Citrus Sinensis ID: 005238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------
MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA
ccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccccHHHHHHHHccccccc
cccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccEEEEcccccccccccccccEccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHHHHHHccccccc
MDSSRRAVESYWRSRmidgatsdedkvtpvyKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHykgqldplkgDALNKAVRDMAHEAISAIfseenkpapvedlslnkriqgfgntnfempsedkKSFLSEVVGLGSASIKQGLSsfaqgnsmrknengsyrspnlrrsltiendysdryepvelrnetqggydisknvaggswnqdsrvlkedrlngdssasytgskTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFcenndvvvkcsespqsslREKANKVLSLLGeeqagglvsgsersvkaetttvvqmpdlidtadpedhsetnnyatnpsdqnisnlstsstpliddlftdslgtgannseqknaddpfadvlfhtsegkeHVEDLfsgmtvdskpvasgnllaadksgsepfddifgshteilpkqenqknnfndlmagfsinedqlkpegssagvpsesifsdsssnpsqqlsSDALSSLlgsqsagmnanpfpfgtmpynipagmtlnpsiasqpmnysaMGNLFAQQQFLAAMSNLQHignlnvhnsgaanlvggnggsplpdifqpnfptqasmpalnnskkedtrAFDFISDHLASARDSKRVA
MDSSRRAVESywrsrmidgatsdedkvtpvYKLEEICELLRSSHVSIGKEVSDFILKrlehkspvvkqkalrlikysvgksgtdfrREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISaifseenkpapVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLssfaqgnsmrknengsyrspnlrrsltiendysdryepvelrnetqggydisknvaggswnqdsrvlkedrlngdssasytgsktreeKLLETIVtyggvrlqPTRDAIQVFLVEAAKLDALAMSRALEaklqsplwqvRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVkcsespqsslREKANKVLSLLGeeqagglvsgsersvkaetttvvqmpdliDTADPEDHSETnnyatnpsdqnisnlSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISdhlasardskrva
MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPsesifsdsssnpsqqlssdalssllgsqsagMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA
*************************KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI**********************************************************************************************************************************************LLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC******************************************************************************************************************************************************************************************************************************************FGTMPYNIPAGMTL********MNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLV*****************************************************
**********YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI************************************************************************************************************************************************************PTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVV***************************************************************************************************************************************************************************************************************************************************************S*PMNYSAMGNLFAQQQFLAA********************************************************FDFISDHLASAR******
**********YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC**********KANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQL******************************LSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLA*********
*********SYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE*************************************************************************************************************************************TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE******************************ADPEDH************************L*DDLFTDSLGTGANN****NADDPFADVLFHTS********************************************************FNDLMAGFSINEDQLKPEG*SA*VPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANL**GNGGSPLPDIFQPNFPTQAS**********DTRAFDFISDHLASAR******
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MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query706 2.2.26 [Sep-21-2011]
Q9C5H4690 VHS domain-containing pro yes no 0.968 0.991 0.595 0.0
G3V8Y7569 AP-4 complex accessory su yes no 0.165 0.205 0.319 2e-09
Q3U3N6573 AP-4 complex accessory su yes no 0.165 0.204 0.319 2e-09
Q4V832559 AP-4 complex accessory su N/A no 0.216 0.273 0.293 2e-08
Q96N21525 AP-4 complex accessory su yes no 0.182 0.245 0.306 1e-07
>sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1 Back     alignment and function desciption
 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/712 (59%), Positives = 513/712 (72%), Gaps = 28/712 (3%)

Query: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
           MD+SRRAVESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL+
Sbjct: 1   MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60

Query: 61  HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
           +KSP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+
Sbjct: 61  NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120

Query: 121 MAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQ 180
            AHE ISAIFSEEN   P    S+N+RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQ
Sbjct: 121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQ 180

Query: 181 GLSSFAQGNSMRKNENG--SYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVA 238
           G+S+FAQG+  +KNENG  SYR PNL RSLT+EN+   RY+PV+L  +  G Y  SKN  
Sbjct: 181 GISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKD--GNYGTSKNTT 238

Query: 239 GGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEA 298
           GGSW   S    E      S++    SKTREEKLLETIVT GGVRLQPTRDA+ VF++EA
Sbjct: 239 GGSWGHASGEASE-----SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEA 293

Query: 299 AKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC 358
           AK+DA+A+S AL+ KL SP+WQVRMKA+CVLE+ILRKK+DE FSI+ +YF EN D + +C
Sbjct: 294 AKMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRC 353

Query: 359 SESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSET 418
           +ESPQSSLREKANKVLSLL   Q+ GL+S S+ +VK E    V +PDLIDT D +D    
Sbjct: 354 AESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKRE--AAVDLPDLIDTGDSDD--TL 409

Query: 419 NNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEH 478
           NN   N  D   S ++T+   + DD F DS   G ++SE+K  DDPFADV FH +E KE 
Sbjct: 410 NNL--NAIDTG-STVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPNEEKES 466

Query: 479 VEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFS 538
            +DLFSGMTV  K  A G     D        D+FGS  ++  + ++ K N NDLM  FS
Sbjct: 467 ADDLFSGMTVGEKSAAVGGNHVPD------LFDMFGSTAKLEAEPKDAK-NINDLMGSFS 519

Query: 539 INEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANP-FPFGTMP 597
           I+E+    +GSS+    + +F+  S+  S Q   + +  +LGSQ+ G   N   P G MP
Sbjct: 520 IDENNSNQKGSSSSTLPQDLFAMPSTT-SHQAPENPVGGILGSQNPGFIQNTMLPGGVMP 578

Query: 598 YNIPAGMTLNPSIASQPMNYSAMGNLFA-QQQFLAAMSNLQHIGNLNVHNSGAANLVGGN 656
           +N P GM +NP+ ASQP+NY+AM +L A QQQ+L  MSN Q  GNLN   SG    +G +
Sbjct: 579 FNFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTS 638

Query: 657 GG--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA 706
           GG  S LPDIFQPNF  QA    +N SKKEDTRAFDFISDHL SARD+KRV+
Sbjct: 639 GGNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRVS 690

Arabidopsis thaliana (taxid: 3702)
>sp|G3V8Y7|AP4AT_RAT AP-4 complex accessory subunit tepsin OS=Rattus norvegicus GN=Enthd2 PE=2 SV=1 Back     alignment and function description
>sp|Q3U3N6|AP4AT_MOUSE AP-4 complex accessory subunit tepsin OS=Mus musculus GN=Enthd2 PE=1 SV=1 Back     alignment and function description
>sp|Q4V832|AP4AT_XENLA AP-4 complex accessory subunit tepsin OS=Xenopus laevis GN=enthd2 PE=2 SV=2 Back     alignment and function description
>sp|Q96N21|AP4AT_HUMAN AP-4 complex accessory subunit tepsin OS=Homo sapiens GN=ENTHD2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query706
225442541709 PREDICTED: VHS domain-containing protein 0.992 0.988 0.681 0.0
147838869 1694 hypothetical protein VITISV_011432 [Viti 0.992 0.413 0.681 0.0
224054388703 predicted protein [Populus trichocarpa] 0.985 0.990 0.683 0.0
255549890699 conserved hypothetical protein [Ricinus 0.975 0.985 0.664 0.0
356522998701 PREDICTED: VHS domain-containing protein 0.971 0.978 0.642 0.0
356526101700 PREDICTED: VHS domain-containing protein 0.977 0.985 0.641 0.0
357513387709 VHS domain-containing protein [Medicago 0.983 0.978 0.624 0.0
449466679692 PREDICTED: VHS domain-containing protein 0.971 0.991 0.616 0.0
18401075690 VHS domain-containing protein [Arabidops 0.968 0.991 0.595 0.0
297830224694 binding protein [Arabidopsis lyrata subs 0.966 0.982 0.593 0.0
>gi|225442541|ref|XP_002284183.1| PREDICTED: VHS domain-containing protein At3g16270 [Vitis vinifera] gi|297743233|emb|CBI36100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/712 (68%), Positives = 563/712 (79%), Gaps = 11/712 (1%)

Query: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
           MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSI KEVS+FILKRL+
Sbjct: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIVKEVSEFILKRLD 60

Query: 61  HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
           HKSPVV+QKALRLIKY+VGKSG +FRREMQRHS  VRQL HYKGQLD LKGDALNKAVRD
Sbjct: 61  HKSPVVRQKALRLIKYAVGKSGVEFRREMQRHSVAVRQLLHYKGQLDALKGDALNKAVRD 120

Query: 121 MAHEAISAIFS-EENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIK 179
            A E ISAIF+ EENKPAP EDL  N+RIQGFGNTN+EMPSEDKKSFLSEVVGLGS SIK
Sbjct: 121 TAQETISAIFAAEENKPAPSEDL--NRRIQGFGNTNYEMPSEDKKSFLSEVVGLGSTSIK 178

Query: 180 QGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAG 239
           QG+SS  QG+S+RKN+NGSY+SPNLRRSLT E +Y DRYE VE +NETQ  +  SKNV+G
Sbjct: 179 QGISSITQGHSLRKNDNGSYKSPNLRRSLTTEIEYQDRYEGVEHQNETQSSFGSSKNVSG 238

Query: 240 GSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAA 299
           G WNQD R+ K +  NGDSS+S+  SKTREE+LLETIVT GGVRLQPTRDAIQ+FL+EAA
Sbjct: 239 GPWNQDVRITKSETTNGDSSSSFAESKTREERLLETIVTSGGVRLQPTRDAIQIFLIEAA 298

Query: 300 KLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCS 359
           KLDALA+S ALE+KL SPLWQVRMKA+CVL+SILRKKD+E+FS + SYFCEN DVV+KC 
Sbjct: 299 KLDALALSHALESKLHSPLWQVRMKAVCVLDSILRKKDEEQFSTVASYFCENKDVVLKCC 358

Query: 360 ESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETN 419
           ESPQ+SLREKANKVLSLLG EQ G  +S  E+ +K ET   VQMPDLIDT  P+D+    
Sbjct: 359 ESPQASLREKANKVLSLLGGEQTGSTMSPPEKPLKTETVPAVQMPDLIDTGGPDDYYGAE 418

Query: 420 NYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHV 479
           +     SDQ++ NL+TS++PLIDDLF D LG   N  EQKN DDPFADV F + E +E V
Sbjct: 419 DSIKTQSDQSVPNLTTSTSPLIDDLFGDGLGVSENTGEQKNDDDPFADVSFLSGEAREQV 478

Query: 480 EDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSI 539
           +DLFSGMTVD K V +  +  A  S      DIFGS+ E+  +QEN K + NDLMAG SI
Sbjct: 479 DDLFSGMTVDDK-VGANEIPKAATSNEPELFDIFGSNAELPQEQENHKKDVNDLMAGLSI 537

Query: 540 NED--QLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANP-FPFGTM 596
           N +      +G   G  SE++FSDS+S   +Q+S+DAL+   GS++AGMNAN  FP G+M
Sbjct: 538 NGNVSNTTQKGMLPGALSETVFSDSNSYSPKQVSNDALNG-FGSETAGMNANAMFPLGSM 596

Query: 597 PYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVG-- 654
           PYNIP G+  NP+  SQPMNY AMGN FAQQQFLAAMSN Q +GNL   ++G  +  G  
Sbjct: 597 PYNIPPGIMFNPAFPSQPMNYGAMGNFFAQQQFLAAMSNFQQLGNLTSQSAGMGHAGGTM 656

Query: 655 -GNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRV 705
            G   SPLPDIF P+ PTQ+    + +SKKE+T+AFDFISDHLA+ARD KRV
Sbjct: 657 EGGYSSPLPDIFHPHIPTQSPTAVMTSSKKEETKAFDFISDHLAAARDPKRV 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147838869|emb|CAN70334.1| hypothetical protein VITISV_011432 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054388|ref|XP_002298235.1| predicted protein [Populus trichocarpa] gi|222845493|gb|EEE83040.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549890|ref|XP_002515996.1| conserved hypothetical protein [Ricinus communis] gi|223544901|gb|EEF46416.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356522998|ref|XP_003530129.1| PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max] Back     alignment and taxonomy information
>gi|356526101|ref|XP_003531658.1| PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max] Back     alignment and taxonomy information
>gi|357513387|ref|XP_003626982.1| VHS domain-containing protein [Medicago truncatula] gi|355521004|gb|AET01458.1| VHS domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466679|ref|XP_004151053.1| PREDICTED: VHS domain-containing protein At3g16270-like [Cucumis sativus] gi|449526587|ref|XP_004170295.1| PREDICTED: VHS domain-containing protein At3g16270-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18401075|ref|NP_566540.1| VHS domain-containing protein [Arabidopsis thaliana] gi|75168952|sp|Q9C5H4.1|Y3627_ARATH RecName: Full=VHS domain-containing protein At3g16270 gi|13430666|gb|AAK25955.1|AF360245_1 unknown protein [Arabidopsis thaliana] gi|14532838|gb|AAK64101.1| unknown protein [Arabidopsis thaliana] gi|332642271|gb|AEE75792.1| VHS domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830224|ref|XP_002882994.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328834|gb|EFH59253.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query706
TAIR|locus:2094887690 AT3G16270 [Arabidopsis thalian 0.970 0.992 0.568 7.5e-192
RGD|1307410569 Enthd2 "ENTH domain containing 0.161 0.200 0.333 2.7e-08
MGI|MGI:1926027573 Enthd2 "ENTH domain containing 0.161 0.198 0.333 2.8e-08
UNIPROTKB|Q96N21525 ENTHD2 "AP-4 complex accessory 0.303 0.407 0.267 3.4e-07
TAIR|locus:2094887 AT3G16270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
 Identities = 404/711 (56%), Positives = 485/711 (68%)

Query:     1 MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
             MD+SRRAVESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL+
Sbjct:     1 MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60

Query:    61 HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
             +KSP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+
Sbjct:    61 NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120

Query:   121 MAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQ 180
              AHE ISAIFSEEN   P    S+N+RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQ
Sbjct:   121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQ 180

Query:   181 GLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGG 240
             G+S+FAQG+  +KNENGS          ++  +  +      ++    G Y  SKN  GG
Sbjct:   181 GISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKDGNYGTSKNTTGG 240

Query:   241 SWNQDSRVLKEDRLNGDSSASY-TGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAA 299
             SW   S    E      SSAS    SKTREEKLLETIVT GGVRLQPTRDA+ VF++EAA
Sbjct:   241 SWGHASGEASE------SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEAA 294

Query:   300 KLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCS 359
             K+DA+A+S AL+ KL SP+WQVRMKA+CVLE+ILRKK+DE FSI+ +YF EN D + +C+
Sbjct:   295 KMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRCA 354

Query:   360 ESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETN 419
             ESPQSSLREKANKVLSLL   Q+ GL+S S+ +VK E    V +PDLIDT D +D    N
Sbjct:   355 ESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKREAA--VDLPDLIDTGDSDD--TLN 410

Query:   420 NYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHV 479
             N   N  D   S ++T+   + DD F DS   G ++SE+K  DDPFADV FH +E KE  
Sbjct:   411 NL--NAIDTG-STVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPNEEKESA 467

Query:   480 EDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSI 539
             +DLFSGMTV  K  A G     D      FD +FGS  ++  + ++ KN  NDLM  FSI
Sbjct:   468 DDLFSGMTVGEKSAAVGGNHVPDL-----FD-MFGSTAKLEAEPKDAKN-INDLMGSFSI 520

Query:   540 NEDQLKPEGSSAG-VPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNANPFPFGTMPY 598
             +E+    +GSS+  +P                                N    P G MP+
Sbjct:   521 DENNSNQKGSSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTM-LPGGVMPF 579

Query:   599 NIPAGMTLNPSIASQPMNYSAMGNLFAQQQ-FLAAMSNLQHIGNLNVHNSGAANLVGGNG 657
             N P GM +NP+ ASQP+NY+AM +L AQQQ +L  MSN Q  GNLN   SG    +G +G
Sbjct:   580 NFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSG 639

Query:   658 G--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA 706
             G  S LPDIFQPNF  QA    +N SKKEDTRAFDFISDHL SARD+KRV+
Sbjct:   640 GNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRVS 690
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
RGD|1307410 Enthd2 "ENTH domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1926027 Enthd2 "ENTH domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q96N21 ENTHD2 "AP-4 complex accessory subunit tepsin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5H4Y3627_ARATHNo assigned EC number0.59550.96880.9913yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034347001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (709 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query706
cd03572122 cd03572, ENTH_epsin_related, ENTH domain, Epsin Re 3e-48
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 1e-26
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 4e-20
>gnl|CDD|239628 cd03572, ENTH_epsin_related, ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information 
 Score =  165 bits (420), Expect = 3e-48
 Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 12  WRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKAL 71
            R  ++  ATSD+D+ TP Y  EEI +L R S V   +E+ +++LKRL+  SP VK K L
Sbjct: 1   MRRSLLSKATSDDDEPTPGYLYEEIAKLTRKS-VGSCQELLEYLLKRLKRSSPHVKLKVL 59

Query: 72  RLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131
           ++IK+   K  +DF+RE+QR+SA +R+  +YKG  DPLKGD+LN+ VR+ A E I AIFS
Sbjct: 60  KIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119

Query: 132 EEN 134
             +
Sbjct: 120 YSS 122

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 122
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 706
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 100.0
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.93
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.82
KOG2056336 consensus Equilibrative nucleoside transporter pro 99.75
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.58
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.54
KOG2057499 consensus Predicted equilibrative nucleoside trans 99.34
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 98.86
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 98.16
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 98.01
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 97.99
cd03561133 VHS VHS domain family; The VHS domain is present i 97.98
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 97.98
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 97.87
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 97.77
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.66
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 97.66
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 97.51
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 97.46
KOG2199462 consensus Signal transducing adaptor protein STAM/ 97.34
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.2
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 96.79
KOG0251491 consensus Clathrin assembly protein AP180 and rela 96.76
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 96.68
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 96.19
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.91
cd03561133 VHS VHS domain family; The VHS domain is present i 95.62
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.57
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.43
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 94.87
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 94.83
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 93.87
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 90.25
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 89.66
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 89.17
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 88.97
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 88.59
KOG1818634 consensus Membrane trafficking and cell signaling 87.31
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 86.82
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 85.13
KOG2374661 consensus Uncharacterized conserved protein [Funct 80.95
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 80.79
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information 
Probab=100.00  E-value=3e-45  Score=340.04  Aligned_cols=121  Identities=48%  Similarity=0.692  Sum_probs=117.5

Q ss_pred             hhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005238           12 WRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQR   91 (706)
Q Consensus        12 ~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqr   91 (706)
                      |+|+||++|||||++|||||+|+|||++|++|.+ .|++|+|||++||++++||||+||||||||||++|+++|++|+|+
T Consensus         1 ~~~~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~-~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~   79 (122)
T cd03572           1 MRRSLLSKATSDDDEPTPGYLYEEIAKLTRKSVG-SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR   79 (122)
T ss_pred             CcHHHHHHHhcCCCCCCchHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            4789999999999999999999999999999975 589999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005238           92 HSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE  133 (706)
Q Consensus        92 ns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~  133 (706)
                      |+++||+|++|+|+|||++||++|++||++|+||+++||+++
T Consensus        80 ~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          80 NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999965

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query706
1vdy_A140 Nmr Structure Of The Hypothetical Enth-Vhs Domain A 9e-57
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana Length = 140 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (555), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/128 (80%), Positives = 113/128 (88%)
Query: 11  YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKA 70
           YWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL++KSP+VKQKA
Sbjct: 10  YWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKA 69
Query: 71  LRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130
           LRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+ AHE ISAIF
Sbjct: 70  LRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129
Query: 131 SEENKPAP 138
           SEEN   P
Sbjct: 130 SEENGSGP 137

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query706
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 8e-49
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 3e-06
3g2s_A149 C-terminal fragment of sortilin-related receptor; 8e-06
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 4e-05
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 5e-05
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 2e-04
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 2e-04
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 5e-04
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 5e-04
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140 Back     alignment and structure
 Score =  167 bits (423), Expect = 8e-49
 Identities = 107/136 (78%), Positives = 118/136 (86%)

Query: 3   SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHK 62
           SS  + ESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL++K
Sbjct: 2   SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK 61

Query: 63  SPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMA 122
           SP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+ A
Sbjct: 62  SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETA 121

Query: 123 HEAISAIFSEENKPAP 138
           HE ISAIFSEEN   P
Sbjct: 122 HETISAIFSEENGSGP 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query706
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 100.0
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.83
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.82
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.81
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.8
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 98.53
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 98.46
3g2s_A149 C-terminal fragment of sortilin-related receptor; 98.04
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 98.01
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 98.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 97.98
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 97.96
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 97.73
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 97.7
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 97.67
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 97.66
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.62
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.58
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.54
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.42
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 97.39
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.27
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 97.12
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 96.04
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.45
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.2
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.19
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.15
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.05
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 94.91
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 94.6
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 94.23
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.09
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.02
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 90.39
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 89.16
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 87.9
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 85.41
2b4j_C98 PC4 and SFRS1 interacting protein; HIV, integratio 83.63
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 82.47
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 82.15
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 81.73
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 81.06
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 80.22
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=348.37  Aligned_cols=136  Identities=79%  Similarity=1.164  Sum_probs=131.1

Q ss_pred             hhhhhhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC
Q 005238            3 SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG   82 (706)
Q Consensus         3 ~~~~~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs   82 (706)
                      ++|||||+|||.++|++||+||+||||||+|+|||++|+.+++++|+|||+||++||+++++|||+||||||+|||.+|+
T Consensus         2 ~~~~~~~~~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs   81 (140)
T 1vdy_A            2 SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG   81 (140)
T ss_dssp             CCCCSCTHHHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999999999999877889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCCC
Q 005238           83 TDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAP  138 (706)
Q Consensus        83 ~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~~~p~p  138 (706)
                      +.|++|+|+|+++||+|++|+|+|||++|+++|+.||++||||+++||+++..++|
T Consensus        82 ~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A           82 SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999997765443
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 706
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 7e-10
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 4e-06
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-05
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 1e-04
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 2e-04
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (134), Expect = 7e-10
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 16  MIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE--HKSPVVKQKALRL 73
            +  ATS++        + EI +L  +       E+   I KRL    K+     KA+ L
Sbjct: 9   KVREATSNDPWGPSSSLMSEIADLTYNVVAF--SEIMSMIWKRLNDHGKNWRHVYKAMTL 66

Query: 74  IKYSVGKSGTDFRREMQRHSAVVRQL--FHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131
           ++Y +        ++ + +   V+ L  F Y  +     G      VR+ A + ++ +  
Sbjct: 67  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR----DGKDQGVNVREKAKQLVALLRD 122

Query: 132 EEN 134
           E+ 
Sbjct: 123 EDR 125
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query706
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.8
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.24
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.19
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 97.95
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 97.95
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 97.85
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 97.83
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 97.65
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.35
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 95.93
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.89
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.52
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.23
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.63
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 92.11
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 91.75
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.44
d1b3ua_588 Constant regulatory domain of protein phosphatase 86.52
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 86.35
d2b4jc181 PC4 and SFRS1-interacting protein, PSIP1 {Human (H 85.38
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=4.6e-20  Score=171.42  Aligned_cols=120  Identities=19%  Similarity=0.231  Sum_probs=109.1

Q ss_pred             hhhh-hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCc--hHHHHHHHHHHHHhcCChhHH
Q 005238           10 SYWR-SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPV--VKQKALRLIKYSVGKSGTDFR   86 (706)
Q Consensus        10 ~y~~-~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksph--VKlKaLKILkyLc~~Gs~~F~   86 (706)
                      .|+. ..+|.+||++|++|||++.|+||++.|+...  .+.+|+++|.+||.+++.+  |-+|||.||.||+.+|++.|+
T Consensus         2 n~s~~e~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~--~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v   79 (144)
T d1eyha_           2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVV--AFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVS   79 (144)
T ss_dssp             CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHH--HHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChh--hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Confidence            4666 7899999999999999999999999999763  4789999999999977644  339999999999999999999


Q ss_pred             HHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005238           87 REMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE  133 (706)
Q Consensus        87 r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~  133 (706)
                      .+++++.+.|+.+..|...++  +|.+.+..||+.|++++++|++++
T Consensus        80 ~~~~~~~~~i~~l~~f~~~d~--~g~d~g~~VR~kA~~l~~Ll~d~~  124 (144)
T d1eyha_          80 QQCKENMYAVQTLKDFQYVDR--DGKDQGVNVREKAKQLVALLRDED  124 (144)
T ss_dssp             HHHHHTHHHHHGGGGCCCBCT--TSCBCHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHhHHHHHhhhcCcccCc--cccchhHHHHHHHHHHHHHhcCHH
Confidence            999999999999999998755  999999999999999999999843
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure