Citrus Sinensis ID: 005345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRSEGSTTSRSSFSEFGNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAAGEVTNDDKPAMQASLAVA
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEEEcccccccccHHHHcEEEEEEEEccccccccHHHHHHHcccccccccccccEEEEccccccccccEEcEEEEEEEEEccccccccccEEEEEEEEEHHHcccccccccEEEEEEEEEcccccccccEEEEEEEEEEccccHHHHHHccccccccccccccccccccccccHHHHHHcccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHccHHHHHHcccccccHHHHHHHccEEEEEEccccEEEEEccccccccccccccccccccHHHHHHHHHcccccccEEEEEEccEEEEEEEcccEEEEEccccHHHHHccccEEEEEEcccccEEcccccccccccccHHHHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHHcccHHHHHHHHcccccccccccEEEEEEEEcccccccHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHcHccEEEEEEEEEccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEEEHHHHHHHcccccEEEEEEEEccccccccccEEEEEEEEEEEcccccccccccccEccccccccccccccccccHHHHHHHcHHHHHEHHHHccHHHHHHccccccccccccccccccccccccccccccHccccccccccccEEEEcccccccEEEcccccccEEEEcccccccccccccccHHHHHcHccHHHcccccccccccccccHcHcccccccccccccHHcccccccccccccccccccccccHHHcccccccEcccEEEEEEEcccccEEEcEEEEEEEccccHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHcccHHHHHHcccccccHHHHHHHccccEEEEccccEEEEEcccccccccccHHHcccccHHHHHHHHHcccccccEEEEEEccccEEEEEEcHccEEEEccccHHHccccccEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mrwrqsppfghasrnyEAFTVIQRLegfnikqsdNEARQRLVVEIKWKGLFSFFGLRRKILMINLTeegdevgdgvvqwnnqdfhysghvfpwELHFTIFnglnqgqrQKVTAMGTATLNLAKYAnsdkekelqikvpltvsgdtiegdpylCLSFRLIESRFAQESLQagqrsivplttsptsgeavpmgKDELSAVKAGLQKMKIFTDFVSRKRRakktcteqeccdgkgsdaeydfvsetdspdddargnldmnkekaIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKrgilpwstrklrfrsrktkeepllkkdyreeggddidfvrrqlsssddssfgwrsegsttsrssfsefgndnfsvgcWERKevisrdgnmKLEAQVFLASIDqrseraagESACTALVAVIANWLqcnpkemptksefdnliregsldwrnlceneeyirrfpdkhfdLETVLEAqicplfvvpensfvgffhpeglelggnfnflhdamsfdSIWDEIIrcgstdpsiyiiSWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKfdkdatikrlpkdtksseenskasdkaalaanpsegtAVVCRVeegtvyrgKESCKEYIKSFLAAIPIRELHTDIKkglmastplhhrlqvefhytrllkpqeaefaagevtnddkpAMQASLAVA
Flexible Loop (DISEMBL)
mrwrqsppfghasrnyEAFTVIQRLEgfnikqsdneARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYansdkekelqikvpltvsgdtiegDPYLCLSFRLIESRFAQESLQagqrsivplttsptsgeavpmGKDELSAVKAGLQKMKIFtdfvsrkrrakktcteqeccdgkgsdaeydfvsetdspdddargnLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSlqqtvkrgilpwstrklrfrsrktkeepllkkdyreeggddidfvrrqlsssddssfgwrsegsttsrssfsefgndnfsvgCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILkfdkdatikrlpkdtksseenskasdkaalaanpsegtavvCRVEegtvyrgkesCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEfaagevtnddKPAMQASLAVA
Low Complexity Region (SEG)
MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQLsssddssFGWrsegsttsrssfsefgNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAAGEVTNDDKPAMQASLAVA
Disordered region (IsUnstruct)
**************NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS***KELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFA************************************GLQKMKIFTDFVS************************************************IVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRKL***********************************************************DNFSVGCWERKEVISRDGNMKLEAQVFLASIDQ****AAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATI*****************************TAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLK**************************
Disordered Region (DISOPRED)
**WRQS*PFGHASRNYEAFTVIQRLEGFN**********RLVVEIKWKGLFSF*****************EVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQ***QKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIES********************************ELSAVKAGLQKMKIFTD*************************************************************LASAKVNLEDEGWIYY************************WST*******************YREEGGDD**********************************NDNFSVGCWERKEVI*****MKLEAQVFLASIDQ********SACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATI*****************************************YRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLL******************AMQASLAV*
Disordered Region (DISEMBL)
MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSR****************KGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQL*********************FSEFGNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQ*********ACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRL************************EGTAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAAGEVTNDDKPAMQASLAVA
Disordered Region (DISPRO)
*RWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQ********S*****************KDELSAVKAGLQKMKIFTDFVSRK********************************************KAIVQRSFSYETLASAKVNLEDEGWIYYRSC*********************W*TRKLRFRS*****EPL*K*****EGGDDIDFV*RQ*************************FGNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRLPK******************************VEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLK*********************S****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRSEGSTTSRSSFSEFGNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAAGEVTNDDKPAMQASLAVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
224110100	704	predicted protein [Populus trichocarpa]	0.921	0.917	0.566	0.0
225439372	751	PREDICTED: uncharacterized protein LOC10	0.958	0.894	0.539	0.0
359481061	750	PREDICTED: uncharacterized protein LOC10	0.958	0.896	0.538	0.0
255546821	733	conserved hypothetical protein [Ricinus	0.941	0.900	0.549	0.0
359481059	727	PREDICTED: uncharacterized protein LOC10	0.931	0.898	0.536	0.0
224091465	781	predicted protein [Populus trichocarpa]	0.957	0.859	0.517	0.0
224097548	707	predicted protein [Populus trichocarpa]	0.920	0.912	0.563	0.0
449437490	714	PREDICTED: uncharacterized protein LOC10	0.940	0.922	0.523	0.0
449501141	714	PREDICTED: uncharacterized LOC101210414	0.917	0.900	0.534	0.0
296089356	715	unnamed protein product [Vitis vinifera]	0.920	0.902	0.536	0.0

>gi|224110100|ref|XP_002315415.1| predicted protein [Populus trichocarpa] gi|222864455|gb|EEF01586.1| predicted protein [Populus trichocarpa]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/717 (56%), Positives = 491/717 (68%), Gaps = 71/717 (9%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNI----KQSDNEARQRLVVEIKWKGLFSFFGL 56
           MRW   PP   +SR +EA  ++ +L+G ++    +Q+ +E+++ LVVEIKWKG       
Sbjct: 6   MRWPPWPPL--SSRKFEAKLIVHKLQGLDLVQDEEQNSDESKKGLVVEIKWKGQ-KGIAF 62

Query: 57  RRKILMINLTEEGDEVGDGVVQWN-------NQDFHYSGHVFPWELHFTIFNGLNQGQRQ 109
           RR +   N TEEG   GDG  QWN       N   +  G   PWE+ F +F+GLNQG R 
Sbjct: 63  RRSVKR-NFTEEGGFEGDGF-QWNEEFRSVCNLSGNKDGVFLPWEIAFAVFSGLNQGPRS 120

Query: 110 KVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQ 169
           KV  +GTATLNL++YA++ KEKE +I VPLTV   T+EG P L LS RL+E R  +E LQ
Sbjct: 121 KVLLVGTATLNLSEYASTAKEKEAEIAVPLTVHNGTVEGTPLLHLSLRLMELRTIREPLQ 180

Query: 170 AGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCD 229
           A QR I    +SP+S E +   +DELS +KAGL+K+K       RK+   K  +   CC+
Sbjct: 181 AVQRVIETAPSSPSSLETLSPRRDELSVLKAGLRKVK---SLQVRKKACHKENSNDRCCN 237

Query: 230 GKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAK-----------VN 278
            +  D E ++  +TDS DDDA G  + +      Q SF+YETLA A             N
Sbjct: 238 -RIEDHEDNYPFDTDSLDDDAEGESEESNGDPSAQLSFNYETLAHANKAGGSFHSISITN 296

Query: 279 LEDEGWIYYRSCNLD----------CVENSKSLQQTVKRGILPWSTRKLRFRSRK--TKE 326
            EDE WIYY  C  D            ++ +S +Q+ K GIL W  RKL F S K  +K 
Sbjct: 297 GEDESWIYYNHCKPDMGSLYVEYPTASDHEQSSKQSSKLGILAWRKRKLSFISPKPKSKG 356

Query: 327 EPLLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCW 384
           EPLLKKD  EEGGDDIDF RRQLSSSD+SSFGW    EGSTTSRSSF+EFG DNF+VG W
Sbjct: 357 EPLLKKDCGEEGGDDIDFDRRQLSSSDESSFGWNKSEEGSTTSRSSFTEFGGDNFTVGSW 416

Query: 385 ERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEF 444
           E KEVISRD +MKL+AQVF ASIDQRSERAAG+SACTALVA IANWLQ N  E+P KSEF
Sbjct: 417 ETKEVISRDRHMKLQAQVFFASIDQRSERAAGQSACTALVAFIANWLQSNRYEVPIKSEF 476

Query: 445 DNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLE 504
           D LIR+GSL+WRNLCE E+Y +RFPDKHFDLET+L+AQICPL VVPE SF+GFFHPEGLE
Sbjct: 477 DCLIRDGSLEWRNLCEKEDYRQRFPDKHFDLETILQAQICPLSVVPEKSFIGFFHPEGLE 536

Query: 505 LGGNFNFLHDAMSFDSIWDEIIRCGS-----TDPSIYIISWNDHFFVLKIEQEAYYIIDT 559
             G+F+FLH AMSFDSIW EI   GS     +DP +Y++SWNDHFFVLK+E++AYYIIDT
Sbjct: 537 --GDFDFLHGAMSFDSIWQEISHHGSDWSNNSDPLVYVVSWNDHFFVLKVERDAYYIIDT 594

Query: 560 LGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVE 619
           LGERLYEGCNQAY+LKFDKD TI++LPK+TK S+E +                     +E
Sbjct: 595 LGERLYEGCNQAYVLKFDKDTTIQKLPKETKGSDEKTTP-------------------ME 635

Query: 620 EGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKP 676
           E  V +GKESCKEYIKSFLAAIP+REL  DIKKGLMASTPLHHRLQ+EFHYT+L  P
Sbjct: 636 EEIVCKGKESCKEYIKSFLAAIPLRELQADIKKGLMASTPLHHRLQIEFHYTQLTLP 692

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439372|ref|XP_002270072.1| PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/723 (53%), Positives = 489/723 (67%), Gaps = 51/723 (7%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           MRWR  PP     R YE   V++R+EG+     +    +R+VVEI+WKG   S   LRR 
Sbjct: 6   MRWRPWPPL--IPRKYEVKLVVRRMEGWGCAGEEGAEGRRVVVEIRWKGPKISLSSLRRT 63

Query: 60  ILMINLTEEGDEVGDGVVQWNNQDFH-------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
           +   N T+E D   DGVV W+ ++F        Y  +VF PWE+ FT+ NG +QG + KV
Sbjct: 64  VKR-NFTKEEDVGQDGVVLWD-EEFQSVCNLSAYKDNVFHPWEIAFTVLNGSHQGPKNKV 121

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +GTA+LN+A++A++ +EKE ++ +PLT+ G   E  P LC+S  L+E R AQE   + 
Sbjct: 122 PVVGTASLNIAEFASAAEEKEFELNIPLTLPGGAAEPHPLLCISLSLLELRTAQEPTDSV 181

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQEC---- 227
           QR+IVP+ +SP  GE     KDELSA+KAGL+K+KIFT++VS  RRAKK C E+E     
Sbjct: 182 QRAIVPVPSSPRPGETASTEKDELSAIKAGLRKVKIFTEYVS-TRRAKKACREEEGSEGR 240

Query: 228 CDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------K 276
           C  +  D +Y +  ++DS DD   G  D  KE + V++SFSY TLA A           +
Sbjct: 241 CSARSEDGDYTYPFDSDSLDDFEEGETDEGKEDSSVRKSFSYGTLAYANCAGGSFYSNTR 300

Query: 277 VNLEDEGWIYY--RSCNLDC--VENSK---SLQQTVKRGILPWSTRKLRFRSRKTKEEPL 329
           +N  DE W+YY  R  ++ C  +++S    S  Q+ KR IL W  RKL FRS K + EPL
Sbjct: 301 INGGDEDWVYYSNRKSDVGCSQIDDSNAAVSELQSSKRSILSWRKRKLSFRSPKARGEPL 360

Query: 330 LKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERK 387
           LKK Y E+GGDDIDF RRQLSS +   FGW    E S+ +RSS SEFG+DNF++G WE+K
Sbjct: 361 LKKAYGEDGGDDIDFDRRQLSSDESLPFGWHKTDEDSSANRSSVSEFGDDNFAIGNWEQK 420

Query: 388 EVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNL 447
           EV+SRDG+MK++ QVF ASIDQRSERAAGESACTALVAVIANW Q N   MP KS+FD+L
Sbjct: 421 EVVSRDGHMKVQTQVFFASIDQRSERAAGESACTALVAVIANWFQTNRDIMPIKSQFDSL 480

Query: 448 IREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGG 507
           IREGSL+WRNLC+NE Y   FPDKHFDL+TVLEA+I PL VVP  SF+GFFHP+G++  G
Sbjct: 481 IREGSLEWRNLCDNETYREGFPDKHFDLDTVLEAKIRPLSVVPGKSFIGFFHPDGMD-EG 539

Query: 508 NFNFLHDAMSFDSIWDEIIRCGSTDPS-----IYIISWNDHFFVLKIEQEAYYIIDTLGE 562
            F+FL  AMSFDSIWDEI   GS  PS     +YI+SWNDHFFVL +E EAYYIIDTLGE
Sbjct: 540 RFDFLQGAMSFDSIWDEISHAGSESPSNSGPQVYIVSWNDHFFVLIVEPEAYYIIDTLGE 599

Query: 563 RLYEGCNQAYILKFDKDATIKRL-----PKDTKSSEENSKASDKAALAANPSEGTAVVCR 617
           RLYEGC+QAYILKF +D  + +L     P D K   +   +S    +   P E TA    
Sbjct: 600 RLYEGCDQAYILKFGRDTKLYKLSSVPQPSDEKPGGDQQMSSVAGPVVTKPEESTADEEE 659

Query: 618 VEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQ 677
            E   V +GKESCKEYIK+FLAAIPIREL  DIKKGLMASTPLH RLQ+EFHYT+LL+P 
Sbjct: 660 AE--VVCQGKESCKEYIKNFLAAIPIRELQADIKKGLMASTPLHRRLQIEFHYTQLLQPA 717

Query: 678 EAE 680
           + E
Sbjct: 718 QPE 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481061|ref|XP_003632563.1| PREDICTED: uncharacterized protein LOC100254761 isoform 3 [Vitis vinifera]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/722 (53%), Positives = 491/722 (68%), Gaps = 50/722 (6%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           MRWR  PP     R YE   V++R+EG+     +    +R+VVEI+WKG   S   LRR 
Sbjct: 6   MRWRPWPPL--IPRKYEVKLVVRRMEGWGCAGEEGAEGRRVVVEIRWKGPKISLSSLRRT 63

Query: 60  ILMINLTEEGDEVGDGVVQWNNQDFH-------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
           +   N T+E D   DGVV W+ ++F        Y  +VF PWE+ FT+ NG +QG + KV
Sbjct: 64  VKR-NFTKEEDVGQDGVVLWD-EEFQSVCNLSAYKDNVFHPWEIAFTVLNGSHQGPKNKV 121

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +GTA+LN+A++A++ +EKE ++ +PLT+ G   E  P LC+S  L+E R AQE   + 
Sbjct: 122 PVVGTASLNIAEFASAAEEKEFELNIPLTLPGGAAEPHPLLCISLSLLELRTAQEPTDSV 181

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQEC---- 227
           QR+IVP+ +SP  GE     KDELSA+KAGL+K+KIFT++VS  RRAKK C E+E     
Sbjct: 182 QRAIVPVPSSPRPGETASTEKDELSAIKAGLRKVKIFTEYVS-TRRAKKACREEEGSEGR 240

Query: 228 CDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------K 276
           C  +  D +Y +  ++DS DD   G  D  KE + V++SFSY TLA A           +
Sbjct: 241 CSARSEDGDYTYPFDSDSLDDFEEGETDEGKEDSSVRKSFSYGTLAYANCAGGSFYSNTR 300

Query: 277 VNLEDEGWIYY--RSCNLDC--VENSK---SLQQTVKRGILPWSTRKLRFRSRKTKEEPL 329
           +N  DE W+YY  R  ++ C  +++S    S  Q+ KR IL W  RKL FRS K + EPL
Sbjct: 301 INGGDEDWVYYSNRKSDVGCSQIDDSNAAVSELQSSKRSILSWRKRKLSFRSPKARGEPL 360

Query: 330 LKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERK 387
           LKK Y E+GGDDIDF RRQLSS +   FGW    E S+ +RSS SEFG+DNF++G WE+K
Sbjct: 361 LKKAYGEDGGDDIDFDRRQLSSDESLPFGWHKTDEDSSANRSSVSEFGDDNFAIGNWEQK 420

Query: 388 EVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNL 447
           EV+SRDG+MK++ QVF ASIDQRSERAAGESACTALVAVIANW Q N   MP KS+FD+L
Sbjct: 421 EVVSRDGHMKVQTQVFFASIDQRSERAAGESACTALVAVIANWFQTNRDIMPIKSQFDSL 480

Query: 448 IREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGG 507
           IREGSL+WRNLC+NE Y   FPDKHFDL+TVLEA+I PL VVP  SF+GFFHP+G++  G
Sbjct: 481 IREGSLEWRNLCDNETYREGFPDKHFDLDTVLEAKIRPLSVVPGKSFIGFFHPDGMD-EG 539

Query: 508 NFNFLHDAMSFDSIWDEIIRCGSTDPS-----IYIISWNDHFFVLKIEQEAYYIIDTLGE 562
            F+FL  AMSFDSIWDEI   GS  PS     +YI+SWNDHFFVL +E EAYYIIDTLGE
Sbjct: 540 RFDFLQGAMSFDSIWDEISHAGSESPSNSGPQVYIVSWNDHFFVLIVEPEAYYIIDTLGE 599

Query: 563 RLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAA----NPSEGTAVVCRV 618
           RLYEGC+QAYILKF +D  + +L    + S+E      ++++A      P E TA     
Sbjct: 600 RLYEGCDQAYILKFGRDTKLYKLSSVPQPSDEKPVNPQESSVAGPVVTKPEESTADEEEA 659

Query: 619 EEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQE 678
           E   V +GKESCKEYIK+FLAAIPIREL  DIKKGLMASTPLH RLQ+EFHYT+LL+P +
Sbjct: 660 E--VVCQGKESCKEYIKNFLAAIPIRELQADIKKGLMASTPLHRRLQIEFHYTQLLQPAQ 717

Query: 679 AE 680
            E
Sbjct: 718 PE 719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546821|ref|XP_002514469.1| conserved hypothetical protein [Ricinus communis] gi|223546465|gb|EEF47965.1| conserved hypothetical protein [Ricinus communis]

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/722 (54%), Positives = 479/722 (66%), Gaps = 62/722 (8%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF-FGLRRK 59
           MRW   PP   +SR YE   VI++++G  +K      ++RLVVE+KWKG  S   G  RK
Sbjct: 6   MRWPPWPPV--SSRKYEVKIVIKKVKG--VKCDYGSEKRRLVVEVKWKGQKSIGLGPLRK 61

Query: 60  ILMINLTEEGDEVGDGVVQWN-------NQDFHYSGHVFPWELHFTIFNGLNQGQRQKVT 112
            +  N TEEG   GDGV +WN       N   +    ++PWE+ F++F GLNQ  R  V 
Sbjct: 62  SVKSNFTEEGGFCGDGVYEWNEEFKNLCNFSAYKDSFLYPWEVAFSVFTGLNQEPRNTVL 121

Query: 113 AMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAGQ 172
            +GTAT+NLA++ ++  EK+L++ VPL V     EG+  LCLS RL+E    QE  QA  
Sbjct: 122 -VGTATVNLAEFVSAAIEKDLELNVPLVVLRSNTEGNSLLCLSLRLMELVTVQEPPQAVP 180

Query: 173 RSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGK- 231
             I P   SP+S EA    +DE S +KA L K+KIF       R  KK   ++E  DGK 
Sbjct: 181 TLIQPAPASPSSEEAQLPWRDEPSGLKASLGKVKIF-------REKKKVYHDEESSDGKN 233

Query: 232 ---GSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAKV--------NLE 280
              G D EY++  +TDS DDD+    + +      +    Y TLA A          N E
Sbjct: 234 CVRGEDGEYNYPFDTDSLDDDSESESEQSNGDPTTRLPLDYGTLAHANFAGGLSTISNAE 293

Query: 281 DEGWIYYRSCNLDCVE----------NSKSLQQTVKRGILPWSTRKLRFRSRKTK--EEP 328
           D+GWI+Y +  LD                SL+Q+ KR IL W  R L FR  KTK   EP
Sbjct: 294 DDGWIFYNNRKLDVAPIHVGESTGAVYENSLKQSSKRRILSWKKRALNFRFAKTKVKGEP 353

Query: 329 LLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWER 386
           LLKKDY + GGDDIDF RRQLSSSD+SS GW    +GSTTSRSSFSEFG D+F++G WE 
Sbjct: 354 LLKKDYGDSGGDDIDFDRRQLSSSDESSLGWNKSEDGSTTSRSSFSEFGEDHFAIGSWEL 413

Query: 387 KEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDN 446
           KE+ISRDG+MKL+AQVF ASIDQRSERAAGESACTALVAVIANWLQ NP EMP KSEFD 
Sbjct: 414 KEMISRDGHMKLQAQVFFASIDQRSERAAGESACTALVAVIANWLQSNPYEMPIKSEFDR 473

Query: 447 LIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELG 506
           LIR+GSL+WRNLCENE+Y ++FPDKHFDLETV++A+I P  V+ E SF+GFFHPEGLE G
Sbjct: 474 LIRDGSLEWRNLCENEDYKQQFPDKHFDLETVIQAEIRPFSVIAEKSFIGFFHPEGLE-G 532

Query: 507 GNFNFLHDAMSFDSIWDEIIRCGST-----DPSIYIISWNDHFFVLKIEQEAYYIIDTLG 561
           G+F+FL  AMSFDSIW+EI   GS      DP IYI+SWNDHFFVLK+EQ+AYYIIDTLG
Sbjct: 533 GDFDFLQGAMSFDSIWEEISHNGSNCPANRDPMIYIVSWNDHFFVLKVEQDAYYIIDTLG 592

Query: 562 ERLYEGCNQAYILKFDKDATIKRLPKDTKSSEE----------NSKASDKAALAANPSEG 611
           ERLYEGCNQAYILKF+KD TI+RLP +TK S+           NSK  + A      S  
Sbjct: 593 ERLYEGCNQAYILKFNKDTTIQRLPIETKESDNKLESDKVQPGNSKEKNSAKKILQSSPN 652

Query: 612 TAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYT 671
            A   ++EE  V +GKESCKEYIK FLAAIPIREL  DIKKGLMASTP+HHRLQ+EFHYT
Sbjct: 653 EAGKSQMEEEIVCKGKESCKEYIKRFLAAIPIRELQADIKKGLMASTPIHHRLQIEFHYT 712

Query: 672 RL 673
           +L
Sbjct: 713 QL 714

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481059|ref|XP_003632562.1| PREDICTED: uncharacterized protein LOC100254761 isoform 2 [Vitis vinifera]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/718 (53%), Positives = 486/718 (67%), Gaps = 65/718 (9%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           MRWR  PP     R YE   V++R+EG+     +    +R+VVEI+WKG   S   LRR 
Sbjct: 6   MRWRPWPPL--IPRKYEVKLVVRRMEGWGCAGEEGAEGRRVVVEIRWKGPKISLSSLRRT 63

Query: 60  ILMINLTEEGDEVGDGVVQWNNQDFH-------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
           +   N T+E D   DGVV W+ ++F        Y  +VF PWE+ FT+ NG +QG + KV
Sbjct: 64  VKR-NFTKEEDVGQDGVVLWD-EEFQSVCNLSAYKDNVFHPWEIAFTVLNGSHQGPKNKV 121

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +GTA+LN+A++A++ +EKE ++ +PLT+ G   E  P LC+S  L+E R AQE   + 
Sbjct: 122 PVVGTASLNIAEFASAAEEKEFELNIPLTLPGGAAEPHPLLCISLSLLELRTAQEPTDSV 181

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQEC---- 227
           QR+IVP+ +SP  GE     KDELSA+KAGL+K+KIFT++VS  RRAKK C E+E     
Sbjct: 182 QRAIVPVPSSPRPGETASTEKDELSAIKAGLRKVKIFTEYVS-TRRAKKACREEEGSEGR 240

Query: 228 CDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------K 276
           C  +  D +Y +  ++DS DD   G  D  KE + V++SFSY TLA A           +
Sbjct: 241 CSARSEDGDYTYPFDSDSLDDFEEGETDEGKEDSSVRKSFSYGTLAYANCAGGSFYSNTR 300

Query: 277 VNLEDEGWIYY--RSCNLDC--VENSK---SLQQTVKRGILPWSTRKLRFRSRKTKEEPL 329
           +N  DE W+YY  R  ++ C  +++S    S  Q+ KR IL W  RKL FRS K + EPL
Sbjct: 301 INGGDEDWVYYSNRKSDVGCSQIDDSNAAVSELQSSKRSILSWRKRKLSFRSPKARGEPL 360

Query: 330 LKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERK 387
           LKK Y E+GGDDIDF RRQLSS +   FGW    E S+ +RSS SEFG+DNF++G WE+K
Sbjct: 361 LKKAYGEDGGDDIDFDRRQLSSDESLPFGWHKTDEDSSANRSSVSEFGDDNFAIGNWEQK 420

Query: 388 EVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNL 447
           EV+SRDG+MK++ QVF ASIDQRSERAAGESACTALVAVIANW Q N   MP KS+FD+L
Sbjct: 421 EVVSRDGHMKVQTQVFFASIDQRSERAAGESACTALVAVIANWFQTNRDIMPIKSQFDSL 480

Query: 448 IREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGG 507
           IREGSL+WRNLC+NE Y   FPDKHFDL+TVLEA+I PL VVP  SF+GFFHP+G++  G
Sbjct: 481 IREGSLEWRNLCDNETYREGFPDKHFDLDTVLEAKIRPLSVVPGKSFIGFFHPDGMD-EG 539

Query: 508 NFNFLHDAMSFDSIWDEIIRCGSTDPS-----IYIISWNDHFFVLKIEQEAYYIIDTLGE 562
            F+FL  AMSFDSIWDEI   GS  PS     +YI+SWNDHFFVL +E EAYYIIDTLGE
Sbjct: 540 RFDFLQGAMSFDSIWDEISHAGSESPSNSGPQVYIVSWNDHFFVLIVEPEAYYIIDTLGE 599

Query: 563 RLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGT 622
           RLYEGC+QAYILKF +D  + +L    + S+E  + ++             VVC      
Sbjct: 600 RLYEGCDQAYILKFGRDTKLYKLSSVPQPSDEKPEEAE-------------VVC------ 640

Query: 623 VYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAE 680
             +GKESCKEYIK+FLAAIPIREL  DIKKGLMASTPLH RLQ+EFHYT+LL+P + E
Sbjct: 641 --QGKESCKEYIKNFLAAIPIRELQADIKKGLMASTPLHRRLQIEFHYTQLLQPAQPE 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091465|ref|XP_002309261.1| predicted protein [Populus trichocarpa] gi|222855237|gb|EEE92784.1| predicted protein [Populus trichocarpa]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/764 (51%), Positives = 503/764 (65%), Gaps = 93/764 (12%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEA-------------RQRLVVEIKW 47
           MRWR  PP    S+ YE   V++R+EG+++ +    A              ++L VEI+W
Sbjct: 2   MRWRPWPPL--VSKKYEVRLVVRRMEGWDVVREAVAAAPGTSSGGDLKDKSEKLTVEIRW 59

Query: 48  KGL-FSFFGLRRKILMINLTEEGD------EVGDGVVQWNNQDFH-------YSGHVF-P 92
           KG   +   LRR  +  N T+E +      E G  +V+W+ ++F        Y  +VF P
Sbjct: 60  KGPKLALSSLRRTAVKRNFTKEVEVCGAEGENGGVLVEWD-EEFESLCTLSAYKENVFHP 118

Query: 93  WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYL 152
           WE+ FT+FNG NQGQ+ KV  +GTAT+NLA++A++ ++KE+++++PL VS    E  P L
Sbjct: 119 WEISFTVFNGGNQGQKNKVPVVGTATVNLAEFASTAEQKEVELRLPLVVSAGVAEPQPLL 178

Query: 153 CLSFRLIESRFAQESLQAGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFV 212
           C+S  L+E R A E+ +  QR+IVP+ + P SGEAV   KDELSA+KAGL+K+KIFT +V
Sbjct: 179 CVSLSLLELRTATETSEPLQRAIVPVPSPPQSGEAVSTEKDELSAIKAGLRKVKIFTGYV 238

Query: 213 SRKRRAKKTCTEQEC----CDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFS 268
           S  RRAKK C E+E     C  +  D E ++  +++S DD   G  D  KE + V++SFS
Sbjct: 239 S-TRRAKKACREEEGSEGRCSARSEDGEDNYPFDSESLDDLEEGESDEIKEDSTVRKSFS 297

Query: 269 YETLASAK-----------VNLEDEGWIYY--RSCNLDCVEN--------SKSLQQTVKR 307
           Y TLASA            +N EDE W+YY  R  ++ C  +        + SL Q+ KR
Sbjct: 298 YGTLASANYAGGPFHSSTTINDEDEDWVYYSNRKSDVGCSHSDDYTPSVSAPSLLQSSKR 357

Query: 308 GILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGST 365
            ILPW  RKL FRS K K EPLLKK Y EEGGDDIDF RRQLSS +  + GW    E ++
Sbjct: 358 SILPWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDFDRRQLSSDESLALGWHKADEDTS 417

Query: 366 TSRSSFSEFGNDNFSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVA 425
            +RSS SEFG+DNF++G WE+KEVISRDG MKL+ +VF ASIDQRSERAAGESACTALVA
Sbjct: 418 ANRSSVSEFGDDNFAIGSWEKKEVISRDGQMKLQTEVFFASIDQRSERAAGESACTALVA 477

Query: 426 VIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICP 485
           VIA+W Q N   MP KS+FD+LIREGSL+WRNLCENE Y  RFPDKHFDLETVL+A+I  
Sbjct: 478 VIADWFQNNRGLMPIKSQFDSLIREGSLEWRNLCENETYRERFPDKHFDLETVLQAKIRF 537

Query: 486 LFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIR----CGSTD-PSIYIISW 540
           L V+P  SF+GFFHPEG++  G F+FL  AMSFD+IWDEI R    C S D P +Y++SW
Sbjct: 538 LSVLPVKSFIGFFHPEGMD-EGRFDFLQGAMSFDNIWDEISRTGLECPSDDEPQVYVVSW 596

Query: 541 NDHFFVLKIEQEAYYIIDTLGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENS---- 596
           NDHFF+LK+E +AYYIIDTLGERLYEGCNQAYILKFD +  I +L    +SS+E +    
Sbjct: 597 NDHFFILKVEPKAYYIIDTLGERLYEGCNQAYILKFDSNTIINKLQNAAESSDEKTMGDQ 656

Query: 597 --------------------KASDKAALAANPSEGTAV---VCRVEEGTVY-RGKESCKE 632
                               +AS   A+  NP E +     +   EEG V  +GK+SCKE
Sbjct: 657 QNVPATVEPKDQQQVNLKEEEASILGAIITNPEEPSKSEEPLKSEEEGEVVCQGKDSCKE 716

Query: 633 YIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKP 676
           YIKSFLAAIPIREL  DIKKGLMAS PLHHRLQ+EFHYT+ L+P
Sbjct: 717 YIKSFLAAIPIRELQADIKKGLMASKPLHHRLQIEFHYTQHLQP 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097548|ref|XP_002310982.1| predicted protein [Populus trichocarpa] gi|222850802|gb|EEE88349.1| predicted protein [Populus trichocarpa]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/721 (56%), Positives = 491/721 (68%), Gaps = 76/721 (10%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFN----IKQSDNEARQRLVVEIKWKGLFSFFGL 56
           MRW   PP   +SR +EA  +I +L+G N    ++Q+++E+++R VVE+KWKG      L
Sbjct: 6   MRWPPWPPL--SSRKFEAKVIIHKLQGLNLVQDVEQNNDESKKRFVVEMKWKGQ-KGIAL 62

Query: 57  RRKILMINLTEEGDEVGDGVVQWN-------NQDFHYSGHVFPWELHFTIFNGLNQGQRQ 109
           RR     N TEEG   GDGV +WN       N   +  G   PWE+ F +F+G+ QG R 
Sbjct: 63  RRSAKR-NFTEEGGFCGDGVFEWNEEFKSVCNLSGNKDGVFLPWEIAFAVFSGMKQGPRN 121

Query: 110 KVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQ 169
           KV  +GTATLNLA+YA++ KE+E +I VPLTV   T+EG P L LS +L+E R  QE LQ
Sbjct: 122 KVILVGTATLNLAEYASTAKEREAKIDVPLTVHNGTVEGTPLLHLSLKLMELRTIQEPLQ 181

Query: 170 AGQRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQ---- 225
           A QR I     SP+S E +   +DELS +KAGL+K+K F       +  KK C E+    
Sbjct: 182 APQRVIKTAPPSPSSLETLSPRRDELSVLKAGLRKVKSF-------QVTKKACHEENNYD 234

Query: 226 ECCDGKGSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASAK--------- 276
            CC  +  DAE ++  +TDS D+D  G  + +   +  Q  F+YETL  A          
Sbjct: 235 RCC-VRSEDAEDNYPFDTDSLDND--GESEESNGDSSAQLPFNYETLGHANKAGGSFYSN 291

Query: 277 --VNLEDEGWIYYRSCNLDC----VENS------KSLQQTVKRGILPWSTRKLRFRSRK- 323
              N EDE WIYY     D     VE+S      +SL+Q+  RGIL W  RKL F S K 
Sbjct: 292 AITNSEDESWIYYNHRKQDMGSLYVESSTASDHEQSLRQSSIRGILAWRKRKLSFISAKP 351

Query: 324 -TKEEPLLKKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFS 380
            +K EPLLKKD  E GGDDIDF RRQLSSSD+SS GW    EGSTTSRSSFSEFG+D F+
Sbjct: 352 KSKGEPLLKKDCGE-GGDDIDFDRRQLSSSDESSSGWNKLEEGSTTSRSSFSEFGDDKFA 410

Query: 381 VGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPT 440
           VG WE KEVISRDG+MKL+AQVF ASIDQRSERAAGESACTALVAVIANWLQ N  E+P 
Sbjct: 411 VGSWEAKEVISRDGHMKLQAQVFFASIDQRSERAAGESACTALVAVIANWLQSNQYEVPI 470

Query: 441 KSEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHP 500
           KSEFD+LIR GSL+WRNLCE E+Y +RFPDKHFDLET+L+A+I PL VV E SF+GFFHP
Sbjct: 471 KSEFDSLIRVGSLEWRNLCEKEDYRQRFPDKHFDLETILQAKIRPLSVVQEKSFIGFFHP 530

Query: 501 EGLELGGNFNFLHDAMSFDSIWDEIIRCG-----STDPSIYIISWNDHFFVLKIEQEAYY 555
           EGLE  G+F+FLH AMSFDS+  EI   G     + DP IYI+SWNDHFFVLK+EQ+AYY
Sbjct: 531 EGLE-EGDFDFLHGAMSFDSMRQEINHHGLDLSSNCDPFIYIVSWNDHFFVLKVEQDAYY 589

Query: 556 IIDTLGERLYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVV 615
           IIDTLGERLYEGCNQAY+LKFDKD  I++LP +TK S+E + A +K  +           
Sbjct: 590 IIDTLGERLYEGCNQAYVLKFDKDTIIRKLPMETKESDEKT-AGNKTLM----------- 637

Query: 616 CRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLK 675
              EE  V +GKESCKEYIKSFLAAIPIREL  D+KKGLMASTPLHHRLQ+EFHYT+L +
Sbjct: 638 ---EEEIVCKGKESCKEYIKSFLAAIPIRELRADMKKGLMASTPLHHRLQIEFHYTQLTQ 694

Query: 676 P 676
           P
Sbjct: 695 P 695

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437490|ref|XP_004136525.1| PREDICTED: uncharacterized protein LOC101210414 [Cucumis sativus]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/733 (52%), Positives = 490/733 (66%), Gaps = 74/733 (10%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           M+WR  PP    SR YE   V++RLEG +  + D +   +L VE+KWKG   +   LRR 
Sbjct: 6   MKWRPWPPL--VSRKYEVRLVVKRLEGLDPPK-DGKGVDKLTVEVKWKGPKMALSPLRRT 62

Query: 60  ILMINLTEEGDEVG-DGVVQWNNQDFH------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
            +  N T+E D +  +GV QW+ +         Y  +VF PWE+ F+ FNGLNQG + KV
Sbjct: 63  AVKRNYTKEADGLDQNGVTQWDEEFLSVCTLSAYKENVFHPWEIVFSAFNGLNQGSKNKV 122

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +G+A+LNL++Y +  ++KEL++K+PL  S +  E    L +S  L+E R AQ   Q  
Sbjct: 123 QVVGSASLNLSEYVSVAEQKELELKIPLNPSTNATEASHVLWISLNLLELRTAQVVSQPV 182

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGK 231
           QRSI P  + P  GE VP  KDELSA+KAGL+K+KIFT+FVS  R+AKKTC E+E     
Sbjct: 183 QRSIAPAPSPPWPGENVPAEKDELSALKAGLRKVKIFTEFVS-TRKAKKTCHEEE----- 236

Query: 232 GSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------KVNLE 280
           GS+  Y F  ++DS DD   G  D  KE   +++SFSY TLA A           K+N +
Sbjct: 237 GSEGSYPF--DSDSFDDIEEGETDEGKEDTNIRKSFSYGTLAYANYAGGSYYSDMKINGD 294

Query: 281 DEGWIYY--RSCNLDC--VENS------KSLQQTVKRGILPWSTRKLRFRSRKTKEEPLL 330
           DE  +YY  R  ++ C  +E+S      + L Q+ KRG+LPW  RKL FRS K K EPLL
Sbjct: 295 DENLVYYSNRKSDVGCSSMEDSTASASEQPLPQSSKRGLLPWRKRKLSFRSPKAKGEPLL 354

Query: 331 KKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERKE 388
           KK Y EEGGDDID  RRQLSS +  S GW+   E S+ +RSS SEFG+DNF++G WE+KE
Sbjct: 355 KKAYGEEGGDDIDHDRRQLSSDESLSIGWQKTEEDSSANRSSVSEFGDDNFAIGTWEQKE 414

Query: 389 VISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLI 448
           ++SRDG+MKL+ QVF ASIDQRSERAAGESACTALVAVIA+W   +   MP KS+FD+LI
Sbjct: 415 IVSRDGHMKLQTQVFFASIDQRSERAAGESACTALVAVIADWFHNSQNLMPIKSQFDSLI 474

Query: 449 REGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGN 508
           R+GSL+WR LCEN+ Y  +FPDKHFDLETV++A+I PL VVP  SF+GFFHPEG+     
Sbjct: 475 RDGSLEWRKLCENDIYREKFPDKHFDLETVVQAKIRPLSVVPRKSFIGFFHPEGVN-EAR 533

Query: 509 FNFLHDAMSFDSIWDEIIRCGS-----TDPSIYIISWNDHFFVLKIEQEAYYIIDTLGER 563
           F+FLH AMSFD+IWDEI R GS     ++P +Y++SWNDHFF+L +E +AYYIIDTLGER
Sbjct: 534 FDFLHGAMSFDNIWDEISRTGSECPDNSEPQVYVVSWNDHFFILNVESDAYYIIDTLGER 593

Query: 564 LYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTV 623
           LYEGCNQAYILKFD + TI ++P+ ++S+E                E   V+C       
Sbjct: 594 LYEGCNQAYILKFDNNTTICKMPETSQSAEPL-------------KEKDEVLC------- 633

Query: 624 YRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAA 683
            RGKESCKEYIKSFLAAIPIREL  DIKKGLMASTPLHHRLQ+E HYT++L+P       
Sbjct: 634 -RGKESCKEYIKSFLAAIPIRELQADIKKGLMASTPLHHRLQIELHYTQILQPS----PI 688

Query: 684 GEVTNDDKPAMQA 696
            ++  D  P  Q+
Sbjct: 689 SQLPEDPNPTPQS 701

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501141|ref|XP_004161288.1| PREDICTED: uncharacterized LOC101210414 [Cucumis sativus]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/713 (53%), Positives = 484/713 (67%), Gaps = 70/713 (9%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           M+WR  PP    SR YE   V++RLEG +  + D +   +L VE+KWKG   +   LRR 
Sbjct: 6   MKWRPWPPL--VSRKYEVRLVVKRLEGLDPPK-DGKGVDKLTVEVKWKGPKMALSPLRRT 62

Query: 60  ILMINLTEEGDEVG-DGVVQWNNQDFH------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
            +  N T+E D +  +GV QW+ +         Y  +VF PWE+ F+ FNGLNQG + KV
Sbjct: 63  AVKRNYTKEADGLDQNGVTQWDEEFLSVCTLSAYKENVFHPWEIVFSAFNGLNQGSKNKV 122

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +G+A+LNL++Y +  ++KEL++K+PL  S +  E    L +S  L+E R AQ   Q  
Sbjct: 123 QVVGSASLNLSEYVSVAEQKELELKIPLNPSTNATEASHVLWISLNLLELRTAQVVSQPV 182

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGK 231
           QRSI P  + P  GE VP  KDELSA+KAGL+K+KIFT+FVS  R+AKKTC E+E     
Sbjct: 183 QRSIAPAPSPPWPGENVPAEKDELSALKAGLRKVKIFTEFVS-TRKAKKTCHEEE----- 236

Query: 232 GSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------KVNLE 280
           GS+  Y F  ++DS DD   G  D  KE   +++SFSY TLA A           K+N +
Sbjct: 237 GSEGSYPF--DSDSFDDIEEGETDEGKEDTNIRKSFSYGTLAYANYAGGSYYSDMKINGD 294

Query: 281 DEGWIYY--RSCNLDC--VENS------KSLQQTVKRGILPWSTRKLRFRSRKTKEEPLL 330
           DE  +YY  R  ++ C  +E+S      + L Q+ KRG+LPW  RKL FRS K K EPLL
Sbjct: 295 DENLVYYSNRKSDVGCSSMEDSTASASEQPLPQSSKRGLLPWRKRKLSFRSPKAKGEPLL 354

Query: 331 KKDYREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERKE 388
           KK Y EEGGDDID  RRQLSS +  S GW+   E S+ +RSS SEFG+DNF++G WE+KE
Sbjct: 355 KKAYGEEGGDDIDHDRRQLSSDESLSIGWQKTEEDSSANRSSVSEFGDDNFAIGTWEQKE 414

Query: 389 VISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLI 448
           ++SRDG+MKL+ QVF ASIDQRSERAAGESACTALVAVIA+W   +   MP KS+FD+LI
Sbjct: 415 IVSRDGHMKLQTQVFFASIDQRSERAAGESACTALVAVIADWFHNSQNLMPIKSQFDSLI 474

Query: 449 REGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGN 508
           R+GSL+WR LCEN+ Y  +FPDKHFDLETV++A+I PL VVP  SF+GFFHPEG+     
Sbjct: 475 RDGSLEWRKLCENDIYREKFPDKHFDLETVVQAKIRPLSVVPRKSFIGFFHPEGVN-EAR 533

Query: 509 FNFLHDAMSFDSIWDEIIRCGS-----TDPSIYIISWNDHFFVLKIEQEAYYIIDTLGER 563
           F+FLH AMSFD+IWDEI R GS     ++P +Y++SWNDHFF+L +E +AYYIIDTLGER
Sbjct: 534 FDFLHGAMSFDNIWDEISRTGSECPDNSEPQVYVVSWNDHFFILNVESDAYYIIDTLGER 593

Query: 564 LYEGCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTV 623
           LYEGCNQAYILKFD + TI ++P+ ++S+E                E   V+C       
Sbjct: 594 LYEGCNQAYILKFDNNTTICKMPETSQSAEPL-------------KEKDEVLC------- 633

Query: 624 YRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKP 676
            RGKESCKEYIKSFLAAIPIREL  DIKKGLMASTPLHHRLQ+E HYT++L+P
Sbjct: 634 -RGKESCKEYIKSFLAAIPIRELQADIKKGLMASTPLHHRLQIELHYTQILQP 685

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089356|emb|CBI39128.3| unnamed protein product [Vitis vinifera]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/714 (53%), Positives = 482/714 (67%), Gaps = 69/714 (9%)

Query: 1   MRWRQSPPFGHASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRK 59
           MRWR  PP     R YE   V++R+EG+     +    +R+VVEI+WKG   S   LRR 
Sbjct: 6   MRWRPWPPL--IPRKYEVKLVVRRMEGWGCAGEEGAEGRRVVVEIRWKGPKISLSSLRRT 63

Query: 60  ILMINLTEEGDEVGDGVVQWNNQDFH-------YSGHVF-PWELHFTIFNGLNQGQRQKV 111
           +   N T+E D   DGVV W+ ++F        Y  +VF PWE+ FT+ NG +QG + KV
Sbjct: 64  VKR-NFTKEEDVGQDGVVLWD-EEFQSVCNLSAYKDNVFHPWEIAFTVLNGSHQGPKNKV 121

Query: 112 TAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQESLQAG 171
             +GTA+LN+A++A++ +EKE ++ +PLT+ G   E  P LC+S  L+E R AQE   + 
Sbjct: 122 PVVGTASLNIAEFASAAEEKEFELNIPLTLPGGAAEPHPLLCISLSLLELRTAQEPTDSV 181

Query: 172 QRSIVPLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGK 231
           QR+IVP+ +SP  GE     KDELSA+KAGL+K+KIFT++VS  RRAKK C E+E  +G+
Sbjct: 182 QRAIVPVPSSPRPGETASTEKDELSAIKAGLRKVKIFTEYVS-TRRAKKACREEEGSEGR 240

Query: 232 GSDAEYDFVSETDSPDDDARGNLDMNKEKAIVQRSFSYETLASA-----------KVNLE 280
                    S  +S DD   G  D  KE + V++SFSY TLA A           ++N  
Sbjct: 241 --------CSARNSLDDFEEGETDEGKEDSSVRKSFSYGTLAYANCAGGSFYSNTRINGG 292

Query: 281 DEGWIYY--RSCNLDC--VENSK---SLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKD 333
           DE W+YY  R  ++ C  +++S    S  Q+ KR IL W  RKL FRS K + EPLLKK 
Sbjct: 293 DEDWVYYSNRKSDVGCSQIDDSNAAVSELQSSKRSILSWRKRKLSFRSPKARGEPLLKKA 352

Query: 334 YREEGGDDIDFVRRQLSSSDDSSFGWRS--EGSTTSRSSFSEFGNDNFSVGCWERKEVIS 391
           Y E+GGDDIDF RRQLSS +   FGW    E S+ +RSS SEFG+DNF++G WE+KEV+S
Sbjct: 353 YGEDGGDDIDFDRRQLSSDESLPFGWHKTDEDSSANRSSVSEFGDDNFAIGNWEQKEVVS 412

Query: 392 RDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREG 451
           RDG+MK++ QVF ASIDQRSERAAGESACTALVAVIANW Q N   MP KS+FD+LIREG
Sbjct: 413 RDGHMKVQTQVFFASIDQRSERAAGESACTALVAVIANWFQTNRDIMPIKSQFDSLIREG 472

Query: 452 SLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNF 511
           SL+WRNLC+NE Y   FPDKHFDL+TVLEA+I PL VVP  SF+GFFHP+G++  G F+F
Sbjct: 473 SLEWRNLCDNETYREGFPDKHFDLDTVLEAKIRPLSVVPGKSFIGFFHPDGMD-EGRFDF 531

Query: 512 LHDAMSFDSIWDEIIRCGSTDPS-----IYIISWNDHFFVLKIEQEAYYIIDTLGERLYE 566
           L  AMSFDSIWDEI   GS  PS     +YI+SWNDHFFVL +E EAYYIIDTLGERLYE
Sbjct: 532 LQGAMSFDSIWDEISHAGSESPSNSGPQVYIVSWNDHFFVLIVEPEAYYIIDTLGERLYE 591

Query: 567 GCNQAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYRG 626
           GC+QAYILKF +D  + +L    + S+E  + ++             VVC        +G
Sbjct: 592 GCDQAYILKFGRDTKLYKLSSVPQPSDEKPEEAE-------------VVC--------QG 630

Query: 627 KESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAE 680
           KESCKEYIK+FLAAIPIREL  DIKKGLMASTPLH RLQ+EFHYT+LL+P + E
Sbjct: 631 KESCKEYIKNFLAAIPIRELQADIKKGLMASTPLHRRLQIEFHYTQLLQPAQPE 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2175493	782	AT5G04860 [Arabidopsis thalian	0.579	0.519	0.563	1.7e-150
TAIR|locus:2081511	702	AT3G11760 "AT3G11760" [Arabido	0.673	0.672	0.511	3.2e-120
TAIR|locus:2063550	278	AT2G10560 "AT2G10560" [Arabido	0.343	0.866	0.5	1e-59
TAIR|locus:2040060	423	AT2G25460 "AT2G25460" [Arabido	0.194	0.321	0.496	3e-48

TAIR|locus:2175493 AT5G04860 [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 1.7e-150, Sum P(2) = 1.7e-150
 Identities = 247/438 (56%), Positives = 296/438 (67%)

Query:   278 NLEDEGWIYY--RS-------CNLDCVENSKSLQQTV----KRGILPWSTRKLRFRSRKT 324
             N EDE  IYY  RS       C+ +   +  SL+Q      K+ +L W  RKL FRS K 
Sbjct:   313 NPEDEDLIYYSHRSPLAETGHCSDEVSNDVVSLEQAKGQMSKKRMLSWKKRKLSFRSPKQ 372

Query:   325 KEEPLLKKDYREEGGDDIDFVRRQLXXXXXXXFGWXXXXXXXXXXXXXXXXNDNFSVGCW 384
             K EPLLKKD  EEGGDDIDF RRQL         W                +D+F VG W
Sbjct:   373 KGEPLLKKDCLEEGGDDIDFDRRQLSSSDESNSDWYRSDDAIMKPLSQFG-DDDFVVGSW 431

Query:   385 ERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEF 444
             E KE+ISRDG MKL A+VFLASIDQRSERAAGESACTALVAV+A+WL  N   +PT+SEF
Sbjct:   432 ETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRDIIPTRSEF 491

Query:   445 DNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLE 504
             D+LIREGS +WRN+CENEEY  RFPDKHFDLETVL+A++ P+ VVPE SF+GFFHPE  E
Sbjct:   492 DSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIGFFHPEKSE 551

Query:   505 L--G---GNFNFLHDAMSFDSIWDEIIRC----GSTDPSIYIISWNDHFFVLKIEQEAYY 555
                G    + +FL   MSFDSIW+E+++      +++P IYI+SWNDHFFVL +  +AYY
Sbjct:   552 EEEGKEDASLDFLKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVLLVNHDAYY 611

Query:   556 IIDTLGERLYEGCNQAYILKFDKDATIKRLP---KDTKSSEENSKASDKAALAANPSEGT 612
             IIDTLGERLYEGCNQAY+LKFDKDA IKRLP   KD K+   N K   K   +  P    
Sbjct:   612 IIDTLGERLYEGCNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNK-SEQPERSK 670

Query:   613 AVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTR 672
                 + EE  V RGKESC+EYIKSFLAAIPI+++  D+KKGL++S  LHHRLQ+E HYT+
Sbjct:   671 ESEEQEEEEVVCRGKESCREYIKSFLAAIPIQQVKADMKKGLVSS--LHHRLQIELHYTK 728

Query:   673 LL---KPQEAEFAAGEVT 687
              L   +P   E +A EVT
Sbjct:   729 HLHHHQPNMFESSATEVT 746

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2081511 AT3G11760 "AT3G11760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 267/522 (51%), Positives = 325/522 (62%)

Query:   177 PLTTSPTSGEAVPMGKDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQ-ECCDGKGSDA 235
             P    PT   +V   K+++SA+KAGL+K+KIFT+FVS ++  K    E+      + S++
Sbjct:   196 PSPQQPTETHSVE--KEDVSAIKAGLRKVKIFTEFVSTRKAKKACREEEGRFSSFESSES 253

Query:   236 EYDFVSETDSPDDDARG-NLDMNKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSCNLD- 293
               DF ++ D   ++        +                 AKV+ EDE W+YY     D 
Sbjct:   254 LDDFETDFDEGKEELMSMRKSFSYGPLSYANGVGTSLNCGAKVSDEDEDWVYYSHRKSDV 313

Query:   294 ---CVENSKSLQQTV-------KRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDID 343
                C +   S    V       +R ILPW  RKL FRS K+K EPLLKKD  EEGGDDID
Sbjct:   314 GAGCSDAEDSAAGLVYEASLLPRRSILPWRKRKLSFRSPKSKGEPLLKKDNGEEGGDDID 373

Query:   344 FVRRQLXXXXXXX-FGWXXXXXXXXX--XXXXXXXNDNFSVGCWERKEVISRDGNMKLEA 400
             F RRQL        FG                    D+F++G WE KEVISRDG+MKL+ 
Sbjct:   374 FDRRQLSSDEAHPPFGSKIDEDSSANPRTSFSEFGEDSFAIGSWEEKEVISRDGHMKLQT 433

Query:   401 QVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDNLIREGSLDWRNLCE 460
              VFLASIDQRSERAAGESACTALVAVIA+W Q N   MP KS+FD+LIREGSL+WRNLCE
Sbjct:   434 SVFLASIDQRSERAAGESACTALVAVIADWFQKNGNLMPIKSQFDSLIREGSLEWRNLCE 493

Query:   461 NEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDAMSFDS 520
             NE Y+++FPDKHFDL+TVL+A+I PL V+P  SFVGFFHP+G+   G F FL  AMSFDS
Sbjct:   494 NETYMQKFPDKHFDLDTVLQAKIRPLTVIPGKSFVGFFHPDGMINEGRFEFLQGAMSFDS 553

Query:   521 IWDEIIRC-------GSTD----PSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGCN 569
             IW EII          S D    P +YI+SWNDHFFVLK+E+EAYYIIDTLGERLYEGC+
Sbjct:   554 IWAEIISLEESSANGDSYDDDSPPHVYIVSWNDHFFVLKVEKEAYYIIDTLGERLYEGCD 613

Query:   570 QAYILKFDKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYRGKES 629
             QAY+LKFD    I ++      +EE          A + SE        E   + RGKES
Sbjct:   614 QAYVLKFDHKTVIHKI----LHTEE----------AGSESEP-------ESEILSRGKES 652

Query:   630 CKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYT 671
             CKEYIK+FLAAIPIREL  DIKKGL ++ P+HHRLQ+EFHYT
Sbjct:   653 CKEYIKNFLAAIPIRELQEDIKKGLASTAPVHHRLQIEFHYT 694

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063550 AT2G10560 "AT2G10560" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 128/256 (50%), Positives = 168/256 (65%)

Query:   458 LCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEGLELGG-----NFNFL 512
             +CENEEY  RFPDKHFDLETVL+A++ P+ VVPE +F+GFFH E  +        + +FL
Sbjct:     1 MCENEEYRERFPDKHFDLETVLQAKVRPICVVPERTFIGFFHREKSKEEEEKEDVSLDFL 60

Query:   513 HDAMSFDSIWDEIIRC----GSTDPSIYIISWNDHFFVLKIEQEAYYIIDTLGERLYEGC 568
                MSFDSIW+EI++      +++  IYI+SWNDH+FVL +  +AYYIIDTLGER+YEGC
Sbjct:    61 KGVMSFDSIWEEIMKQEPEESASEHVIYIVSWNDHYFVLLVNHDAYYIIDTLGERVYEGC 120

Query:   569 NQAYILKFDKDATIKRLP---KDTKSSEENSKASDKAALAANPSEGTAVVCRVEEGTVYR 625
             NQAY+LKFD+DA IKRLP   KD K+   + K   K      P        + EE  V R
Sbjct:   121 NQAYVLKFDQDAEIKRLPSVIKDNKADMGSQKQGGKNKYE-QPERSKESEEQGEEVVVCR 179

Query:   626 GKESCKEYIKSFLAAIPIRELHTDIKKGLMASTPLHHRLQVEFHYTRLLKPQEAEFAAGE 685
             GKESC+EYIKSFLAAIPI+++  D+K+GL++S   HHRLQ+E +YT+ L  ++       
Sbjct:   180 GKESCREYIKSFLAAIPIQQVKADMKEGLVSS--FHHRLQIELYYTKHLHHRQPNMFESS 237

Query:   686 VTNDDKPAMQASLAVA 701
              T         S+ VA
Sbjct:   238 TTKVTVSEATVSMTVA 253

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2040060 AT2G25460 "AT2G25460" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
 Identities = 71/143 (49%), Positives = 100/143 (69%)

Query:   384 WERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEM-PTKS 442
             W  K+++SRDG  KL+++V+LASIDQRSE+AAGE+AC A+  V+A+W   NPK + P+ +
Sbjct:   282 WVMKDLVSRDGKSKLKSEVYLASIDQRSEQAAGEAACAAVAVVVAHWFHANPKLINPSGT 341

Query:   443 EFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQICPLFVVPENSFVGFFHPEG 502
              FD+LI +GS  W++LC+ E Y+R FP++HFDLET++ A + P+ V  + SF G F PE 
Sbjct:   342 AFDSLITQGSSLWQSLCDKESYLRLFPNRHFDLETIVSANLRPVRVCTDKSFTGLFSPE- 400

Query:   503 LELGGNFNFLHDAMSFDSIWDEI 525
                   F  L   MSFD IWDE+
Sbjct:   401 -----RFASLDGLMSFDQIWDEL 418

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
pfam10358	142	pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1	2e-06

>gnl|CDD|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 28  FNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQ-DFH- 85
            +I +  N       + +KWK        R      + T     V +G   WN +     
Sbjct: 11  LSIHELQNVPLVNGELFVKWK--------RGDKKGNSGTTSKALVNNGRAVWNEEFSIPC 62

Query: 86  -----YSGHVF-PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIK 136
                  G  F P  L F ++    +G+++ +   G A ++LA+YANS +    ++ 
Sbjct: 63  TLFVDKKGGKFEPKLLTFVVYKVTKKGKKKVL---GKADIDLAEYANSKEPTTRRLL 116

This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	99.66
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	94.87
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	94.09
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	93.46
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	91.02
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	91.0
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	89.72
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	89.68
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	89.03
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	87.66
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	87.63
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	86.86
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	86.1
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	85.0
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	84.9
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	84.71
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	84.13
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	83.9
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	83.52
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	83.4
cd00030	102	C2 C2 domain. The C2 domain was first identified i	83.03
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	82.95
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	82.57
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	80.38

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=99.66  E-value=9.9e-16  Score=135.48  Aligned_cols=131  Identities=29%  Similarity=0.450  Sum_probs=103.8

Q ss_pred             CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc-----c
Q 005345           12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH-----Y   86 (701)
Q Consensus        12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe-----~   86 (701)
                      .+.||++.|.+++|++++..        ...|.|+||+++...+       . -+.+.....++.+.| +|+|.     |
T Consensus         3 ~~~kf~~~l~i~~l~~~p~~--------~~~v~v~wkr~~~~~~-------~-~~t~~~~~~~~~v~w-~e~~~~~~tl~   65 (143)
T PF10358_consen    3 KAVKFQFDLTIHELENLPSS--------NGKVFVKWKRGDKSKG-------S-GTTSRANVKNGKVQW-NEEFSFPCTLY   65 (143)
T ss_pred             ceeeEEEEEEEEEeECcCCC--------CCEEEEEEEECCCCcc-------c-eeeeeeeccccEEEE-eeEEEEEEEEE
Confidence            35799999999999998773        4789999999986543       1 222222345689999 89999     2


Q ss_pred             --c--ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEeeeec
Q 005345           87 --S--GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESR  162 (701)
Q Consensus        87 --k--~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~Elr  162 (701)
                        +  +.|+||++.|+|+.....|.|   ..+|+++|||||||+.+.+ .....+||.-+   ...++.|+|+|++.+++
T Consensus        66 ~~~k~~~~~~K~~~~~v~~~~~~~~k---~~lG~~~inLaey~~~~~~-~~~~~~~l~~~---~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   66 RDKKSKEFQPKELKFSVFEVDGSGKK---KVLGKVSINLAEYANEDEE-PITVRLLLKKC---KKSNATLSISISLSELR  138 (143)
T ss_pred             EcCCCCcEeeEEEEEEEEEecCCCcc---ceEEEEEEEHHHhhCcCCC-cEEEEEeCccC---CCCCcEEEEEEEEEECc
Confidence              2  569999999999998855555   6999999999999999843 67777787766   56779999999999998


Q ss_pred             cchh
Q 005345          163 FAQE  166 (701)
Q Consensus       163 ~~qe  166 (701)
                      ...+
T Consensus       139 ~~~~  142 (143)
T PF10358_consen  139 EDPD  142 (143)
T ss_pred             cCCC
Confidence            7654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=94.87  E-value=0.44  Score=41.23  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccc-cchhhhhhhhhcccccCCCCCCc-eeeecCccccccccccce
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFS-FFGLRRKILMINLTEEGDEVGDG-VVQWNNQDFHYSGHVFPW   93 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~-~l~slrrsvkrN~T~e~~~~~~~-~VeW~~EEFe~k~~F~PW   93 (701)
                      +.++|.|.++.+|..............|.|..-|+.. .-       .+..|+-.  ...+ .-.| +|+|.-.......
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~-------~~~kT~~~--~~~~~~P~w-~e~f~f~~~~~~~   71 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDS-------AKFKTKVV--KNNGFNPVW-NETFEFDVTVPEL   71 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCC-------CcEeeeee--cCCCcCCcc-CCcEEEEEeCCCe
Confidence            5667777799888765310112335667777765542 11       11122210  1122 5789 9998833111111


Q ss_pred             -eEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           94 -ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        94 -evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                       .+.|+|++..+.  +.  .++|.+.+.|.+...-      ...+||.-+.+.......|.+.+++
T Consensus        72 ~~l~~~V~d~~~~--~~--~~iG~~~~~l~~l~~g------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          72 AFLRFVVYDEDSG--DD--DFLGQACLPLDSLRQG------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EEEEEEEEeCCCC--CC--cEeEEEEEEhHHhcCc------eEEEEecCCCCCCCcceeEEEEEEE
Confidence             477888876554  44  5899999999998432      2347888888875556778877765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=94.09  E-value=0.73  Score=43.90  Aligned_cols=107  Identities=12%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             eEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEEEEEEecCC-cCcccceeEEEEEe
Q 005345           40 RLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLN-QGQRQKVTAMGTAT  118 (701)
Q Consensus        40 ~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWevaFtVf~g~n-qg~K~K~~v~Gtas  118 (701)
                      +..++|.--|-+.+    |.+++.|         ...--| +|+|+-.+.-..=+|.|+|+.... .+.+.+-.+||++.
T Consensus        28 ~~Y~~i~Ld~~~va----RT~v~~~---------~~nP~W-~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~   93 (146)
T cd04013          28 RYYCELCLDKTLYA----RTTSKLK---------TDTLFW-GEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVN   93 (146)
T ss_pred             CceEEEEECCEEEE----EEEEEcC---------CCCCcc-eeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEE
Confidence            68899888764422    2233321         225789 999994311112469999985443 33455678999999


Q ss_pred             eehhhhcccccccceeeeeeeeecCCCc--------cCCceeeeEEEeeeecc
Q 005345          119 LNLAKYANSDKEKELQIKVPLTVSGDTI--------EGDPYLCLSFRLIESRF  163 (701)
Q Consensus       119 LNLAEyAS~a~eke~ei~lPLsv~~g~~--------e~~psL~lSlsl~Elr~  163 (701)
                      +-+.+.++-   .+++.=+||.-..+..        ...|.|+|.+.|..+..
T Consensus        94 Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~  143 (146)
T cd04013          94 IPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV  143 (146)
T ss_pred             EEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence            999999853   3688888988777764        66699999999976653

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=93.46  E-value=1.3  Score=39.79  Aligned_cols=119  Identities=15%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccc
Q 005345           13 SRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHV   90 (701)
Q Consensus        13 srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F   90 (701)
                      .|.++|  .|..+.+|+...     .....|.|...|-+..    |..+++  |.        .=.| ||+|.-.  ...
T Consensus         3 ~~~L~V--~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~----kT~v~~--~~--------nP~W-nE~f~f~~~~~~   60 (126)
T cd08400           3 VRSLQL--NVLEAHKLPVKH-----VPHPYCVISLNEVKVA----RTKVRE--GP--------NPVW-SEEFVFDDLPPD   60 (126)
T ss_pred             eeEEEE--EEEEeeCCCCCC-----CCCeeEEEEECCEeEE----EeecCC--CC--------CCcc-CCEEEEecCCCC
Confidence            455444  445889987642     2346677777552221    222332  11        2359 9999833  112


Q ss_pred             cceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCC-CccCCceeeeEEEeee
Q 005345           91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGD-TIEGDPYLCLSFRLIE  160 (701)
Q Consensus        91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g-~~e~~psL~lSlsl~E  160 (701)
                      .. .+.+.|+....   ..+-..||.+++.|+++....   ..+.-.||.-... .....-.|+|+|+|.|
T Consensus        61 ~~-~l~v~v~d~~~---~~~d~~iG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          61 VN-SFTISLSNKAK---RSKDSEIAEVTVQLSKLQNGQ---ETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             cC-EEEEEEEECCC---CCCCCeEEEEEEEHhHccCCC---cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            11 35677776533   234468999999999988743   4566667754432 2344478999999875

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=91.02  E-value=2.7  Score=36.87  Aligned_cols=118  Identities=16%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL   95 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev   95 (701)
                      +++|.|.++.+|.......  ..-..|.|+-.|-+.    .|..+.++ |        -.=.| ||+|.-. ... -=.|
T Consensus         1 ~L~v~v~~a~~L~~~d~~g--~~Dpyv~v~~~~~~~----~kT~~~~~-t--------~nP~W-ne~f~f~v~~~-~~~l   63 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGG--TSDPYVKFKYGGKTV----YKSKTIYK-N--------LNPVW-DEKFTLPIEDV-TQPL   63 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCC--CCCCeEEEEECCEEE----EEeeeccC-C--------CCCcc-ceeEEEEecCC-CCeE
Confidence            3677788999887654211  223455555433111    12122221 1        13479 8999833 111 1357


Q ss_pred             EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      .|.|+.--.. .++  .+||.+.+.|+++...   ...+..+||.-+++ ....-.|+|.+++
T Consensus        64 ~~~v~D~d~~-~~~--~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~-~~~~G~l~l~~~~  119 (121)
T cd04042          64 YIKVFDYDRG-LTD--DFMGSAFVDLSTLELN---KPTEVKLKLEDPNS-DEDLGYISLVVTL  119 (121)
T ss_pred             EEEEEeCCCC-CCC--cceEEEEEEHHHcCCC---CCeEEEEECCCCCC-ccCceEEEEEEEE
Confidence            8888854322 233  5999999999998853   35677778865554 2345688888876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=91.00  E-value=2.2  Score=37.74  Aligned_cols=118  Identities=10%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--cc----cc
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GH----VF   91 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~----F~   91 (701)
                      |+|.|.++.||.....  ....-..|.|+-.+.+     .|..+++         +.-.-.| ||+|...  ..    ..
T Consensus         1 ~~V~V~~A~~L~~~d~--~g~~dpYv~v~l~~~~-----~kT~v~~---------~t~nP~W-ne~f~F~v~~~~~~~~~   63 (126)
T cd08682           1 VQVTVLQARGLLCKGK--SGTNDAYVIIQLGKEK-----YSTSVKE---------KTTSPVW-KEECSFELPGLLSGNGN   63 (126)
T ss_pred             CEEEEEECcCCcCCCC--CcCCCceEEEEECCee-----eeeeeec---------CCCCCEe-CceEEEEecCcccCCCc
Confidence            5788889999976532  1223466777663321     1222222         1124589 8987732  21    23


Q ss_pred             ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCC-ccCCceeeeEE
Q 005345           92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDT-IEGDPYLCLSF  156 (701)
Q Consensus        92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~-~e~~psL~lSl  156 (701)
                      .=.|.|+|+.-..-+ +.  .+||.+.+.|+++..... .....=+||.-..+. .....-|+|++
T Consensus        64 ~~~l~~~v~d~~~~~-~d--~~iG~~~i~l~~l~~~~~-~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          64 RATLQLTVMHRNLLG-LD--KFLGQVSIPLNDLDEDKG-RRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             CCEEEEEEEEccccC-CC--ceeEEEEEEHHHhhccCC-CcccEEEECcCCCCCCccccceEEEEe
Confidence            346889999653222 33  489999999999874322 245556676543332 22345666664

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=89.72  E-value=3.6  Score=38.67  Aligned_cols=123  Identities=11%  Similarity=0.142  Sum_probs=72.5

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      ++|.|.++.+|...+..  ......|.|+.-| +    ..|..+.++-|        -.-.| ||.|+-. ..-..=.|.
T Consensus         2 L~V~Vi~A~~L~~~d~~--g~sDPYV~v~l~~-~----~~kTk~~~~~t--------~nP~W-NE~F~f~v~~~~~~~l~   65 (150)
T cd04019           2 LRVTVIEAQDLVPSDKN--RVPEVFVKAQLGN-Q----VLRTRPSQTRN--------GNPSW-NEELMFVAAEPFEDHLI   65 (150)
T ss_pred             EEEEEEEeECCCCCCCC--CCCCeEEEEEECC-E----EeeeEeccCCC--------CCCcc-cCcEEEEecCccCCeEE
Confidence            45667788888776422  2345677777743 1    11212222112        13589 9999833 111112677


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccc-cceeeeeeeeecCCC------ccCCceeeeEEEee
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE-KELQIKVPLTVSGDT------IEGDPYLCLSFRLI  159 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e-ke~ei~lPLsv~~g~------~e~~psL~lSlsl~  159 (701)
                      |.|+.-..- .++  ..||.+.|+|.++..-... ..++.=+||.-+++.      .-...-|||.|+|-
T Consensus        66 v~V~d~~~~-~~d--d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          66 LSVEDRVGP-NKD--EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEecCC-CCC--CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            888853322 233  5999999999998754221 245666788776642      23458899999984

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=89.68  E-value=5.3  Score=34.98  Aligned_cols=118  Identities=18%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      ..|.|.++.+|......  ......|.|.-.+.+...  .|..+.+| |        -.=.| ||+|... ..-..=.|.
T Consensus         3 ~~V~v~~a~~L~~~~~~--~~~Dpyv~v~~~~~~~~~--~kT~~~~~-t--------~~P~W-ne~f~f~i~~~~~~~L~   68 (126)
T cd04043           3 FTIRIVRAENLKADSSN--GLSDPYVTLVDTNGKRRI--AKTRTIYD-T--------LNPRW-DEEFELEVPAGEPLWIS   68 (126)
T ss_pred             EEEEEEEeECCCCCCCC--CCCCceEEEEECCCCeee--ecccEecC-C--------CCCcc-cceEEEEcCCCCCCEEE
Confidence            34555688888765421  122356667543321111  12223222 1        12359 9999844 111345788


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      |+|+.....+   +-.++|.+.++|++..........+.-+||. +      ..-|+|.|++.
T Consensus        69 i~v~d~d~~~---~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~------~g~i~l~~~~~  121 (126)
T cd04043          69 ATVWDRSFVG---KHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T------QGRLLLRVSME  121 (126)
T ss_pred             EEEEECCCCC---CCceEEEEEEecCHHHcCCCCCCceEEEEcC-C------CCeEEEEEEEe
Confidence            9998664433   4468999999999874332111334445554 2      34566666653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=89.03  E-value=3.8  Score=36.20  Aligned_cols=126  Identities=12%  Similarity=0.052  Sum_probs=71.1

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCcccc--chhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF--FGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE   94 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~--l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe   94 (701)
                      ++|.|.++.+|.......  ..-..|.|...|++..  ....+..+.+| |        -.=.| ||+|... .... =.
T Consensus         2 L~v~Vi~a~~L~~~d~~~--~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t--------~nP~W-ne~f~f~~~~~~-~~   68 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFG--ASDPYVKISLYDPDGNGEIDSVQTKTIKK-T--------LNPKW-NEEFFFRVNPRE-HR   68 (133)
T ss_pred             EEEEEEEeECCCcccCCC--CcCcEEEEEEECCCCCCcccceeeeEEcC-C--------CCCcE-eeEEEEEEcCCC-CE
Confidence            356677888887653211  2234555666566421  11112222222 1        23579 8988844 1111 24


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccc---cceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE---KELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e---ke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      |.|.|+.-...   ++-.+||.+.+.|+++......   --.+.-.||.=+.......-.|+|+++||
T Consensus        69 l~~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          69 LLFEVFDENRL---TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             EEEEEEECCCC---CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            77888854322   2335899999999999875421   11334556764444445568899999885

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=87.66  E-value=6.5  Score=37.95  Aligned_cols=132  Identities=15%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-----cccc-
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-----GHVF-   91 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-----~~F~-   91 (701)
                      ..|+|.+.-|++++........-..|.+-.--|.-.-...|.++++ .|.        .=+| ||.|...     ..|+ 
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~Tl--------nPvf-NE~f~f~I~~~~~~~~R   73 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTN--------SPEY-NESFKLNINRKHRSFQR   73 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCC--------CCcc-cceEEEEeccccchhhh
Confidence            4577778888776654332233345555432232222223444544 222        2379 9999822     2233 


Q ss_pred             ---ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEeeeeccchh
Q 005345           92 ---PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQE  166 (701)
Q Consensus        92 ---PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~Elr~~qe  166 (701)
                         -=-|-|.|++--.-..+.  .+||+|.++|+.+....+   +...+||.  .|.-....-|+|.+.+-|=-+.++
T Consensus        74 ~l~~~~L~~~V~d~~~f~~~D--~~iG~~~i~L~~l~~~~~---~~~~~~L~--~~~k~~Gg~l~v~ir~r~p~~~~~  144 (155)
T cd08690          74 VFKRHGLKFEVYHKGGFLRSD--KLLGTAQVKLEPLETKCE---IHESVDLM--DGRKATGGKLEVKVRLREPLTGKQ  144 (155)
T ss_pred             hccCCcEEEEEEeCCCcccCC--CeeEEEEEEcccccccCc---ceEEEEhh--hCCCCcCCEEEEEEEecCCCccce
Confidence               344889998543222233  489999999999977663   44467765  354455578999988754433333

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=87.63  E-value=5.4  Score=36.89  Aligned_cols=106  Identities=14%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             EEEEEeecCCCCCCC-ChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           19 FTVIQRLEGFNIKQS-DNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        19 ~lvv~rleG~~~~~~-~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      .|.|.++.|+++... +.....-.+|.|+- |++.    .|..+.+|         .-.=.| ||+|.-- .. ....|.
T Consensus         3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~----~rTk~~~~---------~~nP~W-nE~f~f~v~~-~~~~l~   66 (126)
T cd08379           3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKW----VRTRTVED---------SSNPRW-NEQYTWPVYD-PCTVLT   66 (126)
T ss_pred             EEEEEEeECCccccccccCCCCCeeEEEEE-CCEE----eEcCcccC---------CCCCcc-eeEEEEEecC-CCCEEE
Confidence            455669999533322 22223357788876 4431    12222221         123579 9999932 11 124799


Q ss_pred             EEEEecCCcC---cccceeEEEEEeeehhhhcccccccceeeeeeeeecC
Q 005345           97 FTIFNGLNQG---QRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSG  143 (701)
Q Consensus        97 FtVf~g~nqg---~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~  143 (701)
                      |+||+...-+   +..+--+||.+.++|+++..-   ..++..+||.-..
T Consensus        67 v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~  113 (126)
T cd08379          67 VGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLN  113 (126)
T ss_pred             EEEEECCCccccccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCC
Confidence            9999754431   222336899999999997653   3677888987554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=86.86  E-value=2.6  Score=39.77  Aligned_cols=73  Identities=18%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             eeeecCcccc-cc-ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCC-ccCCcee
Q 005345           76 VVQWNNQDFH-YS-GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDT-IEGDPYL  152 (701)
Q Consensus        76 ~VeW~~EEFe-~k-~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~-~e~~psL  152 (701)
                      .-+| ||.|. +- +.-  =.|.|+|+....-|    -.+||++++.|++.....   ..+.-+||.-+.+. ..+.+.|
T Consensus        82 nP~W-nE~F~~~~~~~~--~~l~~~V~d~d~~~----~~~IG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~~~~~~~l  151 (158)
T cd04015          82 NPVW-NESFHIYCAHYA--SHVEFTVKDNDVVG----AQLIGRAYIPVEDLLSGE---PVEGWLPILDSNGKPPKPGAKI  151 (158)
T ss_pred             CCcc-ceEEEEEccCCC--CEEEEEEEeCCCcC----CcEEEEEEEEhHHccCCC---CcceEEECcCCCCCCCCCCCEE
Confidence            4689 99998 22 111  25889998653322    259999999999987532   56677788776554 4456899


Q ss_pred             eeEEEe
Q 005345          153 CLSFRL  158 (701)
Q Consensus       153 ~lSlsl  158 (701)
                      ||+++|
T Consensus       152 ~v~~~f  157 (158)
T cd04015         152 RVSLQF  157 (158)
T ss_pred             EEEEEE
Confidence            999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=86.10  E-value=9.6  Score=33.80  Aligned_cols=119  Identities=13%  Similarity=0.221  Sum_probs=66.8

Q ss_pred             EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccccee
Q 005345           19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVFPWE   94 (701)
Q Consensus        19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~PWe   94 (701)
                      +|.|.++.+|......  ......|.|.-.|.+     .|..+++|         .-.=.| ||.|...    ....--.
T Consensus         3 ~V~vi~A~~L~~~d~~--g~~dpyv~v~~~~~~-----~rT~v~~~---------t~nP~W-ne~f~f~~~~~~~~~~~~   65 (127)
T cd04022           3 VVEVVDAQDLMPKDGQ--GSSSAYVELDFDGQK-----KRTRTKPK---------DLNPVW-NEKLVFNVSDPSRLSNLV   65 (127)
T ss_pred             EEEEEEeeCCCCCCCC--CCcCcEEEEEECCEE-----ecceeEcC---------CCCCcc-ceEEEEEccCHHHccCCe
Confidence            4555588787665321  122456666654321     12222221         113479 8999843    1222357


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |.|+|++--..+.  +-.+||.+.+.|+++..--  .....-+||.-++......--|+|++.|
T Consensus        66 l~~~V~d~~~~~~--~d~~lG~v~i~l~~l~~~~--~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          66 LEVYVYNDRRSGR--RRSFLGRVRISGTSFVPPS--EAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             EEEEEeeCCCCcC--CCCeeeEEEEcHHHcCCCC--CccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            8999997433331  2358999999999998422  1344556777554333344567777665

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=85.00  E-value=13  Score=32.52  Aligned_cols=114  Identities=16%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345           19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF   97 (701)
Q Consensus        19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF   97 (701)
                      .|.|.++.+|.....  .......|.|...+.....  .|..+.+|         ...=.| ||.|... ..-..=.|.|
T Consensus         3 ~V~vi~a~~L~~~~~--~~~~Dpyv~v~~~~~~~~~--~kT~vv~~---------t~nP~W-ne~f~f~i~~~~~~~l~v   68 (119)
T cd04036           3 TVRVLRATNITKGDL--LSTPDCYVELWLPTASDEK--KRTKTIKN---------SINPVW-NETFEFRIQSQVKNVLEL   68 (119)
T ss_pred             EEEEEEeeCCCccCC--CCCCCcEEEEEEcCCCCcc--CccceecC---------CCCCcc-ceEEEEEeCcccCCEEEE
Confidence            566678888876532  1223456777763321110  12122221         123579 8998833 1111124789


Q ss_pred             EEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      +|+.--..  ++  .++|++.++|+++....   .....+||.-.     +.-.|+|.|.|
T Consensus        69 ~v~d~d~~--~~--~~iG~~~~~l~~l~~g~---~~~~~~~L~~~-----~~g~l~~~~~~  117 (119)
T cd04036          69 TVMDEDYV--MD--DHLGTVLFDVSKLKLGE---KVRVTFSLNPQ-----GKEELEVEFLL  117 (119)
T ss_pred             EEEECCCC--CC--cccEEEEEEHHHCCCCC---cEEEEEECCCC-----CCceEEEEEEe
Confidence            99975333  33  48999999999987542   56666676532     24556666655

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=84.90  E-value=7.2  Score=33.61  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCc-cccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL   95 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGP-k~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev   95 (701)
                      +.|.|.++.+|+.... ........|.|+..|. +.    .|..+.+| |        -.=.| ||.|.-. + -.-=.|
T Consensus         4 l~v~v~~a~~L~~~~~-~~~~~dpyv~v~~~~~~~~----~kT~~~~~-~--------~~P~W-ne~~~~~v~-~~~~~l   67 (124)
T cd04044           4 LAVTIKSARGLKGSDI-IGGTVDPYVTFSISNRREL----ARTKVKKD-T--------SNPVW-NETKYILVN-SLTEPL   67 (124)
T ss_pred             EEEEEEcccCCCcccc-cCCCCCCeEEEEECCCCcc----eEeeeecC-C--------CCCcc-eEEEEEEeC-CCCCEE
Confidence            5677788888874321 1112356777777663 11    11122221 1        23579 8888732 2 112358


Q ss_pred             EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      .|.|+.-...+   +-.+||.+.++|+++........  +..+|. +.+.  ....|+|+|.|.
T Consensus        68 ~~~v~d~~~~~---~d~~iG~~~~~l~~l~~~~~~~~--~~~~~~-~~~k--~~G~i~~~l~~~  123 (124)
T cd04044          68 NLTVYDFNDKR---KDKLIGTAEFDLSSLLQNPEQEN--LTKNLL-RNGK--PVGELNYDLRFF  123 (124)
T ss_pred             EEEEEecCCCC---CCceeEEEEEEHHHhccCccccC--cchhhh-cCCc--cceEEEEEEEeC
Confidence            88898654432   33689999999999997664322  333443 2333  347899998874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=84.71  E-value=11  Score=33.82  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345           19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF   97 (701)
Q Consensus        19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF   97 (701)
                      .|.|.++.+|...      ..-.+|.|...+.+     .|..+.+         +.-.=.| ||+|... .....=.|.|
T Consensus         3 ~V~Vi~a~~L~~~------~~Dpyv~v~l~~~~-----~kT~v~~---------~t~nP~W-ne~F~f~~~~~~~~~L~~   61 (121)
T cd08378           3 YVRVVKARGLPAN------SNDPVVEVKLGNYK-----GSTKAIE---------RTSNPEW-NQVFAFSKDRLQGSTLEV   61 (121)
T ss_pred             EEEEEEecCCCcc------cCCCEEEEEECCcc-----ccccccC---------CCCCCcc-ceEEEEEcCCCcCCEEEE
Confidence            4566688888664      22456667663311     1211222         1123579 9999955 2224456889


Q ss_pred             EEEecCCcCcccceeEEEEEeeehhhhccccc--ccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDK--EKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~--eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      +|+.-.+.    +--+||.+.+.|+++.....  ......-.||.-..+ ......|+|+|-|
T Consensus        62 ~v~d~d~~----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~  119 (121)
T cd08378          62 SVWDKDKA----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF  119 (121)
T ss_pred             EEEeCCCC----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence            99865433    34689999999999876431  112334456654443 3445778888765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=84.13  E-value=4.3  Score=35.16  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=60.6

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccc--
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFP--   92 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~P--   92 (701)
                      -|.|+|.|.++.+|...      ..-..|+|+-.|.+.            +|+-.  .+.-.-.| ||.|.......+  
T Consensus         3 ~~~l~V~v~~a~~L~~~------~~dpyv~v~~~~~~~------------kT~~~--~~t~nP~w-ne~f~f~~~~~~~~   61 (111)
T cd04011           3 DFQVRVRVIEARQLVGG------NIDPVVKVEVGGQKK------------YTSVK--KGTNCPFY-NEYFFFNFHESPDE   61 (111)
T ss_pred             cEEEEEEEEEcccCCCC------CCCCEEEEEECCEee------------eeeEE--eccCCCcc-ccEEEEecCCCHHH
Confidence            58999999999998721      123567777644321            22211  11123579 899873311111  


Q ss_pred             ---eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeee
Q 005345           93 ---WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTV  141 (701)
Q Consensus        93 ---WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv  141 (701)
                         =.|.|+|+.-...+ ++  .+||.++++|++.-....-.-...=+||+-
T Consensus        62 l~~~~l~i~V~d~~~~~-~~--~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          62 LFDKIIKISVYDSRSLR-SD--TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             HhcCeEEEEEEcCcccc-cC--CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence               25889998654332 23  589999999999866543222344566654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=83.90  E-value=11  Score=32.65  Aligned_cols=115  Identities=13%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      ++|.|.++.+|......  ......|.|.-.+.+     .|..+..        .+.-.=.| ||+|... ..-..=.|.
T Consensus         3 L~V~v~~A~~L~~~~~~--~~~dpyv~v~~~~~~-----~kT~~~~--------~~~~nP~W-ne~f~f~v~~~~~~~l~   66 (118)
T cd08681           3 LVVVVLKARNLPNKRKL--DKQDPYCVLRIGGVT-----KKTKTDF--------RGGQHPEW-DEELRFEITEDKKPILK   66 (118)
T ss_pred             EEEEEEEccCCCCCCcC--CCCCceEEEEECCCc-----ccccccc--------CCCCCCcc-CceEEEEecCCCCCEEE
Confidence            56777788888765321  223456666654422     1111111        11113579 8988833 111223688


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |.|+.--..+    -.+||.+.++|+++....   ..+.-+||.-++   ...-.|+|.|+|
T Consensus        67 i~v~d~~~~~----~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~---~~~G~i~l~l~f  118 (118)
T cd08681          67 VAVFDDDKRK----PDLIGDTEVDLSPALKEG---EFDDWYELTLKG---RYAGEVYLELTF  118 (118)
T ss_pred             EEEEeCCCCC----CcceEEEEEecHHHhhcC---CCCCcEEeccCC---cEeeEEEEEEEC
Confidence            9999643322    258999999999986643   234445665333   233467777664

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=83.52  E-value=5.9  Score=35.16  Aligned_cols=79  Identities=14%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             eeeecCccccccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCC-CccCCceeee
Q 005345           76 VVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGD-TIEGDPYLCL  154 (701)
Q Consensus        76 ~VeW~~EEFe~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g-~~e~~psL~l  154 (701)
                      .-.| +|+|...-...-=.+.|.|+.--+.+ ++  -.||.+.++|.++......   +..+||.-..+ .......|+|
T Consensus        43 nP~W-ne~f~f~~~~~~~~l~~~v~d~~~~~-~~--~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l  115 (126)
T cd08678          43 NPFW-DEHFLFELSPNSKELLFEVYDNGKKS-DS--KFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITV  115 (126)
T ss_pred             CCcc-CceEEEEeCCCCCEEEEEEEECCCCC-CC--ceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEE
Confidence            3589 89997330001126889999655443 33  4899999999999876533   45678874433 2345688999


Q ss_pred             EEEeeee
Q 005345          155 SFRLIES  161 (701)
Q Consensus       155 Slsl~El  161 (701)
                      .|.|++.
T Consensus       116 ~~~~~~~  122 (126)
T cd08678         116 EFLFMEP  122 (126)
T ss_pred             EEEEecc
Confidence            9999764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=83.40  E-value=21  Score=32.93  Aligned_cols=119  Identities=11%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccce
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPW   93 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PW   93 (701)
                      --.++|.|.+..||......  ...-..|.|...+.+     .|..+.+|         .-.=.| ||.|.-. .....=
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~--g~~DPYv~v~~~~~~-----~kT~vi~~---------t~nP~W-ne~f~f~v~~~~~~   76 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSN--GKSDPYCEVSMGSQE-----HKTKVVSD---------TLNPKW-NSSMQFFVKDLEQD   76 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCC--CCcCcEEEEEECCEe-----eeccccCC---------CCCCcc-CceEEEEecCccCC
Confidence            35678888899998765321  122355666663321     22233332         123579 8888732 111112


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhcc--cccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN--SDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS--~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      .+.|.|+.-...+   +-.+||.+.++|.++..  .+........++|+   +  ....-+||+++|
T Consensus        77 ~l~i~V~D~d~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~--~~~g~i~l~~~~  135 (136)
T cd08375          77 VLCITVFDRDFFS---PDDFLGRTEIRVADILKETKESKGPITKRLLLH---E--VPTGEVVVKLDL  135 (136)
T ss_pred             EEEEEEEECCCCC---CCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c--ccceeEEEEEEe
Confidence            5778888554332   33599999999999886  22233344455553   1  222356666665

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd00030 C2 C2 domain

Probab=83.03  E-value=7.7  Score=29.89  Aligned_cols=88  Identities=11%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345           19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF   97 (701)
Q Consensus        19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF   97 (701)
                      .|.+++..++....  ........|.|.+.+..         ..|..+..    +...-.| ++.|... ..-..-.+.|
T Consensus         2 ~v~i~~~~~l~~~~--~~~~~~~~v~v~~~~~~---------~~~T~~~~----~~~~P~w-~~~~~~~~~~~~~~~l~i   65 (102)
T cd00030           2 RVTVIEARNLPAKD--LNGKSDPYVKVSLGGKQ---------KFKTKVVK----NTLNPVW-NETFEFPVLDPESDTLTV   65 (102)
T ss_pred             EEEEEeeeCCCCcC--CCCCCCcEEEEEeccCc---------eEecceeC----CCCCCcc-cceEEEEccCCCCCEEEE
Confidence            45666777776542  11234677888887611         11111111    1124579 9999855 2225677899


Q ss_pred             EEEecCCcCcccceeEEEEEeeehhhhc
Q 005345           98 TIFNGLNQGQRQKVTAMGTATLNLAKYA  125 (701)
Q Consensus        98 tVf~g~nqg~K~K~~v~GtasLNLAEyA  125 (701)
                      .|++..+.+   +..++|++.++|.+..
T Consensus        66 ~v~~~~~~~---~~~~ig~~~~~l~~l~   90 (102)
T cd00030          66 EVWDKDRFS---KDDFLGEVEIPLSELL   90 (102)
T ss_pred             EEEecCCCC---CCceeEEEEEeHHHhh
Confidence            999877654   4459999999999998

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=82.95  E-value=5.5  Score=35.71  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      +++.|.++.||...... ....-..|.|+-++-+..    +..++++ |.        .-.| ||+|... .. .--.|.
T Consensus         2 l~v~v~~a~~L~~~~~~-~g~sDpYv~v~l~~~~~~----kT~v~~k-t~--------~P~W-nE~F~f~v~~-~~~~l~   65 (121)
T cd08401           2 LKIKIGEAKNLPPRSGP-NKMRDCYCTVNLDQEEVF----RTKTVEK-SL--------CPFF-GEDFYFEIPR-TFRHLS   65 (121)
T ss_pred             eEEEEEEccCCCCCCCC-CCCcCcEEEEEECCccEE----EeeEEEC-CC--------CCcc-CCeEEEEcCC-CCCEEE
Confidence            35667788888765211 111234556655443211    1123321 22        2359 9999833 11 114788


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |.|+....-   .+-..+|.++++|+++....   ..+.-+||.-........--|||+|+|
T Consensus        66 ~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          66 FYIYDRDVL---RRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEECCCC---CCCceEEEEEEEHHHccCCC---CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            999876643   33468999999999998643   356666776543333345567777764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=82.57  E-value=18  Score=31.24  Aligned_cols=115  Identities=12%  Similarity=0.147  Sum_probs=62.2

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH   96 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva   96 (701)
                      ++|.|.+..+|.......  .....|.|+-.+.+     .|..+.+| |        -.=.| +|+|... ... .=.+.
T Consensus         3 l~v~v~~a~~L~~~~~~~--~~dPyv~v~~~~~~-----~~T~~~~~-t--------~nP~W-~e~f~~~~~~~-~~~l~   64 (119)
T cd08377           3 LQVKVIRASGLAAADIGG--KSDPFCVLELVNAR-----LQTHTIYK-T--------LNPEW-NKIFTFPIKDI-HDVLE   64 (119)
T ss_pred             EEEEEEeeeCCCCCCCCC--CCCcEEEEEECCEe-----eecceecC-C--------cCCcc-CcEEEEEecCc-CCEEE
Confidence            445666888887654221  22345555544322     12112221 1        12469 9999843 211 23578


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |+|+...+.   .+-.++|.+.++|+|..... .    .-.+|.-+.......-.|+|++.|
T Consensus        65 ~~v~d~~~~---~~~~~iG~~~~~l~~~~~~~-~----~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          65 VTVYDEDKD---KKPEFLGKVAIPLLSIKNGE-R----KWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEECCCC---CCCceeeEEEEEHHHCCCCC-c----eEEECcccCCCCceeeEEEEEEEe
Confidence            889865443   33458999999999986543 1    233444444333344566666654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=80.38  E-value=8.3  Score=34.10  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             eeeecCcccccc--cc-ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCcee
Q 005345           76 VVQWNNQDFHYS--GH-VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYL  152 (701)
Q Consensus        76 ~VeW~~EEFe~k--~~-F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL  152 (701)
                      .-.| ||+|...  .. -..=.|.|.|+.-...+   +-.++|.+.++|++....   ......+||.-+.+.... ..|
T Consensus        38 nP~W-ne~f~f~~~~~~~~~~~l~~~v~d~~~~~---~d~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~-~~l  109 (127)
T cd08373          38 NPVW-NETFEWPLAGSPDPDESLEIVVKDYEKVG---RNRLIGSATVSLQDLVSE---GLLEVTEPLLDSNGRPTG-ATI  109 (127)
T ss_pred             CCcc-cceEEEEeCCCcCCCCEEEEEEEECCCCC---CCceEEEEEEEhhHcccC---CceEEEEeCcCCCCCccc-EEE
Confidence            4689 8999843  22 23456788888653332   235899999999999864   356777888655554433 589


Q ss_pred             eeEEEeeeecc
Q 005345          153 CLSFRLIESRF  163 (701)
Q Consensus       153 ~lSlsl~Elr~  163 (701)
                      +|++++.+...
T Consensus       110 ~l~~~~~~~~~  120 (127)
T cd08373         110 SLEVSYQPPDG  120 (127)
T ss_pred             EEEEEEeCCCC
Confidence            99999876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 88/591 (14%), Positives = 165/591 (27%), Gaps = 178/591 (30%)

Query: 192 KDELSAVKAGLQKMKIFTDFVSRKRRAKKTCTEQECCDGKGSDAEYDFVSETDSPD---- 247
           KD     K+ L K +     +  K     T         K  +    FV E    +    
Sbjct: 36  KDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 248 ------------------DDARGNLDMNKE---KAIVQRSFSYETLASAKVNLEDEGWIY 286
                              + R  L  + +   K  V R   Y  L  A + L     + 
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 287 Y-------RSCNLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGG 339
                   ++     V  S  +Q  +   I  W    L  ++  + E  +L+        
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-W----LNLKNCNSPET-VLEM------- 201

Query: 340 DDIDFVRRQLSSSDDSSFGWRSEGSTTSRSSFSEFGN------------------DN--- 378
                  ++L    D ++  RS+ S+  +                           N   
Sbjct: 202 ------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 379 ------FSVGCWERKEVISRDGNMKLEAQVFLASIDQRSERAAGESACTAL-----VAVI 427
                 F++ C  +  + +R        QV        +   + +     L      +++
Sbjct: 256 AKAWNAFNLSC--KILLTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 428 ANWLQCNPKEMPTK---------SEFDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETV 478
             +L C P+++P +         S     IR+G   W N      +     DK   L T+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------WKHVNCDK---LTTI 358

Query: 479 LEA---QICP---------LFVVPENSFVGFFHPEG-LELGGNFNFLHDAMSFDSIWDEI 525
           +E+    + P         L V P ++ +    P   L L      +   +    +   +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTILLSL------IWFDVIKSDVMVVV 408

Query: 526 IRCGST-----DPSIYIISWNDHFFVLKIEQ-----------EAYYIIDTL-GERLYEGC 568
            +          P    IS    +  LK++            + Y I  T   + L    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 569 NQAYILKF-----------DKDATIKRLPKDTKSSEENSKASDKAALAANPSEGTAVVCR 617
              Y               ++    + +  D +  E+  +    A  A+     T    +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 618 VEEGTVYRG--KESCKEY------IKSFL---AAIPIRELHTDI-KKGLMA 656
                 Y+    ++  +Y      I  FL       I   +TD+ +  LMA
Sbjct: 529 -----FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 65/500 (13%), Positives = 135/500 (27%), Gaps = 155/500 (31%)

Query: 233 SDAEYDFVSETDSPDDDARGNLDM--NKEKAIVQRSFSYETLASAKVNLEDEGWIYYRSC 290
           S  E D +  +               +K++ +VQ+ F  E L        +  ++     
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLR------INYKFLMSP-- 97

Query: 291 NLDCVENSKSLQQTVKRGILPWSTRKLRFRSRKTKEEPLLKKD--YREEGGDDIDFVRRQ 348
            +   +   S+           +   +  R R   +  +  K    R +       +R+ 
Sbjct: 98  -IKTEQRQPSMM----------TRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQA 143

Query: 349 LSSSDDSSF----GWRSEGSTT-------SRSSFSEFGNDNF--SVGCWERKEVISRDGN 395
           L     +      G    G T        S     +     F  ++      E +     
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----- 198

Query: 396 MKLEA-QVFLASIDQRSERAAGESACTALVAVIANWLQCNPKEMPTKSEFDN--LIREGS 452
             LE  Q  L  ID      +  S+   L     + +Q   + +     ++N  L+    
Sbjct: 199 --LEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLV---- 249

Query: 453 LDWRNLCENEEYIRRFPDKHFDL--------------ETVLEAQICPLFVVPENSFVGFF 498
           L   N+  N +         F+L              + +  A    + +   +      
Sbjct: 250 LL--NVQ-NAKAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLT 299

Query: 499 HPEGLELGGNF-NFLHDAMSFDSIWDEIIRCGSTDP-SIYIISWNDHFFVLKIEQEAYYI 556
             E   L      +L        +  E++   +T+P  + II+ +    +   +   +  
Sbjct: 300 PDEVKSL---LLKYLD--CRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 557 IDTLGE---------------RLYEGCNQAYILKFDKDATIKRLPKDT------KSSEEN 595
            D L                 ++++      +  F   A I   P            + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRL---SV--FPPSAHI---PTILLSLIWFDVIKSD 403

Query: 596 -----SKASDKAALAANPSEGTAVVCRVEEGTVYRGKESCKEYIKSFLAAIPIRELHTDI 650
                +K    + +   P E T                              I  ++ ++
Sbjct: 404 VMVVVNKLHKYSLVEKQPKEST-----------IS-----------------IPSIYLEL 435

Query: 651 KKGLMASTPLHHRLQVEFHY 670
           K  L     LH  + V+ HY
Sbjct: 436 KVKLENEYALHRSI-VD-HY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	95.12
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	94.62
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	93.96
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	93.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	93.39
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	92.88
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	91.43
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	91.08
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	90.6
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	89.47
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	87.59
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	85.9
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	85.8
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	85.73
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	84.49
3b79_A	129	Toxin secretion ATP-binding protein; alpha-beta st	83.83
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	83.55
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	83.15
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	81.96
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	81.31
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	81.25
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	80.05

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=95.12  E-value=0.23  Score=43.01  Aligned_cols=133  Identities=12%  Similarity=0.101  Sum_probs=75.8

Q ss_pred             CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCcccc-chhhhhhhhhcccccCCCCCCceeeecCccccccccc
Q 005345           12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF-FGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHV   90 (701)
Q Consensus        12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~-l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F   90 (701)
                      ......++|.|.++.+|......  ...-..|.|...++... ....|..+.+| |.        .=.| ||+|...-..
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~--------nP~w-ne~f~f~v~~   83 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDIL--GASDPYVRVTLYDPMNGVLTSVQTKTIKK-SL--------NPKW-NEEILFRVHP   83 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC---------CCEEEEEEEEETTTEEEEEEECCCCSS-CS--------SCCC-CEEEEEEECT
T ss_pred             CCCccEEEEEEEEeeCCCCCCCC--CCCCcEEEEEEECCCCccceeeeCccccC-CC--------CCCC-CCEEEEEecC
Confidence            45566788888899999775321  22346677766554321 11122233332 21        3579 8888844111


Q ss_pred             cceeEEEEEEecCCcCcccceeEEEEEeeehhhhccccccc--ce-eeeeeeeecCCCccCCceeeeEEEee
Q 005345           91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEK--EL-QIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~ek--e~-ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      .--.|.|.|+.--. ..+.  -+||.+.++|.++.......  .+ ..-+||.-..+.....-.|+|+|+|+
T Consensus        84 ~~~~l~~~V~d~d~-~~~d--~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           84 QQHRLLFEVFDENR-LTRD--DFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             TTCEEEEEEEECCS-SSCC--EEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCCEEEEEEEECCC-CcCC--CeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            22468899986532 2233  48999999999998765320  11 34567765544445567899998874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.62  E-value=0.43  Score=40.58  Aligned_cols=124  Identities=13%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cc
Q 005345           13 SRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GH   89 (701)
Q Consensus        13 srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~   89 (701)
                      +..-.+.|.|.++.+|.....   ......|.|...|.+     .|..+++| |        -.=.| ||+|...   ..
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~---g~~dpyv~v~~~~~~-----~kT~v~~~-t--------~nP~w-ne~f~f~v~~~~   65 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF---GKPDPIVSVIFKDEK-----KKTKKVDN-E--------LNPVW-NEILEFDLRGIP   65 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS---SCCCEEEEEECSSCE-----EECCCCCS-C--------SSCEE-EEEEEEECSSCC
T ss_pred             CCCcEEEEEEEEeeCCCCCCC---CCCCeEEEEEECCEe-----EEeeeecC-C--------CCCcc-CcEEEEEecccc
Confidence            444567778889999987642   334578888886542     12223221 1        13479 8999833   12


Q ss_pred             c-cceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeee-eeeeecCCCccCCceeeeEEEee
Q 005345           90 V-FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIK-VPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        90 F-~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~-lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      + .--.|.|.|+.--.- .++  .+||.+.+.|.++...... +.... +||.-+.+.. ....|+|+|+|.
T Consensus        66 ~~~~~~l~i~V~d~d~~-~~~--~~lG~~~i~l~~l~~~~~~-~~w~~l~~l~~~~~~~-~~G~l~l~~~~~  132 (140)
T 2dmh_A           66 LDFSSSLGIIVKDFETI-GQN--KLIGTATVALKDLTGDQSR-SLPYKLISLLNEKGQD-TGATIDLVIGYD  132 (140)
T ss_dssp             CCTTCEEEEEEEETTCS-SSC--CCCEEEEEEGGGTCSSSCE-EEEEEEEEEECTTCCE-EEEEEEEEEEEC
T ss_pred             cCCCCEEEEEEEECCCC-CCC--ceEEEEEEEHHHhccCCCc-eeEEeeeeccCCCCCC-CCCEEEEEEEEE
Confidence            2 346788999864332 233  4899999999999665432 44444 5666554432 337888988884

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=93.96  E-value=0.69  Score=39.18  Aligned_cols=125  Identities=14%  Similarity=0.070  Sum_probs=71.2

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccce
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPW   93 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PW   93 (701)
                      ...++|.|.++.+|...+.  ....-..|.|...++...   .|..+.+| |        -.=.| +|.|... ..  +=
T Consensus         4 ~~~L~V~v~~a~~L~~~d~--~g~sDpyv~v~~~~~~~~---~kT~v~~~-t--------~nP~w-ne~f~f~v~~--~~   66 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDF--FRLPDPFAKIVVDGSGQC---HSTDTVKN-T--------LDPKW-NQHYDLYVGK--TD   66 (132)
T ss_dssp             EEEEEEEEEEEESCCCCST--TCCCCEEEEEEETTTCCE---EECCCCSS-C--------SSCEE-EEEEEEEEET--TC
T ss_pred             eEEEEEEEEEeECCCCCCC--CCCcCeEEEEEECCCCce---EECCccCC-C--------CCCCc-cCEEEEEeCC--CC
Confidence            4566777779999876642  122346777777543211   12222221 1        12479 8999843 11  12


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeec--CCCccCCceeeeEEEe
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVS--GDTIEGDPYLCLSFRL  158 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~--~g~~e~~psL~lSlsl  158 (701)
                      .|.|.|+.-...+....--+||.+.+.|+++..........  +||...  .......-.|+|+|+.
T Consensus        67 ~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~--~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           67 SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQR--LDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEE--EECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEE--EeeeecCCCCCCceeEEEEEEEEc
Confidence            38899996544433211248999999999986555433333  566554  3344445677777653

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=93.80  E-value=0.42  Score=42.79  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcccc-chhhhhhhhhcccccCCCCCCceeeecCccccccccccceeE
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF-FGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWEL   95 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~-l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWev   95 (701)
                      .++|.|.++.+|......  ...-..|.|...+++.. ....|..+++| |        -.=.| +|.|...-....=.|
T Consensus         9 ~L~V~v~~a~~L~~~d~~--g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t--------~nP~W-ne~f~f~v~~~~~~L   76 (176)
T 3m7f_B            9 VVRVKVIAGIGLAKKDIL--GASDPYVRVTLYDPMSGILTSVQTKTIKK-S--------LNPKW-NEEILFRVLPQRHRI   76 (176)
T ss_dssp             EEEEEEEEEESCC---CC--CCCCEEEEEEEEETTTEEEEEEECCCCSS-C--------SSCEE-EEEEEEEECTTTCEE
T ss_pred             EEEEEEEEeeCCCCcCCC--CCcCcEEEEEEECCCCCcccceeCceECC-C--------CCCcc-cceEEEEEcCCCCEE
Confidence            455566689998765421  12346777777666532 11123333332 1        13579 898884411112368


Q ss_pred             EEEEEecCCcCcccceeEEEEEeeehhhhccccccccee---eeeeeeecCCCccCCceeeeEEEeeee
Q 005345           96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQ---IKVPLTVSGDTIEGDPYLCLSFRLIES  161 (701)
Q Consensus        96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~e---i~lPLsv~~g~~e~~psL~lSlsl~El  161 (701)
                      .|.||.--.- .+.  -+||.+.+.|+++......-+..   .-+||....+.....-.|+|+|+|+-.
T Consensus        77 ~~~V~d~d~~-~~d--~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           77 LFEVFDENRL-TRD--DFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EEEEEECC-----C--EEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             EEEEEECCCC-CCC--cEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            8999954322 233  48999999999997764321111   346776655544556789999999765

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=93.39  E-value=1.3  Score=38.15  Aligned_cols=120  Identities=12%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEE
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELH   96 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWeva   96 (701)
                      .++|.|.++.||...+..  ...-..|.|...+.+     .|..+.+|         .-.=.| +|+|...-....=.|.
T Consensus        18 ~L~V~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~-----~kT~~~~~---------t~nP~W-ne~f~f~v~~~~~~l~   80 (148)
T 3kwu_A           18 KISITVVCAQGLQAKDKT--GSSDPYVTVQVGKTK-----KRTKTIYG---------NLNPVW-EENFHFECHNSSDRIK   80 (148)
T ss_dssp             EEEEEEEEEESCCCCSTT--SCCCEEEEEEETTEE-----EECCCCCS---------CSSCEE-EEEEEEEECSTTCEEE
T ss_pred             EEEEEEEeeeCCCCCCCC--CCcCeEEEEEECCEE-----EECCccCC---------CCCCCc-ccEEEEEecCCCCEEE
Confidence            455556688898776421  223456666663321     12222221         113479 8888843111124688


Q ss_pred             EEEEecCCc--------CcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           97 FTIFNGLNQ--------GQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        97 FtVf~g~nq--------g~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |+|+.--..        ....+-.+||.+.++|.++..     ..+.-+||.-..+.....-.|+|+|+|
T Consensus        81 ~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~w~~L~~~~~~~~~~G~i~l~l~~  145 (148)
T 3kwu_A           81 VRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-----EMDVWYNLDKRTDKSAVSGAIRLHISV  145 (148)
T ss_dssp             EEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS-----EEEEEEECBCSSTTCCCCCEEEEEEEE
T ss_pred             EEEEECCCCccccccccccCCCCccEEEEEEEHHHCcC-----CCCEEEEcccCCCCCCCceEEEEEEEE
Confidence            999964331        112344689999999999832     344556777555544455678888876

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=92.88  E-value=0.86  Score=38.61  Aligned_cols=119  Identities=10%  Similarity=0.052  Sum_probs=73.0

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccce
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPW   93 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PW   93 (701)
                      .-.+.|.|.++.+|.....  .......|.|+..|.+     .|..+.+| |.        .=.| +|+|.-. .. ..-
T Consensus        12 ~~~L~v~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~-----~kT~~~~~-t~--------nP~w-ne~f~f~~~~-~~~   73 (133)
T 2ep6_A           12 VGILQVKVLKAADLLAADF--SGKSDPFCLLELGNDR-----LQTHTVYK-NL--------NPEW-NKVFTFPIKD-IHD   73 (133)
T ss_dssp             SEEEEEEEEEEESCCCSSS--SSCCCEEEEEEETTEE-----EECCCCSS-CS--------SCCC-CEEEEEEESC-TTC
T ss_pred             ceEEEEEEEeeECCCCCCC--CCCcCeEEEEEECCEE-----EEeeeecC-CC--------CCcc-ccEEEEEecC-CCC
Confidence            4456666779999887542  1223567778775542     12223332 21        3479 8989833 11 124


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      .|.|.|+.--.-   .+--+||.+.++|.++....     +.-+||.-+.+.....-.|+|+++|+
T Consensus        74 ~l~i~V~d~d~~---~~~~~lG~~~i~l~~l~~~~-----~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           74 VLEVTVFDEDGD---KPPDFLGKVAIPLLSIRDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEEEEEEEETT---EEEEECCBCEEEGGGCCSSC-----CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEEECCCC---CCCCeeEEEEEEHHHccCCC-----ceEEEeecCCCCCccceEEEEEEEEE
Confidence            688999854322   23358999999999986422     24567776665545667888888874

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=91.43  E-value=0.72  Score=39.41  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----ccc
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHV   90 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F   90 (701)
                      ...+.|.|.++.+|.....  .......|.|...+........|..+++| |        -.-.| +|.|...    ...
T Consensus        28 ~~~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t--------~nP~w-ne~f~f~~~~~~~~   95 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDS--NGLADPYVKLHLLPGASKSNKLRTKTLRN-T--------RNPVW-NETLQYHGITEEDM   95 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCT--TSCCCEEEEEEEESCCSGGGEEECCCCCS-C--------SSCEE-EEEEEEESCCHHHH
T ss_pred             CCEEEEEEEEecCCCCCCC--CCCCCCEEEEEEEcCCCCcceeeCCcCCC-C--------CCCcC-cCEEEEcccCHHHc
Confidence            4456677779999887642  12235677787753222111112223332 2        23579 8899843    122


Q ss_pred             cceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeec
Q 005345           91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVS  142 (701)
Q Consensus        91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~  142 (701)
                      .--.|.|+|+.--.- .++  -+||.+.++|.++....   ..+..+||.-|
T Consensus        96 ~~~~l~i~V~d~d~~-~~d--~~iG~~~i~l~~l~~~~---~~~~~~~L~~p  141 (142)
T 2chd_A           96 QRKTLRISVCDEDKF-GHN--EFIGETRFSLKKLKANQ---RKNFNICLERV  141 (142)
T ss_dssp             HHCEEEEEEEEECTT-SCE--EEEEEEEEEGGGCCTTC---CEEEEEECBCC
T ss_pred             cCCEEEEEEEECCCC-CCC--cEEEEEEEEHHHcCCCC---ccEEEEecccC
Confidence            236899999954322 223  48999999999987544   45566666543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=91.08  E-value=1.3  Score=40.48  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             ceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccc
Q 005345           14 RNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFP   92 (701)
Q Consensus        14 rKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~P   92 (701)
                      -...++|.|.++.+|.....  ..+.-..|.|...|.+     .|..+++| |        -.=.| ||+|... .  ..
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~--~~~sDPYv~v~~~~~~-----~kT~v~~~-t--------lnP~W-ne~f~f~v~--~~   94 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKN--WFGPSPYVEVTVDGQS-----KKTEKCNN-T--------NSPKW-KQPLTVIVT--PV   94 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC----CCCCCEEEEEEETTEE-----EECCCCSS-C--------SSCEE-EEEEEEEEC--TT
T ss_pred             CceEEEEEEEEeECCCCccc--CCCCCeEEEEEECCEE-----eEccccCC-C--------CCCeE-CCEEEEEeC--CC
Confidence            34567777779888873321  1124567778775511     12223321 1        13479 8999844 2  14


Q ss_pred             eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccc--cceeeeeeeeecCCCccCCceeeeEEEeeee
Q 005345           93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE--KELQIKVPLTVSGDTIEGDPYLCLSFRLIES  161 (701)
Q Consensus        93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e--ke~ei~lPLsv~~g~~e~~psL~lSlsl~El  161 (701)
                      -.|.|.|+.--.- .+.  -+||.+.+.|.++......  .++++-++|.-..+.....-.|+|+|+++.+
T Consensus        95 ~~L~~~V~D~d~~-~~d--d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A           95 SKLHFRVWSHQTL-KSD--VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CEEEEEEEECCSS-SCC--EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CEEEEEEEECCCC-CCC--ceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            5688899854322 233  4899999999999764422  2346677777764444445678888888755

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=90.60  E-value=0.53  Score=39.84  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE   94 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe   94 (701)
                      -.+.|.|.++.+|......  ...-..|.|+..+.+     .|..+.++-        .-.=.| +|+|... .. ..-.
T Consensus        10 ~~L~v~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~-----~kT~~~~~~--------~~nP~W-ne~f~f~v~~-~~~~   72 (136)
T 1wfj_A           10 GTLEVVLVSAKGLEDADFL--NNMDPYVQLTCRTQD-----QKSNVAEGM--------GTTPEW-NETFIFTVSE-GTTE   72 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSS--CSSCCCEEEESSSCE-----EECCCCTTC--------CSSCEE-EEEEEEEEES-SCCE
T ss_pred             EEEEEEEEeccCCCCcccC--CCcCceEEEEECCcc-----ceeEeccCC--------CCCCcc-CcEEEEEECC-CCCE
Confidence            3455666688888775421  123456777775542     122222211        123589 8999844 11 3347


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      |.|.|+.-- ...+.  .+||.+.++|.++.....  ..+.-+||. +.+.  ..-.|+|+|++.
T Consensus        73 l~~~V~d~~-~~~~d--~~lG~~~i~l~~l~~~~~--~~~~w~~L~-~~~~--~~G~i~l~l~~~  129 (136)
T 1wfj_A           73 LKAKIFDKD-VGTED--DAVGEATIPLEPVFVEGS--IPPTAYNVV-KDEE--YKGEIWVALSFK  129 (136)
T ss_dssp             EEEEECCSS-SCTTT--CCSEEEEEESHHHHHHSE--EEEEEEEEE-ETTE--EEEEEEEEEEEE
T ss_pred             EEEEEEECC-CCCCC--ceEEEEEEEHHHhccCCC--CCcEEEEee-cCCc--cCEEEEEEEEEE
Confidence            888888542 22233  489999999999954332  234456666 4332  346788888874

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=89.47  E-value=3.4  Score=35.25  Aligned_cols=114  Identities=8%  Similarity=0.050  Sum_probs=66.5

Q ss_pred             EEEEEEEeecCCCCCCCChhhh-----------ceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc
Q 005345           17 EAFTVIQRLEGFNIKQSDNEAR-----------QRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH   85 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~-----------~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe   85 (701)
                      .++|.|.++.+|...+  ...+           .-..|.|...+.+..    |..++++ |.        .=.| ||+|+
T Consensus         7 ~L~v~v~~a~~L~~~d--~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~----~T~~~~~-t~--------nP~W-nE~f~   70 (136)
T 1gmi_A            7 LLKIKICEAVSLKPTA--WSLRDAVGPRPQTFLLDPYIALNVDDSRIG----QTATKQK-TN--------SPAW-HDEFV   70 (136)
T ss_dssp             EEEEEEEEEESCCCCH--HHHCC-CCSSCCCCCCCEEEEEEETTEEEE----ECCCCSS-CS--------SCEE-EEEEE
T ss_pred             EEEEEEEeCcCCCCcc--cccccccccccCCcCcCcEEEEEECCeEee----eeeEECC-Cc--------CCcc-CCEEE
Confidence            3556666888887653  1111           346666666432211    2223321 21        2479 99999


Q ss_pred             ccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           86 YSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        86 ~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      .. +-.+-.|.|+|+.--. ..+.  -+||.+.+.|+++...... .++.-++|.       +.-.|+|.|+|
T Consensus        71 f~-v~~~~~L~~~V~d~d~-~~~d--d~iG~~~i~l~~l~~~~~~-~~~~w~~L~-------~~G~i~l~l~~  131 (136)
T 1gmi_A           71 TD-VCNGRKIELAVFHDAP-IGYD--DFVANCTIQFEELLQNGSR-HFEDWIDLE-------PEGKVYVIIDL  131 (136)
T ss_dssp             EE-EEEECEEEEEEEECCS-SSSC--EEEEEEEEEHHHHTSTTCS-EEEEEEECB-------SSCEEEEEEEE
T ss_pred             EE-ecCCCEEEEEEEeCCC-CCCC--CEEEEEEEEHHHhcccCCC-CccEEEEcC-------CCeEEEEEEEE
Confidence            44 1123678899996432 2233  4899999999999875432 345555543       34578888877

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=87.59  E-value=3.2  Score=38.06  Aligned_cols=117  Identities=10%  Similarity=0.022  Sum_probs=67.5

Q ss_pred             EEEEEEEeecCCCCCCCCh--------hhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccc
Q 005345           17 EAFTVIQRLEGFNIKQSDN--------EARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSG   88 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~--------~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~   88 (701)
                      .++|.|.++.+|...+...        ....-.+|.|+..+.+..    |..++++ |.        .=.| ||+|+.. 
T Consensus        30 ~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~----kT~v~~k-tl--------nP~W-NE~F~f~-   94 (157)
T 2fk9_A           30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG----QTSTKQK-TN--------KPTY-NEEFCAN-   94 (157)
T ss_dssp             EEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEE----ECCCCSS-CS--------SCEE-EEEEEEE-
T ss_pred             EEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeE----EeeecCC-CC--------CCcc-CcEEEEE-
Confidence            4556666888886642100        011356777877543211    2223221 22        2379 9999944 


Q ss_pred             cccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc-cccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           89 HVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD-KEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        89 ~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a-~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      +-.+=.|.|+||..-.-   ++--+||.++++|.++.... ....++.-+||.       +.--|+|.|.|
T Consensus        95 v~~~~~L~~~V~D~d~~---~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-------~~G~i~l~l~~  155 (157)
T 2fk9_A           95 VTDGGHLELAVFHETPL---GYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-------PEGKVFVVITL  155 (157)
T ss_dssp             EEEECEEEEEEEECCSS---SSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-------SSCEEEEEEEE
T ss_pred             cCCCCEEEEEEEECCCC---CCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-------CCcEEEEEEEE
Confidence            11123789999963222   22348999999999998752 113566667773       35677777766

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=85.90  E-value=3.7  Score=35.48  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccccceeE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPWEL   95 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PWev   95 (701)
                      +.|.|.++.+|...+.  ....-..|.|...+........|..+.+| |.        .-.| +|+|...  ..-..-.|
T Consensus        33 L~v~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~--------nP~w-ne~f~f~v~~~~~~~~L  100 (149)
T 1a25_A           33 LIVVVRDAKNLVPMDP--NGLSDPYVKLKLIPDPKSESKQKTKTIKC-SL--------NPEW-NETFRFQLKESDKDRRL  100 (149)
T ss_dssp             EEEEEEEEESCCCCST--TSCCCEEEEEEEESCTTCSSCEECCCCSS-CS--------SCEE-EEEEEEECCSGGGGCEE
T ss_pred             EEEEEEEeeCCCCCCC--CCCcCeEEEEEEECCCCCcceEecceeCC-CC--------CCcC-CcEEEEEeccccCCCEE
Confidence            5666668888877642  12235677777754321111122233332 22        3579 8999844  11123469


Q ss_pred             EEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345           96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANS  127 (701)
Q Consensus        96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~  127 (701)
                      .|+|+.--.- .+.  -+||.+.+.|.++...
T Consensus       101 ~i~V~d~d~~-~~~--~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A          101 SVEIWDWDLT-SRN--DFMGSLSFGISELQKA  129 (149)
T ss_dssp             EEEEEECCSS-SCC--EEEEEEEEEHHHHTTC
T ss_pred             EEEEEECCCC-CCC--CEEEEEEEEHHHhCcC
Confidence            9999954322 223  4899999999998754

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=85.80  E-value=6.8  Score=32.45  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             EEEEEEEeecCCCCCCC-ChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345           17 EAFTVIQRLEGFNIKQS-DNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE   94 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~-~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe   94 (701)
                      .++|.|.++.+|..... +.....-..|.|+..|.+...  .|..+++| |.        .=.| +|+|... ..-..-.
T Consensus         4 ~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~--~kT~v~~~-t~--------nP~w-ne~f~f~v~~~~~~~   71 (126)
T 1rlw_A            4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSR--KRTRHFNN-DI--------NPVW-NETFEFILDPNQENV   71 (126)
T ss_dssp             EEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCC--EECCCCTT-CS--------SCEE-EEEEEEEECTTSCCE
T ss_pred             EEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCce--EEccccCC-CC--------CCcc-cceEEEEecCCCCCE
Confidence            35566669999876421 111223578888886643111  12223332 21        2479 8999844 1122346


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      |.|.|+.--. . ++  -+||.+.+.|.++...   ...+.-+||.-       ...+.|.|+|.
T Consensus        72 l~i~V~d~d~-~-~~--~~iG~~~i~l~~l~~~---~~~~~~~~L~~-------~~~g~i~~~le  122 (126)
T 1rlw_A           72 LEITLMDANY-V-MD--ETLGTATFTVSSMKVG---EKKEVPFIFNQ-------VTEMVLEMSLE  122 (126)
T ss_dssp             EEEEEEECCS-S-CC--EEEEEEEEEGGGSCTT---CEEEEEEEETT-------TEEEEEEEEEE
T ss_pred             EEEEEEECCC-C-CC--ceeEEEEEEHHHccCC---CcEEEEEEcCC-------CceEEEEEEEE
Confidence            8899996432 2 33  4899999999998633   24556666641       34555555553

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=85.73  E-value=2.7  Score=37.67  Aligned_cols=110  Identities=11%  Similarity=0.026  Sum_probs=62.0

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEE
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELH   96 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWeva   96 (701)
                      .+.|.|.++.+|...+. .....-..|.|...+........|..+++| |        -.=.| ||.|...-...--.|.
T Consensus        31 ~L~V~v~~a~~L~~~d~-~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t--------~nP~w-ne~f~f~v~~~~~~L~   99 (171)
T 2q3x_A           31 QLEVEVIRARSLTQKPG-SKSTPAPYVKVYLLENGACIAKKKTRIARK-T--------LDPLY-QQSLVFDESPQGKVLQ   99 (171)
T ss_dssp             EEEEEEEEEESCCCCC----CCCEEEEEEEEEETTEEEEEEECCCCCS-C--------SSCEE-EEEEECSSCCTTEEEE
T ss_pred             EEEEEEEEeeCCCCCCc-CCCCCCceEEEEEECCCccccceeCccCCC-C--------CCCCC-CcEEEEEecCCCCEEE
Confidence            46667778888877531 012234667776643221111122233332 1        13479 8988854222346788


Q ss_pred             EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeec
Q 005345           97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVS  142 (701)
Q Consensus        97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~  142 (701)
                      |+|+++.+...++.  +||.+.+.|+++....   ..+.-.||.-.
T Consensus       100 ~~V~~d~d~~~~d~--~iG~~~i~l~~l~~~~---~~~~W~~L~~~  140 (171)
T 2q3x_A          100 VIVWGDYGRMDHKC--FMGVAQILLEELDLSS---MVIGWYKLFPP  140 (171)
T ss_dssp             EEEEEECSTTCSSE--EEEEEEECGGGSCTTS---CEEEEEECBCG
T ss_pred             EEEEEcCCCCCCCC--EEEEEEEEHHHcccCC---CcceeEECCCc
Confidence            99996555544444  8999999999986422   34445555443

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=84.49  E-value=2.9  Score=35.24  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccc
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVF   91 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~   91 (701)
                      ..+.|.|.++.+|...+..  ...-..|.|...+........|..+++| |.        .-.| ||.|...    ....
T Consensus        21 ~~L~v~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~--------nP~w-ne~f~f~~~~~~~~~   88 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDG--RPRNPYVKIYFLPDRSDKNKRRTKTVKK-TL--------EPKW-NQTFIYSPVHRREFR   88 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSS--CCCCEEEECCCSSCCSSSSCCBCCCCSS-CS--------SCCC-CCCCEECSCCTTGGG
T ss_pred             CEEEEEEEEccCCCCcCCC--CCCCCEEEEEEecCCCCCcceeCccccC-CC--------CCcc-ccEEEEccCCHHHhc
Confidence            3566667799888775421  2235677777643222111122233332 22        2479 8999843    2334


Q ss_pred             ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeee
Q 005345           92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTV  141 (701)
Q Consensus        92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv  141 (701)
                      .-.|.|+|+.--..+. .+-.+||.+.++|+++...    ..+.-+||.-
T Consensus        89 ~~~l~i~V~d~d~~~~-~~~~~lG~~~i~l~~l~~~----~~~~W~~L~~  133 (141)
T 1v27_A           89 ERMLEITLWDQARVRE-EESEFLGEILIELETALLD----DEPHWYKLQT  133 (141)
T ss_dssp             TCEEEEEEEEBCSSSS-CCBCCCEEEEEEGGGCCCS----SEEEEEECBC
T ss_pred             CCEEEEEEEECCCCcC-CCCceEEEEEEEccccCCC----CCCceEECcc
Confidence            5789999996544332 2235899999999997542    2444455543

>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.83  E-value=0.81  Score=38.57  Aligned_cols=25  Identities=20%  Similarity=0.123  Sum_probs=20.2

Q ss_pred             EEEEecC-eeEEE-EEece--EEEEeccc
Q 005345          536 YIISWND-HFFVL-KIEQE--AYYIIDTL  560 (701)
Q Consensus       536 YIVSWND-HFFVL-Kve~d--ayYIIDTL  560 (701)
                      .|+-||| ||.|| ++..+  .++|.|..
T Consensus        72 ~I~~~~~~h~vVl~~~~~~~~~~~i~dp~  100 (129)
T 3b79_A           72 AILVLKGGDSCVLNSINMETREAEVTTLE  100 (129)
T ss_dssp             EEEEEGGGEEEEEEEEETTTTEEEEECTT
T ss_pred             EEEEEcCCCEEEEEEEcCCCceEEEEccC
Confidence            4677886 99988 78888  89999964

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=83.55  E-value=6.5  Score=36.87  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             CCCcee--EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc---
Q 005345           11 HASRNY--EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH---   85 (701)
Q Consensus        11 ~~srKf--~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe---   85 (701)
                      +..|.-  -.+|+|+++.||+..       .--++.|-.+|-|           . .|+-..-+ .....| ||-|+   
T Consensus        14 ~~~~~~~msL~V~l~~a~~Lpg~-------~Dp~akv~FRg~k-----------~-kTkvi~~~-~~npvf-nE~F~wpl   72 (144)
T 3l9b_A           14 LVPRGSHMALIVHLKTVSELRGR-------ADRIAKVTFRGQS-----------F-YSRVLENC-EDVADF-DETFRWPV   72 (144)
T ss_dssp             -----CCEEEEEEEEEEESCCSC-------EEEEEEEEETTEE-----------E-ECCCEEEE-CSCEEE-EEEEEEEE
T ss_pred             cccCCCcEEEEEEEEEecCCCCC-------CCCeEEEEEeccc-----------e-eeEEeccC-CCCceE-cceEEecC
Confidence            444543  356666899999742       1244555555522           1 12210001 124569 88888   


Q ss_pred             ccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           86 YSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        86 ~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      +...-.-=.|.+.|++=..-+ ++|  +||++.+.|.+.+...   .+++..||.-.+..+-+ .+|+++|+.
T Consensus        73 ~~~ld~~e~L~v~V~d~~~v~-~nr--lIG~~~i~Lq~lv~~~---~l~l~~~LvD~n~~~~~-a~I~l~l~Y  138 (144)
T 3l9b_A           73 ASSIDRNEVLEIQIFNYSKVF-SNK--LIGTFRMVLQKVVEEN---RVEVSDTLIDDNNAIIK-TSLSMEVRY  138 (144)
T ss_dssp             SSCCCTTCEEEEEEEEECTTS-CCE--EEEEEEEESHHHHHHS---EEEEEEEEECTTSCEEE-EEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEEECcccc-CCC--EEEEEEEEhHHhccCC---eEEEeecccCCCCCccc-cEEEEEEEe
Confidence            222223334678888765555 666  7999999999998876   67788888888886654 678877776

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=83.15  E-value=3.7  Score=34.39  Aligned_cols=94  Identities=9%  Similarity=0.044  Sum_probs=55.3

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP   92 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P   92 (701)
                      ..+.|.|.++.+|.....  .......|.|...++.......+..+++|         .-.=.| +|.|...   ..+.-
T Consensus        16 ~~L~v~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~~kT~~~~~---------t~nP~w-ne~f~f~v~~~~l~~   83 (138)
T 3n5a_A           16 NSIIVNIIKARNLKAMDI--GGTSDPYVKVWLMYKDKRVEKKKTVTKKR---------NLNPIF-NESFAFDIPTEKLRE   83 (138)
T ss_dssp             TEEEEEEEEEESCCCCBT--TTBCCEEEEEEEEETTEEEEEEECCCCSS---------CSSCEE-EEEEEEECCGGGGGG
T ss_pred             CeEEEEEEEeeCCCCcCC--CCCcCeEEEEEEEeCCCccceEeCccccC---------CCCCcC-cceEEEECChhhcCc
Confidence            456667779999887642  12235677787765432211112223221         112479 8988843   33334


Q ss_pred             eeEEEEEEecCCcCcccceeEEEEEeeehhhh
Q 005345           93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKY  124 (701)
Q Consensus        93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEy  124 (701)
                      -.|.|+|+.--..+ ++  -+||.+.+.|.+.
T Consensus        84 ~~l~~~V~d~~~~~-~~--~~lG~~~i~l~~~  112 (138)
T 3n5a_A           84 TTIIITVMDKDKLS-RN--DVIGKIYLSWKSG  112 (138)
T ss_dssp             EEEEEEEEECCSSS-CC--EEEEEEEESSSSC
T ss_pred             eEEEEEEEECCCCC-CC--cEEEEEEEccccC
Confidence            56889999643332 33  4899999999863

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=81.96  E-value=3.7  Score=35.48  Aligned_cols=92  Identities=11%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW   93 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW   93 (701)
                      .+.|.|.++.+|.....  ....-..|.|...+........|..+++| |.        .-.| ||.|...   ..+.--
T Consensus        31 ~L~v~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~--------nP~w-ne~f~f~v~~~~l~~~   98 (153)
T 1w15_A           31 TLTVVVLKARHLPKSDV--SGLSDPYVKVNLYHAKKRISKKKTHVKKC-TP--------NAVF-NELFVFDIPCESLEEI   98 (153)
T ss_dssp             EEEEEEEEEESCC--------CCCEEEEEEEEETTEEEEEEECCCCCS-CS--------SEEE-EEEEEEECCSSSSTTE
T ss_pred             EEEEEEEEeECCCCcCC--CCCCCeEEEEEEEeCCeEeceEecCcccC-CC--------CCee-cceEEEECCHHHhCce
Confidence            56667778888876532  12235677777743211111122333332 22        3689 8998843   233346


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAK  123 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAE  123 (701)
                      .|.|+|+.-- ...++  -+||.+.++|.+
T Consensus        99 ~l~v~V~d~d-~~~~~--~~lG~~~i~l~~  125 (153)
T 1w15_A           99 SVEFLVLDSE-RGSRN--EVIGRLVLGATA  125 (153)
T ss_dssp             EEEEEEEECC-TTSCC--EEEEEEEESTTC
T ss_pred             EEEEEEEeCC-CCCCC--cEEEEEEECCCC
Confidence            7889999543 22233  489999999987

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=81.25  E-value=7.3  Score=32.38  Aligned_cols=98  Identities=17%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccc
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVF   91 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~   91 (701)
                      ..+.|.|.++.+|......  ...-..|.|...+........|..+++| |.        .-.| ||.|...    ....
T Consensus        18 ~~L~v~v~~a~~L~~~d~~--~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~--------nP~w-ne~f~f~~~~~~~~~   85 (129)
T 2bwq_A           18 HQLIVTILGAKDLPSREDG--RPRNPYVKIYFLPDRSDKNKRRTKTVKK-TL--------EPKW-NQTFIYSPVHRREFR   85 (129)
T ss_dssp             TEEEEEEEEEESCCCCTTS--CCBCEEEEEEEESSCSGGGEEECCCCSS-BS--------SCEE-EEEEEECSCCGGGGG
T ss_pred             CEEEEEEEEeeCCCCCCCC--CCCCCEEEEEEecCCCCCcceecccccC-CC--------CCcc-ccEEEEccCCHHHhc
Confidence            3456666688888775421  1234666776643222211122233332 21        3479 8999843    2334


Q ss_pred             ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345           92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN  126 (701)
Q Consensus        92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS  126 (701)
                      .-.|.|+|+.--.-+. .+-..||.+.++|++...
T Consensus        86 ~~~l~~~V~d~d~~~~-~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           86 ERMLEITLWDQARVRE-EESEFLGEILIELETALL  119 (129)
T ss_dssp             GCEEEEEEEEC--------CEEEEEEEEEGGGCCC
T ss_pred             CCeEEEEEEECCcCcC-cCCceeEEEEEEccccCC
Confidence            4689999996543332 123589999999999765

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=80.05  E-value=7.1  Score=34.01  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW   93 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW   93 (701)
                      .+.|.|.++.+|.... .  ...-..|.|...+........+..+++| |        -.-.| ||.|...   .... -
T Consensus        28 ~L~V~v~~a~~L~~~d-~--g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t--------~nP~w-ne~f~f~v~~~~~~-~   93 (153)
T 3fbk_A           28 VLLLHIIEGKGLISKQ-P--GTCDPYVKISLIPEDSRLRHQKTQTVPD-C--------RDPAF-HEHFFFPVQEEDDQ-K   93 (153)
T ss_dssp             EEEEEEEEEESCCCCS-S--SCCCEEEEEEEESCSCCTTCEECCCCTT-C--------SSCEE-EEEEEEECCGGGTT-S
T ss_pred             EEEEEEEEeeCCCCCC-C--CCCCEEEEEEEEcCCCCccEEeccccCC-C--------CCCcc-ccEEEEecccHHhC-C
Confidence            4566667888887764 1  2234677777654332222122233331 1        12479 8888733   2221 2


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN  126 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS  126 (701)
                      .|.|+|+.--.-+.++  -+||.+.++|.++..
T Consensus        94 ~L~i~V~d~d~~~~~d--~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A           94 RLLVTVWNRASQSRQS--GLIGCMSFGVKSLLT  124 (153)
T ss_dssp             EEEEEEEECCSSGGGC--EEEEEEEEEHHHHTC
T ss_pred             EEEEEEEeCCCCCCCC--cEEEEEEEEHHHhcC
Confidence            4889999643322223  489999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	96.44
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	95.3
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	92.3
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	90.4
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	89.33
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	88.02
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	86.99
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	84.35
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	80.35

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.016  Score=48.19  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhh-hhhcccccCCCCCCceeeecCcccccc--ccccce
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKI-LMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPW   93 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrs-vkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PW   93 (701)
                      .++|.|.++.+|+....+.....-..|+|.--|+...-...|.+ +++|         .-.=.| ||+|+..  ..-. -
T Consensus         5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~---------~~nP~w-ne~f~f~~~~~~~-~   73 (131)
T d1qasa2           5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN---------GFNPRW-DMEFEFEVTVPDL-A   73 (131)
T ss_dssp             EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSC---------SSSCEE-EEEEEEEESCGGG-C
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecc---------cCCceE-EEEEEEEEEcchh-c
Confidence            35555568888865432222223466777766665222112222 2221         113579 8898833  1111 2


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      .|.|+|+.- +...++  .+||.+.+.|.++-.-      ...+||--+.|..-..++|.|.+++
T Consensus        74 ~L~~~V~D~-d~~~~d--~~iG~~~i~l~~l~~g------~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          74 LVRFMVEDY-DSSSKN--DFIGQSTIPWNSLKQG------YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             EEEEEEEEC-CTTTCC--EEEEEEEEEGGGBCCE------EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             eEEEEEEEe-cCCCCC--cEEEEEEEEEeccCCC------CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            478999854 333333  4899999999987432      2357987777765555677777765

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.052  Score=45.46  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=72.1

Q ss_pred             eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345           16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE   94 (701)
Q Consensus        16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe   94 (701)
                      =++.|.|..+.++.....  -.+.-.+|+|+..|++     .|.+++++ |        -.-.| ||.|.-. .-..  .
T Consensus         6 ~~L~v~v~~A~~~~~~~~--~~~~dpyv~v~~~~~~-----~kT~v~~~-t--------~nP~w-ne~f~f~~~~~~--~   66 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKN--WFGPSPYVEVTVDGQS-----KKTEKCNN-T--------NSPKW-KQPLTVIVTPVS--K   66 (133)
T ss_dssp             EEEEEEEEEEEECCCC----CCCCCEEEEEEETTEE-----EECCCCSS-C--------SSCEE-EEEEEEEECTTC--E
T ss_pred             eEEEEEEEEeECCCcCCC--CCCcCeEEEEEECCeE-----EeeEEEEe-c--------ccEEE-cceEEEEEEecc--e
Confidence            356666668888766532  1234678888885543     12233332 2        23589 8999833 1112  5


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccc--cceeeeeeeeecCCCccCCceeeeEEEeeee
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE--KELQIKVPLTVSGDTIEGDPYLCLSFRLIES  161 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e--ke~ei~lPLsv~~g~~e~~psL~lSlsl~El  161 (701)
                      |.|.|+.- +...++  .+||.+.++|++....-..  .+..+.++|.-+.+.....-.|+|+|+.+.|
T Consensus        67 l~~~V~d~-d~~~~d--~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~~  132 (133)
T d2nq3a1          67 LHFRVWSH-QTLKSD--VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  132 (133)
T ss_dssp             EEEEEEEC-CSSSCC--EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEc-cCCCCC--ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEEc
Confidence            88999864 333333  4899999999998654322  2344444444445555555667777776543

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.43  Score=38.34  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             EEEEEEEeecCCCCCCC-ChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345           17 EAFTVIQRLEGFNIKQS-DNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE   94 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~-~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe   94 (701)
                      +++|.|.++.+|+.... +.-...-..|.|+..|-+..-  .|..+++|         ...-.| +|+|+.. ..-..=.
T Consensus         4 ~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~--~~T~~~~~---------t~nP~w-ne~f~f~i~~~~~~~   71 (126)
T d1rlwa_           4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSR--KRTRHFNN---------DINPVW-NETFEFILDPNQENV   71 (126)
T ss_dssp             EEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCC--EECCCCTT---------CSSCEE-EEEEEEEECTTSCCE
T ss_pred             EEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccce--eEeeecCC---------Ccccee-ceeeeecccCcccCc
Confidence            34444558888876431 111122467888873322211  12222221         123469 8888833 2111223


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      |.|+|+.- +.+ +.  ..||.+.++|+++-..   ...+.-+||.=     .....|+++|.+
T Consensus        72 L~v~V~d~-d~~-~d--~~lG~~~i~L~~l~~~---~~~~~~~~L~~-----~~~g~i~~~l~~  123 (126)
T d1rlwa_          72 LEITLMDA-NYV-MD--ETLGTATFTVSSMKVG---EKKEVPFIFNQ-----VTEMVLEMSLEV  123 (126)
T ss_dssp             EEEEEEEC-CSS-CC--EEEEEEEEEGGGSCTT---CEEEEEEEETT-----TEEEEEEEEEEC
T ss_pred             EEEEEEEC-CCC-CC--CeEEEEEEEHHHccCC---CeEEEEEEccC-----CCeEEEEEEEEE
Confidence            77899864 222 23  4899999999998542   24556666621     223566666665

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.56  Score=37.97  Aligned_cols=115  Identities=11%  Similarity=0.100  Sum_probs=64.6

Q ss_pred             EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccccceeE
Q 005345           18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPWEL   95 (701)
Q Consensus        18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PWev   95 (701)
                      ++|.|.++.||.......  ..-.+|.|+- |+..    .|.++.+| |.        .=.| +|.|.-.  ...  =.|
T Consensus         8 L~V~v~~A~~L~~~d~~g--~~Dpyv~v~~-~~~~----~~T~~~~~-t~--------nP~w-ne~f~f~v~~~~--~~L   68 (126)
T d2ep6a1           8 LQVKVLKAADLLAADFSG--KSDPFCLLEL-GNDR----LQTHTVYK-NL--------NPEW-NKVFTFPIKDIH--DVL   68 (126)
T ss_dssp             EEEEEEEEESCCCSSSSS--CCCEEEEEEE-TTEE----EECCCCSS-CS--------SCCC-CEEEEEEESCTT--CEE
T ss_pred             EEEEEEEeECCCCCCCCC--CcCeEEEEEc-CCeE----EEEEeeCC-ce--------eEEE-EEEEEEEEeccC--cee
Confidence            567778999997764221  1234666655 3321    12223321 21        2369 8999833  211  248


Q ss_pred             EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      .|.||.- +...+  -..||.+.++|+++.....   ..  .+|..........-.|+|.++++
T Consensus        69 ~i~V~d~-~~~~~--d~~lG~~~i~l~~l~~~~~---~~--~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          69 EVTVFDE-DGDKP--PDFLGKVAIPLLSIRDGQP---NC--YVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEEEE-ETTEE--EEECCBCEEEGGGCCSSCC---EE--CCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEc-cCCcC--cceEEEEEEEHHHCCCCCc---eE--EEccccCCCCceeEEEEEEEEEE
Confidence            8999843 22222  3489999999999865432   22  34444433333345788888875

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.33  E-value=1.3  Score=36.55  Aligned_cols=115  Identities=10%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccce
Q 005345           15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPW   93 (701)
Q Consensus        15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PW   93 (701)
                      .+++++.++-++++..+..    ..-..|.|+-+++...-...+.++++ .|.        .-.| ||+|+.. .-  .=
T Consensus         4 ~~~~~~~~~~~~~~~~~~~----~~dPY~~v~l~~~~~~~~~~~t~~~k-kT~--------nP~W-nE~F~~~v~~--~~   67 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDD----ASQPFCAVKMKEALTTDRGKTLVQKK-PTM--------YPEW-KSTFDAHIYE--GR   67 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCC----SCCCEEEEEEEEECCGGGTTBEEECS-CCB--------CCCT-TCEEEEECCT--TC
T ss_pred             eEEEEEEEeecccCCCCCC----CCCCEEEEEEcCccccccceEEEEeC-CCC--------Cccc-ceEEEEEEcc--cc
Confidence            6889999999999877642    12357888888876432111222332 333        2579 8999943 21  12


Q ss_pred             eEEEEEEecCCcCcccceeEEEEEeeehhhhccccc--ccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345           94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDK--EKELQIKVPLTVSGDTIEGDPYLCLSFRLI  159 (701)
Q Consensus        94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~--eke~ei~lPLsv~~g~~e~~psL~lSlsl~  159 (701)
                      .+-|.||.--      + ..+|.+++.|++++....  ....++-++|.       +.-.|+|++.+.
T Consensus        68 ~l~i~V~d~d------d-~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-------~~Gkl~l~v~~f  121 (123)
T d1bdya_          68 VIQIVLMRAA------E-DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLMCVQYF  121 (123)
T ss_dssp             EEEEEEEEET------T-EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-------SSCEEEEEEEEE
T ss_pred             EEEEEEEEcc------c-cccCccEEehhheeeccccCCCcccEEEeCC-------CCEEEEEEEEEe
Confidence            6889999631      2 489999999999976432  22445555553       344577777764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.02  E-value=1.2  Score=36.21  Aligned_cols=95  Identities=12%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--cccccee
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPWE   94 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PWe   94 (701)
                      .++|.|.++.+|+.....  ...-..|.|...+........|.++++| |.        .-.| +|.|...  .....-.
T Consensus        16 ~L~V~V~~a~~L~~~d~~--g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~--------nP~w-ne~f~f~v~~~~~~~~   83 (132)
T d1a25a_          16 VLIVVVRDAKNLVPMDPN--GLSDPYVKLKLIPDPKSESKQKTKTIKC-SL--------NPEW-NETFRFQLKESDKDRR   83 (132)
T ss_dssp             EEEEEEEEEESCCCCSTT--SCCCEEEEEEEESCTTCSSCEECCCCSS-CS--------SCEE-EEEEEEECCSGGGGCE
T ss_pred             EEEEEEEeeeCCCCCCCC--CCcCeEEEEEEccCCCCccccEEeeecC-CC--------CCcc-ceEEEEEeEccccCCE
Confidence            466777799998776421  2234678887754443322222333332 21        2359 8988844  3333447


Q ss_pred             EEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345           95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN  126 (701)
Q Consensus        95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS  126 (701)
                      |.|+|+.- +...++  .+||.+.+.|++...
T Consensus        84 L~i~V~d~-d~~~~d--~~iG~~~i~l~~l~~  112 (132)
T d1a25a_          84 LSVEIWDW-DLTSRN--DFMGSLSFGISELQK  112 (132)
T ss_dssp             EEEEEEEC-CSSSCC--EEEEEEEEEHHHHTT
T ss_pred             EeEEEEec-CCCCCC--cEeEEEEEeHHHcCC
Confidence            99999954 333333  379999999999743

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=86.99  E-value=1.8  Score=35.73  Aligned_cols=115  Identities=6%  Similarity=0.013  Sum_probs=66.0

Q ss_pred             EEEEEEeecCCCCCCC---------ChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccc
Q 005345           18 AFTVIQRLEGFNIKQS---------DNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSG   88 (701)
Q Consensus        18 V~lvv~rleG~~~~~~---------~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~   88 (701)
                      ++|.|.++.||.....         .....--.+|+|+..+.+..    |..+++ .        .-.=.| ||+|.-. 
T Consensus         8 L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~----~T~~~~-~--------t~~P~W-ne~f~f~-   72 (136)
T d1gmia_           8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG----QTATKQ-K--------TNSPAW-HDEFVTD-   72 (136)
T ss_dssp             EEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEE----ECCCCS-S--------CSSCEE-EEEEEEE-
T ss_pred             EEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCc----EeeEEc-C--------CCCccC-ccEEEEE-
Confidence            5666778888876420         00011236888888543311    111211 1        123589 8999822 


Q ss_pred             cccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345           89 HVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL  158 (701)
Q Consensus        89 ~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl  158 (701)
                      +-.+=.|.|+|+.--   .-.+-.++|.+++.|+|+...... ..+.=+||.       +.-.+||.+.|
T Consensus        73 v~~~~~l~i~V~d~~---~~~~d~~iG~~~i~l~~l~~~~~~-~~~~w~~L~-------p~G~v~l~v~~  131 (136)
T d1gmia_          73 VCNGRKIELAVFHDA---PIGYDDFVANCTIQFEELLQNGSR-HFEDWIDLE-------PEGKVYVIIDL  131 (136)
T ss_dssp             EEEECEEEEEEEECC---SSSSCEEEEEEEEEHHHHTSTTCS-EEEEEEECB-------SSCEEEEEEEE
T ss_pred             EecCCceEEEEEEec---CCCCceeEEEEEEEHHHhhhcCCc-ceeEEEeCC-------CCcEEEEEEEE
Confidence            112446889999543   223345899999999998766533 455555663       33446777766

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=1.8  Score=34.75  Aligned_cols=97  Identities=18%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccc
Q 005345           17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVF   91 (701)
Q Consensus        17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~   91 (701)
                      +..|.|.++.+|+.....  ...-..|.|.-- |. ......|.++++ .|        -.-.| ||.|...    .-..
T Consensus        15 ~L~V~V~~a~~L~~~~~~--~~~dpyVkv~l~-~~~~~~~~~kT~~~~-~t--------~~P~w-ne~f~f~~~~~~~l~   81 (125)
T d2bwqa1          15 QLIVTILGAKDLPSREDG--RPRNPYVKIYFL-PDRSDKNKRRTKTVK-KT--------LEPKW-NQTFIYSPVHRREFR   81 (125)
T ss_dssp             EEEEEEEEEESCCCCTTS--CCBCEEEEEEEE-SSCSGGGEEECCCCS-SB--------SSCEE-EEEEEECSCCGGGGG
T ss_pred             EEEEEEEEeECCCCcCCC--CCCCEEEEEEEe-CCCCCccccccCEEc-CC--------CCCEE-ccEEEEeeeChhhcC
Confidence            344455699998765422  222345555442 22 111111222222 12        23679 8988743    2334


Q ss_pred             ceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345           92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS  127 (701)
Q Consensus        92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~  127 (701)
                      --.|.|+|+.--. ..+.+-.+||.+.++|+++...
T Consensus        82 ~~~L~i~v~d~~~-~~~~~~~~iG~~~i~l~~~~~~  116 (125)
T d2bwqa1          82 ERMLEITLWDQAR-VREEESEFLGEILIELETALLD  116 (125)
T ss_dssp             GCEEEEEEEEC--------CEEEEEEEEEGGGCCCS
T ss_pred             CCEEEEEEEECCC-CCCCCCeeEEEEEEEchhcCCC
Confidence            4568899985322 2233335899999999997643

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.35  E-value=13  Score=30.78  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=52.6

Q ss_pred             EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345           19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF   97 (701)
Q Consensus        19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF   97 (701)
                      .|.|+++.+|....     +....|.|+..+.+..     ..+++|         . .=.| ||+|.-. .- ..=.|.|
T Consensus         5 ~V~v~~a~~l~~~~-----~~dpYv~l~~~~~k~~-----T~~~k~---------~-nP~W-ne~f~f~v~~-~~~~L~v   62 (128)
T d2cjta1           5 CVGVKKAKFDGAQE-----KFNTYVTLKVQNVKST-----TIAVRG---------S-QPSW-EQDFMFEINR-LDLGLTV   62 (128)
T ss_dssp             EEEEEEEECSSCGG-----GCEEEEEEEETTEEEE-----CCCEES---------S-SCEE-EEEEEEEECC-CSSEEEE
T ss_pred             EEEEEEEECCCCCC-----CcCeEEEEEeCCEEEE-----EEEecC---------C-CCeE-EEEEEEeecc-ccceEEE
Confidence            45566888886642     3457888888665411     112332         1 2579 8999933 11 1235899


Q ss_pred             EEEecCCcCcccceeEEEEEeeehhhhccccc
Q 005345           98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDK  129 (701)
Q Consensus        98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~  129 (701)
                      +|++- +.. +  -.+||.+.++|++.-...+
T Consensus        63 ~V~d~-~~~-~--d~~lG~~~I~L~~l~~~~~   90 (128)
T d2cjta1          63 EVWNK-GLI-W--DTMVGTVWIPLRTIRQSNE   90 (128)
T ss_dssp             EEEEC-CSS-C--EEEEEEEEEEGGGSCBCSS
T ss_pred             EEEeC-CCc-C--CcceEEEEEEehhhccCCC
Confidence            99963 222 3  3589999999999865443