Citrus Sinensis ID: 005340
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | 2.2.26 [Sep-21-2011] | |||||||
| Q4PE39 | 773 | Protein transport protein | N/A | no | 0.952 | 0.864 | 0.473 | 0.0 | |
| P0CR38 | 763 | Protein transport protein | yes | no | 0.948 | 0.871 | 0.485 | 0.0 | |
| P0CR39 | 763 | Protein transport protein | N/A | no | 0.948 | 0.871 | 0.485 | 0.0 | |
| A4R1J7 | 770 | Protein transport protein | N/A | no | 0.957 | 0.871 | 0.483 | 0.0 | |
| Q0US25 | 776 | Protein transport protein | N/A | no | 0.958 | 0.865 | 0.479 | 0.0 | |
| Q1DY01 | 772 | Protein transport protein | N/A | no | 0.952 | 0.865 | 0.485 | 0.0 | |
| Q2HB00 | 773 | Protein transport protein | N/A | no | 0.952 | 0.864 | 0.480 | 0.0 | |
| Q2URM9 | 769 | Protein transport protein | yes | no | 0.958 | 0.873 | 0.475 | 0.0 | |
| Q9C284 | 775 | Protein transport protein | N/A | no | 0.961 | 0.869 | 0.473 | 0.0 | |
| A2Q8L1 | 768 | Protein transport protein | yes | no | 0.957 | 0.873 | 0.473 | 0.0 |
| >sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/709 (47%), Positives = 462/709 (65%), Gaps = 41/709 (5%)
Query: 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT-C 64
D+E +DGVR+ WNV P +K EA+ VVP+SA+YTP+K +P + Y P+ C+ C
Sbjct: 5 DVEDRDGVRLSWNVWPSSKIEATRTVVPISALYTPLK----EREDLPPVLYEPVTCKPPC 60
Query: 65 RSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGE 124
R++LNP+ +D K+WICPFC RN FPPHY I+ NLPAEL P+YTTIEY P +
Sbjct: 61 RAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEYTLSRPAQ 120
Query: 125 KSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQ 184
+PP+F++VVDTC+ ++++ L+ AL ++ LLP N+LVGLIT+GT+ QVHELG
Sbjct: 121 ---IPPIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVHELGY--D 175
Query: 185 IIPKTYVFKGSKDVSKDQLLEQLNF-----------------FIKKPKPSTGVIAGVRDG 227
PK+YVF+G+K+ + + + L + P+P A + G
Sbjct: 176 ACPKSYVFRGTKEYAPKAIQDMLGLNPGARPMGAGAPGAPGGPSQAPRPPN---ATAQMG 232
Query: 228 LSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVP 287
S RFL+P CEF L +LE+LQKDPWPV D+RS RCTG ALS+A +L P
Sbjct: 233 AS-----RFLLPVSQCEFQLTQILEQLQKDPWPVANDKRSQRCTGVALSVAVGMLETTFP 287
Query: 288 GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVH 347
+GAR++ F GGP+TEGP +VS L E IRSH D+DKD+A +Y +A+KFY+A++K+
Sbjct: 288 NTGARVMLFCGGPATEGPGMVVSTELRERIRSHHDIDKDNAKYYKRAIKFYEAMAKRAAG 347
Query: 348 QGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDY-DLGL 406
GH +D+FA LDQVG+ E+K T G ++L+DSF +FK S R+F D L +
Sbjct: 348 NGHTIDVFAGCLDQVGLLEMKGLANLTNGHMILADSFQMGIFKQSFHRLFQKDDQGHLQM 407
Query: 407 SSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLV 466
N ++ C+K++KV G+IG S KK + +G G TSAWK+C L TS +
Sbjct: 408 GFNATLDVQCTKELKVSGLIGHAVSANKKSGCVGETEIGIGQTSAWKLCSLTPRTSAGIY 467
Query: 467 FEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGF 526
FE+V P ++ QF+T+YQH GQ RLRVTT++R + G GS Q + A F
Sbjct: 468 FEVV---TPAGQPMQPGSRGLIQFVTHYQHASGQYRLRVTTIARNFAEG-GSGQ-IAASF 522
Query: 527 DQEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIF 586
DQEAAAV+MAR+ FK EI+ D +RWLD+ LI +C +F DY+KD P+SF L FSI+
Sbjct: 523 DQEAAAVLMARIAVFKAEIDDSPDVLRWLDRMLIRLCQKFADYRKDDPTSFRLGENFSIY 582
Query: 587 PQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALL 646
PQFMFHLRRSQF+QVFNNSPDETA++R +LN E+V NS++MIQP+L+SY F P+P LL
Sbjct: 583 PQFMFHLRRSQFLQVFNNSPDETAFYRHVLNTEDVNNSLIMIQPTLMSYGFEGPPQPVLL 642
Query: 647 DVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQVVNFVVD 695
D +I D +LLLD++F ++IFHG T+AQWRKAGY +Q ++ V++
Sbjct: 643 DSVSIRPDVVLLLDTFFHILIFHGETVAQWRKAGYQDQEGYENFKEVLE 691
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|A4R1J7|SEC23_MAGO7 Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0US25|SEC23_PHANO Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q1DY01|SEC23_COCIM Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2HB00|SEC23_CHAGB Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2URM9|SEC23_ASPOR Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9C284|SEC23_NEUCR Protein transport protein sec-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-23 PE=3 SV=1 | Back alignment and function description |
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| >sp|A2Q8L1|SEC23_ASPNC Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | ||||||
| 449498965 | 761 | PREDICTED: protein transport protein SEC | 0.970 | 0.893 | 0.869 | 0.0 | |
| 449470750 | 761 | PREDICTED: protein transport protein SEC | 0.970 | 0.893 | 0.869 | 0.0 | |
| 255571157 | 761 | protein transport protein sec23, putativ | 0.970 | 0.893 | 0.872 | 0.0 | |
| 449454554 | 769 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.970 | 0.884 | 0.859 | 0.0 | |
| 356558936 | 765 | PREDICTED: protein transport protein SEC | 0.972 | 0.891 | 0.828 | 0.0 | |
| 225464297 | 761 | PREDICTED: protein transport protein SEC | 0.971 | 0.894 | 0.825 | 0.0 | |
| 357513131 | 763 | Protein transport protein SEC23 [Medicag | 0.965 | 0.887 | 0.827 | 0.0 | |
| 356504446 | 767 | PREDICTED: protein transport protein SEC | 0.972 | 0.889 | 0.822 | 0.0 | |
| 224129388 | 773 | predicted protein [Populus trichocarpa] | 0.972 | 0.882 | 0.845 | 0.0 | |
| 297744803 | 800 | unnamed protein product [Vitis vinifera] | 0.971 | 0.851 | 0.781 | 0.0 |
| >gi|449498965|ref|XP_004160683.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/688 (86%), Positives = 648/688 (94%), Gaps = 8/688 (1%)
Query: 1 MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLR 60
M EF+DLEAQDGVRMPWNV+PGTKQEASNC+VPVSA+YTPIKAFP +MP+LPY+PLR
Sbjct: 1 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSALYTPIKAFP----NMPVLPYSPLR 56
Query: 61 CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP 120
CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+DDNLPAELFPQYTTIEYE
Sbjct: 57 CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYEST 116
Query: 121 GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELG 180
G S VPPVFMFV+DTCIIEEE++FLKSALSQA+DLLPDNSLVGL+T+GT V VHELG
Sbjct: 117 GE-TPSPVPPVFMFVLDTCIIEEEITFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELG 175
Query: 181 GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA 240
FGQI PKT+VFKG+KDVSKDQLLEQ+NFF+KKPKP TGVIAG RDGLS+++IARFL+P
Sbjct: 176 -FGQI-PKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPK 233
Query: 241 FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300
+CEF LNSVLEELQKDPW VP DQR+ RCTGTALSIAASLLGACVPGSGARILAFVGGP
Sbjct: 234 SECEFALNSVLEELQKDPWGVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGP 293
Query: 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360
ST+GP AIVSKNLSEPIRSHKDLDKDSAPH+HKAVKFY+ LSKQLVHQGHVLDLFACALD
Sbjct: 294 STDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALD 353
Query: 361 QVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDI 420
QVG+AELKVAVEKTGGLVVL++SFGH+VFKDS++RVF SG+YDLGLSSNGIFEINCSKDI
Sbjct: 354 QVGIAELKVAVEKTGGLVVLAESFGHSVFKDSLKRVF-SGEYDLGLSSNGIFEINCSKDI 412
Query: 421 KVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQ 480
KVQG+IGPCASLEKKGPLCSD V+GQGNTSAWKMCGLDKAT+L L+FE+VKK+ DA +Q
Sbjct: 413 KVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGLDKATTLSLIFEVVKKDNSDAAVQ 472
Query: 481 STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVS 540
S +NQFYFQFLTYYQ+N GQMRLRVTTLSRRWVAG GSVQDLIAGFDQEAAA +MARLVS
Sbjct: 473 SASNQFYFQFLTYYQNNNGQMRLRVTTLSRRWVAGTGSVQDLIAGFDQEAAAAIMARLVS 532
Query: 541 FKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQ 600
FKME EAEFDPIRWLDK+LIH+CSRFGDYQKD+PSSFSLSPRFSIFPQF+FHLRRSQFVQ
Sbjct: 533 FKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQ 592
Query: 601 VFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLD 660
VFNNSPDETAYFRMILNRENV NSVVMIQPSLISY+FHS PEP LLDVAAIAADRILLLD
Sbjct: 593 VFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLD 652
Query: 661 SYFTVVIFHGATIAQWRKAGYHNQPEHQ 688
+YFTVVIFHGATIAQWRKAGYHNQPEHQ
Sbjct: 653 AYFTVVIFHGATIAQWRKAGYHNQPEHQ 680
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470750|ref|XP_004153079.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255571157|ref|XP_002526529.1| protein transport protein sec23, putative [Ricinus communis] gi|223534204|gb|EEF35920.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449454554|ref|XP_004145019.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356558936|ref|XP_003547758.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225464297|ref|XP_002265101.1| PREDICTED: protein transport protein SEC23-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357513131|ref|XP_003626854.1| Protein transport protein SEC23 [Medicago truncatula] gi|355520876|gb|AET01330.1| Protein transport protein SEC23 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356504446|ref|XP_003521007.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224129388|ref|XP_002320574.1| predicted protein [Populus trichocarpa] gi|222861347|gb|EEE98889.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297744803|emb|CBI38071.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SZE5 | SC23A_DANRE | No assigned EC number | 0.4681 | 0.9400 | 0.8614 | yes | no |
| Q5R9P3 | SC23A_PONAB | No assigned EC number | 0.4708 | 0.9472 | 0.8679 | yes | no |
| Q2URM9 | SEC23_ASPOR | No assigned EC number | 0.4751 | 0.9586 | 0.8738 | yes | no |
| A3GFA2 | SEC23_PICST | No assigned EC number | 0.4383 | 0.9457 | 0.8851 | yes | no |
| Q6FSI6 | SC232_CANGA | No assigned EC number | 0.4246 | 0.9500 | 0.8797 | yes | no |
| Q05AS9 | SC23A_XENTR | No assigned EC number | 0.4606 | 0.9529 | 0.8732 | yes | no |
| Q54T59 | SEC23_DICDI | No assigned EC number | 0.4473 | 0.9358 | 0.8746 | yes | no |
| Q4WK80 | SEC23_ASPFU | No assigned EC number | 0.4827 | 0.9686 | 0.8705 | yes | no |
| Q15436 | SC23A_HUMAN | No assigned EC number | 0.4707 | 0.9500 | 0.8705 | yes | no |
| Q6CPH3 | SEC23_KLULA | No assigned EC number | 0.4112 | 0.9500 | 0.8763 | yes | no |
| Q6C5L5 | SEC23_YARLI | No assigned EC number | 0.4682 | 0.9457 | 0.8746 | yes | no |
| Q6BQT6 | SEC23_DEBHA | No assigned EC number | 0.4571 | 0.9315 | 0.8753 | yes | no |
| A2Q8L1 | SEC23_ASPNC | No assigned EC number | 0.4736 | 0.9572 | 0.8736 | yes | no |
| P0CR38 | SEC23_CRYNJ | No assigned EC number | 0.4855 | 0.9486 | 0.8715 | yes | no |
| Q5BGR9 | SEC23_EMENI | No assigned EC number | 0.4780 | 0.9586 | 0.8715 | yes | no |
| Q01405 | SC23A_MOUSE | No assigned EC number | 0.4694 | 0.9472 | 0.8679 | yes | no |
| P15303 | SEC23_YEAST | No assigned EC number | 0.4191 | 0.9529 | 0.8697 | yes | no |
| O74873 | SC231_SCHPO | No assigned EC number | 0.4607 | 0.9543 | 0.8814 | yes | no |
| Q758M7 | SEC23_ASHGO | No assigned EC number | 0.4121 | 0.9500 | 0.8809 | yes | no |
| Q8SQX2 | SEC23_ENCCU | No assigned EC number | 0.3100 | 0.8915 | 0.8840 | yes | no |
| A2VDL8 | SC23A_BOVIN | No assigned EC number | 0.4694 | 0.9472 | 0.8645 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 701 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 0.0 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 0.0 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-144 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 6e-71 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 3e-68 | |
| cd11287 | 121 | cd11287, Sec23_C, C-terminal Actin depolymerizatio | 7e-36 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 1e-34 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 3e-23 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 6e-21 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 2e-19 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 1363 bits (3530), Expect = 0.0
Identities = 492/687 (71%), Positives = 574/687 (83%), Gaps = 10/687 (1%)
Query: 3 EFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR 62
+F +LEA DGVRM WNV P +K EAS CV+P++A+YTP+K P +P+LPY PLRCR
Sbjct: 2 DFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCR 57
Query: 63 TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGP 122
TCR++LNP+ VDF AKIWICPFCFQRNHFPPHY+SI++ NLPAELFPQYTT+EY P
Sbjct: 58 TCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPG 117
Query: 123 GEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGF 182
+ PPVF+FVVDTC+IEEE+ LKSAL QAI LLP+N+LVGLITFGT V VHELG F
Sbjct: 118 SGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELG-F 176
Query: 183 GQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFD 242
+ K+YVF+G+K+VSKDQ+LEQL KK +P+ G IAG RDGLSS + RFL+PA +
Sbjct: 177 SEC-SKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASE 235
Query: 243 CEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302
CEFTLNS LEELQKDPWPVPP R RCTG ALS+AA LLGACVPG+GARI+AFVGGP T
Sbjct: 236 CEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCT 295
Query: 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362
EGP AIVSK+LSEPIRSHKDLDKD+AP+Y KAVKFY+ L+KQLV QGHVLD+FAC+LDQV
Sbjct: 296 EGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQV 355
Query: 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIK 421
GVAE+KVAVE+TGGLVVL++SFGH+VFKDS+RRVF G+ LGLS NG FE+NCSKD+K
Sbjct: 356 GVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVK 415
Query: 422 VQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQS 481
VQG IGPCASLEKKGP SD +G+G T+AWK+CGLDK TSL + FE+ + Q
Sbjct: 416 VQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSG--QSNPQP 473
Query: 482 TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541
QF+ QFLT YQH+ GQ RLRVTT++RRWV G S ++L+AGFDQEAAAVVMARL S
Sbjct: 474 PGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMARLASH 532
Query: 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQV 601
KME E EFD RWLD+ALI +CS+FGDY+KD PSSF LSP FS++PQFMF+LRRSQFVQV
Sbjct: 533 KMETEEEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQV 592
Query: 602 FNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDS 661
FNNSPDETAYFRM+LNRENVTNS+VMIQP+LISYSF+ PEP LLDVA+IAADRILLLDS
Sbjct: 593 FNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDVASIAADRILLLDS 652
Query: 662 YFTVVIFHGATIAQWRKAGYHNQPEHQ 688
YF+VVIFHG+TIAQWRKAGYHNQPEH+
Sbjct: 653 YFSVVIFHGSTIAQWRKAGYHNQPEHE 679
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.87 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.75 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.61 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.55 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.52 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.48 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.47 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.47 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.45 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.41 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.21 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.21 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.18 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.15 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.13 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.06 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.05 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.04 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 97.98 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.94 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 97.93 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.89 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 97.85 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.8 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.8 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.68 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.54 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.53 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.52 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.48 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.48 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.44 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.39 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.36 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 97.33 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.2 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.15 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.07 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.03 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.03 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.0 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.37 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.3 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 95.82 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 95.58 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 95.33 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 93.84 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 93.79 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 93.14 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 92.15 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 90.11 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 89.68 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 86.89 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 85.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 85.34 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 84.38 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 80.86 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-150 Score=1305.48 Aligned_cols=684 Identities=71% Similarity=1.191 Sum_probs=633.1
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCCccccCCCCceecCceEEEcCCceE
Q 005340 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIW 81 (701)
Q Consensus 2 ~~~~~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~C~ayiNp~~~~~~~g~~w 81 (701)
|||++.|+.++||+|||+||.++.++++++|||||+|+||++.+ ++|+++++|+||++|+||+||||+|+.+|++|
T Consensus 1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~----~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W 76 (761)
T PLN00162 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIW 76 (761)
T ss_pred CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCC----CCCcCCCCCCccCCCcCEECCceEEecCCCEE
Confidence 78999999999999999999999999999999999999999875 69999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccccCCCCCCCCccccCCCccEEEeCC---CCCCCCCCCcEEEEEEECCCchhhHHHHHHHHHHHhhc
Q 005340 82 ICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP---GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDL 158 (701)
Q Consensus 82 ~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~---~~~~~~~~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~ 158 (701)
+||||++.|.+|++|..+++.++||||+|+++||||++| +.++ .||+|+||||+|..+++++.++++|+++|+.
T Consensus 77 ~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~---~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~ 153 (761)
T PLN00162 77 ICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAP---SPPVFVFVVDTCMIEEELGALKSALLQAIAL 153 (761)
T ss_pred EccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCC---CCcEEEEEEecchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888999999999999999999 5555 7999999999999999999999999999999
Q ss_pred CCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCCccc-cccee
Q 005340 159 LPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDT-IARFL 237 (701)
Q Consensus 159 lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l 237 (701)
||++++|||||||+.||||+|+ .. .+|+++||+|+|+|+.+|+++++++.+....+... .++...+..+.| .++||
T Consensus 154 LP~~a~VGlITF~s~V~~~~L~-~~-~~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~-~~~~~~~~~~~p~~~~fL 230 (761)
T PLN00162 154 LPENALVGLITFGTHVHVHELG-FS-ECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGG-GIAGARDGLSSSGVNRFL 230 (761)
T ss_pred CCCCCEEEEEEECCEEEEEEcC-CC-CCcceEEecCCccCCHHHHHHHhcccccccccccc-ccccccccccCCCcccee
Confidence 9999999999999999999999 66 68999999999999999999998775411101000 000000112344 58999
Q ss_pred EehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCc
Q 005340 238 VPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPI 317 (701)
Q Consensus 238 ~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~ 317 (701)
+|++||+..|+++|++|+++.|++++++|+.||+|+||++|..+|+.+.++.||||++|++||||.|||+|+.++.++++
T Consensus 231 vpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~ 310 (761)
T PLN00162 231 LPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPI 310 (761)
T ss_pred EEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccc
Confidence 99999999999999999998898888999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchhhHHHHHHHh
Q 005340 318 RSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397 (701)
Q Consensus 318 ~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l 397 (701)
|+|+|++++++++++++.+||++||++|+++||+||+|+++.+|+||+||+.|++.|||.+++|++|+.+.|+++|+|+|
T Consensus 311 rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~ 390 (761)
T PLN00162 311 RSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVF 390 (761)
T ss_pred cCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHh
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCcEEEEEEEEecCCCCc
Q 005340 398 H-SGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPD 476 (701)
Q Consensus 398 ~-~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 476 (701)
+ +..+++.+||+|+||||||+|++|.+++||+++..++++++||+++|+|+++.|+++++++++||+|+|++++....
T Consensus 391 ~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~- 469 (761)
T PLN00162 391 ERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQS- 469 (761)
T ss_pred cccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEcccccc-
Confidence 4 44445678999999999999999999999999887888889999999999999999999999999999999987510
Q ss_pred ccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 005340 477 ATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEIEAEFDPIRWLD 556 (701)
Q Consensus 477 ~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~~~~~~~~~~~~~~~~l~ 556 (701)
.++ .+...+||||+++||+.+|+|||||||++++++.. +++.+++++||+||++++|||+++.++.+++..|+++||+
T Consensus 470 ~~~-~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~-~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld 547 (761)
T PLN00162 470 NPQ-PPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEG-SSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLD 547 (761)
T ss_pred CCC-CCCceEEEEEEEEEEcCCCCEEEEEEccccCccCC-CCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 001 23567999999999999999999999999997642 3688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCccccCccccchHHHHHHhhcccCcCCCCCChhHHHHHHHHHccCCHHHHHHhhcccceecc
Q 005340 557 KALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYS 636 (701)
Q Consensus 557 ~~lv~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~l~~~~ 636 (701)
++|+++|.+|+.|||+++++|+||++|++||+|||||+||++|+++|+|||||+++||.++++++++++.||||+|++||
T Consensus 548 ~~li~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~ 627 (761)
T PLN00162 548 RALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYS 627 (761)
T ss_pred HHHHHHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCCCCccHHHHHHhhhhc
Q 005340 637 FHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQVVNFVVDFDF 698 (701)
Q Consensus 637 ~~~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~~~e~~~~~~~~~~~~ 698 (701)
+++.|+|++||+++|.+|+|||||+|++|+||+|++|++|+|+|||++|||++||++||+..
T Consensus 628 ~~~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~ 689 (761)
T PLN00162 628 FNGPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQ 689 (761)
T ss_pred CCCCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999998753
|
|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 701 | ||||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 1e-175 | ||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-175 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-175 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-149 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-149 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 4e-11 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 6e-11 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 3e-10 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 3e-10 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 4e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 2e-09 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-06 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 6e-04 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 7e-04 |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
|
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 602 bits (1553), Expect = 0.0
Identities = 320/695 (46%), Positives = 445/695 (64%), Gaps = 23/695 (3%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 60
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 120
Query: 115 IEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLV 174
IEY +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +V
Sbjct: 121 IEYVVLRG---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMV 177
Query: 175 QVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIA 234
QVHELG + I K+YVF+G+KD+S QL E L K
Sbjct: 178 QVHELGC--EGISKSYVFRGTKDLSAKQLQEMLGL----SKVPVTQATRGPQVQQPPPSN 231
Query: 235 RFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARIL 294
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GARI+
Sbjct: 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIM 291
Query: 295 AFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDL 354
F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV+D+
Sbjct: 292 MFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDI 351
Query: 355 FACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFE 413
+ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF + G E
Sbjct: 352 YACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLE 411
Query: 414 INCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKE 473
I S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE+V +
Sbjct: 412 IKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH 471
Query: 474 IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAV 533
+ QF+T YQH+ GQ R+RVTT++R W +Q++ A FDQEAAA+
Sbjct: 472 NAP---IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAI 528
Query: 534 VMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHL 593
+MARL ++ E E D +RWLD+ LI +C +FG+Y KD PSSF S FS++PQFMFHL
Sbjct: 529 LMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHL 588
Query: 594 RRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAA 653
RRS F+QVFNNSPDE++Y+R R+++T S++MIQP L +YSF PEP LLD ++I A
Sbjct: 589 RRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILA 648
Query: 654 DRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQ 688
DRILL+D++F ++I+HG TIAQWRK+GY + PE++
Sbjct: 649 DRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYE 683
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.62 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.16 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.64 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.35 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.2 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.19 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.18 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.17 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.13 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.11 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.09 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.01 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 97.99 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 97.97 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 97.97 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 97.95 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 97.93 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 97.93 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 97.78 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 97.77 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.74 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.56 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.51 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.41 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.07 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 96.99 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 95.99 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 94.98 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.89 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 94.55 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 94.51 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 93.99 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 93.69 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 93.37 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 93.2 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 93.18 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 93.13 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 92.94 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 92.92 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 92.42 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 91.89 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 89.53 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 86.52 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 83.56 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 82.84 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 82.49 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 80.41 | |
| 2j9u_B | 76 | VPS36, vacuolar protein sorting-associated protein | 80.12 |
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-145 Score=1271.26 Aligned_cols=677 Identities=47% Similarity=0.886 Sum_probs=618.8
Q ss_pred CCCcc----cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCCccccCC--CCceecCceEE
Q 005340 1 MTEFM----DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (701)
Q Consensus 1 ~~~~~----~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~ 74 (701)
||||+ +||+|+|||+|||+||.+++++++++||||++|+||++.+ ++|+++++|+||++ ||||+||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 78875 4899999999999999999999999999999999999764 79999999999999 99999999999
Q ss_pred EcCCceEEeCCCCCCCCCCccccCCCCCCCCccccCCCccEEEeCCCCCCCCCCCcEEEEEEECCCchhhHHHHHHHHHH
Q 005340 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (701)
Q Consensus 75 ~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvIDvs~~~~~l~~~~~~l~~ 154 (701)
+.+|++|+||||++.|++|++|+.++..++||||.|+++||||+++++.+ .||+|+||||+|.+++++++++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999999877889999998889999999998766 799999999999999999999999999
Q ss_pred HhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCCc-ccc
Q 005340 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSS-DTI 233 (701)
Q Consensus 155 ~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~p~ 233 (701)
+|+.||++++|||||||+.||||+++ ++ .++++|||+|+|+|+.+|+++|+++++. .+++.. + .++++| +|.
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~-~~~~~~vf~G~k~~~~~q~~~ml~v~d~--~~~~~~-~--~~~~~f~~p~ 230 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CE-GISKSYVFRGTKDLSAKQLQEMLGLSKV--PVTQAT-R--GPQVQQPPPS 230 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CC-SSCEEEEEETTSCCCSHHHHHHHC------------------------CC
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CC-CCccceeecCCccccHHHHHHHhCCCCc--cccccc-c--cccccCCCcc
Confidence 99999999999999999999999999 76 6789999999999999999999877641 000000 0 002344 567
Q ss_pred cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCC
Q 005340 234 ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNL 313 (701)
Q Consensus 234 ~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~ 313 (701)
++||+|++++++.|+++|++|++++|++++++++.||+|+||++|..+|+..+++.||||++|++|+||.|||+|+.++.
T Consensus 231 ~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~ 310 (769)
T 2nut_A 231 NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDEL 310 (769)
T ss_dssp CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred cceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCccc
Confidence 89999999999999999999999888888889999999999999999999877789999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchhhHHHH
Q 005340 314 SEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSV 393 (701)
Q Consensus 314 ~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l 393 (701)
++++|+|+|++||++++++++.+||+++|++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|.++|
T Consensus 311 ~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l 390 (769)
T 2nut_A 311 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTF 390 (769)
T ss_dssp TSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHH
T ss_pred ccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCcEEEEEEEEecC
Q 005340 394 RRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKK 472 (701)
Q Consensus 394 ~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 472 (701)
+|.| ++..+++.+||+|+||||||+||+|++++||++..+++++++||+++|+|+++.|+++++++++||+|+|++++.
T Consensus 391 ~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~ 470 (769)
T 2nut_A 391 QRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQ 470 (769)
T ss_dssp HHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC--
T ss_pred HHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCc
Confidence 9999 444444578999999999999999999999999998899999999999999999999999999999999999987
Q ss_pred CCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCH---HHHHhccCHHHHHHHHHHHHHHHhhcCCch
Q 005340 473 EIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV---QDLIAGFDQEAAAVVMARLVSFKMEIEAEF 549 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~---~~~~~~~D~~a~~~~lak~~~~~~~~~~~~ 549 (701)
... ++ .....+|||+|++||+.+|+|||||||+++++++ +. .++|+++|+||++++|||+++.++++++..
T Consensus 471 ~~~--~l-~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~---~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~ 544 (769)
T 2nut_A 471 HNA--PI-PQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWAD---AQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP 544 (769)
T ss_dssp -----------CCEEEEEEEEEEETTSCEEEEEEEEEECBCC---GGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---
T ss_pred ccc--cc-CCCCeEEEEEEEEEECCCCCEEEEEEeecccccC---CcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHH
Confidence 421 01 1357899999999999999999999999999995 45 699999999999999999999999999899
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCCCccccCccccchHHHHHHhhcccCcCCCCCChhHHHHHHHHHccCCHHHHHHhhc
Q 005340 550 DPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQ 629 (701)
Q Consensus 550 ~~~~~l~~~lv~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~D~r~~~~~~l~~~~~~~~~~~iy 629 (701)
|+|+||+++|+++|.+|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+++++.++++++.+++.|||
T Consensus 545 d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iy 624 (769)
T 2nut_A 545 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQ 624 (769)
T ss_dssp CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccCCCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCCCCccHHHHHHhhhh
Q 005340 630 PSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQVVNFVVDFD 697 (701)
Q Consensus 630 P~l~~~~~~~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~~~e~~~~~~~~~~~ 697 (701)
|+||++|.++.|++++||+++|.+|||||||+|++++||+|++|++|++++||++|||++|+++|++.
T Consensus 625 P~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p 692 (769)
T 2nut_A 625 PILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAP 692 (769)
T ss_dssp CEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHH
T ss_pred CEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhH
Confidence 99999999889999999999999999999999999999999999999999999999999999999864
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 701 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 8e-92 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 8e-58 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 4e-54 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 2e-47 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 4e-15 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 1e-28 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 4e-28 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 3e-24 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 7e-19 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 0.004 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 284 bits (728), Expect = 8e-92
Identities = 106/271 (39%), Positives = 160/271 (59%), Gaps = 3/271 (1%)
Query: 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIP 187
VPP+F FVVD E + LK ++ ++ LLP N+L+GLIT+G +VQ+H+L I
Sbjct: 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSET--ID 58
Query: 188 KTYVFKGSKDVSKDQLLEQLNFF-IKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFT 246
+ VF+G ++ + L E L P + + + ++ ++ RF +P EF
Sbjct: 59 RCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFK 118
Query: 247 LNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306
LN +LE L D W VP R R TG+AL+IA+ LL C ARI+ F GP T P
Sbjct: 119 LNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPG 178
Query: 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366
IV+ L +P+RSH D+D D A HY KA KFY+ +++++ GH +D+FA DQ+G++E
Sbjct: 179 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238
Query: 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397
+K + TGG+++L+D+F A+FK S R+F
Sbjct: 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 269
|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.93 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.85 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.85 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.81 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.72 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.5 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.41 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.19 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 97.96 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 97.9 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.87 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.73 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.7 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.58 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.5 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.48 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.45 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.38 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.06 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 96.9 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.88 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 96.22 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 95.59 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 95.51 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 95.13 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 94.65 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-54 Score=441.78 Aligned_cols=269 Identities=39% Similarity=0.690 Sum_probs=239.3
Q ss_pred CCcEEEEEEECCCchhhHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHh
Q 005340 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL 207 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l 207 (701)
.||+||||||+|.++++++.++++|+++|+.+|++++|||||||+.||||+++ +. ..++.+||+|+|+|+.+++++++
T Consensus 1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~-~~-~~~~~~v~~g~~~~~~~~~~~~~ 78 (271)
T d2qtva3 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEML 78 (271)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECS-CS-SCCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECC-CC-cCccceeccCccccCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999 76 77899999999999999999887
Q ss_pred hcccCCCCCCCccccCccCCCCccc-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccC
Q 005340 208 NFFIKKPKPSTGVIAGVRDGLSSDT-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACV 286 (701)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~ 286 (701)
............+....+.++.+.| .++|++|++++++.|+++|++|++++|+.++++++.||+|+||++|..+|++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~ 158 (271)
T d2qtva3 79 TGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY 158 (271)
T ss_dssp HCCC-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHC
T ss_pred hccccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhc
Confidence 6543110000011111233455666 488999999999999999999998888888899999999999999999999777
Q ss_pred CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhc
Q 005340 287 PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366 (701)
Q Consensus 287 ~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~ 366 (701)
++.||||++|++|+||.|||+|+.|+.++++|+|+|++++++++++++.+||++||.+|++.||+||+|+++.+++|+++
T Consensus 159 ~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~~ 238 (271)
T d2qtva3 159 KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238 (271)
T ss_dssp TTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHHH
T ss_pred cCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChHH
Confidence 78999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred chhhhccccceEEEeCCCCchhhHHHHHHHhc
Q 005340 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH 398 (701)
Q Consensus 367 l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~ 398 (701)
|+.|++.|||.+++|++|+.+.|+++|+|+|+
T Consensus 239 l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~ 270 (271)
T d2qtva3 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 270 (271)
T ss_dssp HTHHHHTTTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred HHhHHhhCCceEEEeCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999984
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| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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