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGG
T ss_pred ------hhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHh
Confidence 122222333333332221 122344556667777777777777766543 5788888888888777777778
Q ss_pred cCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 303 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 303 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
.+++.++.|++++|...+..+..+..+++|++|+|++|.++.+|..+..+++|++|++++|+
T Consensus 192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~ 253 (305)
T d1xkua_ 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253 (305)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred hccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence 88888888888888777777777788888888888888888888777777777777777776
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=3.4e-21 Score=197.64 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=190.2
Q ss_pred CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccc-cccccccCCcEEEcCCCC
Q 005207 46 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSE 122 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~ 122 (709)
.++.++.++..+..-+..+|+++++|++++|+++.+|. .| .+++|++|++++|.+..++ ..|.++++|+.|++++|+
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~ 90 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence 56788888888887777778999999999999999996 45 8999999999999999884 679999999999999998
Q ss_pred CCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCC--CcCCccccCCCccceeeccCCCc
Q 005207 123 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKL--RKFPHVVGSMECLQELLLDGTDI 200 (709)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~--~~~~~~l~~l~~L~~L~l~~~~i 200 (709)
+...+.. ..+.++.|++.+| .+..++.... .....++.++...+... ...+..+..+++|+.++++++.+
T Consensus 91 l~~l~~~--~~~~l~~L~~~~n-~l~~l~~~~~-----~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l 162 (305)
T d1xkua_ 91 LKELPEK--MPKTLQELRVHEN-EITKVRKSVF-----NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162 (305)
T ss_dssp CSBCCSS--CCTTCCEEECCSS-CCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred cCcCccc--hhhhhhhhhcccc-chhhhhhhhh-----hccccccccccccccccccCCCccccccccccCccccccCCc
Confidence 7655433 3468899999886 4555543322 12455667777776443 34456778888899999999988
Q ss_pred cccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
..+|..+ +++|+.|++++|......+..+.+++.+++|++++|.+....+..+.++++|++|+|++|.++.+|..+..
T Consensus 163 ~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~ 240 (305)
T d1xkua_ 163 TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240 (305)
T ss_dssp CSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred cccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence 8887654 57888888888877777777788888888888888888777777888888888888888888888878888
Q ss_pred CCCCCEEeccCCCCC
Q 005207 281 LPGLELLNLNDCKNF 295 (709)
Q Consensus 281 l~~L~~L~L~~~~~~ 295 (709)
+++|++|++++|++.
T Consensus 241 l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 241 HKYIQVVYLHNNNIS 255 (305)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred ccCCCEEECCCCccC
Confidence 888888888887654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.88 E-value=6.7e-23 Score=211.35 Aligned_cols=257 Identities=16% Similarity=0.219 Sum_probs=195.4
Q ss_pred CCCCCCcC--CcCCceEEEcccCCcc---ccccccccccCCcEEEcCC-CCCCCCCC-CCCCCCCccEEeccCCcccccc
Q 005207 78 LKSLPSNL--QLDKIVEFKMCYSRIE---ELWKGIKHLNMLKVMKLSH-SENLIKTP-DFTEAPNLEELYLEGCTKLRKV 150 (709)
Q Consensus 78 l~~lp~~~--~l~~L~~L~Ls~n~i~---~l~~~~~~l~~L~~L~Ls~-~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~ 150 (709)
+..+-++- ...+++.|+|+++++. .+|..+.++++|++|+|++ |.+...+| .++++++|++|+|++|. +..+
T Consensus 38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~ 116 (313)
T d1ogqa_ 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE
T ss_pred CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-cccc
Confidence 44554433 3447888888888877 4778888888888888886 55554444 58888888888888874 3333
Q ss_pred CcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCCCC-cEEecCCCCCCCcCc
Q 005207 151 HPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGL-VQLTLNDCKNLSSLP 228 (709)
Q Consensus 151 ~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L-~~L~L~~~~~l~~lp 228 (709)
++.. +..+.+|+.+++++|.....+|..+++++.|+.+++++|.+. .+|..+..+.++ +.+++++|+.....|
T Consensus 117 ~~~~-----~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~ 191 (313)
T d1ogqa_ 117 IPDF-----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCGG-----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred cccc-----ccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence 3321 223667888888888888888888888888888888888887 678888777765 778888777666667
Q ss_pred ccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 229 VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 229 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
..+..+.. ..+++..+...+..|..+..+++|+.+++.++.+...+..++.+++|+.|++++|++.+.+|..++++++|
T Consensus 192 ~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L 270 (313)
T d1ogqa_ 192 PTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp GGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCC
Confidence 66665544 46888888777778888888888888888888887666677888888888888888888888888888888
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeecccccc
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAV 342 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i 342 (709)
++|+|++|.+.+.+|. ++.+++|+.+++++|+.
T Consensus 271 ~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred CEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 8888888888777774 46778888888888763
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=1.7e-18 Score=180.48 Aligned_cols=71 Identities=28% Similarity=0.354 Sum_probs=60.0
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCCCCCccEEEec
Q 005207 397 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVN 476 (709)
Q Consensus 397 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~ 476 (709)
.+++|++|+|++|++. .+|.. +++|+.|+|++|+++.+|.. +++|++|+|++|+ ++.+|++|.+|+.|.+.
T Consensus 282 ~~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~ 352 (353)
T d1jl5a_ 282 LPPSLEELNVSNNKLI--ELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN 352 (353)
T ss_dssp CCTTCCEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred cCCCCCEEECCCCccC--ccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence 4578999999999985 46643 57899999999999999853 5689999999997 89999999999999874
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.7e-19 Score=182.66 Aligned_cols=218 Identities=22% Similarity=0.244 Sum_probs=133.2
Q ss_pred EEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccc
Q 005207 70 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKL 147 (709)
Q Consensus 70 ~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l 147 (709)
.+..++.+++++|..+ +..+++|+|++|+|+.++. .|..+++|++|++++|++....+ .+..++.++.+....+..+
T Consensus 15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 3456666777777654 3567888888888888774 57888888888888887665544 3667777777777665555
Q ss_pred cccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCc
Q 005207 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSS 226 (709)
Q Consensus 148 ~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~ 226 (709)
..+++.. +..+++|++|++++|......+..+..+.+|+.+++++|.++.+|. .+..+++|+.|++++|.....
T Consensus 94 ~~l~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 94 RSVDPAT-----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp CCCCTTT-----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccccchh-----hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 5554321 2235666677777766655555666666777777777777766653 344555566666665543333
Q ss_pred CcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCC
Q 005207 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCK 293 (709)
Q Consensus 227 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~ 293 (709)
.+..+.++++|+++++++|.+....|..+.++++|++|++++|.+..++. .++.+++|+.|++++|+
T Consensus 169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 33445555555555555555555555555555555555555555554442 34445555555555544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-19 Score=183.45 Aligned_cols=218 Identities=17% Similarity=0.205 Sum_probs=183.4
Q ss_pred eEEecCccccCcccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCC
Q 005207 49 LLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 49 ~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~ 125 (709)
.+.+++..+..-+..+|..+++|++++|+++.+|.. + .+++|++|++++|++..++. .+..+..++.+....+....
T Consensus 15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 345666666666667788999999999999999975 4 89999999999999998874 46778999999876554444
Q ss_pred CC-C-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcccc
Q 005207 126 KT-P-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 203 (709)
Q Consensus 126 ~~-~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l 203 (709)
.. + .|.++++|++|++++|. +..++... ....++|+.+++++|.+.+..+..+..+++|+.|++++|.++.+
T Consensus 95 ~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~-----~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 95 SVDPATFHGLGRLHTLHLDRCG-LQELGPGL-----FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-CCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cccchhhcccccCCEEecCCcc-cccccccc-----cchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 43 3 58999999999999984 34443322 23367899999999999887788899999999999999999987
Q ss_pred C-cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc
Q 005207 204 P-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 272 (709)
Q Consensus 204 p-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 272 (709)
+ ..+..+++|+.+++++|+.....|..|.++++|++|++++|.+....+..++.+++|++|++++|.+.
T Consensus 169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 6 46788999999999999988888899999999999999999999988999999999999999999876
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=7.9e-19 Score=175.88 Aligned_cols=175 Identities=22% Similarity=0.197 Sum_probs=107.2
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeC
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 315 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~ 315 (709)
+|++|+|++|.+....+..+.++++|++|+|++|.++.++. ++.+++|+.|++++|++.. .+..+..+++|+.|++++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~ 109 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF 109 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccc-cccccccccccccccccc
Confidence 45555555555444444455555556666666665555543 3455666666666655432 344455555666666666
Q ss_pred cCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCC
Q 005207 316 CCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSL 395 (709)
Q Consensus 316 ~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l 395 (709)
|...+..+..+..+.+++.|++++|.+..++... +
T Consensus 110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~---------------------------------------------~ 144 (266)
T d1p9ag_ 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGL---------------------------------------------L 144 (266)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---------------------------------------------T
T ss_pred cccceeeccccccccccccccccccccceecccc---------------------------------------------c
Confidence 5555544455555555666666665555544322 4
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeecccccc
Q 005207 396 SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458 (709)
Q Consensus 396 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 458 (709)
..++.|+.|++++|+++ +..+..+..+++|++|+|++|+|+.+|+++..+++|+.|+|++|+
T Consensus 145 ~~l~~l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccchhccccccccc-ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence 45566777777777774 445566777888888888888888888888788888888888775
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.9e-18 Score=171.72 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=138.7
Q ss_pred CccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 188 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
..+.+++.++++++++|..+. +++++|+|++|...+.-+.+|.++++|++|+|++|.+.. ++ .++.+++|++|+++
T Consensus 10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS 85 (266)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence 344445555566666665443 356666666654333223446666677777777665542 22 23567778888888
Q ss_pred CccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCc
Q 005207 268 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 347 (709)
Q Consensus 268 ~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~ 347 (709)
+|++...+..+..+++|+.|++++|......+..+..+.++++|++++|.+....+..+..+++|+.|++++|.++.++.
T Consensus 86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~ 165 (266)
T d1p9ag_ 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (266)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred cccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence 88888777778888888888888888777667777788888888888887777666777788888888888888876654
Q ss_pred ccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCC
Q 005207 348 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 427 (709)
Q Consensus 348 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 427 (709)
.. +..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus 166 ~~---------------------------------------------~~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~ 198 (266)
T d1p9ag_ 166 GL---------------------------------------------LNGLENLDTLLLQENSLY--TIPKGFFGSHLLP 198 (266)
T ss_dssp TT---------------------------------------------TTTCTTCCEEECCSSCCC--CCCTTTTTTCCCS
T ss_pred cc---------------------------------------------cccccccceeecccCCCc--ccChhHCCCCCCC
Confidence 32 445667777777777774 4777777788888
Q ss_pred EEEcCCCCCc
Q 005207 428 ELYLSKNNFV 437 (709)
Q Consensus 428 ~L~L~~n~l~ 437 (709)
.|+|++|.+.
T Consensus 199 ~L~L~~Np~~ 208 (266)
T d1p9ag_ 199 FAFLHGNPWL 208 (266)
T ss_dssp EEECCSCCBC
T ss_pred EEEecCCCCC
Confidence 8888888765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=3.1e-17 Score=170.80 Aligned_cols=303 Identities=21% Similarity=0.204 Sum_probs=161.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.++++|+++++.++++|. .+++|++|++++|+|+.+|+. +.+|+.|++++|++... +. ++
T Consensus 38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l-~~---lp----------- 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD---LP----------- 97 (353)
T ss_dssp HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS---CC-----------
T ss_pred cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchh-hh---hc-----------
Confidence 467777777777777775 245677777777777777643 34566666666543221 11 11
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
+.|++|++++|.+. .+|. ++.+++|+.|+++++.+...+... ..+..+.+..+....
T Consensus 98 ------------------~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~~ 154 (353)
T d1jl5a_ 98 ------------------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE 154 (353)
T ss_dssp ------------------TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS
T ss_pred ------------------cccccccccccccc-cccc-hhhhccceeecccccccccccccc---ccccchhhccccccc
Confidence 12344444444332 2232 345566666666666665544332 334444444432221
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
...+..++.++.+.++++....... .....+.+...++.+..++. ...+
T Consensus 155 --~~~l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~~~~~-------------------------~~~l 203 (353)
T d1jl5a_ 155 --LPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE-------------------------LQNL 203 (353)
T ss_dssp --CCCCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCCC-------------------------CTTC
T ss_pred --cccccccccceeccccccccccccc----cccccccccccccccccccc-------------------------cccc
Confidence 1123444555555555443322110 01112222222222222221 2344
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (709)
+.|+.+++++|.... ++. ...++..+.+..+.+...+.. .+++...++..+...
T Consensus 204 ~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~------------------- 257 (353)
T d1jl5a_ 204 PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS------------------- 257 (353)
T ss_dssp TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-------------------
T ss_pred ccccccccccccccc-ccc---ccccccccccccccccccccc---ccccccccccccccc-------------------
Confidence 555555555543221 221 123445555555554433322 233444444333210
Q ss_pred ccccccCCCCCCC-CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCC
Q 005207 386 CLVALMLPSLSGL-RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 386 ~~~~~~lp~l~~l-~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
.+..+ ......++..+.+. .+ ...+++|++|+|++|+++.+|+. +++|+.|++++| .++.+|
T Consensus 258 --------~l~~l~~~~~~~~~~~~~~~--~~---~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~ 320 (353)
T d1jl5a_ 258 --------GLSELPPNLYYLNASSNEIR--SL---CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVP 320 (353)
T ss_dssp --------EESCCCTTCCEEECCSSCCS--EE---CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred --------ccccccchhcccccccCccc--cc---cccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccc
Confidence 01111 23455666666553 22 34468999999999999999954 678999999999 588999
Q ss_pred CCCCCccEEEecCCCCcceecC
Q 005207 465 QLPPNIIFVKVNGCSSLVTLLG 486 (709)
Q Consensus 465 ~lp~sL~~L~i~~C~~L~~l~~ 486 (709)
+++++|++|++++|+ |++++.
T Consensus 321 ~~~~~L~~L~L~~N~-L~~lp~ 341 (353)
T d1jl5a_ 321 ELPQNLKQLHVEYNP-LREFPD 341 (353)
T ss_dssp CCCTTCCEEECCSSC-CSSCCC
T ss_pred cccCCCCEEECcCCc-CCCCCc
Confidence 999999999999997 888864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=7e-16 Score=150.16 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred cCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 87 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 87 l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
+.+|+.|++.+|+|+.+ +++..+++|+.|++++|++... +.+..+++|+.+++++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~-~~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGN 95 (227)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCSC
T ss_pred cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecc-ccccccccccccccccc
Confidence 33444444444444444 2344444444444444433221 12444444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=4.1e-15 Score=144.59 Aligned_cols=202 Identities=15% Similarity=0.211 Sum_probs=124.3
Q ss_pred eEEecCccccCcc--cccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCC
Q 005207 49 LLKINNVQLLEGL--EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIK 126 (709)
Q Consensus 49 ~L~l~~~~l~~~~--~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~ 126 (709)
.+++..+.+.+.. ..+ .+|+.|++.+|.+++++..-.+++|++|++++|+|+.+. .+..+++|+++++++|... .
T Consensus 23 ~~~l~~~~~~d~~~~~~l-~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~-~ 99 (227)
T d1h6ua2 23 KIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLK-N 99 (227)
T ss_dssp HHHTTCSSTTSEECHHHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCS-C
T ss_pred HHHhCCCCcCCcCCHHHc-CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc-ccccccccccccccccccc-c
Confidence 3444555554422 233 588889999998888865448899999999999988775 4788899999999988654 4
Q ss_pred CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc
Q 005207 127 TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 206 (709)
Q Consensus 127 ~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~ 206 (709)
.+.+.++++|+.+++++|... .+ ..+...+.++.+.++++.+... + .
T Consensus 100 i~~l~~l~~L~~l~l~~~~~~-~~-------~~~~~~~~~~~l~~~~~~~~~~------------------------~-~ 146 (227)
T d1h6ua2 100 VSAIAGLQSIKTLDLTSTQIT-DV-------TPLAGLSNLQVLYLDLNQITNI------------------------S-P 146 (227)
T ss_dssp CGGGTTCTTCCEEECTTSCCC-CC-------GGGTTCTTCCEEECCSSCCCCC------------------------G-G
T ss_pred ccccccccccccccccccccc-cc-------chhccccchhhhhchhhhhchh------------------------h-h
Confidence 566788888888888876321 11 1122234455555555443322 1 1
Q ss_pred cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCE
Q 005207 207 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 286 (709)
Q Consensus 207 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 286 (709)
+..+++|+.|++++|.... .+. ++++++|++|++++|.+.. ++ .++++++|++|++++|++++++. ++.+++|+.
T Consensus 147 ~~~~~~L~~L~l~~n~~~~-~~~-l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~ 221 (227)
T d1h6ua2 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFI 221 (227)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred hcccccccccccccccccc-chh-hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCE
Confidence 3334444445554443221 221 4556666666666664432 22 25566677777777777766653 667777777
Q ss_pred EeccC
Q 005207 287 LNLND 291 (709)
Q Consensus 287 L~L~~ 291 (709)
|++++
T Consensus 222 L~lsn 226 (227)
T d1h6ua2 222 VTLTN 226 (227)
T ss_dssp EEEEE
T ss_pred EEeeC
Confidence 77653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.8e-15 Score=146.40 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=69.4
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCC
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGC 144 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~ 144 (709)
.+.++.++..++.+|..+. .++++|+|++|+|+.++. .|.++++|++|++++|.+...++ .|.++++++++.+..+
T Consensus 10 ~~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 10 NRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SSEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CCEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 3577788888888887553 578888999888888875 47888888888888887765433 4677888888877765
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLK 176 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~ 176 (709)
..+..+++.. +..+++|+.+++++|.+
T Consensus 89 n~l~~~~~~~-----~~~l~~L~~l~l~~~~l 115 (242)
T d1xwdc1 89 NNLLYINPEA-----FQNLPNLQYLLISNTGI 115 (242)
T ss_dssp TTCCEECTTS-----EECCTTCCEEEEESCCC
T ss_pred cccccccccc-----ccccccccccccchhhh
Confidence 4554443321 12244455555554443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=6.8e-15 Score=141.07 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=97.7
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+|++|+++++.++.++..-.+++|++|++++|+|+.++ .+..+++|++|++++|++.. ++.+..+++|+.|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~~ 123 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG 123 (210)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC
T ss_pred cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc-ccccccccccccccccccc
Confidence 467777777777777665336777777777777777665 35667777777777776543 4456677777777777763
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
...+ ..+..+++++.+++++|.+.. +..+..+++|+.+++++|.++.++. +.++++|+.|++++|. ++
T Consensus 124 -~~~~-------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~ 191 (210)
T d1h6ta2 124 -ISDI-------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-IS 191 (210)
T ss_dssp -CCCC-------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC
T ss_pred -cccc-------ccccccccccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CC
Confidence 2221 223335556666666665443 2234455666666666666655542 5555666666666553 33
Q ss_pred cCcccccCCccCcEEeee
Q 005207 226 SLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls 243 (709)
.++. +.++++|++|+|+
T Consensus 192 ~l~~-l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 192 DLRA-LAGLKNLDVLELF 208 (210)
T ss_dssp BCGG-GTTCTTCSEEEEE
T ss_pred CChh-hcCCCCCCEEEcc
Confidence 4442 5555556655554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.1e-15 Score=143.95 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=133.0
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCccc-cc-cccccccCCcEEEcCCC-C
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEE-LW-KGIKHLNMLKVMKLSHS-E 122 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~-l~-~~~~~l~~L~~L~Ls~~-~ 122 (709)
+.+++++..+...+..+|.++++|++++|.++.+|.. | .+++|++|++++|.+.. ++ ..+..+++++.+.+..+ .
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~ 90 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence 6778887777766666778999999999999999975 4 79999999999999875 43 45889999999998764 4
Q ss_pred CCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCC-CccceeeccCCCc
Q 005207 123 NLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM-ECLQELLLDGTDI 200 (709)
Q Consensus 123 ~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l-~~L~~L~l~~~~i 200 (709)
+....+ .|.++++|++|++++| .+...+. ...+..+..+..+...++.+....+..+..+ ..++.|++++|.+
T Consensus 91 l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~----~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l 165 (242)
T d1xwdc1 91 LLYINPEAFQNLPNLQYLLISNT-GIKHLPD----VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165 (242)
T ss_dssp CCEECTTSEECCTTCCEEEEESC-CCCSCCC----CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccccccccccccccccccchh-hhccccc----ccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 444444 4789999999999997 4444332 1223334556666666655555445555554 3677788888877
Q ss_pred cccCcccccCCCCcEEecCCCCCCCcCccc-ccCCccCcEEeeeCCCCC
Q 005207 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKL 248 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~ 248 (709)
+.++.......+++.+....++.++.+|.. |.++++|++|++++|.+.
T Consensus 166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence 777766666666665554444445555432 444555555555554433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=5.2e-15 Score=141.93 Aligned_cols=164 Identities=21% Similarity=0.277 Sum_probs=137.9
Q ss_pred CCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCC
Q 005207 43 LMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 120 (709)
.+.+|+.|+++++.+.. ++..+ ++|++|++++|+++.++....+++|++|++++|+|+.++ .+..+++|+.|++++
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~l~~l-~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~ 121 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQGIQYL-PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred HhcCccEEECcCCCCCCchhHhhC-CCCCEEeCCCccccCccccccCccccccccccccccccc-ccccccccccccccc
Confidence 45688999999998763 56666 499999999999999997668999999999999999987 688999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCc
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i 200 (709)
|... ..+.+..+++|+.+++++|. +... .....+++|+++++++|.+.+. + .++++++|+.|++++|.+
T Consensus 122 ~~~~-~~~~l~~l~~l~~l~~~~n~-l~~~-------~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i 190 (210)
T d1h6ta2 122 NGIS-DINGLVHLPQLESLYLGNNK-ITDI-------TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI 190 (210)
T ss_dssp SCCC-CCGGGGGCTTCCEEECCSSC-CCCC-------GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred cccc-cccccccccccccccccccc-cccc-------cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence 9754 45678899999999999973 3332 2234478899999999988753 3 388999999999999999
Q ss_pred cccCcccccCCCCcEEecCC
Q 005207 201 KELPLSIEHLFGLVQLTLND 220 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~ 220 (709)
+.+| .+.++++|++|+|++
T Consensus 191 ~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 191 SDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CBCG-GGTTCTTCSEEEEEE
T ss_pred CCCh-hhcCCCCCCEEEccC
Confidence 9987 589999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.4e-14 Score=137.66 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 143 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~ 143 (709)
++++|+++++.+++++..-.+++|++|++++|+++.++. +.++++|+.|++++|.... .+.++++++|+.|++++
T Consensus 41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~ 115 (199)
T d2omxa2 41 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFN 115 (199)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECCS
T ss_pred CCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccccccccc-ccccccccccccccccc
Confidence 455555555555444332244444555555444444432 4444444444444443222 22244444444444444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=2.3e-14 Score=136.09 Aligned_cols=173 Identities=16% Similarity=0.251 Sum_probs=125.5
Q ss_pred CCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCccc
Q 005207 75 RYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSL 154 (709)
Q Consensus 75 ~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i 154 (709)
.+.++..+....+.++++|++++++|+.+ +++..+++|++|++++|++... +.++++++|++|++++|. +..++
T Consensus 27 ~~~~~~~~~~~~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~-~~l~~l~~L~~L~l~~n~-~~~~~--- 100 (199)
T d2omxa2 27 KTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQ-IADIT--- 100 (199)
T ss_dssp CSSTTSEECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCG---
T ss_pred CCCCCCccCHHHhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCc-ccccCCcccccccccccc-ccccc---
Confidence 33344433333567888888888888877 4678888888888888876543 448888888888888873 33333
Q ss_pred ccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCC
Q 005207 155 LLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSF 234 (709)
Q Consensus 155 ~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l 234 (709)
.+..+++|+.|++++|..... ..+..+++|+.|++++|.+..++ .+..+++|+.|++.+|+. ..++. ++++
T Consensus 101 ----~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l-~~l~~-l~~l 171 (199)
T d2omxa2 101 ----PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQV-TDLKP-LANL 171 (199)
T ss_dssp ----GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG-GTTC
T ss_pred ----ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccc-cCCcc-ccCC
Confidence 244577888888888776553 34677888888888888887765 577888888898888754 44554 7888
Q ss_pred ccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 235 QCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 235 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
++|++|++++|.+.. ++ .++++++|++|
T Consensus 172 ~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 172 TTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp TTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 899999999887554 33 46778888765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.7e-16 Score=169.61 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=29.3
Q ss_pred CccEEEeeCCCCCCCC--CcC-CcCCceEEEcccCCcc-----ccccccccccCCcEEEcCCCCC
Q 005207 67 KLRLLDWHRYPLKSLP--SNL-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSEN 123 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp--~~~-~l~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~ 123 (709)
+|+.|++++++++... ..+ .++++++|+|++|+|+ .+...+..+++|+.|+|++|++
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i 67 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence 4556666666554421 111 4555566666666554 2333445555566666655543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.3e-16 Score=170.13 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=58.4
Q ss_pred CcceEEecCccccCc-----ccccCcCccEEEeeCCCCCC-----CCCcC-CcCCceEEEcccCCccc-----cccccc-
Q 005207 46 NLGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKS-----LPSNL-QLDKIVEFKMCYSRIEE-----LWKGIK- 108 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~-----~~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~Ls~n~i~~-----l~~~~~- 108 (709)
+|+.|+++.+++++. +..+ +++|.|++++|.++. ++..+ ..++|++|+|++|+|+. +.+.+.
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l-~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 566677777666531 1222 467777777776542 22222 56677888888777752 223332
Q ss_pred cccCCcEEEcCCCCCCCCC-----CCCCCCCCccEEeccCCc
Q 005207 109 HLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 109 ~l~~L~~L~Ls~~~~~~~~-----~~~~~l~~L~~L~L~~~~ 145 (709)
...+|++|+|++|++.... ..+..+++|++|++++|.
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 2346777777777654331 235667777777777763
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.5e-15 Score=151.36 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcC
Q 005207 395 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLK 450 (709)
Q Consensus 395 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~ 450 (709)
+.++++|++|+|++|.-..+.....++.+++|+.|++++| +. .++.....+|+|+
T Consensus 196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence 4456677777777763222333344666777777777776 22 2332234455554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.3e-14 Score=144.18 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=61.3
Q ss_pred CcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccce
Q 005207 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQE 192 (709)
Q Consensus 113 L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~ 192 (709)
+..+.++...............+|++|++++|......... -+..+++|++|++++|.+....+..++.+++|++
T Consensus 25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~-----l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 99 (284)
T d2astb2 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99 (284)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHH-----HHHhCCCcccccccccCCCcHHHHHHhcCCCCcC
Confidence 34455554433222223334557777777776321111111 1223556666666666655555555556666666
Q ss_pred eeccCC-Ccc--ccCcccccCCCCcEEecCCCCCCCc--Ccccc-cCCccCcEEeeeCC
Q 005207 193 LLLDGT-DIK--ELPLSIEHLFGLVQLTLNDCKNLSS--LPVAI-SSFQCLRNLKLSGC 245 (709)
Q Consensus 193 L~l~~~-~i~--~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~l-~~l~~L~~L~Ls~~ 245 (709)
|+++++ .++ .+......+++|++|++++|..+.. +...+ ...++|+.|++++|
T Consensus 100 L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred ccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence 666653 343 2222334556666666666544321 11111 11345555555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.39 E-value=5.8e-13 Score=125.39 Aligned_cols=131 Identities=23% Similarity=0.301 Sum_probs=93.6
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
.+.++.++++++.+|..+ .+++++|+|++|.+.+.+ +..+.++++|+.|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 346777888888888755 367888888888876544 45567788888888888887777777777778888888888
Q ss_pred cccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCC
Q 005207 340 TAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419 (709)
Q Consensus 340 n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~ 419 (709)
|.+..+++.. |.++++|++|+|++|++. ...+..
T Consensus 88 N~l~~l~~~~---------------------------------------------F~~l~~L~~L~L~~N~l~-~i~~~~ 121 (192)
T d1w8aa_ 88 NKIKEISNKM---------------------------------------------FLGLHQLKTLNLYDNQIS-CVMPGS 121 (192)
T ss_dssp CCCCEECSSS---------------------------------------------STTCTTCCEEECCSSCCC-EECTTS
T ss_pred ccccccCHHH---------------------------------------------HhCCCcccccccCCcccc-ccCHHH
Confidence 8777665432 455666666666666664 344556
Q ss_pred CCCCCCCCEEEcCCCCCccc
Q 005207 420 IGNLHSLNELYLSKNNFVTL 439 (709)
Q Consensus 420 l~~l~~L~~L~L~~n~l~~l 439 (709)
+..+++|++|+|++|.+...
T Consensus 122 f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 122 FEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp STTCTTCCEEECTTCCBCCS
T ss_pred hcCCcccccccccccccccc
Confidence 77777888888888777643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.7e-13 Score=123.54 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=57.8
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
++.++++|+|++|+|+.++..+..+++|+.|+|++|++... +.+..+++|++|++++| .+..+++.+.. .+++
T Consensus 16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N-~i~~l~~~~~~-----~l~~ 88 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQ-----ALPD 88 (162)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHH-----HCTT
T ss_pred CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccc-cccCCCccccc-----cccc
Confidence 44445555555555555544444455555555555544322 34455555555555554 23333332211 1334
Q ss_pred ccEEEccCCCCCCcC-CccccCCCccceeeccCCCccccCc----ccccCCCCcEEe
Q 005207 166 LKILILSGCLKLRKF-PHVVGSMECLQELLLDGTDIKELPL----SIEHLFGLVQLT 217 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~-~~~l~~l~~L~~L~l~~~~i~~lp~----~l~~l~~L~~L~ 217 (709)
|+.|++++|.+...- ...+..+++|++|++++|.+...|. .+..+++|+.||
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 444444444433211 1234455555666666655555442 234445555444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=1.1e-12 Score=123.52 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=76.5
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcC-cccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
+.++.++++++++|..+. .++++|+|++|.....+ +..|.++++|+.|++++|.+....+..+..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 467777777777776553 56677777776654433 334566666666666666666666666666666666666666
Q ss_pred cCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCC
Q 005207 270 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 270 ~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~ 318 (709)
++..++. .|..+++|++|+|++|.+....+..+..+++|++|++++|+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence 6665543 355566666666666555554455555555555555555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=5e-12 Score=109.36 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=53.9
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
|+|++++|.++.++....+.+|++|++++|+|+.+|.++..+++|+.|++++|++.. .+.+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cCccccccccCeEECCCC
Confidence 567777777777765447777777777777777777777777777777777776543 345677777777777775
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.8e-12 Score=115.81 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=91.0
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
+.+...|++|+|++|.+... +..+..+++|+.|++++|.|..++ .+..+++|+.|++++|.+....+..+..+++|++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence 44455667777777665443 445566777777788888777774 4677788888888888766554455567888888
Q ss_pred EEeeCcCCCccC-CccccCCCccceeeccccccccCCc----ccccccCCcEEEcc
Q 005207 311 LNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPS----SVFLMKNLRTLSFS 361 (709)
Q Consensus 311 L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~l~~----~~~~l~~L~~L~L~ 361 (709)
|++++|.+...- ...+..+++|+.|++++|.++..|. .+..+|+|++||-.
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 888887765421 1456778889999999998887764 46678899988743
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.5e-11 Score=106.18 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=70.7
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccc
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (709)
|.|++++|.+. .++ .++.+++|++|++++|.++.+|..+..+++|+.|++++|....
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--------------------- 57 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--------------------- 57 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---------------------
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc---------------------
Confidence 35666665554 233 3566677777777777777777666667777777777766321
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccC---hh-hhcCCCcCee
Q 005207 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP---AS-INSLLNLKEL 452 (709)
Q Consensus 389 ~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp---~~-i~~l~~L~~L 452 (709)
+|.+..+++|+.|++++|++.+......+..+++|+.|++++|+++..+ .. ...+|+|+.|
T Consensus 58 ---l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 58 ---VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp ---CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ---cCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 2335566777777777777743222234666777777777777766433 22 2335555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.21 E-value=1.1e-12 Score=135.69 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=20.2
Q ss_pred cCCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCc
Q 005207 232 SSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSIT 272 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~ 272 (709)
..+++|+.|++++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 134 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence 3445555555555554332 2223334555555665555543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.17 E-value=1.7e-12 Score=134.19 Aligned_cols=189 Identities=14% Similarity=0.161 Sum_probs=93.0
Q ss_pred cCCCccEEEccCCCCCCc----CCccccCCCccceeeccCCCccc-----cCcccccCCCCcEEecCCCCCCCcCccccc
Q 005207 162 FVESLKILILSGCLKLRK----FPHVVGSMECLQELLLDGTDIKE-----LPLSIEHLFGLVQLTLNDCKNLSSLPVAIS 232 (709)
Q Consensus 162 ~l~~L~~L~Ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 232 (709)
..++|+.|++++|.+... +...+..+++|++|++++|.+.. +...+..+ . ......
T Consensus 91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~------~---------~~~~~~ 155 (344)
T d2ca6a1 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL------A---------VNKKAK 155 (344)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH------H---------HHHHHH
T ss_pred hCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccccccc------c---------cccccc
Confidence 345666666666655432 23334455666667666666541 10111000 0 000011
Q ss_pred CCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCcc------cCcccCCCCCCCEEeccCCCCCcc----c
Q 005207 233 SFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSITE------VPSSIELLPGLELLNLNDCKNFAR----V 298 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~------l~~~~~~l~~L~~L~L~~~~~~~~----l 298 (709)
..+.|+.+.++++.+... +...+...+.|++|++++|.+.. +...+...++|+.|++++|.+... +
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence 234455555555443321 12223444555566665555542 222344556666666666654321 2
Q ss_pred cccccCCCCCCEEEeeCcCCCcc----CCccccC--CCccceeecccccccc-----CCcccc-cccCCcEEEccCCCC
Q 005207 299 PSSINGLKSLKTLNLSGCCKLEN----VPDTLGQ--VESLEELDISETAVRR-----PPSSVF-LMKNLRTLSFSGCNG 365 (709)
Q Consensus 299 ~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~--l~~L~~L~L~~n~i~~-----l~~~~~-~l~~L~~L~L~~~~~ 365 (709)
...+..+++|++|++++|.+... +...+.. .+.|++|++++|.|.. +...+. +.++|++|++++|+.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 33445566666666666665432 1122222 3567777777777652 333332 467788888888774
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.99 E-value=6.1e-12 Score=118.55 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCC
Q 005207 180 FPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTME 259 (709)
Q Consensus 180 ~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 259 (709)
++..++.+++|++|++++|.|+.++ .+..+++|+.|++++|. +..+|.....+++|+.|++++|.+... ..+..++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~ 115 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASL--SGIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-ccccccccccccccccccccccccccc--ccccccc
Confidence 3444555666666666666666554 35566666666666553 334443333344566666666554432 2344555
Q ss_pred CCCeeeccCccCcccCc--ccCCCCCCCEEeccCCCC
Q 005207 260 DLSELNLDGTSITEVPS--SIELLPGLELLNLNDCKN 294 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~L~~~~~ 294 (709)
+|+.|++++|.++.++. .+..+++|+.|++++|++
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cccccccccchhccccccccccCCCccceeecCCCcc
Confidence 66666666666655432 345555555555555543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.99 E-value=2.7e-12 Score=121.01 Aligned_cols=106 Identities=23% Similarity=0.308 Sum_probs=84.0
Q ss_pred hhhhcCCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCc
Q 005207 38 AKAFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLK 114 (709)
Q Consensus 38 ~~~f~~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 114 (709)
+.+|..+++|+.|++++|.+.. ++..+ ++|++|++++|.++.+|... .+++|++|++++|+|+.++ ++..+++|+
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l-~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~ 118 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEKISSLSGM-ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESCCCCHHHH-TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred hhHHhcccccceeECcccCCCCcccccCC-ccccChhhcccccccccccccccccccccccccccccccc-ccccccccc
Confidence 3678999999999999998763 34444 58999999999998888655 4567999999999988874 577888999
Q ss_pred EEEcCCCCCCCCC--CCCCCCCCccEEeccCCc
Q 005207 115 VMKLSHSENLIKT--PDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 115 ~L~Ls~~~~~~~~--~~~~~l~~L~~L~L~~~~ 145 (709)
.|++++|++.... ..+..+++|+.|++++|+
T Consensus 119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ccccccchhccccccccccCCCccceeecCCCc
Confidence 9999988865432 357788888888888874
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5e-09 Score=94.00 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=74.9
Q ss_pred CccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 188 ECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
...+.++.+++++.++|..+..+++|++|++.+++.++.++. +|.++++|+.|++++|.+....+..|..+++|++|+|
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 344567777777777777777777888888877666666553 4777778888888777777666777777777777777
Q ss_pred cCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 267 DGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 267 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
++|+++.+|.......+|+.|+|++|++
T Consensus 88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 88 SFNALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCCCcccChhhhccccccccccCCCcc
Confidence 7777777766544444566666666553
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=6.7e-09 Score=93.15 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=85.5
Q ss_pred CCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecc
Q 005207 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV-PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 338 (709)
..+.++..++.+.+.|..+..+++|++|++.+++.+..+ +..|.++++|+.|++++|.+....+..+..+++|++|+|+
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 345677777777777777888888888888776544444 4568888899999999888777777888889999999999
Q ss_pred ccccccCCcccccccCCcEEEccCCCC
Q 005207 339 ETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 339 ~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
+|.++.+|...+...+|++|+|++|..
T Consensus 89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 89 FNALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCCcccChhhhccccccccccCCCcc
Confidence 999999988888777899999999874
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=6.5e-06 Score=73.55 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=36.2
Q ss_pred CccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCcccc-------cccc
Q 005207 234 FQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVP-------SSIN 303 (709)
Q Consensus 234 l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~-------~~~~ 303 (709)
+++|++|++++|.+... ++..+..+++|+.|++++|.|+.++.. .....+|+.|++++|++..... ..+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 44444444444444322 223344455555555555555544431 1122345555555555443222 1134
Q ss_pred CCCCCCEEE
Q 005207 304 GLKSLKTLN 312 (709)
Q Consensus 304 ~l~~L~~L~ 312 (709)
.+|+|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 556666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=3.4e-06 Score=75.51 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=36.3
Q ss_pred hhhccCCCCCeeeccCccCcccCc---ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 253 QIVTTMEDLSELNLDGTSITEVPS---SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~~l~~---~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
.....+++|++|+|++|+|+.++. .+..+++|+.|++++|.+...-+-......+|+.|++++|+..
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 344567778888888887776542 3445666666666666544322211222234444555554443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.03 E-value=0.00023 Score=63.36 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=28.4
Q ss_pred cCCccCcEEeeeCCCCCC----cCchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCC
Q 005207 232 SSFQCLRNLKLSGCSKLK----KFPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~----~~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~ 292 (709)
...++|++|++++|.+.. .+...+...+.|++|+|++|.+.. +...+...+.|++|++++|
T Consensus 41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 334445555555544432 122233344555555555555542 2223444555555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.96 E-value=0.00032 Score=62.45 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=5.6
Q ss_pred CCCccEEeccC
Q 005207 133 APNLEELYLEG 143 (709)
Q Consensus 133 l~~L~~L~L~~ 143 (709)
.+.|++|+|++
T Consensus 14 ~~~L~~L~L~~ 24 (167)
T d1pgva_ 14 DTDLKEVNINN 24 (167)
T ss_dssp CSSCCEEECTT
T ss_pred CCCCcEEEeCC
Confidence 34555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.90 E-value=0.0012 Score=58.52 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=28.5
Q ss_pred CCCCCEEEeeCcCCCcc----CCccccCCCccceeecc--ccccc-----cCCcccccccCCcEEEccCCC
Q 005207 305 LKSLKTLNLSGCCKLEN----VPDTLGQVESLEELDIS--ETAVR-----RPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~--~n~i~-----~l~~~~~~l~~L~~L~L~~~~ 364 (709)
.++++.+++++|..... +...+...++|+.++|+ +|.+. .+...+...++|++|+++.+.
T Consensus 73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 34455555544443321 22334444555554432 33443 233444556777777776543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.73 E-value=0.0031 Score=55.61 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=15.5
Q ss_pred CCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCC
Q 005207 186 SMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 186 ~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~ 221 (709)
..++|++|++++|.+. .+-..+...+.++.+++++|
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence 3444444444444443 12223334444444444444
|