Citrus Sinensis ID: 005253
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LKF9 | 739 | Cleavage and polyadenylat | yes | no | 0.994 | 0.949 | 0.768 | 0.0 | |
| Q652P4 | 738 | Cleavage and polyadenylat | yes | no | 0.994 | 0.951 | 0.708 | 0.0 | |
| Q9V3D6 | 756 | Probable cleavage and pol | yes | no | 0.957 | 0.894 | 0.358 | 1e-136 | |
| O35218 | 782 | Cleavage and polyadenylat | yes | no | 0.957 | 0.864 | 0.341 | 1e-132 | |
| Q10568 | 782 | Cleavage and polyadenylat | yes | no | 0.949 | 0.856 | 0.345 | 1e-132 | |
| Q9P2I0 | 782 | Cleavage and polyadenylat | yes | no | 0.951 | 0.859 | 0.345 | 1e-131 | |
| Q9W799 | 783 | Cleavage and polyadenylat | N/A | no | 0.961 | 0.867 | 0.349 | 1e-129 | |
| Q55BS1 | 784 | Cleavage and polyadenylat | yes | no | 0.970 | 0.873 | 0.318 | 1e-111 | |
| O17403 | 843 | Probable cleavage and pol | yes | no | 0.849 | 0.711 | 0.314 | 9e-90 | |
| A8XUS3 | 842 | Probable cleavage and pol | N/A | no | 0.849 | 0.712 | 0.308 | 2e-88 |
| >sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/743 (76%), Positives = 640/743 (86%), Gaps = 41/743 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
G D+N S +PM+ID + DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELT---- 533
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 534 -----------------------------VLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 564
VLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 565 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 624
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 625 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 683
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 684 IEGPLCEDYYKIRAYLYSQFYLL 706
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
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CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2 OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1 | Back alignment and function description |
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| >sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2 OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1 | Back alignment and function description |
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| >sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1 | Back alignment and function description |
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| >sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| 255553723 | 740 | cleavage and polyadenylation specificity | 0.997 | 0.951 | 0.830 | 0.0 | |
| 449446027 | 738 | PREDICTED: cleavage and polyadenylation | 0.995 | 0.952 | 0.812 | 0.0 | |
| 224121102 | 740 | predicted protein [Populus trichocarpa] | 0.998 | 0.952 | 0.809 | 0.0 | |
| 356530856 | 736 | PREDICTED: cleavage and polyadenylation | 0.992 | 0.952 | 0.813 | 0.0 | |
| 356530858 | 742 | PREDICTED: cleavage and polyadenylation | 0.997 | 0.948 | 0.807 | 0.0 | |
| 356559788 | 738 | PREDICTED: cleavage and polyadenylation | 0.997 | 0.953 | 0.804 | 0.0 | |
| 225464483 | 740 | PREDICTED: cleavage and polyadenylation | 0.998 | 0.952 | 0.804 | 0.0 | |
| 356559790 | 743 | PREDICTED: cleavage and polyadenylation | 0.995 | 0.946 | 0.797 | 0.0 | |
| 297808393 | 739 | CPSF100 [Arabidopsis lyrata subsp. lyrat | 0.994 | 0.949 | 0.775 | 0.0 | |
| 15237845 | 739 | cleavage and polyadenylation specificity | 0.994 | 0.949 | 0.768 | 0.0 |
| >gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/742 (83%), Positives = 656/742 (88%), Gaps = 38/742 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL+GV+NENPLSYL+SID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+ VSEFDLF+LDDID
Sbjct: 61 SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFSLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ++TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVLESFVRPAVLITDAYNAL NQPPRQQR E + I KTL AGGNVLLPVD+A
Sbjct: 181 RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +WA LNYPI+FLTYVSSSTIDYVKSFLEWM DSI KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQFWAHRLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LLKHVTLLINK+ELDNAP+ PK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQFG
Sbjct: 301 LLKHVTLLINKNELDNAPNVPKVVLASMASLEAGFSHDIFVEWAADVKNLVLFTERGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQADPPPKAVKVTMSRRVPLVG+ELIAYEEEQ RLKKEE L AS++KEEE+K S
Sbjct: 361 TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELNASMIKEEEAKVSH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
GPD+NLS DPM+IDA+N NAS D V G YRDIL DGFVPPSTSVAPMFPFYEN +EW
Sbjct: 421 GPDSNLS-DPMIIDASNNNASLDAVGSQGTGYRDILFDGFVPPSTSVAPMFPFYENTTEW 479
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELT---- 533
DDFGEVINPDDY+IKD+DMDQ MH+GGD DGK DEGSAS ILD KPSKVVS+ELT
Sbjct: 480 DDFGEVINPDDYVIKDDDMDQ-PMHVGGDIDGKFDEGSASWILDTKPSKVVSSELTVQVK 538
Query: 534 -----------------------------VLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 564
VLVHGSAE+TEHLKQHCLKHVCPHVY PQIE
Sbjct: 539 CSLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPHVYAPQIE 598
Query: 565 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 624
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD+EIAWVDAEVGKTE+ LSLLPIST APP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDFEIAWVDAEVGKTESDALSLLPISTSAPP 658
Query: 625 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 684
HKSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGGGSGTQQIVI
Sbjct: 659 HKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNINQKGGGSGTQQIVI 718
Query: 685 EGPLCEDYYKIRAYLYSQFYLL 706
EGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 EGPLCEDYYKIREYLYSQFYLL 740
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa] gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Vitis vinifera] gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit; Short=AtCPSF100; Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING PHENOTYPE 5 gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| TAIR|locus:2172843 | 739 | CPSF100 "cleavage and polyaden | 0.753 | 0.719 | 0.797 | 3.4e-310 | |
| UNIPROTKB|Q9P2I0 | 782 | CPSF2 "Cleavage and polyadenyl | 0.730 | 0.659 | 0.411 | 8.2e-134 | |
| UNIPROTKB|Q10568 | 782 | CPSF2 "Cleavage and polyadenyl | 0.730 | 0.659 | 0.411 | 1.3e-133 | |
| UNIPROTKB|E2R496 | 782 | CPSF2 "Uncharacterized protein | 0.730 | 0.659 | 0.407 | 1.7e-133 | |
| RGD|1309687 | 782 | Cpsf2 "cleavage and polyadenyl | 0.730 | 0.659 | 0.407 | 2.7e-133 | |
| UNIPROTKB|Q9W799 | 783 | cpsf2 "Cleavage and polyadenyl | 0.729 | 0.657 | 0.403 | 2.7e-133 | |
| ZFIN|ZDB-GENE-040718-79 | 790 | cpsf2 "cleavage and polyadenyl | 0.735 | 0.656 | 0.401 | 3.5e-133 | |
| UNIPROTKB|F1NMN0 | 782 | CPSF2 "Uncharacterized protein | 0.685 | 0.618 | 0.420 | 5.7e-133 | |
| FB|FBgn0027873 | 756 | Cpsf100 "Cleavage and polyaden | 0.737 | 0.689 | 0.391 | 1.1e-120 | |
| DICTYBASE|DDB_G0270392 | 784 | cpsf2 "cleavage and polyadenyl | 0.583 | 0.525 | 0.427 | 5.7e-120 |
| TAIR|locus:2172843 CPSF100 "cleavage and polyadenylation specificity factor 100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2242 (794.3 bits), Expect = 3.4e-310, Sum P(2) = 3.4e-310
Identities = 430/539 (79%), Positives = 487/539 (90%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 419 GPDNNLSGDPMVIDXXXXXXSADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
G D+N S +PM+ID DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVLV 536
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTV 535
|
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| UNIPROTKB|Q9P2I0 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q10568 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R496 CPSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|1309687 Cpsf2 "cleavage and polyadenylation specific factor 2, 100kDa" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9W799 cpsf2 "Cleavage and polyadenylation specificity factor subunit 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040718-79 cpsf2 "cleavage and polyadenylation specific factor 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NMN0 CPSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| FB|FBgn0027873 Cpsf100 "Cleavage and polyadenylation specificity factor 100" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0270392 cpsf2 "cleavage and polyadenylation specificity factor 100 kDa subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P2I0 | CPSF2_HUMAN | No assigned EC number | 0.3455 | 0.9518 | 0.8593 | yes | no |
| Q9V3D6 | CPSF2_DROME | No assigned EC number | 0.3587 | 0.9575 | 0.8941 | yes | no |
| Q55BS1 | CPSF2_DICDI | No assigned EC number | 0.3180 | 0.9702 | 0.8737 | yes | no |
| O35218 | CPSF2_MOUSE | No assigned EC number | 0.3411 | 0.9575 | 0.8644 | yes | no |
| Q10568 | CPSF2_BOVIN | No assigned EC number | 0.3459 | 0.9490 | 0.8567 | yes | no |
| Q9LKF9 | CPSF2_ARATH | No assigned EC number | 0.7685 | 0.9943 | 0.9499 | yes | no |
| Q652P4 | CPSF2_ORYSJ | No assigned EC number | 0.7088 | 0.9943 | 0.9512 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 706 | |||
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 1e-54 | |
| smart01027 | 126 | smart01027, Beta-Casp, Beta-Casp domain | 3e-29 | |
| pfam13299 | 152 | pfam13299, CPSF100_C, Cleavage and polyadenylation | 3e-25 | |
| pfam10996 | 124 | pfam10996, Beta-Casp, Beta-Casp domain | 3e-22 | |
| COG1782 | 637 | COG1782, COG1782, Predicted metal-dependent RNase, | 4e-22 | |
| TIGR03675 | 630 | TIGR03675, arCOG00543, arCOG00543 universal archae | 4e-17 | |
| pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase sup | 2e-08 | |
| smart00849 | 177 | smart00849, Lactamase_B, Metallo-beta-lactamase su | 9e-07 | |
| COG0491 | 252 | COG0491, GloB, Zn-dependent hydrolases, including | 3e-05 | |
| COG0595 | 555 | COG0595, COG0595, mRNA degradation ribonucleases J | 0.002 |
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 1e-54
Identities = 101/351 (28%), Positives = 152/351 (43%), Gaps = 19/351 (5%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G L+DCG DPS +PL +DAVLL+H H+GALPY + + G
Sbjct: 16 CVLLETGGTRILLDCGLFPG-DPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLV-RNG 73
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
PV++T P L + + L + + ++ +D++ + L Y + +
Sbjct: 74 FEGPVYATPPTAALLKV-LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEV-- 130
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
G+ V + AGH+LG + DG ++Y D RRK++ LNG L VLI
Sbjct: 131 --GGVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPP--CIDVLIV 186
Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
++ P R + E F +++ L GG VL+P + GR ELLLIL + +
Sbjct: 187 ESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--D 244
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318
YPIY ++ + Y K + + K E+ + V N G
Sbjct: 245 YPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR------FRFVESRRNSMREGID-KG 297
Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
P +VLA+ L+ G S SD KN VL GTL R+L
Sbjct: 298 PAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT 348
|
Length = 427 |
| >gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|222032 pfam13299, CPSF100_C, Cleavage and polyadenylation factor 2 C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 100.0 | |
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| PF13299 | 161 | CPSF100_C: Cleavage and polyadenylation factor 2 C | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 100.0 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 99.94 | |
| PF10996 | 126 | Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T | 99.91 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.7 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.66 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.65 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.59 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 99.56 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 99.56 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.54 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 99.53 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 99.52 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 99.51 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.5 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 99.46 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 99.46 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.4 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 99.36 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 99.36 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 99.28 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 99.27 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 99.27 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.24 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 99.24 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 99.23 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 99.22 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 99.16 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 99.07 | |
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 99.02 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 99.0 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 98.96 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 98.81 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 98.8 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 98.79 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 98.79 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 98.79 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 98.76 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 98.71 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 98.67 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 98.56 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 98.28 | |
| PF14597 | 199 | Lactamase_B_5: Metallo-beta-lactamase superfamily; | 97.06 | |
| KOG0814 | 237 | consensus Glyoxylase [General function prediction | 96.93 | |
| KOG3798 | 343 | consensus Predicted Zn-dependent hydrolase (beta-l | 96.72 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 96.13 | |
| PF13691 | 63 | Lactamase_B_4: tRNase Z endonuclease | 95.55 | |
| KOG4736 | 302 | consensus Uncharacterized conserved protein [Funct | 94.63 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 93.78 | |
| KOG3592 | 934 | consensus Microtubule-associated proteins [Cytoske | 92.49 | |
| COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary | 92.43 |
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-143 Score=1163.68 Aligned_cols=681 Identities=48% Similarity=0.854 Sum_probs=598.6
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (706)
+++++.+.|+.++++.||+|++|+.+|||||||++.++...+.++...+++||||||||+.+-|+|||||++.++++++|
T Consensus 1 ~i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 1 IIKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAP 80 (764)
T ss_pred CeeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccce
Confidence 36788889999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEE
Q 005253 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (706)
Q Consensus 84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~ 163 (706)
||||.|+++||+++|+|.|+++.+.++|..|+.+|++.+|++|.+++|+|++.+.+++.|++|+||+|||++|+++|+|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~ 160 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKIS 160 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHH
Q 005253 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (706)
Q Consensus 164 ~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ 242 (706)
..+++|+|+.||||++++||+|..|+.+.||.+|||++.++...+++|++|+ .|++.|.++|++||+||||++.+||++
T Consensus 161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvL 240 (764)
T KOG1135|consen 161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVL 240 (764)
T ss_pred ecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHH
Confidence 9999999999999999999999999999999999999999998889999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCCCCC
Q 005253 243 ELLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319 (706)
Q Consensus 243 ELl~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~~~p 319 (706)
||+.+|+++|.+. ++ .+||+++|++++++++||++|+|||++++.+.|+.+|.|||.|+|+.+|++..++.+++++|
T Consensus 241 ELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gp 320 (764)
T KOG1135|consen 241 ELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGP 320 (764)
T ss_pred HHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCC
Confidence 9999999999987 56 69999999999999999999999999999999999999999999999999999999998889
Q ss_pred cEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCC-CceEeecceEEecchhhHHHHHHHHHHH
Q 005253 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRL 398 (706)
Q Consensus 320 ~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~-~~i~~~~~~~v~L~g~el~~~~~~~~~~ 398 (706)
+|||||.++|++|+|+++|.+|++||+|.||||.+.+++|||+.+...+.+ +.+.+.+++||+|+|+||.+|++.+ ++
T Consensus 321 kVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e-~~ 399 (764)
T KOG1135|consen 321 KVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGE-RL 399 (764)
T ss_pred eEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhh-hh
Confidence 999999999999999999999999999999999999999999999866555 8999999999999999999999986 45
Q ss_pred HHHHHHHhhhhcc---cccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcccCC
Q 005253 399 KKEEALKASLVKE---EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475 (706)
Q Consensus 399 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~k 475 (706)
|.|+++.+.+..+ +++.+||++||++ +..+....|..+ ...+..++ .+||++++++++||||+++|
T Consensus 400 r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~~----~~~~~~~~---~~f~~~~~~~~~MFPy~e~r 468 (764)
T KOG1135|consen 400 RNEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDIM----SKAGKSTK---DGFFKSAKSKHPMFPYIEER 468 (764)
T ss_pred hhhhhHHhhccCCccccccccCCcccccc----cccccccchhhh----hccCCccc---ccccccccccCcccCCcHHh
Confidence 5555555544333 2223333333322 333333333211 11122222 57999999999999999999
Q ss_pred ccccCcCcccCCCcc-ccccccchhhhhccCCCCCCCCccc-----cccccCCCCeeEEeecce----------------
Q 005253 476 SEWDDFGEVINPDDY-IIKDEDMDQAAMHIGGDDGKLDEGS-----ASLILDAKPSKVVSNELT---------------- 533 (706)
Q Consensus 476 ~~~DdYGe~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~P~K~v~~~~~---------------- 533 (706)
+|||||||+|+|+|| ...++..+.+.........++.+++ ......+.|+||++.+..
T Consensus 469 ~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGis 548 (764)
T KOG1135|consen 469 RKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGIS 548 (764)
T ss_pred ccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccc
Confidence 999999999999999 3333333333322111111222221 122346789999965532
Q ss_pred -----------------EeEeCCHHHHHHHHHHHhhc--CCCceeecCCCceEEEeeeeeEEEEEeChhhhhcccceecC
Q 005253 534 -----------------VLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 594 (706)
Q Consensus 534 -----------------ilv~g~~~~~~~l~~~~~~~--~~~~v~~p~~~e~v~~~~~~~~~~v~L~d~L~~~l~~~~~~ 594 (706)
|+|||+.++|+.++..|.+. ++++||+|+.||+|++|+++++|+|+|+|.|++.|.|++++
T Consensus 549 DgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~ 628 (764)
T KOG1135|consen 549 DGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVG 628 (764)
T ss_pred cchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeecc
Confidence 99999999999999999985 45899999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeec--------------------------------CCCceeeccCCC-CCCCCcceeecccchhchhhH
Q 005253 595 DYEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPF 641 (706)
Q Consensus 595 ~~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~igd~rL~~lk~~ 641 (706)
+.+||||+|+|... +...++|+|++. .+|.|++++|||+||+||||.
T Consensus 629 ~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~ 708 (764)
T KOG1135|consen 629 DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQL 708 (764)
T ss_pred cceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHH
Confidence 99999999999311 123578999875 567799999999999999999
Q ss_pred HHhCCCceEEeC-cEEEECCeEEEEecCCCCCCCCCCCcccEEEEcCCChhHHHHHHHHHhhcccC
Q 005253 642 LSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 706 (706)
Q Consensus 642 L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~ai~ 706 (706)
|++.|++|||+| |+|+|||+|||||+.+ |+|.|||++|++||+||+++|+|||+|
T Consensus 709 L~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v 764 (764)
T KOG1135|consen 709 LTEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV 764 (764)
T ss_pred HHhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999977 999999999999999999999999986
|
|
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal | Back alignment and domain information |
|---|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease | Back alignment and domain information |
|---|
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
| >PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B | Back alignment and domain information |
|---|
| >KOG0814 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13691 Lactamase_B_4: tRNase Z endonuclease | Back alignment and domain information |
|---|
| >KOG4736 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 706 | ||||
| 2i7t_A | 459 | Structure Of Human Cpsf-73 Length = 459 | 2e-35 | ||
| 2i7x_A | 717 | Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | 3e-33 | ||
| 3af5_A | 651 | The Crystal Structure Of An Archaeal Cpsf Subunit, | 5e-22 | ||
| 2dkf_A | 431 | Crystal Structure Of Ttha0252 From Thermus Thermoph | 1e-17 | ||
| 3idz_A | 431 | Crystal Structure Of S378q Mutant Ttha0252 From The | 2e-17 | ||
| 3iek_A | 431 | Crystal Structure Of Native Ttha0252 From Thermus T | 2e-17 | ||
| 3ie1_A | 431 | Crystal Structure Of H380a Mutant Ttha0252 From The | 2e-17 | ||
| 3ie0_A | 431 | Crystal Structure Of S378y Mutant Ttha0252 From The | 2e-17 | ||
| 3ie2_A | 431 | Crystal Structure Of H400v Mutant Ttha0252 From The | 2e-17 | ||
| 3a4y_A | 431 | Crystal Structure Of H61a Mutant Ttha0252 From Ther | 2e-17 | ||
| 2xr1_A | 640 | Dimeric Archaeal Cleavage And Polyadenylation Speci | 1e-16 | ||
| 2ycb_A | 636 | Structure Of The Archaeal Beta-Casp Protein With N- | 6e-16 | ||
| 1vme_A | 410 | Crystal Structure Of Flavoprotein (Tm0755) From The | 7e-04 |
| >pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459 | Back alignment and structure |
|
| >pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | Back alignment and structure |
| >pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 | Back alignment and structure |
| >pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8, A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily Length = 431 | Back alignment and structure |
| >pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Length = 431 | Back alignment and structure |
| >pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 | Back alignment and structure |
| >pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 | Back alignment and structure |
| >pdb|1VME|A Chain A, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga Maritima At 1.80 A Resolution Length = 410 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
|---|
Score = 418 bits (1076), Expect = e-137
Identities = 135/705 (19%), Positives = 246/705 (34%), Gaps = 160/705 (22%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
+V D LID GWN ++ KV ID ++LS P LGA
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77
Query: 78 ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYS 132
V++T PV LG ++ D Y S + +D L+DI+ +F + L YS
Sbjct: 78 TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 186
Q L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197
Query: 187 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257
Query: 245 LLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAF 298
+ + E + P+ L+Y T+ Y KS LEW+ S+ K++E + + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--- 355
+ +I +EL P G K+ S +++ ++ + K ++ T+
Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 356 ----------------QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
+ T ++ + + + PL EE A++ + K
Sbjct: 374 ASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKK 433
Query: 400 KEEALKASLVKEEESKASLG----PDNNLSGDPMVIDANNANASADVVEPH--------- 446
++ K LVK E K + G D N D N + H
Sbjct: 434 RDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVENVNGVPPIDHIMGGDEDDD 493
Query: 447 --------------------GGRYRDILIDGFVPPS-TSVAPMFPFYENNSEWDDFGEVI 485
+ ++ +D + PS S MFPF + DD+G V+
Sbjct: 494 EEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKKDDYGTVV 553
Query: 486 NPDDYIIKDE-----------------------------------------------DMD 498
+ ++ D
Sbjct: 554 DFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRAS 613
Query: 499 QAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTV------------------------ 534
+ + G + + + L +D SK + + V
Sbjct: 614 RYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIW 673
Query: 535 ---------LVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 570
L E + +K V + + ++ +
Sbjct: 674 PSLKSRKIVLSAPKQIQNEEITAKLIKKNIE-VVNMPLNKIVEFS 717
|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 | Back alignment and structure |
|---|
| >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 100.0 | |
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 100.0 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 100.0 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 100.0 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 99.94 | |
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 99.88 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 99.87 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.77 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.76 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.76 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.75 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.67 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.67 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.65 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 99.62 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.61 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.54 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 99.53 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 99.52 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 99.51 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 99.51 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 99.51 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 99.5 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 99.5 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 99.49 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 99.48 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 99.46 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 99.46 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 99.45 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 99.45 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 99.44 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 99.44 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 99.44 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 99.42 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 99.42 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 99.42 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.42 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 99.41 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 99.41 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 99.41 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 99.4 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 99.39 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 99.39 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 99.39 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 99.38 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 99.37 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 99.36 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 99.36 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 99.35 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 99.34 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 99.34 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 99.34 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 99.33 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 99.33 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 99.32 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.32 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.3 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 99.3 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.3 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 99.3 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.25 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 99.24 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 99.14 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 98.95 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 98.39 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 98.85 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 98.2 |
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-82 Score=744.13 Aligned_cols=553 Identities=22% Similarity=0.375 Sum_probs=358.3
Q ss_pred EEEEEeecCCC-CCCeEEEEEECCeEEEEeCCCCCCC-C-ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC--
Q 005253 5 VQVTPLSGVFN-ENPLSYLVSIDGFNFLIDCGWNDHF-D-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-- 79 (706)
Q Consensus 5 m~~t~LgGa~~-~g~sc~LL~~~~~~ILiDcG~~~~~-~-~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g-- 79 (706)
|+|++|+|+.+ .+++||||+.++.+||||||+.... . ...+..+....++||+|||||+|.||+||+|+|.++++
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g 80 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhc
Confidence 47888876654 5999999999999999999997531 0 00111222223489999999999999999999987532
Q ss_pred --CCCCeeecchhhhhchhhhHHHHHhhhccCCC--CCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCc
Q 005253 80 --LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155 (706)
Q Consensus 80 --~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~--~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~l 155 (706)
.++|||+|.++..+++.++.+.+........+ ++|+..++..++.++.+++|++++.+.+++++++|+++++||++
T Consensus 81 ~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 37999999999999888888776543322233 46788888888889999999999999322258999999999999
Q ss_pred CceEEEEEeCCeEEEEEecCCCCCccccCcccc--------cCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhc
Q 005253 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 227 (706)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l--------~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~ 227 (706)
|+++|+|+.++.+|+||||+++..++++.++.+ ..+.++|+||+|++|+...++.+...+.|.+.|.+++++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~h~~~~~~~~l~~~i~~~l~~ 240 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888776543 345689999999999887776543223899999999999
Q ss_pred CCeEEEeecCchhHHHHHHHHHHHH-H---hcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCC--CCCC-
Q 005253 228 GGNVLLPVDSAGRVLELLLILEDYW-A---EHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--NAFL- 299 (706)
Q Consensus 228 gG~VLIP~~~~GR~~ELl~~L~~~~-~---~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~--~pf~- 299 (706)
+|+||||+|++||+|||+++|.++| + .+.+ ++|||++|+++.+++++|+.+++||++.+.+.|.. +. +||.
T Consensus 241 ~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~~ 319 (717)
T 2i7x_A 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFEI 319 (717)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTCC
T ss_pred CCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhc-ccccCCccc
Confidence 9999999999999999999999998 2 2234 78999999999999999999999999998877765 44 5999
Q ss_pred CCCeEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCC-CCChhHHHhc--CC--------
Q 005253 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-FGTLARMLQA--DP-------- 368 (706)
Q Consensus 300 ~~~~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~-~~Tl~~~L~~--~~-------- 368 (706)
|+++++ .+.+++.++ ++|+||+||+ .+|+++++|.+||+||+|+||||||+. +||+||+|+. +.
T Consensus 320 ~~~l~~-~~~~~l~~~-~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~~ 394 (717)
T 2i7x_A 320 GSRIKI-IAPNELSKY-PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTF 394 (717)
T ss_dssp TTTEEE-CCGGGGGGC-CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC------
T ss_pred cccCcc-CCHHHHhhC-CCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHhhhhhhccccccc
Confidence 899998 788888887 6799999877 789999999999999999999999999 6999999963 11
Q ss_pred --------CCCceEeecceEEecchhhHHHHHHHHHHHHHH-HHHH-----------------hhhhcccccc-------
Q 005253 369 --------PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE-EALK-----------------ASLVKEEESK------- 415 (706)
Q Consensus 369 --------~~~~i~~~~~~~v~L~g~el~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~------- 415 (706)
.++.|++++.+||||+|+||++|+++++.++++ +++. ++...+++|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (717)
T 2i7x_A 395 PEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVE 474 (717)
T ss_dssp --CCCCEECCEEEEEEEEEEEESCSCCC----------------------------------------------------
T ss_pred ccccccccCCceEEEEEeeeccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccc
Confidence 126899999999999999999999987422221 1111 1111222211
Q ss_pred -------------cCCCCCCCC--CCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcccCCccccC
Q 005253 416 -------------ASLGPDNNL--SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDD 480 (706)
Q Consensus 416 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~k~~~Dd 480 (706)
++|++|+++ +.+...++...+.+. +.+....++||+++++. +++++||||+++|+||||
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---~~~~~mFP~~~~~~k~Dd 548 (717)
T 2i7x_A 475 NVNGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSA---AKKNTEVPVDIIIQPSA---ASKHKMFPFNPAKIKKDD 548 (717)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccchhhcccccccccccc---ccccccCcceeeecccc---CCccCcCCcccCcccccC
Confidence 111111111 011211221111110 11112345799987654 357899999999999999
Q ss_pred cCcccCCCccccccccchh---hhh--------------c--cCCCCCCCCccc----------------------c---
Q 005253 481 FGEVINPDDYIIKDEDMDQ---AAM--------------H--IGGDDGKLDEGS----------------------A--- 516 (706)
Q Consensus 481 YGe~i~~~~~~~~~~~~~~---~~~--------------~--~~~~~~~~~~~~----------------------~--- 516 (706)
|||+||||||+++++..+. +.. + ..+.+.+|++.. .
T Consensus 549 yGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (717)
T 2i7x_A 549 YGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFD 628 (717)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred CCCccCHHHhehhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999864321 000 0 000001111100 0
Q ss_pred ---ccccCCCCeeEEeecce---------------------------------EeEeCCHHHHHHHHHHHhhcCCCceee
Q 005253 517 ---SLILDAKPSKVVSNELT---------------------------------VLVHGSAEATEHLKQHCLKHVCPHVYT 560 (706)
Q Consensus 517 ---~~~~~~~P~K~v~~~~~---------------------------------ilv~g~~~~~~~l~~~~~~~~~~~v~~ 560 (706)
.....++|+|||+++.+ |||||++++|++|+++|++. +.+||+
T Consensus 629 ~~~~~~~~~~P~K~v~~~~~v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~~~~~l~~~~~~~-~~~v~~ 707 (717)
T 2i7x_A 629 NLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVN 707 (717)
T ss_dssp CCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEE
T ss_pred cchhhhccCCCeEEEEeeEEEEEEEEEEEEecCCCCcHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHHHHhc-CCeEEe
Confidence 01135799999987776 99999999999999999864 789999
Q ss_pred cCCCceEEEe
Q 005253 561 PQIEETIDVT 570 (706)
Q Consensus 561 p~~~e~v~~~ 570 (706)
|.+||+|++.
T Consensus 708 p~~~e~v~~~ 717 (717)
T 2i7x_A 708 MPLNKIVEFS 717 (717)
T ss_dssp CCSSCCEEEC
T ss_pred CCCCCeecCC
Confidence 9999999984
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 706 | ||||
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 5e-78 | |
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 1e-05 | |
| d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation prot | 7e-40 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 2e-37 | |
| d1vmea2 | 250 | d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, | 5e-06 | |
| d1wraa1 | 305 | d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi | 4e-04 | |
| d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 | 0.002 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 257 bits (656), Expect = 5e-78
Identities = 100/417 (23%), Positives = 181/417 (43%), Gaps = 32/417 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
+V D LID GWN ++ KV ID ++LS P LGA
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77
Query: 78 ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYS 132
V++T PV LG ++ D Y S + +D L+DI+ +F + L YS
Sbjct: 78 TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 186
Q L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197
Query: 187 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257
Query: 245 LLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD-NAF 298
+ + E + P+ L+Y T+ Y KS LEW+ S+ K++E + + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--Q 356
+ +I +EL + G K+ S +++ ++ + K ++ T+
Sbjct: 318 EIGSRIKIIAPNEL-SKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
+L ++L+ + P G+ + KEE L +
Sbjct: 374 ASSLDKILEI----VEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDN 426
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 100.0 | |
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.76 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.71 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 99.54 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 99.52 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 99.5 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 99.48 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 99.43 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 99.4 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 99.39 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 99.37 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 99.32 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 99.27 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.24 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.24 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.22 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 99.19 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 99.19 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 99.18 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 99.18 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.17 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 99.17 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.17 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 99.16 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 99.04 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 98.98 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 98.97 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 98.73 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 98.46 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-66 Score=582.21 Aligned_cols=357 Identities=25% Similarity=0.449 Sum_probs=308.0
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc--cCCccccCCCCCccEEEcCCCchhhhccHHHHHHh----
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ---- 77 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~--~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~---- 77 (706)
.++++.+ |.++.+++|+||+.++.+|||||||+++... ..+..+...+++||+|||||+|.||+||||+|+++
T Consensus 2 ~~~~~~~-~~g~g~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~ 80 (514)
T d2i7xa1 2 TYKYNCC-DDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (514)
T ss_dssp CEEEEEC-CSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred eEEEEEe-cCCCceeeEEEEEECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhcccc
Confidence 3667765 3344478999999999999999999876542 23445666788999999999999999999999864
Q ss_pred cCCCCCeeecchhhhhchhhhHHHHHhhhccC--CCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCc
Q 005253 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155 (706)
Q Consensus 78 ~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~--~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~l 155 (706)
.++++|||||.||..+++.++.|.++...... ..+.|+.+|++.+++++.+++|+|++.+.+...+++++++++||++
T Consensus 81 ~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHil 160 (514)
T d2i7xa1 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (514)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred cCCCcCEEeCHHHHHHHHHHHHHHHHHhhhhcccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCC
Confidence 24689999999999999999999887665433 3478999999999999999999999999866678999999999999
Q ss_pred CceEEEEEeCCeEEEEEecCCCCCccccCcccccCC-------CCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhc
Q 005253 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF-------VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227 (706)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l-------~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~ 227 (706)
||++|.|+.++++|+|||||++.++++++++.+... ...+.++++++|....++++..++ .|.+.|.+++++
T Consensus 161 Gsa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~ 240 (514)
T d2i7xa1 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (514)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CceEEEEEECCeEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988765321 123344444455555556677777 999999999999
Q ss_pred CCeEEEeecCchhHHHHHHHHHHHHHhcC----C-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHh-cCCCCCCCC
Q 005253 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS----L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAFLLK 301 (706)
Q Consensus 228 gG~VLIP~~~~GR~~ELl~~L~~~~~~~~----l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~-~~~~pf~~~ 301 (706)
||+||||+|++||+|||+.+|+++|++.. . ++|||++|+++.+++++|+.+.|||++++.+.|.. ...+||+|+
T Consensus 241 gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~ 320 (514)
T d2i7xa1 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIG 320 (514)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCT
T ss_pred CCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhcc
Confidence 99999999999999999999999998653 2 78999999999999999999999999999998875 356899999
Q ss_pred CeEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEe--cCCCCCChhHHHh
Q 005253 302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT--ERGQFGTLARMLQ 365 (706)
Q Consensus 302 ~~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iilt--g~~~~~Tl~~~L~ 365 (706)
+++.+.+.+++.++ ++|||||||++| |+++++|.+|++||+|+|||| ||+.++|+++.++
T Consensus 321 ~~~~i~~~~~l~~~-~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~ 382 (514)
T d2i7xa1 321 SRIKIIAPNELSKY-PGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILE 382 (514)
T ss_dssp TTEEECCGGGGGGC-CSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHH
T ss_pred CceeccCHHHHHhc-cCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHh
Confidence 99999999999888 899999999988 999999999999999999999 8999999998775
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
|---|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
|---|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
|---|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
|---|
| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
|---|