Citrus Sinensis ID: 005248

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------

MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

ccccccccccccccccccccccEEEEcEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHccccEEEEcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEcccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHcccccccccEEEccccccccccEEEEEccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHcccccccccccccHHccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEHHcccHHHHHcccccccccEEccccccHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEccccccEEEcc

cccccEcccccccccccccccccccccEEEEccHHHHHccccEEEEEEccccccccEEEEccccccccccccccccccccccEEEcccEEEEEccEEccccccEEEEEccccccHcHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcEEcccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEccEEEccccccccEEHHHHHHHHHHcccccEEEEEcccccHHHcHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccEEcccEEEEEcccHccccHHHHHHHHccccccccccHHcccccccHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHccccHHccccccEEccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHcHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEcccccccHccHHHHHHHHHHHHccccccEEEEEEEEEccccccccccccEEcccccEEEEEc

matgtlpasfpglksrdsglgfaksvdfvrvcdfrkfksgrrRFTVirnssnsssdiaelqpasegspllvprqkYCESIHKTVRRKTRTVMVGnvaigsehpirvqtmttndtkdvAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVqknyniplvadihfaPSVALRVAECFDkirvnpgnfadRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRavrigtnhgslSDRImsyygdsprgmVESAFEFARICRKLDFHNFlfsmkasnPVVMVQAYRLLVAEMYVhgwdyplhlgvteagegedgrmkSAIGIGTLLqdglgdtirvslteppekeidpcRRLANLGMRAAELqqgvapfeekhrhyfdfqrrsgqlpiqkegeevdyrgvlhrdgsVLMSVSLDQLKAPELLYKSLAAKLVvgmpfkdlatVDSILlrelpsvddHDARLALKRLVDISmgvitplseqltkplphaMVLVNLQELstgaykllpegTRLVVslrgdesyeELEILKDIdatmilhdlpfnedkIGRVQAARRLFEYLSennlnfpvihhiqfpngihrddlvigagtNVGALLVDglgdgllleapgqdfdflRDTSFNllqgcrmrntkteyvscpscgrtlFDLQEISAEIREktshlpgvSIAIMGCivngpgemadadfgyvggapgkidllw

matgtlpasfpglksrdsglgfaksvdfvrvcdfrkfksgrrrftvirnssnsssdiaelqpasegspllvprqKYCESihktvrrktrtvmvgnvaigsehpirvqtmttnDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAvrigtnhgslsdrIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSlteppekeidpCRRLANLGMRAAELQQGVAPFEEKHRHYFDFqrrsgqlpiqkegEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLrelpsvddhDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRektshlpgvSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNvgallvdglgdglllEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

*******************LGFAKSVDFVRVCDFRKFKSGRRRFTVI***********************VPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE****RMKSAIGIGTLLQDGLGDTIRVSL**********CRRLANLGMRAAELQQGVAPFEEKHRHYFDFQ*************EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKI****

***********GLKSRDSGLGFAKSVDFVR********************************************KYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNS*************SEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

*********************FAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		706	2.2.26 [Sep-21-2011]
F4K0E8		741	4-hydroxy-3-methylbut-2-e	yes	no	0.995	0.948	0.870	0.0
Q6K8J4		744	4-hydroxy-3-methylbut-2-e	yes	no	0.995	0.944	0.833	0.0
Q6MD85		654	4-hydroxy-3-methylbut-2-e	yes	no	0.859	0.928	0.519	0.0
Q04YW2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.828	0.882	0.426	1e-128
Q04UL2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.828	0.882	0.426	1e-127
Q8F1H5		663	4-hydroxy-3-methylbut-2-e	yes	no	0.855	0.911	0.416	1e-127
Q72TR2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.855	0.911	0.415	1e-127
Q9PKY3		601	4-hydroxy-3-methylbut-2-e	yes	no	0.779	0.915	0.414	1e-122
Q64N34		626	4-hydroxy-3-methylbut-2-e	yes	no	0.808	0.912	0.418	1e-116
Q5L7W2		626	4-hydroxy-3-methylbut-2-e	yes	no	0.808	0.912	0.419	1e-116

>sp\|F4K0E8\|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1	Back alignment and function desciption

 Score = 1291 bits (3340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/704 (87%), Positives = 663/704 (94%), Gaps = 1/704 (0%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG LPA   G+K  DS +GF KS++ VR+CD R  +S RRR +VIRNS N  SD+AEL
Sbjct: 1   MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct: 60  QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           V+EVMRIAD+GAD+VRITVQGK+EADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct: 120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct: 360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD  ARLALKRL+D+SMGV
Sbjct: 420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct: 480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT  G 
Sbjct: 540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 660
           LLVDGLGDG++LEAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA
Sbjct: 600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 659

Query: 661 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 704
           EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG+PGKIDL
Sbjct: 660 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDL 703

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Is essential for chloroplast development and required for the salicylic acid (SA)-mediated disease resistance to biotrophic pathogens.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 1

>sp\|Q6K8J4\|ISPG_ORYSJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPG PE=2 SV=1	Back alignment and function description

>sp\|Q6MD85\|ISPG_PARUW 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q04YW2\|ISPG_LEPBL 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q04UL2\|ISPG_LEPBJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q8F1H5\|ISPG_LEPIN 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q72TR2\|ISPG_LEPIC 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q9PKY3\|ISPG_CHLMU 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q64N34\|ISPG_BACFR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain YCH46) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q5L7W2\|ISPG_BACFN 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		706
164605000		740	4-hydroxy-3-methylbut-2-en-1-yl diphosph	0.995	0.95	0.910	0.0
255578864		716	4-hydroxy-3-methylbut-2-en-1-yl diphosph	0.997	0.983	0.893	0.0
224106738		741	predicted protein [Populus trichocarpa]	0.995	0.948	0.884	0.0
225435309		740	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.995	0.95	0.884	0.0
402770461		741	hydroxymethylbutenyl diphosphate synthas	0.995	0.948	0.886	0.0
147798613		740	hypothetical protein VITISV_005654 [Viti	0.995	0.95	0.882	0.0
297793619		741	hypothetical protein ARALYDRAFT_919295 [	0.995	0.948	0.873	0.0
356543460		741	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.995	0.948	0.873	0.0
312282499		742	unnamed protein product [Thellungiella h	0.997	0.948	0.867	0.0
356550161		742	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.995	0.947	0.869	0.0

>gi\|164605000\|dbj\|BAF98296.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]	Back alignment and taxonomy information

 Score = 1340 bits (3468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/704 (91%), Positives = 679/704 (96%), Gaps = 1/704 (0%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG +PASF GLK+RDS LGF KS+DFVRVCD ++ KSGR++ ++IRNS N   ++ EL
Sbjct: 1   MATGAVPASFTGLKTRDSSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNS-NPGPEMVEL 59

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIRVQTMTT+DTKDVAGT
Sbjct: 60  QPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSEHPIRVQTMTTSDTKDVAGT 119

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           VE+VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE
Sbjct: 120 VEQVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 179

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL
Sbjct: 300 YVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 359

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLGMRA+ +QQGVAPFEEKHRHYFDFQRRSGQLP+QKEGEEVDYRGVLHRDGSVLMSV 
Sbjct: 360 ANLGMRASTVQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVC 419

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELP V+D+DARLALKRL+DISMGV
Sbjct: 420 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPPVEDNDARLALKRLIDISMGV 479

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AMVLVNL+ELSTGA+KLLPEGTRLVVS RGDE YEELEILKDIDAT
Sbjct: 480 IVPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPEGTRLVVSARGDEPYEELEILKDIDAT 539

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           MILHDLPF EDKIGRV AARRLFE+LS+N LNFPVIHHIQFPN IHRDDLVIGAGTN GA
Sbjct: 540 MILHDLPFTEDKIGRVHAARRLFEFLSDNALNFPVIHHIQFPNAIHRDDLVIGAGTNAGA 599

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 660
           LLVDGLGDG+LLEAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQ+ISA
Sbjct: 600 LLVDGLGDGILLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQDISA 659

Query: 661 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 704
           EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL
Sbjct: 660 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 703

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255578864\|ref\|XP_002530286.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative [Ricinus communis] gi\|223530184\|gb\|EEF32093.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224106738\|ref\|XP_002314268.1\| predicted protein [Populus trichocarpa] gi\|222850676\|gb\|EEE88223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225435309\|ref\|XP_002285130.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Vitis vinifera] gi\|297746253\|emb\|CBI16309.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|402770461\|gb\|AFQ98370.1\| hydroxymethylbutenyl diphosphate synthase [Camellia sinensis]	Back alignment and taxonomy information

>gi\|147798613\|emb\|CAN72185.1\| hypothetical protein VITISV_005654 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297793619\|ref\|XP_002864694.1\| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata] gi\|297310529\|gb\|EFH40953.1\| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356543460\|ref\|XP_003540178.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|312282499\|dbj\|BAJ34115.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|356550161\|ref\|XP_003543457.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		706
TAIR\|locus:2175851		741	HDS "4-hydroxy-3-methylbut-2-e	0.995	0.948	0.855	0.0
GENEDB_PFALCIPARUM\|PF10_0221		824	PF10_0221 "GcpE protein" [Plas	0.617	0.529	0.409	8.9e-113
UNIPROTKB\|Q8IJH7		824	PF10_0221 "GcpE protein" [Plas	0.617	0.529	0.409	8.9e-113
UNIPROTKB\|P73672		403	ispG "4-hydroxy-3-methylbut-2-	0.430	0.754	0.480	4.8e-95
UNIPROTKB\|Q8DK70		402	ispG "4-hydroxy-3-methylbut-2-	0.415	0.728	0.474	2.1e-94
UNIPROTKB\|Q81LV7		367	ispG "4-hydroxy-3-methylbut-2-	0.188	0.362	0.424	3.5e-58
TIGR_CMR\|BA_4502		367	BA_4502 "gcpE protein" [Bacill	0.188	0.362	0.424	3.5e-58
TIGR_CMR\|CHY_1776		355	CHY_1776 "1-hydroxy-2-methyl-2	0.196	0.391	0.431	3.1e-55
UNIPROTKB\|O33350		387	ispG "4-hydroxy-3-methylbut-2-	0.215	0.392	0.438	1.4e-54
TIGR_CMR\|GSU_1459		353	GSU_1459 "1-hydroxy-2-methyl-2	0.164	0.328	0.467	1.2e-51

TAIR\|locus:2175851 HDS "4-hydroxy-3-methylbut-2-enyl diphosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3154 (1115.3 bits), Expect = 0., P = 0.
 Identities = 602/704 (85%), Positives = 650/704 (92%)

Query:     1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
             MATG LPA   G+K  DS +GF KS++ VR+CD R  +S RRR +VIRNS N  SD+AEL
Sbjct:     1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59

Query:    61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
             QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct:    60 QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119

Query:   121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
             V+EVMRIAD+GAD+VRITVQGK+EADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct:   120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179

Query:   181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
             CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct:   180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query:   241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
             GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct:   240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query:   301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
             YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct:   300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359

Query:   361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
             ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct:   360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419

Query:   421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
             LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD  ARLALKRL+D+SMGV
Sbjct:   420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479

Query:   481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
             I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct:   480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539

Query:   541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNXXX 600
             MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT    
Sbjct:   540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599

Query:   601 XXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 660
                         EAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA
Sbjct:   600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 659

Query:   661 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 704
             EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG+PGKIDL
Sbjct:   660 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDL 703

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISS

GO:0016114 "terpenoid biosynthetic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IEA;IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA;TAS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GENEDB_PFALCIPARUM\|PF10_0221 PF10_0221 "GcpE protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IJH7 PF10_0221 "GcpE protein" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|P73672 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8DK70 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Thermosynechococcus elongatus BP-1 (taxid:197221)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81LV7 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4502 BA_4502 "gcpE protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1776 CHY_1776 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|O33350 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1459 GSU_1459 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5L7W2	ISPG_BACFN	1, ., 1, 7, ., 7, ., 1	0.4196	0.8087	0.9121	yes	no
Q04UL2	ISPG_LEPBJ	1, ., 1, 7, ., 7, ., 1	0.4268	0.8286	0.8823	yes	no
A6LGR5	ISPG_PARD8	1, ., 1, 7, ., 7, ., 1	0.4064	0.8101	0.9361	yes	no
Q64N34	ISPG_BACFR	1, ., 1, 7, ., 7, ., 1	0.4180	0.8087	0.9121	yes	no
Q04YW2	ISPG_LEPBL	1, ., 1, 7, ., 7, ., 1	0.4268	0.8286	0.8823	yes	no
Q6K8J4	ISPG_ORYSJ	1, ., 1, 7, ., 7, ., 1	0.8333	0.9957	0.9448	yes	no
F4K0E8	ISPG_ARATH	1, ., 1, 7, ., 7, ., 1	0.8707	0.9957	0.9487	yes	no
Q6MD85	ISPG_PARUW	1, ., 1, 7, ., 7, ., 1	0.5195	0.8597	0.9281	yes	no
Q72TR2	ISPG_LEPIC	1, ., 1, 7, ., 7, ., 1	0.4153	0.8555	0.9110	yes	no
Q8F1H5	ISPG_LEPIN	1, ., 1, 7, ., 7, ., 1	0.4169	0.8555	0.9110	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.17.7	0.691
4th Layer	1.17.7.1	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		706
PLN02925		733	PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-y	0.0
PRK02048		611	PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-y	1e-167
pfam04551		345	pfam04551, GcpE, GcpE protein	1e-128
PRK00694		606	PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-y	1e-122
COG0821		361	COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-	1e-108
PRK00366		360	PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl di	1e-107
TIGR00612		346	TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-but	1e-102
PRK00694		606	PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-y	4e-43
pfam04551		345	pfam04551, GcpE, GcpE protein	2e-38
TIGR00612		346	TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-but	2e-29
COG0821		361	COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-	2e-27
PRK00366		360	PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl di	2e-23

>gnl\|CDD\|178513 PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

 Score = 1448 bits (3750), Expect = 0.0
 Identities = 615/704 (87%), Positives = 659/704 (93%), Gaps = 8/704 (1%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG LPA   GLK+ DS LGF KS+DFVR+CD R         +VIRNS N+  D+ EL
Sbjct: 1   MATGVLPAPLSGLKTSDSKLGFGKSMDFVRICDVR-------SVSVIRNS-NTGPDLVEL 52

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT DTKDV  T
Sbjct: 53  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEAT 112

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           V++VMRIAD+GAD+VRITVQGK+EADACFEIKN+LVQK YNIPLVADIHFAPSVALRVAE
Sbjct: 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAE 172

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIEEVF+PLVEKCKKYGRA+RIGTNH
Sbjct: 173 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPVVMVQAYRLLVAEM
Sbjct: 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEM 292

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 293 YVLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 352

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLGM+AA LQQGVAPFEEKHR YFDFQRR+GQLP+QKEGEEVDYR VLHRDGSVLMSVS
Sbjct: 353 ANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEGEEVDYRNVLHRDGSVLMSVS 412

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLY+SLAAKLVVGMPFKDLATVDSILLRELP VDD +ARLALKRL+D+SMGV
Sbjct: 413 LDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AM LVNL+ELS+GA+KLLPEGTRL V+LRGDE YEELEILKD+DAT
Sbjct: 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDAT 532

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           M+LHD+PF EDK+ RV AARRLFEYLS N+LNFPVIHHIQFP GIHRDDLVI AG+  GA
Sbjct: 533 MLLHDVPFTEDKVSRVHAARRLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGA 592

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 660
           LLVDGLGDG+LLEAP QDFDFLR+TSF LLQGCRMRNTKTEYVSCPSCGRTLFDLQE+SA
Sbjct: 593 LLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVSA 652

Query: 661 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 704
           EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL
Sbjct: 653 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 696

Length = 733

>gnl\|CDD\|179361 PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|218143 pfam04551, GcpE, GcpE protein	Back alignment and domain information

>gnl\|CDD\|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>gnl\|CDD\|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|218143 pfam04551, GcpE, GcpE protein	Back alignment and domain information

>gnl\|CDD\|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>gnl\|CDD\|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		706
PLN02925		733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
PRK02048		611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
PRK00694		606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
PF04551		359	GcpE: GcpE protein; InterPro: IPR004588 This prote	100.0
TIGR00612		346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	100.0
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	100.0
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	100.0
PRK00694		606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.77
TIGR00612		346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	99.75
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	99.75
PRK02048		611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.75
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	99.72
PF04551		359	GcpE: GcpE protein; InterPro: IPR004588 This prote	99.64
PLN02925		733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.58
PRK04165		450	acetyl-CoA decarbonylase/synthase complex subunit	98.42
cd00739		257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	97.59
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	97.43
TIGR00284		499	dihydropteroate synthase-related protein. This pro	97.32
cd00423		258	Pterin_binding Pterin binding enzymes. This family	97.21
PRK04452		319	acetyl-CoA decarbonylase/synthase complex subunit	96.98
TIGR00381		389	cdhD CO dehydrogenase/acetyl-CoA synthase, delta s	96.92
PRK07535		261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	96.79
TIGR02435		390	CobG precorrin-3B synthase. An iron-sulfur protein	96.51
PRK13504		569	sulfite reductase subunit beta; Provisional	96.38
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.13
PRK11613		282	folP dihydropteroate synthase; Provisional	96.09
TIGR02435		390	CobG precorrin-3B synthase. An iron-sulfur protein	95.92
TIGR02374		785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.89
PRK14989		847	nitrite reductase subunit NirD; Provisional	95.88
PLN00178		623	sulfite reductase	95.86
TIGR02042		577	sir ferredoxin-sulfite reductase. monomeric enzyme	95.85
TIGR02082		1178	metH 5-methyltetrahydrofolate--homocysteine methyl	95.75
PRK12595		360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	95.64
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	95.61
COG0155		510	CysI Sulfite reductase, beta subunit (hemoprotein)	95.48
PF00809		210	Pterin_bind: Pterin binding enzyme This Prosite en	95.46
TIGR01361		260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	95.35
PRK09490		1229	metH B12-dependent methionine synthase; Provisiona	95.33
PRK09566		513	nirA ferredoxin-nitrite reductase; Reviewed	95.17
TIGR02912		314	sulfite_red_C sulfite reductase, subunit C. Member	95.05
PRK13753		279	dihydropteroate synthase; Provisional	94.94
PRK02412		253	aroD 3-dehydroquinate dehydratase; Provisional	94.94
PF01077		157	NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom	94.66
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	94.64
TIGR02041		541	CysI sulfite reductase (NADPH) hemoprotein, beta-c	94.48
cd07948		262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	94.38
COG2221		317	DsrA Dissimilatory sulfite reductase (desulfovirid	94.19
cd00740		252	MeTr MeTr subgroup of pterin binding enzymes. This	94.04
PRK07028		430	bifunctional hexulose-6-phosphate synthase/ribonuc	93.9
cd07940		268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	93.82
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.67
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	93.64
cd00958		235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	93.62
TIGR00542		279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	93.52
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.43
TIGR02066		341	dsrB sulfite reductase, dissimilatory-type beta su	93.35
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	93.33
PRK09567		593	nirA ferredoxin-nitrite reductase; Reviewed	93.18
PRK15129		321	L-Ala-D/L-Glu epimerase; Provisional	93.09
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	93.08
PRK00979		308	tetrahydromethanopterin S-methyltransferase subuni	92.76
PRK04180		293	pyridoxal biosynthesis lyase PdxS; Provisional	92.75
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.56
PRK13210		284	putative L-xylulose 5-phosphate 3-epimerase; Revie	92.32
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	92.28
PRK09566		513	nirA ferredoxin-nitrite reductase; Reviewed	92.15
TIGR02631		382	xylA_Arthro xylose isomerase, Arthrobacter type. T	91.79
COG1410		842	MetH Methionine synthase I, cobalamin-binding doma	91.65
TIGR01502		408	B_methylAsp_ase methylaspartate ammonia-lyase. Thi	91.55
TIGR02064		402	dsrA sulfite reductase, dissimilatory-type alpha s	91.43
PLN02431		587	ferredoxin--nitrite reductase	91.27
TIGR03234		254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	91.2
TIGR02090		363	LEU1_arch isopropylmalate/citramalate/homocitrate	91.17
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	90.78
PLN02746		347	hydroxymethylglutaryl-CoA lyase	90.57
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	90.41
PRK09997		258	hydroxypyruvate isomerase; Provisional	90.26
PRK13504		569	sulfite reductase subunit beta; Provisional	90.16
cd03316		357	MR_like Mandelate racemase (MR)-like subfamily of	89.68
cd07941		273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	89.55
cd03315		265	MLE_like Muconate lactonizing enzyme (MLE) like su	89.34
cd00502		225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	89.18
PRK13209		283	L-xylulose 5-phosphate 3-epimerase; Reviewed	89.11
cd04727		283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	88.68
cd07944		266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	88.66
TIGR02660		365	nifV_homocitr homocitrate synthase NifV. This fami	88.5
PLN02431		587	ferredoxin--nitrite reductase	88.29
cd00019		279	AP2Ec AP endonuclease family 2; These endonuclease	88.18
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	88.12
PRK12457		281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	87.96
PRK09856		275	fructoselysine 3-epimerase; Provisional	87.63
PRK02412		253	aroD 3-dehydroquinate dehydratase; Provisional	87.56
cd00381		325	IMPDH IMPDH: The catalytic domain of the inosine m	87.4
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	87.31
PRK13523		337	NADPH dehydrogenase NamA; Provisional	87.28
cd04734		343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	87.2
TIGR01093		228	aroD 3-dehydroquinate dehydratase, type I. Type II	86.91
TIGR01093		228	aroD 3-dehydroquinate dehydratase, type I. Type II	86.78
PRK06843		404	inosine 5-monophosphate dehydrogenase; Validated	86.02
PRK09989		258	hypothetical protein; Provisional	85.87
cd04733		338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	85.57
PF04131		192	NanE: Putative N-acetylmannosamine-6-phosphate epi	85.43
cd07947		279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	85.25
PLN02274		505	inosine-5'-monophosphate dehydrogenase	85.06
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	84.91
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	84.42
cd03316		357	MR_like Mandelate racemase (MR)-like subfamily of	84.05
cd04747		361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	83.28
PRK09389		488	(R)-citramalate synthase; Provisional	83.16
TIGR00343		287	pyridoxal 5'-phosphate synthase, synthase subunit	82.68
cd03319		316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	82.59
cd02932		336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	82.32
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	82.24
PF03599		386	CdhD: CO dehydrogenase/acetyl-CoA synthase delta s	81.39
PRK05198		264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	81.35
PRK01261		229	aroD 3-dehydroquinate dehydratase; Provisional	81.26
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	80.62
cd02930		353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	80.51
TIGR03128		206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	80.5
PRK09249		453	coproporphyrinogen III oxidase; Provisional	80.22
PF00478		352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	80.2
PF01487		224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	80.19
PRK12344		524	putative alpha-isopropylmalate/homocitrate synthas	80.03

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

Probab=100.00  E-value=1.2e-200  Score=1649.80  Aligned_cols=698  Identities=88%  Similarity=1.356  Sum_probs=649.8

Q ss_pred             CCCCCCCcccCCcccccCCCcccccccceeecceeeeccccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 005248            1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI   80 (706)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~   80 (706)
                      ||+|.+|+++.+++.+..+++|.++++|.+.       +++++.++.++. ++.+++.++++++++++++.|.++||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~   72 (733)
T PLN02925          1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI   72 (733)
T ss_pred             CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence            8999999999999999999999999999665       333455555553 66788999999999999999999999999


Q ss_pred             cccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc
Q 005248           81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY  160 (706)
Q Consensus        81 ~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~  160 (706)
                      |+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||||||++++|+||++|+++|+++|+
T Consensus        73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~  152 (733)
T PLN02925         73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY  152 (733)
T ss_pred             hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC
Q 005248          161 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH  240 (706)
Q Consensus       161 ~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~  240 (706)
                      ++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||+||+++|.+||++||++|+||||||||
T Consensus       153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~  232 (733)
T PLN02925        153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH  232 (733)
T ss_pred             CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248          241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE  320 (706)
Q Consensus       241 GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~  320 (706)
                      ||||+|+|+||||||+|||||||||+++||++||+|||||||||||++||+|||+|+++|+++|++|||||||||||+++
T Consensus       233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e  312 (733)
T PLN02925        233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE  312 (733)
T ss_pred             cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccccC
Q 005248          321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG  400 (706)
Q Consensus       321 ~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~~g  400 (706)
                      +|+||||+|||+||.||||||||||||+||++|||||++|+++..+...++..++.|++..+||++|.||.+..+...+|
T Consensus       313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg  392 (733)
T PLN02925        313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG  392 (733)
T ss_pred             CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence            99999999999999999999999999999999999999999977664333334677999999999999999998888888


Q ss_pred             CccccccccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHHhhccccc
Q 005248          401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV  480 (706)
Q Consensus       401 ~~~~~~~v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~~~~~~~~  480 (706)
                      +.+|++.++|++++|+..+++++|+.++++|+.++++..+|+++++..++|+||++++|+..+.+.+.++++++|+++|+
T Consensus       393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~  472 (733)
T PLN02925        393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV  472 (733)
T ss_pred             ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence            88888899999999999999999999999999999999899999999999999999988877767788899999999998


Q ss_pred             cccccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHH
Q 005248          481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR  560 (706)
Q Consensus       481 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r  560 (706)
                      +.|.++....|+++.+.++++.++....+...++..+|+++.++++++|.+++++.++++|+++..|....+.++++++|
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R  552 (733)
T PLN02925        473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR  552 (733)
T ss_pred             ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence            76644443445555555777776654444555567799999999999999999999999999988222238899999999


Q ss_pred             HHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCc
Q 005248          561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT  640 (706)
Q Consensus       561 ~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kt  640 (706)
                      ++++.|+++++++|+|||..|++....++.+|+||+++|+||+|||||||||+.++.+.++...+||+|||++|+|++||
T Consensus       553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kt  632 (733)
T PLN02925        553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKT  632 (733)
T ss_pred             HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCC
Confidence            99999999999999999999998657889999999999999999999999999998777777789999999999999999


Q ss_pred             eEeccCCCCcccccHHHHHHHHHHHhCCCCCCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248          641 EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW  706 (706)
Q Consensus       641 e~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~  706 (706)
                      |||||||||||+||||+++++|+++|+||||+||||||||||||||||||||||||+|||||+||+
T Consensus       633 e~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYv  698 (733)
T PLN02925        633 EYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV  698 (733)
T ss_pred             eEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999996

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli	Back alignment and domain information

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli	Back alignment and domain information

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional	Back alignment and domain information

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>TIGR00284 dihydropteroate synthase-related protein	Back alignment and domain information

>cd00423 Pterin_binding Pterin binding enzymes	Back alignment and domain information

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional	Back alignment and domain information

>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit	Back alignment and domain information

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated	Back alignment and domain information

>TIGR02435 CobG precorrin-3B synthase	Back alignment and domain information

>PRK13504 sulfite reductase subunit beta; Provisional	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK11613 folP dihydropteroate synthase; Provisional	Back alignment and domain information

>TIGR02435 CobG precorrin-3B synthase	Back alignment and domain information

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit	Back alignment and domain information

>PRK14989 nitrite reductase subunit NirD; Provisional	Back alignment and domain information

>PLN00178 sulfite reductase	Back alignment and domain information

>TIGR02042 sir ferredoxin-sulfite reductase	Back alignment and domain information

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase	Back alignment and domain information

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder	Back alignment and domain information

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK09490 metH B12-dependent methionine synthase; Provisional	Back alignment and domain information

>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed	Back alignment and domain information

>TIGR02912 sulfite_red_C sulfite reductase, subunit C	Back alignment and domain information

>PRK13753 dihydropteroate synthase; Provisional	Back alignment and domain information

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component	Back alignment and domain information

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>cd00740 MeTr MeTr subgroup of pterin binding enzymes	Back alignment and domain information

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated	Back alignment and domain information

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea	Back alignment and domain information

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed	Back alignment and domain information

>PRK15129 L-Ala-D/L-Glu epimerase; Provisional	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional	Back alignment and domain information

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed	Back alignment and domain information

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type	Back alignment and domain information

>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase	Back alignment and domain information

>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit	Back alignment and domain information

>PLN02431 ferredoxin--nitrite reductase	Back alignment and domain information

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase	Back alignment and domain information

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>PRK09997 hydroxypyruvate isomerase; Provisional	Back alignment and domain information

>PRK13504 sulfite reductase subunit beta; Provisional	Back alignment and domain information

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily	Back alignment and domain information

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily	Back alignment and domain information

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase	Back alignment and domain information

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa	Back alignment and domain information

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>TIGR02660 nifV_homocitr homocitrate synthase NifV	Back alignment and domain information

>PLN02431 ferredoxin--nitrite reductase	Back alignment and domain information

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>PRK09856 fructoselysine 3-epimerase; Provisional	Back alignment and domain information

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>PRK13523 NADPH dehydrogenase NamA; Provisional	Back alignment and domain information

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3	Back alignment and domain information

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I	Back alignment and domain information

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I	Back alignment and domain information

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK09989 hypothetical protein; Provisional	Back alignment and domain information

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2	Back alignment and domain information

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []	Back alignment and domain information

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily	Back alignment and domain information

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5	Back alignment and domain information

>PRK09389 (R)-citramalate synthase; Provisional	Back alignment and domain information

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1	Back alignment and domain information

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	Back alignment and domain information

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes	Back alignment and domain information

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	Back alignment and domain information

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase	Back alignment and domain information

>PRK09249 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase	Back alignment and domain information

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4	Back alignment and domain information

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		706
3noy_A		366	Crystal Structure Of Ispg (Gcpe) Length = 366		2e-41
3noy_A		366	Crystal Structure Of Ispg (Gcpe) Length = 366		6e-10
2y0f_A		406	Structure Of Gcpe (Ispg) From Thermus Thermophilus		3e-34
2y0f_A		406	Structure Of Gcpe (Ispg) From Thermus Thermophilus		2e-07

>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe) Length = 366

Back alignment and structure

Iteration: 1

Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/285 (38%), Positives = 156/285 (54%), Gaps = 35/285 (12%) Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144 +RKTR + VGNV IG + PI VQ+MT+ T DV T+ ++ R+ + G ++VR+ V K + Sbjct: 13 KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED 72 Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVA-LRVAECFDKIRVNPGNFADRRAQFEQLE 203 +A EI K +P++ADIHFAPS A L + + IR+NPGN E +E Sbjct: 73 VEALEEI-----VKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVE 127 Query: 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESA 262 K+ G AVRIG N GSL ++ YG S + ESA Sbjct: 128 E----------------------AKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESA 165 Query: 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322 ++ K F N+ S+K S+ + V+A L+ AE D PLH+G+TEAG G G Sbjct: 166 LRWSEKFEKWGFTNYKVSIKGSDVLQNVRA-NLIFAERT----DVPLHIGITEAGMGTKG 220 Query: 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 366 +KS++GIG LL G+GDT+RVSLT+ P E++ L +LG+R Sbjct: 221 IIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLR 265

PyMOL of 3noy

>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe) Length = 366

Back alignment and structure

>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27 Length = 406

Back alignment and structure

>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27 Length = 406

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		706
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	1e-103
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	7e-25
2y0f_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	7e-96
2y0f_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	7e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Length = 366	Back alignment and structure

 Score =  317 bits (816), Expect = e-103
 Identities = 110/285 (38%), Positives = 157/285 (55%), Gaps = 35/285 (12%)

Query: 85  RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
           +RKTR + VGNV IG + PI VQ+MT+  T DV  T+ ++ R+ + G ++VR+ V  K +
Sbjct: 13  KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED 72

Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLE 203
            +A  EI      K   +P++ADIHFAPS A    E     IR+NPGN            
Sbjct: 73  VEALEEIV-----KKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKE-------- 119

Query: 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESA 262
                     + + E+    VE+ K+ G AVRIG N GSL   ++  YG  S   + ESA
Sbjct: 120 ----------EIVREI----VEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESA 165

Query: 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322
             ++    K  F N+  S+K S+ +  V+A  +  AE      D PLH+G+TEAG G  G
Sbjct: 166 LRWSEKFEKWGFTNYKVSIKGSDVLQNVRANLIF-AERT----DVPLHIGITEAGMGTKG 220

Query: 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 366
            +KS++GIG LL  G+GDT+RVSLT+ P  E++     L +LG+R
Sbjct: 221 IIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLR 265

PyMOL of 3noy

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Length = 366	Back alignment and structure

>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non-mevalonate PATH; 2.50A {Thermus thermophilus} Length = 406	Back alignment and structure

>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non-mevalonate PATH; 2.50A {Thermus thermophilus} Length = 406	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		706
4g9p_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	100.0
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	100.0
4g9p_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	99.67
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	99.62
1zco_A		262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	99.37
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	98.58
4g38_A		570	SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote	97.93
1tx2_A		297	DHPS, dihydropteroate synthase; folate biosynthesi	97.69
1aop_A		497	Sirhp, sulfite reductase hemoprotein; oxidoreducta	97.64
4djd_C		446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	97.55
1eye_A		280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	97.5
1zj8_A		566	Probable ferredoxin-dependent nitrite reductase N;	97.46
2h9a_B		310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	97.29
2h9a_A		445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	97.28
2vp8_A		318	Dihydropteroate synthase 2; RV1207 transferase, fo	97.27
2yci_X		271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	97.23
3k13_A		300	5-methyltetrahydrofolate-homocysteine methyltrans;	97.15
2y5s_A		294	DHPS, dihydropteroate synthase; transferase, folat	97.08
1aj0_A		282	DHPS, dihydropteroate synthase; antibiotic, resist	97.02
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	96.98
1f6y_A		262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.86
4h3d_A		258	3-dehydroquinate dehydratase; structural genomics,	96.75
2dqw_A		294	Dihydropteroate synthase; dimer, structural genomi	96.7
1vs1_A		276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	96.49
3tr9_A		314	Dihydropteroate synthase; biosynthesis of cofactor	96.44
3o1n_A		276	3-dehydroquinate dehydratase; structural genomics,	96.3
4hb7_A		270	Dihydropteroate synthase; transferase; 1.95A {Stap	96.25
2yr1_A		257	3-dehydroquinate dehydratase; amino acid biosynthe	96.23
4djd_D		323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	96.16
1vr6_A		350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	96.0
3cqj_A		295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	95.9
1y0e_A		223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.9
2vef_A		314	Dihydropteroate synthase; antibiotic resistance, t	95.39
3dx5_A		286	Uncharacterized protein ASBF; beta-alpha barrel, p	95.38
1nvm_A		345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	95.07
3mcm_A		442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	94.73
1k77_A		260	EC1530, hypothetical protein YGBM; TIM barrel, str	94.62
2wqp_A		349	Polysialic acid capsule biosynthesis protein SIAC;	94.31
3qc0_A		275	Sugar isomerase; TIM barrel, structural genomics,	94.16
2rdx_A		379	Mandelate racemase/muconate lactonizing enzyme, P;	93.54
1xla_A		394	D-xylose isomerase; isomerase(intramolecular oxido	93.48
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.35
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	93.15
3kws_A		287	Putative sugar isomerase; structural genomics, joi	93.14
3p3b_A		392	Mandelate racemase/muconate lactonizing protein; e	93.07
1yxy_A		234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	92.94
2pgw_A		384	Muconate cycloisomerase; enolase superfamily, octa	92.93
1i60_A		278	IOLI protein; beta barrel, structural genomics, PS	92.9
1wa3_A		205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	92.85
1vli_A		385	Spore coat polysaccharide biosynthesis protein SP;	92.72
3fs2_A		298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	92.52
2qgy_A		391	Enolase from the environmental genome shotgun sequ	92.45
2v82_A		212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	92.45
3or1_A		437	Sulfite reductase alpha; dissimilatory sulfite red	92.43
2akj_A		608	Ferredoxin--nitrite reductase, chloroplast; X-RAY	92.26
3ble_A		337	Citramalate synthase from leptospira interrogans;	92.16
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	92.0
2qkf_A		280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	91.96
1rvk_A		382	Isomerase/lactonizing enzyme; enolase superfamily,	91.77
3obe_A		305	Sugar phosphate isomerase/epimerase; structural ge	91.43
3i4k_A		383	Muconate lactonizing enzyme; structural genomics,	91.25
3mqt_A		394	Mandelate racemase/muconate lactonizing protein; P	91.21
3mkc_A		394	Racemase; metabolic process, PSI2, NYSGXRC, struct	91.16
1ps9_A		671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	91.06
3ngf_A		269	AP endonuclease, family 2; structural genomics, se	90.97
3qxb_A		316	Putative xylose isomerase; structural genomics, jo	90.97
2cw6_A		298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	90.74
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	90.62
2qw5_A		335	Xylose isomerase-like TIM barrel; putative sugar p	90.47
1vhc_A		224	Putative KHG/KDPG aldolase; structural genomics, u	90.42
1mdl_A		359	Mandelate racemase; isomerase, mandelate pathway,	90.38
1kcz_A		413	Beta-methylaspartase; beta zigzag, alpha/beta-barr	90.33
2q02_A		272	Putative cytoplasmic protein; structural genomics,	90.25
3b0g_A		591	NII3, nitrite reductase; siroheme, Fe4S4 binding p	90.21
1kko_A		413	3-methylaspartate ammonia-lyase; enolase superfami	90.18
1muw_A		386	Xylose isomerase; atomic resolution, disorder; 0.8	90.17
1o60_A		292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	90.15
2hzg_A		401	Mandelate racemase/muconate lactonizing enzyme/EN	89.87
3ozy_A		389	Putative mandelate racemase; beta-alpha barrel, en	89.84
4e4u_A		412	Mandalate racemase/muconate lactonizing enzyme; ma	89.81
3sjn_A		374	Mandelate racemase/muconate lactonizing protein; e	89.75
2ovl_A		371	Putative racemase; structural genomics, PSI-2, pro	89.7
3ivs_A		423	Homocitrate synthase, mitochondrial; TIM barrel, m	89.39
3mm5_A		418	Sulfite reductase, dissimilatory-type subunit ALP;	89.2
3gd6_A		391	Muconate cycloisomerase; structural genomics, NYSG	89.17
2nql_A		388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	88.96
3vnd_A		267	TSA, tryptophan synthase alpha chain; psychrophili	88.82
4e5t_A		404	Mandelate racemase / muconate lactonizing enzyme,	88.79
3q45_A		368	Mandelate racemase/muconate lactonizing enzyme FA	88.73
3ewb_X		293	2-isopropylmalate synthase; LEUA, structural genom	88.61
3tva_A		290	Xylose isomerase domain protein TIM barrel; struct	88.61
1nu5_A		370	Chloromuconate cycloisomerase; enzyme, dehalogenat	88.6
2zad_A		345	Muconate cycloisomerase; muconate lactonizing enzy	88.57
3go2_A		409	Putative L-alanine-DL-glutamate epimerase; structu	88.45
2gdq_A		382	YITF; mandelate racemase/muconate lactonizing enzy	88.44
2gl5_A		410	Putative dehydratase protein; structural genomics,	88.36
2ps2_A		371	Putative mandelate racemase/muconate lactonizing e	88.2
2poz_A		392	Putative dehydratase; octamer, structural genomics	88.11
2qul_A		290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	88.03
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	88.02
3vni_A		294	Xylose isomerase domain protein TIM barrel; D-psic	87.88
4dwd_A		393	Mandelate racemase/muconate lactonizing enzyme, C	87.87
3bjs_A		428	Mandelate racemase/muconate lactonizing enzyme; en	87.87
1chr_A		370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	87.86
3p6l_A		262	Sugar phosphate isomerase/epimerase; TIM barrel, s	87.78
3v3w_A		424	Starvation sensing protein RSPA; enolase, enzyme f	87.7
1z41_A		338	YQJM, probable NADH-dependent flavin oxidoreductas	87.67
3o07_A		291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	87.49
2qde_A		397	Mandelate racemase/muconate lactonizing enzyme FA	87.47
1wbh_A		214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	87.47
1vzw_A		244	Phosphoribosyl isomerase A; histidine biosynthesis	87.45
3jva_A		354	Dipeptide epimerase; enolase superfamily, isomeras	87.25
1sjd_A		368	N-acylamino acid racemase; lyase, isomerase; HET:	87.23
3eeg_A		325	2-isopropylmalate synthase; 11106D, beta barrel, P	87.2
1mxs_A		225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	87.16
2fym_A		431	Enolase; RNA degradosome, enolase, lyase; 1.60A {E	86.94
2hk0_A		309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	86.93
2zvr_A		290	Uncharacterized protein TM_0416; hyperthermophIle,	86.92
3eez_A		378	Putative mandelate racemase/muconate lactonizing e	86.82
2og9_A		393	Mandelate racemase/muconate lactonizing enzyme; NY	86.56
3rcy_A		433	Mandelate racemase/muconate lactonizing enzyme-LI	86.54
3tml_A		288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	86.42
2o56_A		407	Putative mandelate racemase; dehydratase, structur	86.38
1ydo_A		307	HMG-COA lyase; TIM-barrel protein, structural geno	86.3
3rr1_A		405	GALD, putative D-galactonate dehydratase; enolase,	86.21
1tkk_A		366	Similar to chloromuconate cycloisomerase; epimeras	85.95
4dxk_A		400	Mandelate racemase / muconate lactonizing enzyme p	85.87
4e38_A		232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	85.78
3mwc_A		400	Mandelate racemase/muconate lactonizing protein; e	85.68
3r4e_A		418	Mandelate racemase/muconate lactonizing enzyme; en	85.58
3stp_A		412	Galactonate dehydratase, putative; PSI biology, st	85.58
2bmb_A		545	Folic acid synthesis protein FOL1; folate biosynth	85.55
3l23_A		303	Sugar phosphate isomerase/epimerase; structural ge	85.34
2p8b_A		369	Mandelate racemase/muconate lactonizing enzyme fam	85.3
1tzz_A		392	Hypothetical protein L1841; structural genomics, m	85.17
3vcn_A		425	Mannonate dehydratase; enolase, magnesium binding	84.96
3cny_A		301	Inositol catabolism protein IOLE; xylose isomerase	84.95
1bxb_A		387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	84.93
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	84.87
2pp0_A		398	L-talarate/galactarate dehydratase; enolase superf	84.7
3inp_A		246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	84.68
1xim_A		393	D-xylose isomerase; isomerase(intramolecular oxido	84.51
3ktc_A		333	Xylose isomerase; putative sugar isomerase, struct	84.5
3jva_A		354	Dipeptide epimerase; enolase superfamily, isomeras	84.38
3fcp_A		381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	84.29
3mm5_B		366	Sulfite reductase, dissimilatory-type subunit BET;	84.25
3dip_A		410	Enolase; structural genomics, isomerase, PSI-2, pr	84.19
3khj_A		361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	83.63
3ro6_B		356	Putative chloromuconate cycloisomerase; TIM barrel	83.55
2yw3_A		207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	83.52
1r0m_A		375	N-acylamino acid racemase; isomerase; 1.30A {Deino	83.43
2ztj_A		382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	83.41
3lmz_A		257	Putative sugar isomerase; structural genomics, joi	83.36
2ox4_A		403	Putative mandelate racemase; enolase, dehydratase,	82.96
1jpd_X		324	L-Ala-D/L-Glu epimerase; enolase superfamily, muco	82.81
2qq6_A		410	Mandelate racemase/muconate lactonizing enzyme- li	82.74
3vav_A		275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	82.68
3or1_B		386	Sulfite reductase beta; dissimilatory sulfite redu	82.64
2qdd_A		378	Mandelate racemase/muconate lactonizing enzyme; en	82.59
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	82.42
3tqp_A		428	Enolase; energy metabolism, lyase; 2.20A {Coxiella	82.35
1rd5_A		262	Tryptophan synthase alpha chain, chloroplast; hydr	82.32
3ddm_A		392	Putative mandelate racemase/muconate lactonizing e	82.19
3l5l_A		363	Xenobiotic reductase A; TIM barrel, oxidoreductase	82.08
3o1n_A		276	3-dehydroquinate dehydratase; structural genomics,	82.05
1r30_A		369	Biotin synthase; SAM radical protein, TIM barrel,	81.86
3dgb_A		382	Muconate cycloisomerase; muconate lactonizing enzy	81.85
3i6e_A		385	Muconate cycloisomerase I; structural genomics, NY	81.83
3my9_A		377	Muconate cycloisomerase; structural genomics, PSI-	81.7
4dye_A		398	Isomerase; enolase family protein, EFI, enzym func	81.6
4hpn_A		378	Putative uncharacterized protein; enolase, enzyme	81.24
2rdx_A		379	Mandelate racemase/muconate lactonizing enzyme, P;	80.81
3qtp_A		441	Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent	80.68
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	80.58
3sz8_A		285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	80.5
2zad_A		345	Muconate cycloisomerase; muconate lactonizing enzy	80.42

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*	Back alignment and structure

Probab=100.00  E-value=4.2e-128  Score=1025.99  Aligned_cols=248  Identities=40%  Similarity=0.633  Sum_probs=237.4

Q ss_pred             ccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcC
Q 005248           82 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN  161 (706)
Q Consensus        82 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~  161 (706)
                      ++.||+||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++|||||||||||++++|+||++|+++|++.|++
T Consensus         2 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~   81 (406)
T 4g9p_A            2 EGMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVE   81 (406)
T ss_dssp             CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCccCeeEEEcCEeeCCCCceeeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeccCCCHHHHHHH----hhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248          162 IPLVADIHFAPSVALRV----AECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG  237 (706)
Q Consensus       162 iPLVADIHF~~~~Al~a----~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG  237 (706)
                      +||||||||||++|+.|    ++++|||||||||||+++++                  +++|+++|++||++|+|||||
T Consensus        82 vPLVADiHF~~~~al~a~~~~a~~~dkiRINPGNig~~~k~------------------~e~~~~vv~~ak~~~~pIRIG  143 (406)
T 4g9p_A           82 VPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHK------------------DEHFAEMIRIAMDLGKPVRIG  143 (406)
T ss_dssp             CCEEEECCSSHHHHHHHCHHHHHHCSEEEECTTSSCSTHHH------------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEeeecccHHHHHHHHHHHHhHHhhcccCccccCccccH------------------HHHHHHHHHHHHHccCCceec
Confidence            99999999999999954    44699999999999987654                  679999999999999999999


Q ss_pred             cCCCCCchhHHHhhCC------C--------hHHHHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHhhh
Q 005248          238 TNHGSLSDRIMSYYGD------S--------PRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMY  301 (706)
Q Consensus       238 vN~GSL~~~il~rygd------t--------~eamVeSAle~~~i~e~~~f--~~iviS~KaSnv~~~i~ayrlla~~~~  301 (706)
                      ||||||++++|++|||      +        +||||||||+|+++|+++||  +||+||||+|||++||+|||+|+++  
T Consensus       144 VN~GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eamVeSAl~~~~~~~~~~f~~~~iviS~KaSdv~~~i~aYr~la~~--  221 (406)
T 4g9p_A          144 ANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARR--  221 (406)
T ss_dssp             EEGGGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEECSSHHHHHHHHHHHHHH--
T ss_pred             cccccccHHHHHHhhcccccCCCccchhhhHHHHHHHHHHHHHHHHHHcCCChhheEEEeecCCHHHHHHHHHHHHHh--
Confidence            9999999999999975      2        38999999999999999888  7899999999999999999999999  


Q ss_pred             cCCCCCcccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcc
Q 005248          302 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK  352 (706)
Q Consensus       302 ~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~  352 (706)
                         +||||||||||||++.+|+||||+|||+||+||||||||||||+||++
T Consensus       222 ---~dyPLHLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~dP~e  269 (406)
T 4g9p_A          222 ---TQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKE  269 (406)
T ss_dssp             ---CCSCBEECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCCTTS
T ss_pred             ---CCCCceeeeecCCCcccceechHHHHHHHHhccCchhEEeeccCCCCc
Confidence               899999999999999999999999999999999999999999998865

PyMOL of 4g9p

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*	Back alignment and structure

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*	Back alignment and structure

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...	Back alignment and structure

>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*	Back alignment and structure

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*	Back alignment and structure

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1	Back alignment and structure

>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*	Back alignment and structure

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*	Back alignment and structure

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*	Back alignment and structure

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}	Back alignment and structure

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*	Back alignment and structure

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*	Back alignment and structure

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A	Back alignment and structure

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A	Back alignment and structure

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*	Back alignment and structure

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*	Back alignment and structure

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*	Back alignment and structure

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}	Back alignment and structure

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}	Back alignment and structure

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*	Back alignment and structure

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*	Back alignment and structure

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}	Back alignment and structure

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*	Back alignment and structure

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*	Back alignment and structure

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A	Back alignment and structure

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5	Back alignment and structure

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*	Back alignment and structure

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}	Back alignment and structure

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5	Back alignment and structure

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*	Back alignment and structure

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5	Back alignment and structure

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A	Back alignment and structure

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A	Back alignment and structure

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}	Back alignment and structure

>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*	Back alignment and structure

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5	Back alignment and structure

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}	Back alignment and structure

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A	Back alignment and structure

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A	Back alignment and structure

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6	Back alignment and structure

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}	Back alignment and structure

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}	Back alignment and structure

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*	Back alignment and structure

>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*	Back alignment and structure

>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1	Back alignment and structure

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*	Back alignment and structure

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}	Back alignment and structure

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}	Back alignment and structure

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}	Back alignment and structure

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A	Back alignment and structure

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1	Back alignment and structure

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0	Back alignment and structure

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}	Back alignment and structure

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}	Back alignment and structure

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1	Back alignment and structure

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A	Back alignment and structure

>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A	Back alignment and structure

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4	Back alignment and structure

>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*	Back alignment and structure

>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*	Back alignment and structure

>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...	Back alignment and structure

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A	Back alignment and structure

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}	Back alignment and structure

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*	Back alignment and structure

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}	Back alignment and structure

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}	Back alignment and structure

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A	Back alignment and structure

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*	Back alignment and structure

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*	Back alignment and structure

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*	Back alignment and structure

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A	Back alignment and structure

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}	Back alignment and structure

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}	Back alignment and structure

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A	Back alignment and structure

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}	Back alignment and structure

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A	Back alignment and structure

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*	Back alignment and structure

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A	Back alignment and structure

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*	Back alignment and structure

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}	Back alignment and structure

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}	Back alignment and structure

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*	Back alignment and structure

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*	Back alignment and structure

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}	Back alignment and structure

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A	Back alignment and structure

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}	Back alignment and structure

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A	Back alignment and structure

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*	Back alignment and structure

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A	Back alignment and structure

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}	Back alignment and structure

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*	Back alignment and structure

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A	Back alignment and structure

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*	Back alignment and structure

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*	Back alignment and structure

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1	Back alignment and structure

>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A	Back alignment and structure

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*	Back alignment and structure

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}	Back alignment and structure

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}	Back alignment and structure

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*	Back alignment and structure

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A	Back alignment and structure

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A	Back alignment and structure

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}	Back alignment and structure

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}	Back alignment and structure

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A	Back alignment and structure

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A	Back alignment and structure

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A	Back alignment and structure

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}	Back alignment and structure

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}	Back alignment and structure

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*	Back alignment and structure

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A	Back alignment and structure

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}	Back alignment and structure

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}	Back alignment and structure

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*	Back alignment and structure

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*	Back alignment and structure

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A	Back alignment and structure

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}	Back alignment and structure

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*	Back alignment and structure

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}	Back alignment and structure

>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*	Back alignment and structure

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}	Back alignment and structure

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*	Back alignment and structure

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*	Back alignment and structure

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}	Back alignment and structure

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}	Back alignment and structure

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A	Back alignment and structure

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A	Back alignment and structure

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A	Back alignment and structure

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*	Back alignment and structure

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}	Back alignment and structure

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}	Back alignment and structure

>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}	Back alignment and structure

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A	Back alignment and structure

>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*	Back alignment and structure

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}	Back alignment and structure

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A	Back alignment and structure

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}	Back alignment and structure

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*	Back alignment and structure

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*	Back alignment and structure

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1	Back alignment and structure

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A	Back alignment and structure

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A	Back alignment and structure

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}	Back alignment and structure

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A	Back alignment and structure

>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A	Back alignment and structure

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}	Back alignment and structure

>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*	Back alignment and structure

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		706
d3bofa1		260	Cobalamin-dependent methionine synthase MetH, C-te	96.89
d1gqna_		252	Type I 3-dehydroquinate dehydratase {Salmonella ty	96.76
d1f6ya_		262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	96.55
d1aopa4		145	Sulfite reductase hemoprotein (SiRHP), domains 2 a	96.13
d1vr6a1		338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	95.55
d1tx2a_		273	Dihydropteroate synthetase {Bacillus anthracis [Ta	95.29
d1i60a_		278	Hypothetical protein IolI {Bacillus subtilis [TaxI	95.16
d3c7ba3		185	Dissimilatory sulfite reductase subunit alpha, Dsr	95.15
d1kkoa1		251	beta-Methylaspartase {Citrobacter amalonaticus [Ta	94.64
d2akja4		171	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	94.62
d2v4jb3		177	Dissimilatory sulfite reductase subunit beta, DsrB	94.53
d2v4ja3		189	Dissimilatory sulfite reductase subunit alpha, Dsr	94.12
d1ajza_		282	Dihydropteroate synthetase {Escherichia coli [TaxI	93.83
d1zj8a3		149	Sulfite reductase NirA {Mycobacterium tuberculosis	93.56
d1kcza1		253	beta-Methylaspartase {Clostridium tetanomorphum [T	93.54
d2akja3		126	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	93.14
d2chra1		244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	91.72
d2g0wa1		275	Hypothetical protein Lmo2234 {Listeria monocytogen	90.97
d1jpdx1		208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	90.94
d1eyea_		270	Dihydropteroate synthetase {Mycobacterium tubercul	90.69
d1sjda1		242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	89.6
d1nu5a1		243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	89.42
d1gqna_		252	Type I 3-dehydroquinate dehydratase {Salmonella ty	89.14
d1r0ma1		243	N-acylamino acid racemase {Deinococcus radiodurans	88.93
d3c7bb3		179	Dissimilatory sulfite reductase subunit beta, DsrB	88.92
d1ad1a_		264	Dihydropteroate synthetase {Staphylococcus aureus	86.98
d1muca1		242	Muconate-lactonizing enzyme {Pseudomonas putida [T	86.86
d2q02a1		271	Putative cytoplasmic protein STM4435 {Salmonella t	84.98
d1zj8a4		165	Sulfite reductase NirA {Mycobacterium tuberculosis	84.37
d1vlia2		295	Spore coat polysaccharide biosynthesis protein Sps	83.24
d1z41a1		337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	82.96
d1jpma1		234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	82.7
d2flia1		217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	82.66

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.012  Score=57.89  Aligned_cols=170  Identities=16%  Similarity=0.231  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCc-eeeCCC
Q 005248          114 TKDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPG  190 (706)
Q Consensus       114 T~Dv~atv~Qi~~L~~aGceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~k-iRINPG  190 (706)
                      -.|.+..+++.++..++|++++=|-  +|+.++.+.+.++.+.+.. -+++||.=|- +++.++.+|++.+.. ==||==
T Consensus        36 ~~d~d~~~~~A~~qv~~GA~iLDIn~~~~~~~e~~~m~~li~~l~~-~~d~PlsIDT-~~~~v~eaaLk~~~G~~iINsi  113 (260)
T d3bofa1          36 KGNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPY-VSNVPLSLDI-QNVDLTERALRAYPGRSLFNSA  113 (260)
T ss_dssp             TTCSHHHHHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHH-HTCSCEEEEC-CCHHHHHHHHHHCSSCCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeecCCchhhhHHHHHHHHHHHHh-cCCCCccccC-CCHHHHHHHHHHhcCcceEeec
Confidence            3678999999999999999999886  4677888888888887765 4789999996 679998888886432 113311


Q ss_pred             CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248          191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR  270 (706)
Q Consensus       191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e  270 (706)
                      |.   .                    ++++..++..||+||.++=.-......+        .+++.-++-|.+.++.++
T Consensus       114 s~---e--------------------~~~~~~~~~l~~~yga~vI~l~~d~g~p--------~~~~er~~~~~~~~~~~~  162 (260)
T d3bofa1         114 KV---D--------------------EEELEMKINLLKKYGGTLIVLLMGKDVP--------KSFEERKEYFEKALKILE  162 (260)
T ss_dssp             ES---C--------------------HHHHHHHHHHHHHHCCEEEEESCSSSCC--------CSHHHHHHHHHHHHHHHH
T ss_pred             cc---c--------------------cchHHHHHHHHHhcCCCEEEEecCCccc--------ccHHHHHHHHHHHHHHHH
Confidence            11   1                    2366778999999999985543211111        466777788888889999


Q ss_pred             HCCC-CcEEEE-----EecCCh-hHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCC
Q 005248          271 KLDF-HNFLFS-----MKASNP-VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG  322 (706)
Q Consensus       271 ~~~f-~~iviS-----~KaSnv-~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G  322 (706)
                      +.|+ ++|+|-     +|+.+- ..++++-+.+.+      ..+|.-+|+.==.-|...
T Consensus       163 ~~g~~e~ii~DPli~~~~t~~~~~~~l~~i~~i~~------~g~~~~~GlSN~SFGlp~  215 (260)
T d3bofa1         163 RHDFSDRVIFDPGVLPLGAEGKPVEVLKTIEFISS------KGFNTTVGLSNLSFGLPD  215 (260)
T ss_dssp             HTTCGGGEEEECCCCCGGGTCCHHHHHHHHHHHHH------TTCCBCCBGGGGGTTCTT
T ss_pred             hcCCcHhheecccceeccchHHHHHHHHHHHHHHh------cCcceeeccccccCCCcc
Confidence            9999 788876     566443 356777777754      379999999865555544

PyMOL of d3bofa1

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}	Back information, alignment and structure

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}	Back information, alignment and structure

>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}	Back information, alignment and structure

>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}	Back information, alignment and structure

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}	Back information, alignment and structure

>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}	Back information, alignment and structure

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}	Back information, alignment and structure

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}	Back information, alignment and structure

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure