Citrus Sinensis ID: 005212
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | 2.2.26 [Sep-21-2011] | |||||||
| Q14149 | 939 | MORC family CW-type zinc | yes | no | 0.548 | 0.414 | 0.316 | 4e-45 | |
| Q8BMD7 | 928 | MORC family CW-type zinc | no | no | 0.557 | 0.425 | 0.315 | 6e-39 | |
| Q8TE76 | 937 | MORC family CW-type zinc | no | no | 0.552 | 0.418 | 0.302 | 1e-36 | |
| Q8C5W4 | 1022 | MORC family CW-type zinc | no | no | 0.349 | 0.242 | 0.292 | 3e-23 | |
| Q9Y6X9 | 1032 | MORC family CW-type zinc | no | no | 0.352 | 0.242 | 0.297 | 3e-23 | |
| Q69ZX6 | 1030 | MORC family CW-type zinc | no | no | 0.352 | 0.242 | 0.294 | 8e-23 | |
| Q9WVL5 | 950 | MORC family CW-type zinc | no | no | 0.368 | 0.274 | 0.275 | 2e-22 | |
| Q86VD1 | 984 | MORC family CW-type zinc | no | no | 0.545 | 0.393 | 0.218 | 1e-19 |
| >sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 | Back alignment and function desciption |
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Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 225/446 (50%), Gaps = 57/446 (12%)
Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
P +L T +H+ W F A+AEL+DN+ D +I I+ K D L+ D+G+
Sbjct: 16 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70
Query: 301 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
GMT + +M FG + + +G +G GFK+G+MRLGKDA+V T+ +S S+ L
Sbjct: 71 GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130
Query: 360 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 415
SQ+ + +++ +PIV++ + Q + L A +K +L +I E S F+ + L+
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183
Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 474
E + K GT+I IWNL + + E+D + D+ I ++ + +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239
Query: 475 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 529
+ Q P DYSLR+Y +++L PRM+I ++G V+++ ++KSL +E + + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297
Query: 530 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 583
+ +T G NC GI +Y RLI+AY++VG + + G GV+G+I
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347
Query: 584 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 637
E N L H NKQ F Y LG+ ++YW+ N LN+ +
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401
Query: 638 ALYKPDQEWVQCNKCRKWRMLDPGFD 663
+PDQ WVQC+ C KWR L G D
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD 427
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Homo sapiens (taxid: 9606) |
| >sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| 255583448 | 754 | zinc finger protein, putative [Ricinus c | 0.902 | 0.848 | 0.687 | 0.0 | |
| 359476999 | 760 | PREDICTED: MORC family CW-type zinc fing | 0.904 | 0.843 | 0.645 | 0.0 | |
| 296088514 | 596 | unnamed protein product [Vitis vinifera] | 0.726 | 0.864 | 0.713 | 0.0 | |
| 356495297 | 692 | PREDICTED: MORC family CW-type zinc fing | 0.710 | 0.728 | 0.655 | 0.0 | |
| 222635901 | 800 | hypothetical protein OsJ_22008 [Oryza sa | 0.888 | 0.787 | 0.526 | 0.0 | |
| 115468994 | 792 | Os06g0622000 [Oryza sativa Japonica Grou | 0.888 | 0.795 | 0.526 | 0.0 | |
| 357484261 | 577 | MORC family CW-type zinc finger protein | 0.677 | 0.831 | 0.668 | 0.0 | |
| 218198566 | 766 | hypothetical protein OsI_23737 [Oryza sa | 0.840 | 0.778 | 0.486 | 1e-171 | |
| 242096394 | 758 | hypothetical protein SORBIDRAFT_10g02439 | 0.836 | 0.782 | 0.461 | 1e-162 | |
| 413954785 | 785 | hypothetical protein ZEAMMB73_569962 [Ze | 0.857 | 0.774 | 0.479 | 1e-161 |
| >gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/653 (68%), Positives = 518/653 (79%), Gaps = 13/653 (1%)
Query: 23 DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 81
D + Y+ L KD KPICRT+CLNPP +P WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31 DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90
Query: 82 RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 141
RD NEW+RFL YLQ R+ V IAKF+F FYILPP + NF++++VAY+ EKT N + +
Sbjct: 91 RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149
Query: 142 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 197
H ES +CQ V + T+P + +R N ++A EDN +
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207
Query: 198 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 257
+KFS +GD L E TI R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323
Query: 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377
PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383
Query: 378 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437
RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443
Query: 438 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR 497
WGS YCL+W GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYSLRSYLEVIFLVPR
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503
Query: 498 MKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557
M+IYVQGSLV+SRPLAKSL+ TC T I+GK HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563
Query: 558 IEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLG 617
IEAYKRVGGM H G G GVIGVIDV+DLMD GNG VWVH+NKQGF DCEPY RLE WLG
Sbjct: 564 IEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLG 622
Query: 618 KVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVE 670
K DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L G+D K+L +E
Sbjct: 623 KKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLE 675
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| ZFIN|ZDB-GENE-030131-1502 | 1079 | morc3a "MORC family CW-type zi | 0.572 | 0.376 | 0.319 | 1.6e-43 | |
| UNIPROTKB|F1MFY1 | 960 | MORC3 "Uncharacterized protein | 0.561 | 0.414 | 0.327 | 1e-42 | |
| UNIPROTKB|F1PFJ7 | 939 | MORC3 "Uncharacterized protein | 0.555 | 0.419 | 0.326 | 1.5e-41 | |
| UNIPROTKB|F1SGX2 | 940 | MORC3 "Uncharacterized protein | 0.558 | 0.421 | 0.317 | 1.6e-40 | |
| UNIPROTKB|Q14149 | 939 | MORC3 "MORC family CW-type zin | 0.557 | 0.420 | 0.315 | 3.6e-40 | |
| ZFIN|ZDB-GENE-040801-98 | 763 | morc3b "MORC family CW-type zi | 0.558 | 0.519 | 0.324 | 3.4e-38 | |
| UNIPROTKB|F1P2D9 | 926 | MORC3 "Uncharacterized protein | 0.562 | 0.430 | 0.309 | 6.6e-38 | |
| MGI|MGI:1922996 | 928 | Morc4 "microrchidia 4" [Mus mu | 0.551 | 0.421 | 0.320 | 1.5e-35 | |
| UNIPROTKB|Q8TE76 | 937 | MORC4 "MORC family CW-type zin | 0.552 | 0.418 | 0.308 | 9.4e-34 | |
| UNIPROTKB|F1P705 | 898 | MORC4 "Uncharacterized protein | 0.554 | 0.437 | 0.304 | 3.1e-33 |
| ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 485 (175.8 bits), Expect = 1.6e-43, P = 1.6e-43
Identities = 142/445 (31%), Positives = 225/445 (50%)
Query: 240 DPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDG 299
+P +L T +H+ W F AIAEL+DN+ D + + I+ + G+D L +D+G
Sbjct: 15 NPKFLHTNSTSHT-WPFSAIAELIDNAYDPDVSAKQFWIDKTAIR--GEDC--LIFMDNG 69
Query: 300 HGMTHQDVVRMTYFGHKQPDADDPN-RIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAF 358
GM + + +M FG + + + +G +G GFK+G+MRLG+DA+V ++ +S +
Sbjct: 70 SGMDNDKMFKMLSFGFSDKETINGHVPVGLYGNGFKSGSMRLGRDAIVFSKNKESMCVGL 129
Query: 359 LSQSLNQG--KDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LI 414
LSQ+ + +N+ +PIVS+ R GQ M EA +L I ++S F L+
Sbjct: 130 LSQTYLEAIQAENVIVPIVSFKRVGQSM------LPEAQHAASLHDILQYSLFRTEAELL 183
Query: 415 GEKAGL---FQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXX 471
E + + ++CTGT+I +WNL + S E+D ++ ++
Sbjct: 184 CELKAINAHYANECTGTRIIVWNLRKTSSGKS-EFDFDIDRYDIQIPAEVYENEKEKYKQ 242
Query: 472 PGQISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVET--GIIMG 528
P + Q P D+SLR+Y +++L P+M+I ++G V+++ ++KSL + +
Sbjct: 243 PCRTFQSSPESDFSLRAYCSILYLKPKMQIILRGQKVKTQLISKSLAHIVKDKYKPNFLN 302
Query: 529 KSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMD 588
+ +T G E G+ +Y RLI+AY+RVG + G GVI VI
Sbjct: 303 ERIPITFGYNTKSKEHY--GVMMYHKNRLIKAYERVGCQNRANEKGVGVIAVI------- 353
Query: 589 EGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD---NK--FDSLNVVKDGALYKPD 643
E N L HN KQ F E Y R LG +EYW +K FD+ N+ + +PD
Sbjct: 354 ECNFLKPTHN-KQDFDYTEEYRRTITTLGVKLEEYWKAIRHKKGFDN-NLPMEDIPKRPD 411
Query: 644 QEWVQCNKCRKWRMLDPGFDTKSLP 668
Q WVQC++C KWR L G D LP
Sbjct: 412 QNWVQCDECLKWRKLPDGIDMNKLP 436
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| UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006004001 | SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (596 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 709 | |||
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 4e-22 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 7e-07 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 2e-06 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 3e-06 | |
| pfam07496 | 50 | pfam07496, zf-CW, CW-type Zinc Finger | 5e-05 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-04 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 4e-04 | |
| PRK05218 | 613 | PRK05218, PRK05218, heat shock protein 90; Provisi | 5e-04 | |
| COG0326 | 623 | COG0326, HtpG, Molecular chaperone, HSP90 family [ | 0.001 |
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 4e-22
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 315
AIAEL+DNS DA AT ++ISI+ + +SI D+G GM+++++ G
Sbjct: 4 EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57
Query: 316 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374
+ + + +GR G+G K ++ LG+ V ++ S L + ++P
Sbjct: 58 SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117
Query: 375 V 375
+
Sbjct: 118 L 118
|
This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134 |
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
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| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
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| >gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger | Back alignment and domain information |
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| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
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| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
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| >gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional | Back alignment and domain information |
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| >gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.93 | |
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.87 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 99.85 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.83 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 99.83 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 99.82 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 99.78 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.68 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 99.64 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 99.62 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.51 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.46 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.32 | |
| PF07496 | 50 | zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi | 99.08 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.01 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 98.84 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 98.82 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 98.71 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 98.71 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 98.57 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 98.48 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 98.39 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 98.28 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.25 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 98.24 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 98.22 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 98.2 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 98.08 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 98.06 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 97.66 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 97.48 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 97.38 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 97.32 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.32 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.23 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 97.23 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 97.09 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.07 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 97.03 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 97.02 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 96.96 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.9 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.76 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.76 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.76 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.74 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 96.67 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.64 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 96.61 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 96.57 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.53 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 96.44 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.44 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 96.34 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.14 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.11 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 95.87 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.83 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.68 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 95.62 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 95.57 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 95.51 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 95.42 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.29 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 95.23 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 95.21 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 95.17 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 95.12 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 95.03 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 94.92 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 94.67 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 94.46 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 93.95 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 93.85 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 93.53 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 93.46 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 93.4 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 93.33 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 93.01 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 92.82 | |
| PRK13557 | 540 | histidine kinase; Provisional | 92.7 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 92.56 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 92.36 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 91.7 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 91.08 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 90.57 | |
| PF07744 | 119 | SPOC: SPOC domain; InterPro: IPR012921 Spen (split | 89.85 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 89.32 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 89.32 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 89.28 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 87.25 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 86.48 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 85.88 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 85.81 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 83.52 |
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=261.49 Aligned_cols=371 Identities=23% Similarity=0.285 Sum_probs=265.2
Q ss_pred CCCceeeecCCCCceeeecCHHHHHHhccccccCHHHHHHHHHhccccc---CCCccEEEEEeceeccCCCCcCEEEEE-
Q 005212 221 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII- 296 (709)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~p~~L~slstshi~~~f~AIaELIDNA~DA---~A~~I~I~I~~~~~~~~~~~~~~L~I~- 296 (709)
.++..+.....++..++.++|+|||+++|+| .|.++|++||+|||+|- +|+-+.|.-.. ...+.....++|.
T Consensus 114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I~---p~~d~~i~a~~v~~ 189 (775)
T KOG1845|consen 114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYIN---PVMDIFIRALVVQL 189 (775)
T ss_pred cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeeec---ccccccceeEEeec
Confidence 4445556666666799999999999999999 79999999999999997 45554433221 1112223444554
Q ss_pred ----eCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeC------CCCceeEEEeecc--
Q 005212 297 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN-- 364 (709)
Q Consensus 297 ----DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~------g~~svg~ls~tf~-- 364 (709)
|||.||.++-+...|..|.+.+. +-...+|+||+||++..|++|.+++|++|.. ..+++|+++++|.
T Consensus 190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~ 268 (775)
T KOG1845|consen 190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK 268 (775)
T ss_pred cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence 78999999999999999998775 3367899999999999999999999999943 3578999999995
Q ss_pred CCCccEEEcC----cccCCC---CcEEEEEeccchhhhhhhhhh-----hhhhcCCCcch--hHHHhh-------cc---
Q 005212 365 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEKA-------GL--- 420 (709)
Q Consensus 365 eg~~~i~VPi----~~~~~~---Gt~I~l~~~~e~e~~~e~~L~-----~I~kySPF~s~--~I~e~~-------~~--- 420 (709)
++.++++||+ ...+.. -..|.. +.. ..+..++. .+++|+||.+. .+.+.. ..
T Consensus 269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~--~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~ 344 (775)
T KOG1845|consen 269 TGKRDFIVPMRLIKMDYEKSDQLWQGILY--KSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH 344 (775)
T ss_pred ccCCceeEecchhhhhhhcccccccceee--ccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence 5678999998 443321 112222 111 12233333 39999999983 222200 01
Q ss_pred -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCccceeeecccccCCCCcccccCcchhhHHHHHHhhhcC
Q 005212 421 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV 495 (709)
Q Consensus 421 -~~-~~~tGT~III~NLrr~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYlsiLYL~ 495 (709)
+. ...+||.+|+||+++|. +-.+++|+.+ +++|. -...++++.|.++||+.
T Consensus 345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~ 400 (775)
T KOG1845|consen 345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT 400 (775)
T ss_pred hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence 22 25799999999997764 2377888654 24442 02456889999999975
Q ss_pred --CCeEEEEcCeeecccccccccCceeee--cccccc-------eEEEEEEceecccc-ceecceEEEEEcCeeee----
Q 005212 496 --PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE---- 559 (709)
Q Consensus 496 --Prm~I~LnG~kV~~~~I~~~L~~~~v~--k~~i~~-------~~V~It~Gf~~~e~-~~~~~Gi~vY~nnRLIk---- 559 (709)
+++.+.+.|+.+.++.+......+... .+.... .......|+..... .....|+.|||++|||+
T Consensus 401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~ 480 (775)
T KOG1845|consen 401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR 480 (775)
T ss_pred ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence 899999999999999988766554321 111100 01112334443322 22456999999999999
Q ss_pred eEEeeccccccCCCCceEEEEEecCCccccCCCceeeccCCCCCCCchhHHHHHHHHHHHHHHHHhhcccccccc
Q 005212 560 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV 634 (709)
Q Consensus 560 ~yeKVg~q~~~~~~grGVIGVVe~~~l~~p~~~~~~pthnKQdFe~t~~Y~~L~~~L~e~l~eYW~~~~~~~~~~ 634 (709)
++||.++. ....++++++++..++ . +++|++|+|+.+-.-..++....++++.||...++.+.+.
T Consensus 481 ~~~k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~ 545 (775)
T KOG1845|consen 481 PFVKIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA 545 (775)
T ss_pred ceeeecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence 89998874 4568999999999984 3 3589999999999889999999999999998888777654
|
|
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 7e-07
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 261 ELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH---KQ 317
ELV+NS DA AT+++I IE + G ++ I D+G G+ + + + H K
Sbjct: 31 ELVENSLDAGATRIDIDIE-----RGGAK--LIRIRDNGCGIKKDE-LALALARHATSKI 82
Query: 318 PDADDPNRIGRFG 330
DD I G
Sbjct: 83 ASLDDLEAIISLG 95
|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 | Back alignment and structure |
|---|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 | Back alignment and structure |
|---|
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 99.85 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 99.85 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.83 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 99.82 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 99.81 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.81 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.8 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.8 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 99.79 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 99.79 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 99.77 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.76 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.74 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.74 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.62 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.35 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.33 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.28 | |
| 2e61_A | 69 | Zinc finger CW-type PWWP domain protein 1; ZF-CW d | 99.13 | |
| 2l7p_A | 100 | Histone-lysine N-methyltransferase ASHH2; CW-domai | 99.03 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 98.97 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 98.82 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 98.75 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 98.71 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 98.6 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 98.54 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 98.53 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 98.5 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 98.3 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 98.25 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 98.22 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 98.04 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 97.88 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 97.87 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.79 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.66 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.47 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.38 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.38 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 97.37 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.37 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.26 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.24 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.24 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.23 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.21 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.18 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.17 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.15 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.13 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 97.08 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.03 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 96.98 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 96.98 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.62 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 96.61 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 96.22 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 95.68 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 95.39 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 95.39 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 95.09 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 94.09 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 94.05 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 93.0 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 92.62 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 92.56 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 91.3 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 90.05 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 89.68 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 89.14 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 88.69 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 88.36 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 87.61 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 85.42 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 84.49 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 82.97 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 81.31 |
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-22 Score=204.69 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=128.0
Q ss_pred eeecC-HHHHHHhccccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005212 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 298 (709)
Q Consensus 236 ~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (709)
.|.++ .++|..++.+.|++...+|+|||+||.||.++ .+.|.|.. +.+...|+|.||
T Consensus 20 ~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~Dn 93 (239)
T 3nmq_A 20 AFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDT 93 (239)
T ss_dssp ECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeC
Confidence 46666 46777778888888899999999999999652 35666653 234679999999
Q ss_pred CCCCCHHhHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCcc
Q 005212 299 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (709)
Q Consensus 299 G~GMt~eeL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~ 369 (709)
|.||++++|.+.+ .+++|.+ ...+...||+||+||+|++| +|++++|.||+++. .++.|.+ .+...
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~ 168 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGS 168 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCc
Confidence 9999999997754 3544321 12357899999999998755 99999999999764 4677877 34446
Q ss_pred EEEcCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 370 LEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 370 i~VPi~~--~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
+.|.... -..+||+|+|+++++. ++.+++.++. |.|||.|..+||.
T Consensus 169 fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 169 FTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 6664322 2358999999999865 7788888755 9999999998885
|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* | Back alignment and structure |
|---|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 709 | ||||
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 6e-07 | |
| d1b63a2 | 218 | d.122.1.2 (A:-2-216) DNA mismatch repair protein M | 8e-05 |
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA mismatch repair protein PMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 6e-07
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
A+ ELV+NS DA AT +++ ++ G D ++ + D+G G+ ++ +T H
Sbjct: 10 AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62
Query: 318 PDADDPNRIGRFGVGFKTGAM 338
+ + GF+ A+
Sbjct: 63 KIQEFADLTQVETFGFRGEAL 83
|
| >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 99.84 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.47 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.44 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.05 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 98.0 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 97.85 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.76 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.69 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.64 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.62 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 97.62 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.55 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.3 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 97.24 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.8 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 96.56 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 96.4 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 93.34 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 92.24 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 91.8 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 84.6 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 82.42 |
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Heat shock protein 90, HSP90, N-terminal domain domain: HSP90 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.8e-23 Score=203.32 Aligned_cols=165 Identities=24% Similarity=0.314 Sum_probs=124.2
Q ss_pred HHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 242 ~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+.|+.+..+.|+++...|+|||+||.||.. ....|.|.. +.+...|+|.|||.||+.+
T Consensus 12 ~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~------d~~~~~l~I~DnGiGMt~~ 85 (208)
T d1uyla_ 12 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 85 (208)
T ss_dssp HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee------cCCccEEEEEcCCccccHH
Confidence 456666777788888889999999999942 234455542 2457899999999999999
Q ss_pred hHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcc
Q 005212 306 DVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 376 (709)
Q Consensus 306 eL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~ 376 (709)
++.+.+ .+|.|.+ ...+...|||||+||+|++| +++++.|.||+.+.....+.|.. .+...+......
T Consensus 86 el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (208)
T d1uyla_ 86 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTGE 162 (208)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCSS
T ss_pred HHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEecccc
Confidence 998875 4666532 12356899999999999887 99999999998887665555543 333345544444
Q ss_pred cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 377 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 377 ~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
...+||.|+|+++++. ++..++.++. |.|||.|..+||.
T Consensus 163 ~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~ 203 (208)
T d1uyla_ 163 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 203 (208)
T ss_dssp CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred cCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeE
Confidence 4568999999998865 6677777755 9999999998875
|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|