Citrus Sinensis ID: 005376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
Protein Sequence
MSLEEVALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES
Secondary Structure (PSIPRED)
cccHHHHccccccccHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEcccHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccHHHHHHHHccHHHcccHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccEEcHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccHccHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEccccccccccHHHHHHHHHcccccccccccccccccccccEEEccHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHccccccccEHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccHcHHHHHHHccccEHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSLEEVALGTslyipslmlqgrtsTSYCLVALLKYLIvplplplllplllplcmpvlpplplaphkilslsdysvgsgnskeekldigkfdgtasfgavggtaksfnengqvlpplkpppgrvgstlqgmpplkpppgraeplpheppaslrphppsgpppppppppaprpppapapaprapppppkpgppppppprggpaprppppmpsgskvprpplgqkhssssvgagaegdanapktklkpffwdkvlanpdnsmvWHQIKSGSFQFNEEMIETLFGYseksknekkkgssldtgpqYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTgnrmndgtfrggaqaFKLDTLlklsdvkgvdgktTLLHFVVQEIIRSEGVRAARRAresrsfssvktddlleetsksnetdehYRNLGLQAVSHLSSELENVKKAAaidadsltGTVSKLGHALLKTRDFLNTDmknlgensgfhETLKSFVQNAEGDIMWLLEEEKRIMSLVKStgdyfhgnagkdegLRLFTIVRDFFIMLDKACKqvkdapkkstkslkkegstassssdtpqqpspdlrhrlfpaiterrvedfssdees
Flexible Loop (DISEMBL)
MSLEEVALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYseksknekkkgssldtgpQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKtgnrmndgtfrgGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVqeiirsegvraarraresrsfssvktddlleetsksnetdehyrNLGLQAVSHLSSELENVKKAAaidadsltgtVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACkqvkdapkkstkslkkegstassssdtpqqpspdlrhrlfpaiterrvedfssdees
Low Complexity Region (SEG)
MSLEEVALGTSLYIPSLMLQGRTSTSYCLVAllkylivplplplllplllplcmpvlpplplapHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEppaslrphppsgpppppppppaprpppapapaprapppppkpgppppppprggpaprppppmpsgskvprppLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYseksknekkkgssLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIrsegvraarraresrsfssvKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGstassssdtpqqpspdLRHRLFPAITERRVEDFSSDEES
Disordered region (IsUnstruct)
******ALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDY*************************************************************************************************************************************************************************LKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY******************QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRS**********************************************************AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACK********************************************************
Disordered Region (DISOPRED)
*****VALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLC*************************************************************************************************************************************************************************************************FWDKVLANPDNSMVWHQIKSGSFQFNEEMIET****************************DQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAAR********************SKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTR******************TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ*******************************************************
Disordered Region (DISEMBL)
MSLEEVALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEP**********************************************************************************************NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS**************TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSE*********************************EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACK********************************DLRHRLFPAITERR**********
Disordered Region (DISPRO)
*SLEEVALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSL************************************************************************************************************************************************************************PKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEK***************QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEG*****************************ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK*************************RL*PAITE************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLEEVALGTSLYIPSLMLQGRTSTSYCLVALLKYLIVPLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	699	2.2.26 [Sep-21-2011]
Q94B77	900	Formin-like protein 5 OS=	yes	no	0.805	0.625	0.674	0.0
Q0D5P3	929	Formin-like protein 11 OS	yes	no	0.658	0.495	0.604	1e-160
Q6H7U3	881	Formin-like protein 10 OS	no	no	0.590	0.468	0.605	1e-143
Q6MWG9	906	Formin-like protein 18 OS	no	no	0.579	0.447	0.591	1e-140
Q10Q99	892	Formin-like protein 8 OS=	no	no	0.625	0.489	0.485	1e-111
Q8S0F0	960	Formin-like protein 1 OS=	no	no	0.575	0.418	0.515	1e-111
Q9FJX6	899	Formin-like protein 6 OS=	no	no	0.599	0.466	0.480	1e-107
Q9MA60	884	Formin-like protein 11 OS	no	no	0.605	0.478	0.468	1e-106
Q8H8K7	849	Formin-like protein 4 OS=	no	no	0.566	0.466	0.497	1e-105
O22824	894	Formin-like protein 2 OS=	no	no	0.628	0.491	0.463	1e-100

>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/580 (67%), Positives = 450/580 (77%), Gaps = 17/580 (2%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           R  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A  P P  
Sbjct: 335 RTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPP 390

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          D +APKT
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL---------DDDAPKT 441

Query: 242 KLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTG 299
           KLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK  S     
Sbjct: 442 KLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAAL 501

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
           PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT EEELKL
Sbjct: 502 PQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTPEEELKL 561

Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
           RL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ LEVACKEL
Sbjct: 562 RLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKLEVACKEL 621

Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEI 479
           R SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEI
Sbjct: 622 RGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEI 681

Query: 480 IRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKK 539
           IR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSSELE+VKK
Sbjct: 682 IRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSSELEHVKK 740

Query: 540 AAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           +A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG IM +LE
Sbjct: 741 SANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEGSIMSILE 800

Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 659
           EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  +  +  +K+
Sbjct: 801 EEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRPVRMARKQ 860

Query: 660 GSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 698
           GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 861 GSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro. Seems to play a role in cytokinesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subsp. japonica GN=FH11 PE=2 SV=1

 Score =  566 bits (1458), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/491 (60%), Positives = 365/491 (74%), Gaps = 31/491 (6%)

Query: 203 RPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWH 262
           RPPPP+  G+KV                GA  ++N  KTKLKPFFWDKV ANP  SMVW 
Sbjct: 454 RPPPPLKPGAKV----------------GAVENSNEAKTKLKPFFWDKVTANPARSMVWD 497

Query: 263 QIKSGSFQFNEEMIETLFGY--SEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRA 320
            +KSGSFQFNE+++E LFGY  ++KS + KK  SS D   Q I+I+D KKAQNL+I LRA
Sbjct: 498 HLKSGSFQFNEQLMENLFGYNSTDKSSDTKKDLSSKD-ATQLIRILDPKKAQNLAISLRA 556

Query: 321 LNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALV 380
           L V+ +EVC A+ EG+ELP++LIQTL++ +P+ +EEL+LRL++GEL QLGPAE+FL+ ++
Sbjct: 557 LGVSPQEVCSAVKEGSELPSDLIQTLIRWSPSNDEELRLRLYSGELFQLGPAEQFLRVII 616

Query: 381 DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMN 440
           DIP+ F+RL+ALLFM  L EE S  K+SF  LEVAC+ELRNSRLF+KLLEAVLKTGNRMN
Sbjct: 617 DIPYIFQRLDALLFMANLPEEASNVKQSFATLEVACQELRNSRLFMKLLEAVLKTGNRMN 676

Query: 441 DGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRS-FSS 499
            GTFRGGAQAF+LDTLLKLSDVKG DGKTTLLHFVVQEIIRSEGVRA R A+E  S  SS
Sbjct: 677 VGTFRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGVRAERAAKEQNSGVSS 736

Query: 500 VKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHAL 559
           VKTDDL     KS +T++ Y+ LGL+ +S L  EL++V+KAA +DAD LT +V+ LGH L
Sbjct: 737 VKTDDL---GDKSEQTEDGYKQLGLKVISSLGDELQDVRKAAILDADQLTMSVASLGHKL 793

Query: 560 LKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNA 619
           +KT +FLN DMK+L E+SGFH  L  FVQ ++ DI +LLEEEK++  LVK T DYFHG+A
Sbjct: 794 MKTNEFLNMDMKSLDEDSGFHRKLTHFVQQSQTDITFLLEEEKKMRLLVKDTVDYFHGSA 853

Query: 620 GKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS-TKSLKKEGSTASSSSDTPQQPSPDLR 678
           GKDEGLRLF IVRDF  MLDK CK+VK+A K +  K+  K+ S +  S   P       R
Sbjct: 854 GKDEGLRLFVIVRDFLAMLDKVCKEVKEASKVAPVKAKAKQPSQSLQSFRDP-------R 906

Query: 679 HRLFPAITERR 689
             LFPAI   R
Sbjct: 907 VNLFPAIQHLR 917

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H7U3|FH10_ORYSJ Formin-like protein 10 OS=Oryza sativa subsp. japonica GN=FH10 PE=2 SV=1

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/426 (60%), Positives = 327/426 (76%), Gaps = 13/426 (3%)

Query: 236 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKN--EKKKG 293
            NAP+ KL+PF+WDKVLANPD SM WH IK GSF  NEEMIE LFGY   ++N  + K+ 
Sbjct: 425 VNAPRAKLRPFYWDKVLANPDQSMAWHDIKFGSFHVNEEMIEELFGYGAGNQNNVKDKEI 484

Query: 294 SSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTA 353
           S  D  PQ++ ++D KK+ NL+++ +A+NV  EE+ DAL+EGNELP  L++T+L+M PT 
Sbjct: 485 SIADPSPQHVSLLDVKKSCNLAVVFKAMNVRAEEIHDALVEGNELPRLLLETILRMKPTD 544

Query: 354 EEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILE 413
           EEE KLRL+NG+ SQLG AE+ +KAL+DIPF+F+R+ ALLFM +LQE+ S+ +ESF  LE
Sbjct: 545 EEEQKLRLYNGDCSQLGLAEQVMKALIDIPFAFERIRALLFMSSLQEDASSLRESFLQLE 604

Query: 414 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLH 473
            AC EL++ RLFLKLLEA+LKTGNR+NDGTFRGGA AFKLDTLLKLSDVKG DGKTTLLH
Sbjct: 605 AACGELKH-RLFLKLLEAILKTGNRLNDGTFRGGANAFKLDTLLKLSDVKGADGKTTLLH 663

Query: 474 FVVQEIIRSEGVRAARRARES-RS--FSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHL 530
           FVVQEIIRSEGVR AR A E+ RS  F S   D+  E      E   +Y NLGL+ VS L
Sbjct: 664 FVVQEIIRSEGVREARLAMENGRSPPFPSTSDDNSNESL---QEDGNYYSNLGLKIVSGL 720

Query: 531 SSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNA 590
           S+EL+NVK+ AA+DAD+L+ +V+ L H LL+ ++FLN+DM +L ENSGFH +L+SF+++A
Sbjct: 721 SNELDNVKRVAALDADALSTSVANLRHELLRAKEFLNSDMASLEENSGFHRSLESFIEHA 780

Query: 591 EGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQV----K 646
           E +  +LL+E+KR+  LVK T  YFHGN  KD+G RLF IVRDF +MLDKACK+V    K
Sbjct: 781 ETETNFLLKEDKRLRMLVKRTIRYFHGNDEKDDGFRLFVIVRDFLVMLDKACKEVGASQK 840

Query: 647 DAPKKS 652
            A  KS
Sbjct: 841 KATNKS 846

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6MWG9|FH18_ORYSJ Formin-like protein 18 OS=Oryza sativa subsp. japonica GN=FH18 PE=2 SV=1

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/431 (59%), Positives = 327/431 (75%), Gaps = 26/431 (6%)

Query: 240 KTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY--SEKSKNEKKKGSSLD 297
           K KLKPFFWDKV ANP+ +MVW QIK+GSFQFNEEMIE+LFG   +EK   + KK S  +
Sbjct: 418 KAKLKPFFWDKVTANPNQAMVWDQIKAGSFQFNEEMIESLFGAQSTEKKSTDAKKESGKE 477

Query: 298 TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEEL 357
              Q+++I+D KKAQNL+I L+AL+V+ E+V  A++EG++LP +LIQTL++ +PT++EEL
Sbjct: 478 -ATQFVRILDPKKAQNLAISLKALSVSAEQVRAAVMEGHDLPPDLIQTLVRWSPTSDEEL 536

Query: 358 KLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 417
           +LRL+ GE +QLGPAE+F++A++D+P+ ++RL+ALLFM  L EE +A ++SF  LEVAC+
Sbjct: 537 RLRLYAGEPAQLGPAEQFMRAIIDVPYLYQRLDALLFMAALPEEAAAVEQSFATLEVACE 596

Query: 418 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQ 477
           ELR SRLF KLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKGVDGKTTLLHFVVQ
Sbjct: 597 ELRGSRLFKKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVQ 656

Query: 478 EIIRSEGVRAARRA----RESRSFSSVKTDDLL-----------------EETSKSNETD 516
           EIIRSEGVRAAR A      S   S   +DDL+                 + +S   E D
Sbjct: 657 EIIRSEGVRAARAASGGGGGSSISSISSSDDLILLQSQSSIGSNSGRSSVDASSLEQEQD 716

Query: 517 --EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG 574
             E YR LGL  VS L  +L+NV+KAA+ DAD+LT TV+ LGH L+K  +FL+T M++L 
Sbjct: 717 ETERYRQLGLGVVSSLGDDLQNVRKAASFDADALTITVASLGHRLVKANEFLSTGMRSLE 776

Query: 575 ENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDF 634
           E+SGF   L SFVQ ++  +  LLE+EKR+ SLV++T DYFHG+ GKDEGLRLF +VRDF
Sbjct: 777 EDSGFQRRLASFVQQSQEQVTRLLEDEKRLRSLVRATVDYFHGSTGKDEGLRLFVVVRDF 836

Query: 635 FIMLDKACKQV 645
             +LDK C++V
Sbjct: 837 LGILDKVCREV 847

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/480 (48%), Positives = 303/480 (63%), Gaps = 43/480 (8%)

Query: 186 PKPGPPP-----------PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE- 233
           PKP  PP           P PP G   PR   PMP  +       G         A A+ 
Sbjct: 390 PKPAEPPAVPTSRRRLLKPLPPEG---PRIAMPMPITAATTVDNNGSTSMREGDNAAADD 446

Query: 234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKS----KNE 289
           G +  P+ KLKP  WDKV A  D +MVW Q+KS SFQ +E+MIE LF  +       +  
Sbjct: 447 GGSGEPRPKLKPLHWDKVRATSDRAMVWDQLKSSSFQLDEDMIEALFMNNSTPAAPPREV 506

Query: 290 KKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLL 347
            +K + + +  Q  +++D KKAQN++I+LRALNVT EEV DALL+GN   L +EL++TL+
Sbjct: 507 GRKAAGVPSFRQEERVLDPKKAQNIAILLRALNVTREEVSDALLDGNAECLGSELLETLV 566

Query: 348 KMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKE 407
           KMAPT EEELKLR ++G+LS+LG AERFLKA++DIPF+FKR++A+L+    + E++  + 
Sbjct: 567 KMAPTKEEELKLRDYSGDLSKLGSAERFLKAVLDIPFAFKRVDAMLYRANFETEINYLRN 626

Query: 408 SFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG 467
           SFE LE AC++LR SRLFLKLLEAVL+TGNRMN GT RG A+AFKLDTLLKL+DVKG DG
Sbjct: 627 SFETLEAACEDLRGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKLDTLLKLADVKGTDG 686

Query: 468 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAV 527
           KTTLLHFVVQEIIRSE    A+  +ES   SS K D                R  GL+ V
Sbjct: 687 KTTLLHFVVQEIIRSED---AKSEKESAMISSSKDD----------------RKHGLKVV 727

Query: 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFV 587
           S LSSEL NVKKAA +D D L G V+KL   L K +  L  + K   +   F  +++ F+
Sbjct: 728 SGLSSELGNVKKAATMDFDVLHGYVNKLETGLEKIKSVLQLE-KKCTQGQRFFMSMQDFL 786

Query: 588 QNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQV 645
           + AE +I  +  EE+R +  VK   +YFHG+  K+E   LR+F +VRDF   LD+ C++V
Sbjct: 787 KEAEREIERVRGEERRALGRVKDITEYFHGDTAKEEAHPLRIFMVVRDFLSTLDQVCREV 846

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/425 (51%), Positives = 290/425 (68%), Gaps = 23/425 (5%)

Query: 233 EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLF----GYSEKSKN 288
           + +   P+ KLKP  WDKV A+ D  MVW Q+KS SFQ NEEMIETLF      S   K 
Sbjct: 497 KSEETTPRPKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIETLFICNPANSAPPKE 556

Query: 289 EKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTL 346
              +   L T     +++D KK+QN++I+LRALNV+ E+VCDAL EGN     AEL++TL
Sbjct: 557 PATRRPVLPTPKTDNKVLDPKKSQNIAILLRALNVSKEQVCDALCEGNTENFGAELLETL 616

Query: 347 LKMAPTAEEELKLRLFNGELS--QLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 404
           LKMAPT EEE+KLR F  E S  +LGPAE+FLKA++DIPF+FKR++A+L++   + EV+ 
Sbjct: 617 LKMAPTKEEEIKLREFKEETSPIKLGPAEKFLKAVLDIPFAFKRVDAMLYIANFESEVNY 676

Query: 405 TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 464
            K+SFE LE AC ELRNSRLFLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKG
Sbjct: 677 LKKSFETLETACDELRNSRLFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 736

Query: 465 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 524
            DGKTTLLHFVVQEIIR+EG   +  +  ++S    + + L +E           + LGL
Sbjct: 737 TDGKTTLLHFVVQEIIRTEG---SHLSASNQSTPRTQANPLRDEL--------ECKKLGL 785

Query: 525 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDF--LNTDMKNLGENSGFHET 582
           Q V+ L +EL NVKKAAA+D+D L+  VSKL   + K  +   LN ++K+  +   FH++
Sbjct: 786 QVVAGLGNELSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSREDAWRFHDS 845

Query: 583 LKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDK 640
           ++ F++ A+ DI+ +  +E   +SLVK   +YFHG++ K+E    R+F +VRDF  +LD+
Sbjct: 846 MQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQ 905

Query: 641 ACKQV 645
            CK+V
Sbjct: 906 VCKEV 910

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/452 (48%), Positives = 293/452 (64%), Gaps = 33/452 (7%)

Query: 213 KVPRPPLGQKHSSSSVGAGA-----EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSG 267
           K P P        +SV AG+     +GD +  K KLKP  WDKV A+ D + VW Q+KS 
Sbjct: 427 KTPSPKTKAVEEVNSVSAGSLEKSGDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSS 486

Query: 268 SFQFNEEMIETLFGYSEKSKNEKK--KGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTL 325
           SFQ NE+ +E LFG +  S   K+  + S +       +++D KK+QN++I+LRALNVT 
Sbjct: 487 SFQLNEDRMEHLFGCNSGSSAPKEPVRRSVIPLAENENRVLDPKKSQNIAILLRALNVTR 546

Query: 326 EEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIP 383
           EEV +AL +GN   L AEL++TL+KMAPT EEE+KLR ++G++S+LG AERFLK ++DIP
Sbjct: 547 EEVSEALTDGNPESLGAELLETLVKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIP 606

Query: 384 FSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGT 443
           F+FKR+EA+L+      EV   + SF+ LE A  EL+ SRLFLKLLEAVL TGNRMN GT
Sbjct: 607 FAFKRVEAMLYRANFDAEVKYLRNSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGT 666

Query: 444 FRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTD 503
            RG A AFKLDTLLKL D+KGVDGKTTLLHFVVQEI RSEG             ++ K +
Sbjct: 667 NRGDAIAFKLDTLLKLVDIKGVDGKTTLLHFVVQEITRSEGT------------TTTKDE 714

Query: 504 DLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTR 563
            +L      +  ++ +R  GLQ V+ LS +L NVKK+A +D D L+  V+KL   L K R
Sbjct: 715 TIL------HGNNDGFRKQGLQVVAGLSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLR 768

Query: 564 DFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 623
            FL T+         F +++K+F++ AE +I  +   E++ +S+VK   +YFHGNA ++E
Sbjct: 769 SFLKTETT----QGRFFDSMKTFLKEAEEEIRKIKGGERKALSMVKEVTEYFHGNAAREE 824

Query: 624 G--LRLFTIVRDFFIMLDKACKQVKDAPKKST 653
              LR+F +VRDF  +LD  CK+VK   + ST
Sbjct: 825 AHPLRIFMVVRDFLGVLDNVCKEVKTMQEMST 856

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/455 (46%), Positives = 286/455 (62%), Gaps = 32/455 (7%)

Query: 198 GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDN 257
            G    PPPP+ S     R PLG+                AP  KLKP  WDKV A PD 
Sbjct: 441 AGINKTPPPPL-SLDFSERRPLGKD--------------GAPLPKLKPLHWDKVRATPDR 485

Query: 258 SMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIM 317
           +MVW ++++ SF+ +EEMIE+LFGY+ +S  + ++G S    P    +++ K+ QN +I+
Sbjct: 486 TMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEGKSKTPSPGK-HLLEPKRLQNFTIL 544

Query: 318 LRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLK 377
           L+ALN T +++C AL +G  L  + ++ L+KM PT EEELKLR + G + +LG AE+FL+
Sbjct: 545 LKALNATADQICSALGKGEGLCLQQLEALVKMVPTKEEELKLRSYKGAVDELGSAEKFLR 604

Query: 378 ALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGN 437
           ALV +PF+F+R EA+L+  T ++EV   + SF +LE ACKEL++SRLFLKLLEAVLKTGN
Sbjct: 605 ALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGN 664

Query: 438 RMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSF 497
           RMN GT RGGA+AFKLD LLKLSDVKG DGKTTLLHFVVQEI RSEG+R           
Sbjct: 665 RMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLHFVVQEISRSEGIRV---------- 714

Query: 498 SSVKTDDLLEETSKSNET----DEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVS 553
           S      ++ + S  N T    +E YR +GL  VS L++EL NVKK A ID + L  +VS
Sbjct: 715 SDSIMGRIMNQRSNKNRTPEEKEEDYRRMGLDLVSGLNTELRNVKKTATIDLEGLVTSVS 774

Query: 554 KLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD 613
            L   L +     +  +K   EN  F  ++ SF++  E  +  L E+EKRIM  V    +
Sbjct: 775 NLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKSLEELREDEKRIMERVGEIAE 834

Query: 614 YFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQVK 646
           YFHG+   DE   LR+F IVRDF  MLD  C++++
Sbjct: 835 YFHGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELR 869

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/434 (49%), Positives = 283/434 (65%), Gaps = 38/434 (8%)

Query: 224 SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLF--- 280
           ++ SV    E   + P+ KLKP  WDKV  + D  MVW ++K      +E+MIE LF   
Sbjct: 397 ATMSVRTRGEAAGDEPRPKLKPLHWDKVRTSSDRDMVWDRLK-----LDEDMIEVLFMNN 451

Query: 281 --GYSEKSKNEKKKGSSLDTGPQYIQ---IIDQKKAQNLSIMLRALNVTLEEVCDALLEG 335
               + +  N KK G      PQ+ Q   ++D KKAQN++I+LRALNVTLEEV DALL+G
Sbjct: 452 STAVAPRMDNPKKVGM-----PQFKQEERVLDPKKAQNIAILLRALNVTLEEVTDALLDG 506

Query: 336 NE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALL 393
           N   L AEL++TL+KMAPT EEELKLR F G+LS+LG AERFLKA++DIPF+FKR++ +L
Sbjct: 507 NAECLGAELLETLVKMAPTKEEELKLRDFTGDLSKLGSAERFLKAVLDIPFAFKRVDVML 566

Query: 394 FMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKL 453
           +    + EV+  ++SF+ LE AC +L+ SRLFLKLLEAVL+TGNRMN GT RG A+AFKL
Sbjct: 567 YRANFENEVNYLRKSFQTLEAACDDLKGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKL 626

Query: 454 DTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSN 513
           DTLLKL+DVKG DGKTTLLHFVVQEI+RSE  + + +A E+   +  K            
Sbjct: 627 DTLLKLADVKGADGKTTLLHFVVQEIVRSEDAK-SEKAPENHITNIAKV----------- 674

Query: 514 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNL 573
              E  R  GL+ VS LS+EL NVK+AA +D D L G VSKL   L K +  L  + K  
Sbjct: 675 ---EQLRRQGLKVVSGLSTELGNVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLE-KQC 730

Query: 574 GENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIV 631
            +   F  T++ F++ AE +I  +  +EK  +  VK   +YFHGNA K+E   LR+F +V
Sbjct: 731 SQGVNFFATMREFLKEAEQEIEQVRHDEKAALGRVKEITEYFHGNAVKEEAHPLRIFMVV 790

Query: 632 RDFFIMLDKACKQV 645
           RDF  MLD  C++V
Sbjct: 791 RDFLSMLDHVCREV 804

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/457 (46%), Positives = 290/457 (63%), Gaps = 18/457 (3%)

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLAN 254
           P R  PA RPPPP P   +V   P    HS     +  E      K KLK   WDKV A+
Sbjct: 401 PKRLCPA-RPPPPPPPPPQVSEVPATMSHSLPGDDSDPEKKVETMKPKLKTLHWDKVRAS 459

Query: 255 PDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNL 314
               MVW QIKS SFQ NEEMIETLF  ++ +   + +   + +  Q  + +D +K+ N+
Sbjct: 460 SSRVMVWDQIKSNSFQVNEEMIETLFKVNDPTS--RTRDGVVQSVSQENRFLDPRKSHNI 517

Query: 315 SIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLF----NGELSQ 368
           +I+LRALNVT +EVC+AL+EGN   L  EL++ LLKMAPT EEE KL+      +G  S+
Sbjct: 518 AILLRALNVTADEVCEALIEGNSDTLGPELLECLLKMAPTKEEEDKLKELKDDDDGSPSK 577

Query: 369 LGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKL 428
           +GPAE+FLKAL++IPF+FKR++A+L++   + E+     SF+ LE A  EL+N+R+FLKL
Sbjct: 578 IGPAEKFLKALLNIPFAFKRIDAMLYIVKFESEIEYLNRSFDTLEAATGELKNTRMFLKL 637

Query: 429 LEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAA 488
           LEAVLKTGNRMN GT RG A AFKLDTLLKL D+KG DGKTTLLHFVVQEII+ EG R  
Sbjct: 638 LEAVLKTGNRMNIGTNRGDAHAFKLDTLLKLVDIKGADGKTTLLHFVVQEIIKFEGARVP 697

Query: 489 RRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSL 548
               +S        D++ E+++   + D   + LGLQ VS LSS+L NVKKAAA+D++SL
Sbjct: 698 FTPSQSH-----IGDNMAEQSAF--QDDLELKKLGLQVVSGLSSQLINVKKAAAMDSNSL 750

Query: 549 TGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608
               +++   + K ++ + T++K       F E++ SF+   E +I  L      +M +V
Sbjct: 751 INETAEIARGIAKVKEVI-TELKQETGVERFLESMNSFLNKGEKEITELQSHGDNVMKMV 809

Query: 609 KSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQV 645
           K   +YFHGN+ +    R+F +VRDF  +LD+ CK+V
Sbjct: 810 KEVTEYFHGNS-ETHPFRIFAVVRDFLTILDQVCKEV 845

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
224126279	923	predicted protein [Populus trichocarpa]	0.894	0.677	0.704	0.0
255563641	965	actin binding protein, putative [Ricinus	0.875	0.634	0.656	0.0
224117388	983	predicted protein [Populus trichocarpa]	0.678	0.482	0.785	0.0
302143198	499	unnamed protein product [Vitis vinifera]	0.706	0.989	0.722	0.0
225461154	1004	PREDICTED: formin-like protein 5-like [V	0.672	0.468	0.743	0.0
356514976	978	PREDICTED: uncharacterized protein LOC10	0.705	0.504	0.702	0.0
297796339	902	hypothetical protein ARALYDRAFT_495546 [	0.805	0.624	0.677	0.0
46405141	900	formin homology 2 domain-containing prot	0.805	0.625	0.675	0.0
14596027	900	Unknown protein [Arabidopsis thaliana] g	0.805	0.625	0.674	0.0
15239699	900	formin-like protein 5 [Arabidopsis thali	0.805	0.625	0.674	0.0

>gi|224126279|ref|XP_002319800.1| predicted protein [Populus trichocarpa] gi|222858176|gb|EEE95723.1| predicted protein [Populus trichocarpa]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/656 (70%), Positives = 522/656 (79%), Gaps = 31/656 (4%)

Query: 62  LAPHKILSLSDY-----SVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPL 116
           L  H   ++S +     S+ S  +K + L++   D + S GAV   AKS + + ++  P+
Sbjct: 274 LGHHSFGNISSHEKMGSSLESRFNKSDALNVS-LDESMSLGAVSAAAKS-SGDSKMNTPV 331

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 176
             PPGR GS     P LKPPPGRAEPLP EPPASLRP PPS   P PPPPP   P PA +
Sbjct: 332 PHPPGRTGSN----PFLKPPPGRAEPLPPEPPASLRP-PPSKAGPTPPPPPPAPPAPAKS 386

Query: 177 PAPRAPPPPP-----------KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH-- 223
            +   P PP            KPGP   PPP GG APRPPPPMPSG KVPRPPLG KH  
Sbjct: 387 SSSTGPRPPGPPPPPPIAPGVKPGPRTLPPPIGGSAPRPPPPMPSGPKVPRPPLGSKHPS 446

Query: 224 -SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY 282
            ++SS GAG E DA+APK KLKPFFWDKVLANPD+SMVWHQIKSGSFQFNEEMIETLFGY
Sbjct: 447 NTASSEGAGMEDDADAPKAKLKPFFWDKVLANPDHSMVWHQIKSGSFQFNEEMIETLFGY 506

Query: 283 S-EKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAE 341
           + +K+KNE+KK SS D  P +IQI+D KKAQNLSI+LRALNVT+EEVCDAL EGNELP E
Sbjct: 507 APDKNKNERKKESSQDPTPHFIQILDPKKAQNLSILLRALNVTIEEVCDALREGNELPVE 566

Query: 342 LIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEE 401
           L+Q LL+MAPTA+EELKLRL++GELSQLGPAERFLKALVDIPF+FKRLEALL MCTLQEE
Sbjct: 567 LVQNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKRLEALLLMCTLQEE 626

Query: 402 VSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSD 461
           ++++KESFE LEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSD
Sbjct: 627 ITSSKESFETLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSD 686

Query: 462 VKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSV--KTDDLLEETSKSNETDEHY 519
           VKGVDGKTTLLHFVVQEI+RSEGVRAAR  RESRS SSV  KTDDLLEE   S +T+EHY
Sbjct: 687 VKGVDGKTTLLHFVVQEIVRSEGVRAARAGRESRSLSSVSIKTDDLLEEI--STDTEEHY 744

Query: 520 RNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGF 579
            NLGLQ VSHLSSELENVK+AA +D D+LT + +KLG +LL T++FLN DMKNL E+SGF
Sbjct: 745 CNLGLQVVSHLSSELENVKRAAVVDTDNLTRSAAKLGQSLLVTQNFLNKDMKNLEEDSGF 804

Query: 580 HETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLD 639
           H+TLK FVQNAE D+M LLEEEKRIM+LVKSTGDYFHGNAGKDEGLRLF IVRDF I+LD
Sbjct: 805 HQTLKGFVQNAEVDVMSLLEEEKRIMALVKSTGDYFHGNAGKDEGLRLFVIVRDFLIILD 864

Query: 640 KACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSS 695
           K CK+V++A K+  K+ KKE ST SS S+  QQ   DLR RLFPAI ERR ED SS
Sbjct: 865 KVCKEVREAQKRLAKTQKKEASTVSSPSNQRQQLLADLRQRLFPAIAERRPEDSSS 920

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563641|ref|XP_002522822.1| actin binding protein, putative [Ricinus communis] gi|223537906|gb|EEF39520.1| actin binding protein, putative [Ricinus communis]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/693 (65%), Positives = 507/693 (73%), Gaps = 81/693 (11%)

Query: 68  LSLSDYSVGS--------GNSKEEKLDIGKF-------------------------DGTA 94
           LSL+DYS GS         + KEEK     F                         D TA
Sbjct: 293 LSLTDYSTGSSYKPFGVVASIKEEKAGQQSFNNNLSHDRKHSSLDSINSDALHVSVDETA 352

Query: 95  SFGAVGGT---AKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL 151
           S G VG +   A+S +        + PPPGRV S    MPPLKPPPGRA PLP EPPASL
Sbjct: 353 SLGVVGASNFSAESVDSTSNNTGLVPPPPGRVDS----MPPLKPPPGRAVPLPPEPPASL 408

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP-------------------PP 192
           R        PPP       PP  P   P         G                    PP
Sbjct: 409 R--------PPPRKVGPAPPPTPPRAPPPPAKASSSMGSRPPGPPPPPPMAPNPRPGPPP 460

Query: 193 PPPPRGGPAPRPPPPMPS-GSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKV 251
           PPP +G  AP  PPP  S G+KVPRPP G K     + +G +GDAN PK KLKPFFWDKV
Sbjct: 461 PPPSKGSHAPPRPPPPLSVGAKVPRPPTGSK-----LPSGGDGDANTPKAKLKPFFWDKV 515

Query: 252 LANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNE-KKKGSSLDTGPQYIQIIDQ 308
           +ANP++SMVWHQIKSGSFQFNEEMIETLFGY+  +++KNE KK+ SS +   QYIQI+D 
Sbjct: 516 MANPEHSMVWHQIKSGSFQFNEEMIETLFGYAAVDRNKNEGKKESSSQEPSTQYIQILDT 575

Query: 309 KKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQ 368
           KKAQNLSI+LRALNVT+EEVCDAL EGNELP EL+QTLLKMAPTA+EELKLR+F+GELSQ
Sbjct: 576 KKAQNLSILLRALNVTIEEVCDALREGNELPVELLQTLLKMAPTADEELKLRVFSGELSQ 635

Query: 369 LGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKL 428
           LGPAERFLKALV+IPF++KRLEALLFMCTLQEEV+ TKESFE LEVACKELR+SRLFLKL
Sbjct: 636 LGPAERFLKALVEIPFAYKRLEALLFMCTLQEEVTTTKESFETLEVACKELRSSRLFLKL 695

Query: 429 LEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAA 488
           LEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEIIRSEGVRAA
Sbjct: 696 LEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRSEGVRAA 755

Query: 489 RRARESRSFS--SVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDAD 546
           R A+ESR+FS  SV T+DLLE+ S   +T+E YR+LGLQ VS LSSELENVKKAA +DAD
Sbjct: 756 RAAKESRTFSNVSVTTEDLLEDISP--DTEEDYRSLGLQVVSRLSSELENVKKAANVDAD 813

Query: 547 SLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMS 606
           SL GTV+KLGH+LLKT+DFLN DMK+L   S FHETLKSFVQNAE D+M LLEEEKRIM+
Sbjct: 814 SLIGTVAKLGHSLLKTKDFLNKDMKSLEGGSEFHETLKSFVQNAEVDVMLLLEEEKRIMA 873

Query: 607 LVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSS 666
           L+KSTGDYFHG AGKDEGLRLF IVRDF I+LDK CKQV +A KKS KSLKKE STASS 
Sbjct: 874 LMKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKVCKQVGEAQKKSAKSLKKESSTASSH 933

Query: 667 SDTPQQPSPDLRHRLFPAITERRVEDFSSDEES 699
           S   Q  SPD R RLFPAI ERR E+ SSD+ES
Sbjct: 934 SSPRQHLSPDFRSRLFPAIAERR-ENSSSDDES 965

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117388|ref|XP_002317562.1| predicted protein [Populus trichocarpa] gi|222860627|gb|EEE98174.1| predicted protein [Populus trichocarpa]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/484 (78%), Positives = 423/484 (87%), Gaps = 10/484 (2%)

Query: 211 GSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQ 270
           GSK P        SS   G G + DA+APKTKLKPFFWDKVLANPD+SMVWHQIKSGSFQ
Sbjct: 495 GSKRP----SNSASSEGAGLGDDADADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQ 550

Query: 271 FNEEMIETLFGYS-EKSKNE-KKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEV 328
           FNEEMIETLFGY+ +K+KNE KK+ SS D  PQYIQI+D KKAQNLSI+LRALNVT+EEV
Sbjct: 551 FNEEMIETLFGYAPDKNKNEHKKESSSQDPSPQYIQILDPKKAQNLSILLRALNVTIEEV 610

Query: 329 CDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKR 388
           CDAL EGNELP EL+Q LL+MAPTA+EELKLRL++GELSQLGPAERFLKALVDIPF+FKR
Sbjct: 611 CDALREGNELPVELLQNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKR 670

Query: 389 LEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGA 448
           LEALLFMC LQEEV+ TKESFE LEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGA
Sbjct: 671 LEALLFMCILQEEVATTKESFETLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGA 730

Query: 449 QAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFS--SVKTDDLL 506
           QAFKLDTLLKLSDVKG+DGKTTLLHFVVQEIIRSEGVRAAR  RESRS S  SVKTDDLL
Sbjct: 731 QAFKLDTLLKLSDVKGIDGKTTLLHFVVQEIIRSEGVRAARAGRESRSISSVSVKTDDLL 790

Query: 507 EETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFL 566
           E+ S   +T+++Y +LGLQ VS LSSELENVK+AA +DADSLTG+V+KLG +++ TR+FL
Sbjct: 791 EDISP--DTEDNYSSLGLQVVSQLSSELENVKRAAVVDADSLTGSVAKLGQSVVVTRNFL 848

Query: 567 NTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLR 626
           N DMKNL ENSGFHETLKSFVQNAE DIM LLEEEKRI++LVKSTGDYF+GNAGKDEGLR
Sbjct: 849 NKDMKNLEENSGFHETLKSFVQNAEVDIMSLLEEEKRIVALVKSTGDYFYGNAGKDEGLR 908

Query: 627 LFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAIT 686
           LF +VRDF I+LDK CK+V +A K+S K+ KKE STASS S   QQPSPD+R RLFPAI 
Sbjct: 909 LFIVVRDFLIILDKVCKEVGEAQKRSAKTRKKEASTASSPSHKHQQPSPDIRQRLFPAIA 968

Query: 687 ERRV 690
           ERR+
Sbjct: 969 ERRM 972

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143198|emb|CBI20493.3| unnamed protein product [Vitis vinifera]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/500 (72%), Positives = 419/500 (83%), Gaps = 6/500 (1%)

Query: 202 PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVW 261
           PRPP P+ +G K  +P     ++ S  G     +A+APKTKLKPFFWDKVLANPD+SMVW
Sbjct: 3   PRPPQPIGTGLKASQPSTSAPNAPSEGGVSG-SEADAPKTKLKPFFWDKVLANPDHSMVW 61

Query: 262 HQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLR 319
           HQIKSGSFQF+EEMIETLFGY+  EK+K  +K+ S+ D+  QYIQ+ID KK+QNL+I+LR
Sbjct: 62  HQIKSGSFQFSEEMIETLFGYAPPEKNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLR 121

Query: 320 ALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKAL 379
           ALNVT EE CDA+ EGNELP EL+QTLLKMAPTAEEELKLRLF+G LSQLGPAERFLK L
Sbjct: 122 ALNVTTEEFCDAIQEGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVL 181

Query: 380 VDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRM 439
           VDIPF+FKRLE+LLFM +LQE++S  KESF  LE ACKEL++SRLFLKLLEAVLKTGNRM
Sbjct: 182 VDIPFAFKRLESLLFMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVLKTGNRM 241

Query: 440 NDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSS 499
           NDGTFRGGAQAFKLDTLLKL+DVKGVDGKTTLLHFVV EIIRSEGVRA R ARESRS SS
Sbjct: 242 NDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSS 301

Query: 500 VKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHAL 559
           +K+DDLLE+ S+ +E  EHYR+LGLQ VS LS ELENV+KA+ +D D L  TV+K+G+ L
Sbjct: 302 IKSDDLLEDPSQDSE--EHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVAKVGNEL 359

Query: 560 LKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNA 619
           LKTR+FLN+DM+N+   +GF +TL+SFVQ+AE DI WLLEEEKRI +LVKST DYFHGNA
Sbjct: 360 LKTRNFLNSDMRNIDNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNA 419

Query: 620 GKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRH 679
           GKDEGLRLF IVRDF IMLDKACKQV+DAPKK  +  KKE  TA  SSDT Q  SPD+R 
Sbjct: 420 GKDEGLRLFVIVRDFLIMLDKACKQVRDAPKKP-RPQKKEVPTAQPSSDTRQPASPDIRQ 478

Query: 680 RLFPAITERRVEDFSSDEES 699
           +LFPAI +RR++  SSDEES
Sbjct: 479 KLFPAIVDRRMDYSSSDEES 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461154|ref|XP_002280117.1| PREDICTED: formin-like protein 5-like [Vitis vinifera]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/475 (74%), Positives = 407/475 (85%), Gaps = 5/475 (1%)

Query: 227  SVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--E 284
            S G  +  +A+APKTKLKPFFWDKVLANPD+SMVWHQIKSGSFQF+EEMIETLFGY+  E
Sbjct: 532  SEGGVSGSEADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFSEEMIETLFGYAPPE 591

Query: 285  KSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQ 344
            K+K  +K+ S+ D+  QYIQ+ID KK+QNL+I+LRALNVT EE CDA+ EGNELP EL+Q
Sbjct: 592  KNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLRALNVTTEEFCDAIQEGNELPVELLQ 651

Query: 345  TLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 404
            TLLKMAPTAEEELKLRLF+G LSQLGPAERFLK LVDIPF+FKRLE+LLFM +LQE++S 
Sbjct: 652  TLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVLVDIPFAFKRLESLLFMGSLQEDISM 711

Query: 405  TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 464
             KESF  LE ACKEL++SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG
Sbjct: 712  LKESFATLEAACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKG 771

Query: 465  VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 524
            VDGKTTLLHFVV EIIRSEGVRA R ARESRS SS+K+DDLLE+ S+ +E  EHYR+LGL
Sbjct: 772  VDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSSIKSDDLLEDPSQDSE--EHYRSLGL 829

Query: 525  QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 584
            Q VS LS ELENV+KA+ +D D L  TV+K+G+ LLKTR+FLN+DM+N+   +GF +TL+
Sbjct: 830  QVVSGLSDELENVRKASVLDTDGLKETVAKVGNELLKTRNFLNSDMRNIDNKNGFCQTLE 889

Query: 585  SFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 644
            SFVQ+AE DI WLLEEEKRI +LVKST DYFHGNAGKDEGLRLF IVRDF IMLDKACKQ
Sbjct: 890  SFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNAGKDEGLRLFVIVRDFLIMLDKACKQ 949

Query: 645  VKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES 699
            V+DAPKK  +  KKE  TA  SSDT Q  SPD+R +LFPAI +RR++  SSDEES
Sbjct: 950  VRDAPKK-PRPQKKEVPTAQPSSDTRQPASPDIRQKLFPAIVDRRMDYSSSDEES 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514976|ref|XP_003526177.1| PREDICTED: uncharacterized protein LOC100776210 [Glycine max]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/505 (70%), Positives = 416/505 (82%), Gaps = 12/505 (2%)

Query: 198 GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDN 257
           G   PRPPP    GSKVPRP      S  +V AG EG+A+APK KLKPFFWDKV ANPD 
Sbjct: 482 GVAPPRPPPSF--GSKVPRPL--ASGSKDTVVAGVEGEADAPKAKLKPFFWDKVQANPDQ 537

Query: 258 SMVWHQIKSGSFQFNEEMIETLFGYSEKSKN---EKKKGSSLDTGPQYIQIIDQKKAQNL 314
           SMVW+QIKSGSFQFNEEMIETLFGY+   KN   ++K+ SS D  P +IQIID+KKAQNL
Sbjct: 538 SMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGKKQKQSSSQDPSPLFIQIIDKKKAQNL 597

Query: 315 SIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAER 374
            I+LRALNVT+EEVCDAL EG+ELP E +QTLLKMAPT++EELKLRLF+G+LSQLGPA+R
Sbjct: 598 LILLRALNVTMEEVCDALYEGHELPPEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADR 657

Query: 375 FLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLK 434
           FLKA+VDIPF+FKR+E LLFM +L+E+++ T ESF ILEVACKELRN+RLFLKLLEAVLK
Sbjct: 658 FLKAMVDIPFAFKRMEVLLFMGSLKEDLATTMESFAILEVACKELRNNRLFLKLLEAVLK 717

Query: 435 TGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARES 494
           TGNRMNDGTFRGGAQAFKLDTLLKLSDVKG DGKTTLLHFVV EIIRSEG++A R+A+ES
Sbjct: 718 TGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAIRKAKES 777

Query: 495 RSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSK 554
           +  SS+K DDL + T    ET++ Y  +GLQ VS LSSELENVKKAA IDADSLTGT +K
Sbjct: 778 QKSSSIKLDDLHDST---RETEDRYHEIGLQVVSRLSSELENVKKAAIIDADSLTGTTAK 834

Query: 555 LGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDY 614
           LGH L+KTRD +N  MKN+ E+ GF ET+KSFVQNAE D+M LLEEEK+I++LVKSTGDY
Sbjct: 835 LGHGLIKTRDLVNKSMKNVEEDRGFCETVKSFVQNAEADVMKLLEEEKKIVALVKSTGDY 894

Query: 615 FHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPS 674
           FHGN+GKDEG RLF +VRDF IM+DK C +V+D  KKS K+ K+E    +SSS+   +P 
Sbjct: 895 FHGNSGKDEGTRLFIVVRDFLIMVDKVCNEVRDTKKKSVKTQKQETPREASSSEP--RPP 952

Query: 675 PDLRHRLFPAITERRVEDFSSDEES 699
           PD R RLFPAI ERR++D SSD+ES
Sbjct: 953 PDFRQRLFPAIAERRMDDISSDDES 977

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796339|ref|XP_002866054.1| hypothetical protein ARALYDRAFT_495546 [Arabidopsis lyrata subsp. lyrata] gi|297311889|gb|EFH42313.1| hypothetical protein ARALYDRAFT_495546 [Arabidopsis lyrata subsp. lyrata]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/580 (67%), Positives = 450/580 (77%), Gaps = 17/580 (2%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           R  S L G    K   G+ EPLP EPP  L+     G  PPPP P  P P  A  P P  
Sbjct: 337 RTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKGSAPPPPVPAPPMPSSAGPPRPPP 392

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P PPP  G P PPPP G   PRPPPPM  G K PRP         S G     D +APKT
Sbjct: 393 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRP---------SSGPATASDDDAPKT 443

Query: 242 KLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTG 299
           KLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK  S     
Sbjct: 444 KLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAAL 503

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
           PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT EEELKL
Sbjct: 504 PQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTPEEELKL 563

Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
           RL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ LEVACKEL
Sbjct: 564 RLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQTLEVACKEL 623

Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEI 479
           R SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEI
Sbjct: 624 RGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEI 683

Query: 480 IRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKK 539
           IR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGLQ VS LSSELE+VKK
Sbjct: 684 IRTEGVRAARTIRESQSFSSVKTEDLLAEETSEETE-ENYRNLGLQKVSGLSSELEHVKK 742

Query: 540 AAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           +A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG IM +L 
Sbjct: 743 SANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEGSIMSILG 802

Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 659
           EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  +  +  +K+
Sbjct: 803 EEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRPVRMARKQ 862

Query: 660 GSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 698
           GSTASSSS+TP+Q PS D R +LFPAITERR++  SSD +
Sbjct: 863 GSTASSSSETPRQTPSLDPRQKLFPAITERRMDQSSSDSD 902

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46405141|gb|AAS93430.1| formin homology 2 domain-containing protein 5 [Arabidopsis thaliana] gi|47716755|gb|AAT37554.1| formin homology 2 domain-containing protein 5 [Arabidopsis thaliana]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/580 (67%), Positives = 451/580 (77%), Gaps = 17/580 (2%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           R  S L G    K   G+ EPLP EPP  L+        PPPP P  P P  A  P P  
Sbjct: 335 RTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPPMPSSAGPPRPPP 390

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          D +APKT
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL---------DDDAPKT 441

Query: 242 KLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTG 299
           KLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK  S     
Sbjct: 442 KLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAAL 501

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
           PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT EEELKL
Sbjct: 502 PQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTPEEELKL 561

Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
           RL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ LEVACKEL
Sbjct: 562 RLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQTLEVACKEL 621

Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEI 479
           R SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEI
Sbjct: 622 RGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEI 681

Query: 480 IRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKK 539
           IR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSSELE+VKK
Sbjct: 682 IRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSSELEHVKK 740

Query: 540 AAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           +A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG IM +LE
Sbjct: 741 SANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEGSIMSILE 800

Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 659
           EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  +  +  +K+
Sbjct: 801 EEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRPVRMARKQ 860

Query: 660 GSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 698
           GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 861 GSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14596027|gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|22136490|gb|AAM91323.1| unknown protein [Arabidopsis thaliana]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/580 (67%), Positives = 450/580 (77%), Gaps = 17/580 (2%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           R  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A  P P  
Sbjct: 335 RTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPP 390

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          D +APKT
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL---------DDDAPKT 441

Query: 242 KLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTG 299
           KLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK  S     
Sbjct: 442 KLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAAL 501

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
           PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT EEELKL
Sbjct: 502 PQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTPEEELKL 561

Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
           RL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ LEVACKEL
Sbjct: 562 RLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKLEVACKEL 621

Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEI 479
           R SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEI
Sbjct: 622 RGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEI 681

Query: 480 IRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKK 539
           IR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSSELE+VKK
Sbjct: 682 IRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSSELEHVKK 740

Query: 540 AAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           +A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG IM +LE
Sbjct: 741 SANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEGSGFREALEDFIQNAEGSIMSILE 800

Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 659
           EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  +  +  +K+
Sbjct: 801 EEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRPVRMARKQ 860

Query: 660 GSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 698
           GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 861 GSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239699|ref|NP_200276.1| formin-like protein 5 [Arabidopsis thaliana] gi|30696498|ref|NP_851191.1| formin-like protein 5 [Arabidopsis thaliana] gi|160013957|sp|Q94B77.2|FH5_ARATH RecName: Full=Formin-like protein 5; Short=AtFH5; Short=AtFORMIN-5; AltName: Full=Formin homology 2 domain-containing protein 5 gi|9758957|dbj|BAB09344.1| unnamed protein product [Arabidopsis thaliana] gi|332009139|gb|AED96522.1| formin-like protein 5 [Arabidopsis thaliana] gi|332009140|gb|AED96523.1| formin-like protein 5 [Arabidopsis thaliana]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/580 (67%), Positives = 450/580 (77%), Gaps = 17/580 (2%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           R  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A  P P  
Sbjct: 335 RTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPP 390

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          D +APKT
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL---------DDDAPKT 441

Query: 242 KLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTG 299
           KLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK  S     
Sbjct: 442 KLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAAL 501

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
           PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT EEELKL
Sbjct: 502 PQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPTPEEELKL 561

Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
           RL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ LEVACKEL
Sbjct: 562 RLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKLEVACKEL 621

Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEI 479
           R SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEI
Sbjct: 622 RGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEI 681

Query: 480 IRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKK 539
           IR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSSELE+VKK
Sbjct: 682 IRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSSELEHVKK 740

Query: 540 AAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           +A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG IM +LE
Sbjct: 741 SANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEGSIMSILE 800

Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 659
           EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  +  +  +K+
Sbjct: 801 EEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRPVRMARKQ 860

Query: 660 GSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 698
           GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 861 GSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
TAIR|locus:2172129	900	Fh5 "formin homology5" [Arabid	0.683	0.531	0.654	9.1e-167
TAIR|locus:2158576	899	FH6 "formin homolog 6" [Arabid	0.366	0.284	0.561	3.9e-100
TAIR|locus:2094493	1051	AFH1 "formin homology 1" [Arab	0.356	0.236	0.589	8.5e-96
TAIR|locus:2079807	884	AT3G05470 [Arabidopsis thalian	0.580	0.459	0.467	2.6e-94
TAIR|locus:2043989	894	AT2G43800 [Arabidopsis thalian	0.589	0.460	0.454	7.1e-90
TAIR|locus:2020568	760	FH8 "formin 8" [Arabidopsis th	0.587	0.540	0.391	3.5e-78
TAIR|locus:2025981	929	AT1G59910 [Arabidopsis thalian	0.597	0.449	0.393	3.6e-76
TAIR|locus:2156248	782	AT5G48360 [Arabidopsis thalian	0.309	0.276	0.475	1.6e-67
TAIR|locus:2079711	841	AT3G07540 [Arabidopsis thalian	0.343	0.285	0.356	3.3e-48
MGI|MGI:1194490	1255	Diap1 "diaphanous homolog 1 (D	0.340	0.189	0.305	4.1e-28

TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1553 (551.7 bits), Expect = 9.1e-167, Sum P(2) = 9.1e-167
 Identities = 317/484 (65%), Positives = 366/484 (75%)

Query:   219 LGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIET 278
             LG K      G     D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+
Sbjct:   419 LGPKAPRPPSGPADALDDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIES 478

Query:   279 LFGYXXXXXXXXXXXXXLDTG--PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN 336
             LFGY                   PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGN
Sbjct:   479 LFGYAAADKNKNDKKGSSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGN 538

Query:   337 ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMC 396
             ELP E IQTLLKMAPT EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMC
Sbjct:   539 ELPVEFIQTLLKMAPTPEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMC 598

Query:   397 TLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 456
             TL EE++  KESF+ LEVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL
Sbjct:   599 TLHEEMAFVKESFQKLEVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 658

Query:   457 LKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLL-EETSKSNET 515
             LKL+DVKG DGKTTLLHFVVQEII                    KT+DLL EETS+  E+
Sbjct:   659 LKLADVKGTDGKTTLLHFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSE--ES 716

Query:   516 DEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGE 575
             +E+YRNLGL+ VS LSSELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE
Sbjct:   717 EENYRNLGLEKVSGLSSELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGE 776

Query:   576 NSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFF 635
              SGF E L+ F+QNAEG IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF 
Sbjct:   777 ESGFREALEDFIQNAEGSIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFL 836

Query:   636 IMLDKACKQVKDAPKKSTKSLKKEGXXXXXXXXXXXXX-XXXLRHRLFPAITERRVEDFS 694
             I+LDK+CK+V++A  +  +  +K+G                  R +LFPAITERRV+  S
Sbjct:   837 IILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSS 896

Query:   695 SDEE 698
             SD +
Sbjct:   897 SDSD 900

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009960 "endosperm development" evidence=IMP

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0045010 "actin nucleation" evidence=IDA

GO:0048317 "seed morphogenesis" evidence=IGI

TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 3.9e-100, Sum P(3) = 3.9e-100
 Identities = 146/260 (56%), Positives = 184/260 (70%)

Query:   224 SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYX 283
             S+ S+    +GD +  K KLKP  WDKV A+ D + VW Q+KS SFQ NE+ +E LFG  
Sbjct:   443 SAGSLEKSGDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCN 502

Query:   284 XXXXXXXX--XXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELP 339
                           +       +++D KK+QN++I+LRALNVT EEV +AL +GN   L 
Sbjct:   503 SGSSAPKEPVRRSVIPLAENENRVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLG 562

Query:   340 AELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQ 399
             AEL++TL+KMAPT EEE+KLR ++G++S+LG AERFLK ++DIPF+FKR+EA+L+     
Sbjct:   563 AELLETLVKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFD 622

Query:   400 EEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL 459
              EV   + SF+ LE A  EL+ SRLFLKLLEAVL TGNRMN GT RG A AFKLDTLLKL
Sbjct:   623 AEVKYLRNSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKL 682

Query:   460 SDVKGVDGKTTLLHFVVQEI 479
              D+KGVDGKTTLLHFVVQEI
Sbjct:   683 VDIKGVDGKTTLLHFVVQEI 702

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 8.5e-96, Sum P(2) = 8.5e-96
 Identities = 151/256 (58%), Positives = 186/256 (72%)

Query:   232 AEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXX 291
             +E     PK KLK   WDKV A+ D  MVW  ++S SF+ +EEMIETLF           
Sbjct:   587 SEAAEETPKPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQ 646

Query:   292 XXXX----LDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQT 345
                     L +  Q  +++D KKAQN++I+LRALNVT+EEVC+ALLEGN   L  EL+++
Sbjct:   647 SQTTPRCVLPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLES 706

Query:   346 LLKMAPTAEEELKLRLFNGELS-QLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 404
             LLKMAPT EEE KL+ +N +   +LG AE+FLKA++DIPF+FKR++A+L++   + EV  
Sbjct:   707 LLKMAPTKEEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEY 766

Query:   405 TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 464
              K+SFE LE AC+ELRNSR+FLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKG
Sbjct:   767 LKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 826

Query:   465 VDGKTTLLHFVVQEII 480
              DGKTTLLHFVVQEII
Sbjct:   827 ADGKTTLLHFVVQEII 842

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
 Identities = 194/415 (46%), Positives = 257/415 (61%)

Query:   234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXX 293
             G   AP  KLKP  WDKV A PD +MVW ++++ SF+ +EEMIE+LFGY           
Sbjct:   462 GKDGAPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEG 521

Query:   294 XXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTA 353
                   P    +++ K+ QN +I+L+ALN T +++C AL +G  L  + ++ L+KM PT 
Sbjct:   522 KSKTPSPGK-HLLEPKRLQNFTILLKALNATADQICSALGKGEGLCLQQLEALVKMVPTK 580

Query:   354 EEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILE 413
             EEELKLR + G + +LG AE+FL+ALV +PF+F+R EA+L+  T ++EV   + SF +LE
Sbjct:   581 EEELKLRSYKGAVDELGSAEKFLRALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLE 640

Query:   414 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLH 473
              ACKEL++SRLFLKLLEAVLKTGNRMN GT RGGA+AFKLD LLKLSDVKG DGKTTLLH
Sbjct:   641 EACKELKSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLH 700

Query:   474 FVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSE 533
             FVVQEI                       +   EE       +E YR +GL  VS L++E
Sbjct:   701 FVVQEISRSEGIRVSDSIMGRIMNQRSNKNRTPEEK------EEDYRRMGLDLVSGLNTE 754

Query:   534 LENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGD 593
             L NVKK A ID + L  +VS L   L +     +  +K   EN  F  ++ SF++  E  
Sbjct:   755 LRNVKKTATIDLEGLVTSVSNLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKS 814

Query:   594 IMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQVK 646
             +  L E+EKRIM  V    +YFHG+   DE   LR+F IVRDF  MLD  C++++
Sbjct:   815 LEELREDEKRIMERVGEIAEYFHGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELR 869

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 195/429 (45%), Positives = 267/429 (62%)

Query:   223 HSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY 282
             HS     +  E      K KLK   WDKV A+    MVW QIKS SFQ NEEMIETLF  
Sbjct:   428 HSLPGDDSDPEKKVETMKPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVNEEMIETLF-- 485

Query:   283 XXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPA 340
                          + +  Q  + +D +K+ N++I+LRALNVT +EVC+AL+EGN   L  
Sbjct:   486 KVNDPTSRTRDGVVQSVSQENRFLDPRKSHNIAILLRALNVTADEVCEALIEGNSDTLGP 545

Query:   341 ELIQTLLKMAPTAEEELKLRLF----NGELSQLGPAERFLKALVDIPFSFKRLEALLFMC 396
             EL++ LLKMAPT EEE KL+      +G  S++GPAE+FLKAL++IPF+FKR++A+L++ 
Sbjct:   546 ELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAFKRIDAMLYIV 605

Query:   397 TLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 456
               + E+     SF+ LE A  EL+N+R+FLKLLEAVLKTGNRMN GT RG A AFKLDTL
Sbjct:   606 KFESEIEYLNRSFDTLEAATGELKNTRMFLKLLEAVLKTGNRMNIGTNRGDAHAFKLDTL 665

Query:   457 LKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSNETD 516
             LKL D+KG DGKTTLLHFVVQEII                      D++ E+++  ++ +
Sbjct:   666 LKLVDIKGADGKTTLLHFVVQEIIKFEGARVPFTPSQSHIG-----DNMAEQSAFQDDLE 720

Query:   517 EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN 576
                + LGLQ VS LSS+L NVKKAAA+D++SL    +++   + K ++ + T++K     
Sbjct:   721 --LKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI-TELKQETGV 777

Query:   577 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFI 636
               F E++ SF+   E +I  L      +M +VK   +YFHGN+ +    R+F +VRDF  
Sbjct:   778 ERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS-ETHPFRIFAVVRDFLT 836

Query:   637 MLDKACKQV 645
             +LD+ CK+V
Sbjct:   837 ILDQVCKEV 845

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
 Identities = 166/424 (39%), Positives = 245/424 (57%)

Query:   231 GAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXX 290
             GA G   + + KLKP  WDKV  + D+SMVW +I  GSF F+ +++E LFGY        
Sbjct:   294 GASGGETSKQVKLKPLHWDKVNPDSDHSMVWDKIDRGSFSFDGDLMEALFGYVAVGKKSP 353

Query:   291 XXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMA 350
                   +     I I+D +K+QN +I+L++L +T EE+ ++L+EGN+   + ++ L ++A
Sbjct:   354 EQGDEKNPKSTQIFILDPRKSQNTAIVLKSLGMTREELVESLIEGNDFVPDTLERLARIA 413

Query:   351 PTAEEELKLRLFNGELSQLGPAERFLKALV-DIPFSFKRLEALLFMCTLQEEVSATKESF 409
             PT EE+  +  F+G+ ++L  AE FL  L+  +P +F RL A LF      E++   +  
Sbjct:   414 PTKEEQSAILEFDGDTAKLADAETFLFHLLKSVPTAFTRLNAFLFRANYYPEMAHHSKCL 473

Query:   410 EILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKT 469
             + L++ACKELR+  LF+KLLEA+LK GNRMN GT RG AQAF L  LLKLSDVK VDGKT
Sbjct:   474 QTLDLACKELRSRGLFVKLLEAILKAGNRMNAGTARGNAQAFNLTALLKLSDVKSVDGKT 533

Query:   470 TLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTD-----DLLEETSKSNETDEHYRNLGL 524
             +LL+FVV+E++                     ++       L+  SK  E ++ Y  LGL
Sbjct:   534 SLLNFVVEEVVRSEGKRCVMNRRSHSLTRSGSSNYNGGNSSLQVMSKE-EQEKEYLKLGL 592

Query:   525 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 584
               V  LSSE  NVKKAA +D +++  T S L       +  +  + ++ GE   F +T+ 
Sbjct:   593 PVVGGLSSEFSNVKKAACVDYETVVATCSALAVRAKDAKTVIG-ECED-GEGGRFVKTMM 650

Query:   585 SFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNA---GKDEGLRLFTIVRDFFIMLDKA 641
             +F+ + E ++     EE+++M LVK T DY+   A   GK+  L LF IVRDF  M+DK 
Sbjct:   651 TFLDSVEEEVKIAKGEERKVMELVKRTTDYYQAGAVTKGKNP-LHLFVIVRDFLAMVDKV 709

Query:   642 CKQV 645
             C  +
Sbjct:   710 CLDI 713

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005522 "profilin binding" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

GO:0045010 "actin nucleation" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 173/440 (39%), Positives = 238/440 (54%)

Query:   222 KHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPD--NSMVWHQIKSGSFQFNEEMIETL 279
             K   +S+  G   D   PK  LKP  WDK+  NPD   SMVWH+I  GSF F+ +++E L
Sbjct:   444 KSGETSLAVGKTEDPTQPK--LKPLHWDKM--NPDASRSMVWHKIDGGSFNFDGDLMEAL 499

Query:   280 FGYXXXXXXXXXXXXXLDTGPQYIQ-----IIDQKKAQNLSIMLRALNVTLEEVCDALLE 334
             FGY               T    +      I+D +K+QN +I+L++L +T EE+ D L E
Sbjct:   500 FGYVARKPSESNSVPQNQTVSNSVPHNQTYILDPRKSQNKAIVLKSLGMTKEEIIDLLTE 559

Query:   335 GNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFL-KALVDIPFSFKRLEALL 393
             G++  ++ ++ L  +APT EE+ ++  F+GE   L  A+  L   L  +P +F R   +L
Sbjct:   560 GHDAESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKAVPSAFNRFNVML 619

Query:   394 FMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKL 453
             F      EV+  K S   LE AC ELR   LF+KLLEA+LK GNRMN GT RG AQAF L
Sbjct:   620 FKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNL 679

Query:   454 DTLLKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSN 513
               L KLSDVK VD KTTLLHFVV+E++                          E    S 
Sbjct:   680 TALRKLSDVKSVDAKTTLLHFVVEEVVRSEGKRAAMNKNMMSSDNGSG-----ENADMSR 734

Query:   514 ETDE-HYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKN 572
             E  E  +  +GL  +  LSSE  NVKKAA ID DS   T   LG  + +T+  L+   ++
Sbjct:   735 EEQEIEFIKMGLPIIGGLSSEFTNVKKAAGIDYDSFVATTLALGTRVKETKRLLD---QS 791

Query:   573 LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGL-RLFTIV 631
              G+  G    L+SF ++AE ++  + EE+ RIM LVK T +Y+   A K+  L +LF I+
Sbjct:   792 KGKEDGCLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGALKERNLFQLFVII 851

Query:   632 RDFFIMLDKACKQVKDAPKK 651
             RDF  M+D AC ++    +K
Sbjct:   852 RDFLGMVDNACSEIARNQRK 871

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 1.6e-67, Sum P(3) = 1.6e-67
 Identities = 109/229 (47%), Positives = 162/229 (70%)

Query:   255 PDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNL 314
             P   + W +++S S + ++EM+ET+F                D  P   Q++D +KAQN+
Sbjct:   428 PPKQLHWERLRSSSSKLSKEMVETMF--------IANSSNPRDL-PIQNQVLDPRKAQNI 478

Query:   315 SIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPA 372
             + +L+ LN++ ++VC ALL+G+   L AEL++ L ++AP+ EEE KL+ F+ + S++GPA
Sbjct:   479 ATLLQLLNLSTKDVCQALLDGDCDVLGAELLECLSRLAPSKEEERKLKSFS-DGSEIGPA 537

Query:   373 ERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAV 432
             ERFLK L+ +PF FKR++ALLF+     E+   ++SF +++VAC+ELRNSR+F  LLEA+
Sbjct:   538 ERFLKELLHVPFVFKRVDALLFVANFHSEIKRLRKSFSVVQVACEELRNSRMFSILLEAI 597

Query:   433 LKTGNRMNDGTFR-GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEII 480
             LKTGN M+  T R G A AFKLDTLLKL DVKG+DG+++LLHFVVQE++
Sbjct:   598 LKTGNMMSVRTNRCGDADAFKLDTLLKLVDVKGLDGRSSLLHFVVQEMM 646

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 3.3e-48, Sum P(3) = 3.3e-48
 Identities = 94/264 (35%), Positives = 150/264 (56%)

Query:   220 GQKHSSSSVGAGA-EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIET 278
             G+K S S +     EG  + PK KLKP  WDKV  +   +  W ++   S   N +    
Sbjct:   455 GKKLSFSELPQSCGEGTTDRPKPKLKPLPWDKVRPSSRRTNTWDRLPYNSSNANSKQ--- 511

Query:   279 LFGYXXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN-- 336
                              L    Q  +++D +K+QN++++L  L +T  +VC AL +G+  
Sbjct:   512 -----------RSLSCDLPMLNQESKVLDPRKSQNVAVLLTTLKLTTNDVCQALRDGHYD 560

Query:   337 ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFKRLEALLFM 395
              L  EL+++L ++AP+ EEE KL  ++ + + +L P+ERFLK L+++PF FKR++ALL +
Sbjct:   561 ALGVELLESLARVAPSEEEEKKLISYSDDSVIKLAPSERFLKELLNVPFVFKRVDALLSV 620

Query:   396 CTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT 455
              +   +V   K SF +++ AC+ LRNSR+ L+L+ A L+ G +       G A  FKL+ 
Sbjct:   621 ASFDSKVKHLKRSFSVIQAACEALRNSRMLLRLVGATLEAGMKS------GNAHDFKLEA 674

Query:   456 LLKLSDVKGVDGKTTLLHFVVQEI 479
             LL L D+K  DG+T++L  VVQ+I
Sbjct:   675 LLGLVDIKSSDGRTSILDSVVQKI 698

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

MGI|MGI:1194490 Diap1 "diaphanous homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 4.1e-28, Sum P(3) = 4.1e-28
 Identities = 77/252 (30%), Positives = 113/252 (44%)

Query:   239 PKTKLKPFFWDKVLANP-DNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXXXXLD 297
             P+ +L+   W K +A        W ++K   F+ NE   +    +              +
Sbjct:   758 PEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQ-E 816

Query:   298 TGPQY----------IQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQT 345
              G +           ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ 
Sbjct:   817 GGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQN 876

Query:   346 LLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSAT 405
             L+K  P  E+   L     E   L  +E+F   +  +P    RL A+LF     E+V   
Sbjct:   877 LIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENI 936

Query:   406 KESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV 465
             K     +  AC+ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  
Sbjct:   937 KPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSA 996

Query:   466 DGKTTLLHFVVQ 477
             D K TLLHF+ +
Sbjct:   997 DQKMTLLHFLAE 1008

GO:0003779 "actin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005522 "profilin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0031175 "neuron projection development" evidence=IDA

GO:0032587 "ruffle membrane" evidence=IDA

GO:0032886 "regulation of microtubule-based process" evidence=ISO

GO:0035372 "protein localization to microtubule" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0071420 "cellular response to histamine" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B77	FH5_ARATH	No assigned EC number	0.6741	0.8054	0.6255	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	699
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	1e-126
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	1e-100
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-13
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-13
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	5e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-11
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-10
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-10
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-09
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	2e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-09
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	4e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-09
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-08
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	6e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-07
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-07
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	1e-07
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	1e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-07
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-07
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	2e-07
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-07
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-07
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-07
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	3e-07
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	3e-07
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	3e-07
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-07
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	5e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-07
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	6e-07
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	7e-07
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	8e-07
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	9e-07
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-06
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	1e-06
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	1e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-06
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-06
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	1e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	2e-06
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-06
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-06
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	2e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-06
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	3e-06
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	3e-06
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	4e-06
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-06
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	5e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-06
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	6e-06
PHA03381	290	PHA03381, PHA03381, tegument protein VP22; Provisi	6e-06
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	7e-06
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	8e-06
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	8e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-06
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	8e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	9e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	9e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	1e-05
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	1e-05
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	1e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-05
pfam03251	458	pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote	1e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	1e-05
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	1e-05
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-05
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	2e-05
pfam04621	336	pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t	2e-05
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	2e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-05
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	2e-05
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	3e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	3e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-05
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	3e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-05
pfam11029	136	pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP	3e-05
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	3e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-05
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	4e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	4e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	4e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	4e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	5e-05
pfam14179	110	pfam14179, YppG, YppG-like protein	5e-05
pfam14179	110	pfam14179, YppG, YppG-like protein	5e-05
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	5e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	6e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	7e-05
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	7e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	7e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	7e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	7e-05
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	7e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	8e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	8e-05
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	8e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	1e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	1e-04
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	1e-04
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	1e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	1e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	2e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-04
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	2e-04
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	2e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	2e-04
pfam13908	177	pfam13908, Shisa, Wnt and FGF inhibitory regulator	2e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	2e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	2e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-04
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	2e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	2e-04
pfam04487	206	pfam04487, CITED, CITED	2e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	2e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	3e-04
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	3e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	3e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	3e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	3e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-04
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	4e-04
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	4e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	5e-04
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	5e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	6e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	6e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	6e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	6e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	6e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	6e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	6e-04
pfam07271	279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	6e-04
pfam07415	489	pfam07415, Herpes_LMP2, Gammaherpesvirus latent me	6e-04
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	6e-04
PRK13855	376	PRK13855, PRK13855, type IV secretion system prote	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	7e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	7e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-04
cd03784	401	cd03784, GT1_Gtf_like, This family includes the Gt	7e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	7e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	8e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	8e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	8e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	8e-04
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	8e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	9e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.001
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.001
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.001
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
pfam14179	110	pfam14179, YppG, YppG-like protein	0.001
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.001
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.001
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
pfam01690	460	pfam01690, PLRV_ORF5, Potato leaf roll virus readt	0.001
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	0.001
PRK00030	292	PRK00030, minC, septum formation inhibitor; Provis	0.001
pfam08549	669	pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown	0.001
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.001
pfam06482	291	pfam06482, Endostatin, Collagenase NC10 and Endost	0.001
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	0.001
pfam11162	119	pfam11162, DUF2946, Protein of unknown function (D	0.001
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.001
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.001
pfam00716	326	pfam00716, Peptidase_S21, Assemblin (Peptidase fam	0.001
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.002
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.002
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.002
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
COG3921	300	COG3921, COG3921, Uncharacterized protein conserve	0.002
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.002
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	0.002
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.002
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	0.003
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
PHA03381	290	PHA03381, PHA03381, tegument protein VP22; Provisi	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.003
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	0.003
cd03784	401	cd03784, GT1_Gtf_like, This family includes the Gt	0.003
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.003
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.003
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	0.003
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.003
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.003
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.004
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	0.004

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  377 bits (971), Expect = e-126
 Identities = 154/413 (37%), Positives = 208/413 (50%), Gaps = 47/413 (11%)

Query: 233 EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKK 292
           +     PK KLKP  WDKV    D   VW ++   SF+ + ++ E    +S K+K +K K
Sbjct: 1   KKKEPKPKKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSK 60

Query: 293 G----SSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 346
                SS     + I ++D K++QN++I+LR L +  EE+  A+LE +E  L  EL++ L
Sbjct: 61  KSEKKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENL 120

Query: 347 LKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATK 406
           LKMAPT EE  KL+ + G+ S+LG AE+FL  L  IP   +RLEALLF  T +EEV   K
Sbjct: 121 LKMAPTKEELKKLKEYKGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELK 180

Query: 407 ESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 466
            S E LE A +ELR SR F KLLE +L  GN MN GT RG A+ FKL +LLKLSD K  D
Sbjct: 181 PSLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTD 240

Query: 467 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQA 526
            KTTLLH++V+ I                                            L  
Sbjct: 241 NKTTLLHYLVKIIRE-----------------------------------------KLPD 259

Query: 527 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSF 586
           +   SSEL +V+KAA +D + L   V +L   L K    L     +   +  F E +K F
Sbjct: 260 LLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSALDEHPDDKFVEKMKEF 319

Query: 587 VQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLD 639
           ++ AE  +  L    K  M L K   +YF  +  +      F I+RDF  M  
Sbjct: 320 LEEAEEKLDKLESLLKEAMELFKELTEYFGEDPKETSPEEFFKILRDFLRMFK 372

Length = 372

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score =  312 bits (801), Expect = e-100
 Identities = 151/430 (35%), Positives = 213/430 (49%), Gaps = 55/430 (12%)

Query: 234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKG 293
                PK KLKP  WDK+  +  +  VW +I   S + + + +E LF   EK+K+  K  
Sbjct: 1   KKEPKPKKKLKPLHWDKLNPSDLSGTVWDKIDEES-EGDLDELEELFSAKEKTKSASKDV 59

Query: 294 SSLDTG-----PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 346
           S   +       Q  +I+D K++QNL+I+LR L+++ EE+ +A+LEG+E  L  +L++ L
Sbjct: 60  SEKKSILKKKASQEFKILDPKRSQNLAILLRKLHMSYEEIKEAILEGDEDVLSVDLLEQL 119

Query: 347 LKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSAT 405
           LK APT EE  KLR +  E   +L  AE+FL  + +IP+  +RL ALLF    +EEV   
Sbjct: 120 LKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDL 179

Query: 406 KESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV 465
           K   E +E AC+ELR S+ F KLLE +L  GN MN G+ RG A  FKL +LLKLSDVK  
Sbjct: 180 KPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSA 239

Query: 466 DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ 525
           D KTTLLHF+V+ I +                                         GL 
Sbjct: 240 DNKTTLLHFLVKIIRKKY-------------------------------------LGGLS 262

Query: 526 AVSHLSSELENV----KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFH- 580
              +L  +   V     KAA    D L   +S L     K  ++   D K+      F  
Sbjct: 263 DPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKD 322

Query: 581 --ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFI 636
             E LK F + AE +I    EEE+R   LVK T +Y   ++ + E      F + RDF  
Sbjct: 323 FNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLG 382

Query: 637 MLDKACKQVK 646
           +LD   +++ 
Sbjct: 383 VLDSLLEELG 392

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 36/75 (48%), Positives = 38/75 (50%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P    A+P P  PP S     P+   PPPPPPPA  P P P     APPPPP     PPP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 195 PPRGGPAPRPPPPMP 209
           PP    AP PP P P
Sbjct: 94  PPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 76.9 bits (189), Expect = 2e-14
 Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 114  PPLKPPPGRVGSTLQGMPPLKPPPGRAEPL-------PHEPPASLRPHPPSGPPPPPPPP 166
            PP  PP     +  + +PP +P P  +EP        P  PP S RP  P      P  P
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 167  PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP-SGSKVPRPPLGQKHSS 225
              P P P    AP   PPPP P P    P    P   PPP  P       R    ++   
Sbjct: 2612 APPSPLPPDTHAP--DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

Query: 226  SSVGAGAEGDANAPKTKLKP 245
                A A      P+ +   
Sbjct: 2670 LGRAAQASSPPQRPRRRAAR 2689

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.4 bits (186), Expect = 6e-14
 Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 17/167 (10%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGR--AEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           +L  L+    R+G       P    P    A P     PA+  P   + P P   P PAP
Sbjct: 374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP---------PPPMPSGSKVPRPPLG 220
            P PAPAP   A   P    P PPP       P P           P P+    P P   
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Query: 221 QKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLAN-PDNSMVWHQIKS 266
               ++        DA   + +     W ++LA  P  S     I  
Sbjct: 494 PAAPAAPAAPAGADDAATLRER-----WPEILAAVPKRSRKTWAILL 535

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.0 bits (179), Expect = 4e-13
 Identities = 39/111 (35%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 114  PPLKPPPGRVGSTLQGMPPLKPPPGR-AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP- 171
            PP + P  +  +      P +PP  R A P       S    PP  P  PP P   P P 
Sbjct: 2866 PPSRSPAAKPAA------PARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQ 2918

Query: 172  --PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 220
              P  P P    PPPPP P P PP  P   PA    P       VP+P LG
Sbjct: 2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS----GAVPQPWLG 2965

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 29/71 (40%), Positives = 31/71 (43%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           PA+    P   PPPP     AP P   P P P A PP P+P  P   PP     P  PPP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 208 MPSGSKVPRPP 218
            P     P PP
Sbjct: 94  PPVDPNAPPPP 104

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.9 bits (176), Expect = 8e-13
 Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 6/138 (4%)

Query: 114  PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
             P  P     GS   G    + PP R+       PA       + P           PP 
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Query: 174  APAPAPR-APPPPPKPGPPPPPPPRGGPAPRPP-----PPMPSGSKVPRPPLGQKHSSSS 227
             P   P+   PPPP+P P PPPPP+  P P PP     P  P+                 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963

Query: 228  VGAGAEGDANAPKTKLKP 245
            +GA   G    P+ ++  
Sbjct: 2964 LGALVPGRVAVPRFRVPQ 2981

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 68.9 bits (168), Expect = 5e-12
 Identities = 42/115 (36%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           + P   PPGR           +PP   PGRA P    P  +  P    G   PP   P  
Sbjct: 704 MRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 763

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV--PRPPLGQK 222
             PPA AP    P PPP+  P P   PRG P P+PPP     S    PR   GQ+
Sbjct: 764 ARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQ 818

Length = 991

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 69.2 bits (169), Expect = 7e-12
 Identities = 36/139 (25%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 114  PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
               +P  G + S     PP   P      L    P    P       P  P  PAP   P
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

Query: 174  APAPAPRAPPPPPKP----GPPPPPPPR---GGPAPRPPPPMPSGSKVPRPPLGQKHSSS 226
            A    P  P  P +P    GPP P PP     GP  R   P  +     R  L      +
Sbjct: 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

Query: 227  SVGAGAEGDANAPKTKLKP 245
               A     A A      P
Sbjct: 2806 DPPAAVLAPAAALPPAASP 2824

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 27/67 (40%), Positives = 29/67 (43%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
           PP  P      P    PPP P PA    P P  P   PPPPP    AP PPP  P+    
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

Query: 215 PRPPLGQ 221
           P P  G+
Sbjct: 104 PAPEPGR 110

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.4 bits (167), Expect = 1e-11
 Identities = 54/215 (25%), Positives = 64/215 (29%), Gaps = 20/215 (9%)

Query: 55   PVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLP 114
            P  PP    P   +       G         D    D      +        +    V P
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Query: 115  PLK----PPPGRV---------GSTLQGMPPLKPPPGRAEPLPHEPPASL-RPHPPSGPP 160
            P +    P PGRV         G   Q   P + P  RA         SL  P PP   P
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708

Query: 161  PPPPPP--PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR----GGPAPRPPPPMPSGSKV 214
             P P     A   PP PA A +A P  P    PP  P      GGPA    PP  +G   
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

Query: 215  PRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWD 249
            P PP                 + +   +  P  WD
Sbjct: 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 66.9 bits (163), Expect = 3e-11
 Identities = 38/119 (31%), Positives = 43/119 (36%), Gaps = 26/119 (21%)

Query: 111  QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
              LPP +P            PP    P   +P P  PP   +P PP  PPP P PP AP 
Sbjct: 2898 FALPPDQPER----------PPQPQAPPPPQPQPQPPPPP-QPQPPPPPPPRPQPPLAPT 2946

Query: 171  PPPAPAPAPRAPPPPPKPGP-------------PPPPPPRGGPAPRPPPPMPSGSKVPR 216
              PA A  P    P P  G              P P P R   AP    P  +G  + R
Sbjct: 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR--EAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 42/165 (25%), Positives = 49/165 (29%), Gaps = 13/165 (7%)

Query: 93  TASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPA 149
           TA+   V   A +        P    PP    +        +     P R  P P E  A
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP-EALA 434

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP----- 204
           + R     GP   P P PAP   PA A  P A  P P        P R  PA  P     
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494

Query: 205 -PPP---MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
            PPP   +P     P P       +  V       A A       
Sbjct: 495 DPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

Length = 700

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 30/69 (43%), Positives = 31/69 (44%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
           P   PPP         P A   P PP+ PP P P  P   PPP PA     PPPP  P  
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 191 PPPPPPRGG 199
           PPPP P  G
Sbjct: 101 PPPPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 98  AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 157
            V  T    +  G+   P    P    S+  G+P    PP           +SL P P S
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS---PSDSSLPPAPSS 218

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
                PPP P     P+P P P APPPPP    PP    +  P      P P G      
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Query: 218 ---PLGQKHSSSSVGA 230
                 QKH+  ++ A
Sbjct: 279 DAIAKAQKHAKWAISA 294

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 65.7 bits (161), Expect = 6e-11
 Identities = 21/93 (22%), Positives = 23/93 (24%), Gaps = 5/93 (5%)

Query: 127 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 186
                P       A        A           P    P AP P P  A AP APP P 
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAA-----SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA 87

Query: 187 KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
                   P     A     P  +  +    PL
Sbjct: 88  AAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 30/125 (24%), Positives = 36/125 (28%), Gaps = 4/125 (3%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA- 176
           P         Q  P    P   A P P  PPA+    P +            R  PAP  
Sbjct: 374 PATAAAAPVAQPAPAAAAPAA-AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 177 --PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 234
              A +A    P   P P P P   PA    P       V          ++   A A  
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 235 DANAP 239
           D + P
Sbjct: 493 DDDPP 497

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 64.5 bits (158), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 23/88 (26%), Gaps = 5/88 (5%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 178
           P      T             A     + PA+  P PP+   P  PP PA     A APA
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 179 PRAPPPPPKPGPPPPPPP-----RGGPA 201
                                  RG  A
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 25/120 (20%), Positives = 33/120 (27%), Gaps = 6/120 (5%)

Query: 126 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 185
            L  +   KP        P E     RP   +    P     A   P A   A  + P  
Sbjct: 357 VLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA 416

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
           P    PP P      A     P  + + V   P      +    A  E  A   +   +P
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP------APPAQAAPETVAIPVRVAPEP 470

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 27/114 (23%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
           P    P           PA     P +    P  PP A  P P  APA  AP   P   P
Sbjct: 384 PEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

Query: 191 -----PPPPPPRGGPAPRPPPPM---PSGSKVPRPPLGQKHSSSSVGAGAEGDA 236
                 P PP +  P     P             P      +++ +    EGD 
Sbjct: 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 63.4 bits (154), Expect = 3e-10
 Identities = 38/134 (28%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 115  PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP--------PPPP 166
            P  P   R  S      P  P        P  P    RP   +GPP P         PP 
Sbjct: 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

Query: 167  PAPRPPPAPA-------PAPRAPPPPPKPGPPPPP--PPRGGPAPRPPPPMPSGSKVPRP 217
               RP  A         P+P  P  PP     P    PP   PA   PPP  +    P P
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841

Query: 218  PLGQKHSSSSVGAG 231
            P G    S  +G  
Sbjct: 2842 PPGPPPPSLPLGGS 2855

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 31/154 (20%), Positives = 36/154 (23%), Gaps = 12/154 (7%)

Query: 98  AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEP-PASLRPHPP 156
            VG    +    G   P    PP           P  P           P  AS  P P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 157 SGPPPPPP-----------PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
              P   P               P      APA   P P P     P       PAP P 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 206 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
              P+G          + +  +       D   P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.4 bits (155), Expect = 3e-10
 Identities = 19/81 (23%), Positives = 21/81 (25%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           P S      +              P A APA  AP PP    P  PP P    A    P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 208 MPSGSKVPRPPLGQKHSSSSV 228
            P  +     P          
Sbjct: 98  APPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 63.7 bits (155), Expect = 3e-10
 Identities = 39/151 (25%), Positives = 52/151 (34%), Gaps = 15/151 (9%)

Query: 90  FDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPA 149
            +  A     G  A    E     PP  PPPG         P  + P   +   P    +
Sbjct: 48  AELAAVTVVAGAAACDRFE-----PPTGPPPG---------PGTEAPANESRSTPTWSLS 93

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           +L P  P+    P PP P+   PP P P P +PPP P P       P G P P P    P
Sbjct: 94  TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

Query: 210 -SGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
            +G+           S  +    +  +  A 
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETAR 184

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 28/132 (21%), Positives = 36/132 (27%), Gaps = 9/132 (6%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P    P     +     PP  P P  +E L         P          P   A     
Sbjct: 109 PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS 168

Query: 174 APAPAP---------RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHS 224
           +   A          RAP  PP   PP  PP    P P       S S     P   + +
Sbjct: 169 SRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSA 228

Query: 225 SSSVGAGAEGDA 236
           +   GA +   +
Sbjct: 229 ADDAGASSSDSS 240

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.7 bits (153), Expect = 4e-10
 Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH--PPSGPPPPPPPPPAPRPPPAP 175
            P G   +     P   PP G+A+    +PP + +    P      P P PP P  PP P
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

Query: 176 APAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           A AP  PPPPP P P   P     P+P       
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 62.9 bits (153), Expect = 5e-10
 Identities = 36/147 (24%), Positives = 42/147 (28%), Gaps = 14/147 (9%)

Query: 107 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGR----AEPLPHEPPAS---LRPHPPSGP 159
                +       P R GS     P    PP      A P P   P     LRP    GP
Sbjct: 87  TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP 146

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPP-------PPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
           PP   PP A   P A A    +          P +    P  PP   P   PP       
Sbjct: 147 PPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206

Query: 213 KVPRPPLGQKHSSSSVGAGAEGDANAP 239
                P+    SS +   G     +A 
Sbjct: 207 PRRSSPISASASSPAPAPGRSAADDAG 233

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 38/141 (26%), Positives = 46/141 (32%), Gaps = 26/141 (18%)

Query: 109 NGQVLPPLKPP---------PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP 159
             QVLP   PP         P          P   P   + +     P  +    P    
Sbjct: 176 PQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235

Query: 160 PPPPPPP------------PAPRPPPAPA-----PAPRAPPPPPKPGPPPPPPPRGGPAP 202
            P  PPP              P PP  P      P P+A PPP     P P  P+G  AP
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP 295

Query: 203 RPPPPMPSGSKVPRPPLGQKH 223
            PPP  P    + + P GQ+ 
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQR 316

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.3 bits (152), Expect = 6e-10
 Identities = 33/154 (21%), Positives = 39/154 (25%), Gaps = 6/154 (3%)

Query: 92  GTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL 151
              +  A  G A +  E      P    P      +          G         PA+ 
Sbjct: 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP 681

Query: 152 RPHPPSGPPPPP----PPPPAPRPP--PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
            P P    P  P    P  PAP P   P    A      PP+       P      P P 
Sbjct: 682 PPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741

Query: 206 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
           PP P     P     Q     +    A   A  P
Sbjct: 742 PPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775

Length = 824

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.1 bits (151), Expect = 6e-10
 Identities = 27/161 (16%), Positives = 38/161 (23%), Gaps = 12/161 (7%)

Query: 103 AKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP 162
           A+   +         P         Q       P   A   P    +S    P +   P 
Sbjct: 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAA-PQPSAAAAASPSPSQSSAAAQPSA---PQ 415

Query: 163 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
               PA  PP      P A P  P    P    P      +  P     S  P      +
Sbjct: 416 SATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQ 475

Query: 223 HSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQ 263
             +      A G+     T  +   +       D    W +
Sbjct: 476 EKA----EQATGNIKEAPTGTQKEIFT----EEDLQYYWQE 508

Length = 614

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPPP-PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
               A   P +PP+S    P    PP  P  P     PPAP+      PPP    P  P 
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPS 235

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGD 235
           PP G  AP PPP           P     S++    G    
Sbjct: 236 PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 115 PLKPPPGRVGSTLQGMPPL------KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 168
           PL P PG        MP        +PP G AE +     A+    P +  PP  P  P 
Sbjct: 42  PLVPKPGDRDEP-DMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE 100

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
           P P   P P P    P PKP P         P P P P +         P G+
Sbjct: 101 PAPVEPPKPKPV-EKPKPKPKPQQKVEAPPAPKPEPKPVVEE----KAAPTGK 148

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 61.7 bits (150), Expect = 9e-10
 Identities = 29/124 (23%), Positives = 35/124 (28%), Gaps = 4/124 (3%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           PP  PPP      L  M      PG           +      S              P 
Sbjct: 122 PPASPPP-SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ---KHSSSSVGA 230
             A AP +PP  P P  PP       P    P    + S  P P         +SSS  +
Sbjct: 181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSS 240

Query: 231 GAEG 234
            +E 
Sbjct: 241 SSES 244

Length = 1352

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 61.4 bits (150), Expect = 1e-09
 Identities = 18/79 (22%), Positives = 19/79 (24%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
             GST             A      P A     P   PP    P   P+P  A A A   
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 182 PPPPPKPGPPPPPPPRGGP 200
             PP       P       
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 27/129 (20%), Positives = 33/129 (25%), Gaps = 9/129 (6%)

Query: 100 GGTAKSFNENGQVLPPLKPPPG--RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 157
              A +  E      P    P    V        P   P   A       P +  P  P 
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA--APPAAAPPAPV 426

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-----PPPRGGPAPRPPPPMPSGS 212
             P    P  AP   PA      APP    P          P P    A   P   P+ +
Sbjct: 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Query: 213 KVPRPPLGQ 221
           ++     G 
Sbjct: 487 RLTPTEEGD 495

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 24/99 (24%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P P  A+P    P        PS  P        P   P    A   P PP    PP P 
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 195 PPRGGPA-PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 232
            P   P   R   P+    K   P   ++   + +  G 
Sbjct: 424 TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 35/77 (45%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPGPPPPPPPRGGPA-----PRPP 205
           R    S  PP  P PP P PP +P  +P   PP PP PG  PPP    GPA     PR  
Sbjct: 3   RARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGC 62

Query: 206 PP--MPSGSKVPRPPLG 220
           P     S S  PRPPLG
Sbjct: 63  PAGVTFSSSAPPRPPLG 79

Length = 318

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 23/96 (23%), Positives = 29/96 (30%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
                       P E        P   P   P  P  P PP  P+    +  PP      
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220

Query: 192 PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
              PP    +P  P P P  +  P PP+ Q    S+
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLST 256

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.0 bits (145), Expect = 4e-09
 Identities = 46/144 (31%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 109  NGQVLPPLKPPPGRVGST---LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP-PP 164
             G   P     P R  +T       PP  P  G    L     ASL     S P P  P 
Sbjct: 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

Query: 165  PPPAPRPPPAPA-PAPRAP----PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
             PPA    PA A P   +P    PPP    P  PPPP   P P PP     GS  P   +
Sbjct: 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP---PGPPPPSLPLGGSVAPGGDV 2862

Query: 220  GQKHSSSSVGAGAEGDANAPKTKL 243
             ++  S S  A     A  P  +L
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRL 2886

Length = 3151

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.3 bits (143), Expect = 4e-09
 Identities = 42/122 (34%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP--- 191
            P G A   P    A+  P  P    P    P A   P + APA  AP   P P  P   
Sbjct: 380 APSGSAAEGPASGGAATIP-TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 192 -PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDK 250
            PP PPR G  PRP P MP  S VP  P     +S +     +    A  T   P  WD 
Sbjct: 439 APPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRTWDG 498

Query: 251 VL 252
            L
Sbjct: 499 FL 500

Length = 624

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 52/115 (45%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPA---P 169
           PPP   G T    PP  P      P P  P  +  P PP  P     PPPPP P A   P
Sbjct: 26  PPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIP 85

Query: 170 RPPPAPAPAPRAPPPPPKPG----PPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 220
            PPP P  A   PPPPP PG    PPPPP P G   P PPPP P    +P PP G
Sbjct: 86  PPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPG 140

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.0 bits (143), Expect = 5e-09
 Identities = 26/120 (21%), Positives = 31/120 (25%), Gaps = 7/120 (5%)

Query: 124 GSTLQGMPPLKPP--PGRAEPLPHEPPASLRPHPPSGPPPPPPP--PPAPRPPPAPAPAP 179
            +        K P  P  A P         +      P   P         PP A  PAP
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVA---QAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 180 RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
            A P    P   P   P        PP   +   V  P       + +  A A   A A 
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP-AP 202
           P   P   +P   +  P P  P PAP   P  A A   PP  P      PPP    P AP
Sbjct: 362 PVPAPQPAKPTAAA--PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419

Query: 203 RPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
             P    S  K+ R       ++  V    +    AP
Sbjct: 420 PVPHTPESAPKLTR-------AAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 6/116 (5%)

Query: 112 VLPPLKPPPGRVGSTLQGMPP---LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 168
           V     P P        G P      P    A        A   P  P+        P A
Sbjct: 638 VFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQA 697

Query: 169 PRPPPAPA---PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
           PRP   P      P  P  P   GP P           PP P P G++       Q
Sbjct: 698 PRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.6 bits (142), Expect = 8e-09
 Identities = 40/211 (18%), Positives = 56/211 (26%), Gaps = 22/211 (10%)

Query: 57  LPPLPLAPHKILSLSDYSVGSGNSKEEKLDIG-KFDGTASFGAVGGTAKSFNENGQVLPP 115
             P P      +S S  S      +    D G     ++S  + G      NE     P 
Sbjct: 202 ASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPA 261

Query: 116 LKPPPGRV--GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP-------- 165
               P R+   S   G      P   +       P+     P SGP P  P         
Sbjct: 262 PITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321

Query: 166 -----------PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
                        + R          +  P P   PPP  P      PRP     S +  
Sbjct: 322 RESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381

Query: 215 PRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
              P  ++  ++  G     DA       +P
Sbjct: 382 AGRPTRRRARAAVAGRARRRDATGRFPAGRP 412

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
                    P     +     P        A+P P  P A+        P   PP     
Sbjct: 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA-PAATPPAGQADDPAAQPPQAAQG 727

Query: 170 RPPPAPAPAPRAPPPP-PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
              P+PA     P PP P   P P   P   P P  P P  + +  P P 
Sbjct: 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.4 bits (142), Expect = 1e-08
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
           P     P A     A A +  A  P  K    P P P    AP  PP  P+ +       
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAAAAAAAP 96

Query: 220 GQKHSSSSVGAGAEGDANAPKTKLK 244
               ++++  A A        T L+
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 31/139 (22%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 106 FNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP 165
               GQ++                      PP    P    P      +     P     
Sbjct: 37  SGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP---GPGTEAPANESRSTPTWSLS 93

Query: 166 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS-----GSKVPRPPLG 220
             AP  P     +P  P P     PPP PPP   P P P P +       GS  P P   
Sbjct: 94  TLAPASPA-REGSPTPPGPSSPDPPPPTPPP-ASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

Query: 221 QKHSSSSVGAGAEGDANAP 239
              + +S  A A   A++ 
Sbjct: 152 PPAAGASPAAVASDAASSR 170

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 34/133 (25%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPP------PPPPPPA 168
           P   P   +   L+ +    PPP  + P     PA++     S          P     A
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS-S 227
           P  PPA  P P  PP    P PP    P    A  P P     +           SSS S
Sbjct: 186 PSSPPAEPP-PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSES 244

Query: 228 VGAGAEGDANAPK 240
            G G   +   P 
Sbjct: 245 SGCGWGPENECPL 257

Length = 1352

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 50/111 (45%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP-----SGPPPPPPPPPAPRPP 172
           PPP   G  +   PPL        P P      + P PP     + PPPPP P  A  PP
Sbjct: 3   PPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPP 62

Query: 173 PAPAPAPRA-PPPPPKPG----PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P P P   A PPPPP PG    PPPPP P G   P PPPP+P G+ VP PP
Sbjct: 63  PPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPP 113

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 3e-08
 Identities = 34/145 (23%), Positives = 41/145 (28%), Gaps = 12/145 (8%)

Query: 114  PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPA 168
            PP   P     + +   P    P    +  P  P A   P  P+GP     P  P  PP 
Sbjct: 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762

Query: 169  PRPPPAPAPAPRAPPPPPKPGPPPPP------PPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
               PPAPAP P AP   P      P            P+P  P   P+    P   L   
Sbjct: 2763 TAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

Query: 223  HSSSSVGAGAEGDANAPKTKLKPFF 247
             S +                     
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPP 2846

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
           P P     T     P++P P  +        A++ P  P      PPP P   P P   P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP---PRPVAPP 420

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
            P  P   P        P    P   PP P     K 
Sbjct: 421 VPHTPESAP-KLTRAAIPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP-PPAPAPAPRAPPPPPKPGPPPP 193
           P P  A      P A   P P + PP PP  P  P    PAPAPAP A   PP     P 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 194 PPPRGGPA 201
                G  
Sbjct: 442 AAASAGDR 449

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.5 bits (136), Expect = 5e-08
 Identities = 35/132 (26%), Positives = 38/132 (28%), Gaps = 24/132 (18%)

Query: 113  LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
            LPP  PP           P    PP R  P P EP  + R   P  PP    P       
Sbjct: 2555 LPPAAPPAA---------PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPR------ 2599

Query: 173  PAPAPAPRAPP-PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAG 231
                 AP      P  P PP P PP       P PP PS S     P      +      
Sbjct: 2600 -----APVDDRGDPRGPAPPSPLPP---DTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651

Query: 232  AEGDANAPKTKL 243
               D    +   
Sbjct: 2652 PRDDPAPGRVSR 2663

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 5e-08
 Identities = 23/102 (22%), Positives = 24/102 (23%), Gaps = 2/102 (1%)

Query: 139 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 198
            A   P    A     P      PP     P  P APA      P       P       
Sbjct: 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGA-AAAPAEASAAP 643

Query: 199 GPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA-EGDANAP 239
            P    P   P    VP    G     +  G  A      AP
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAP 685

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 33/141 (23%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP- 173
           P +  P             + P G   P P    A      P+   P P    A   P  
Sbjct: 423 PARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPAR 482

Query: 174 -----APAPAPRAPPP----PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHS 224
                APAPA   PPP    PP+   P P  P   PA      +P  +        +  +
Sbjct: 483 AAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542

Query: 225 SSSVGAGAEGDANAPKTKLKP 245
            +   A A   A A +  + P
Sbjct: 543 PAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.3 bits (136), Expect = 5e-08
 Identities = 36/107 (33%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP---SGPPPPPPPPPAPR 170
           P   P         +     K  P  A           RP PP   + P    PP  A  
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894

Query: 171 PPPAPAPAPRAPPPPPKP-GPPPP--PPPRGG----PAPRPPPPMPS 210
            PPA APAPR  P P    GP PP  P PRGG    P      P PS
Sbjct: 895 APPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 30/78 (38%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P  PPP                P  A P P  PPA+     P  P   PPPPPA   P A
Sbjct: 43  PPPPPP----------STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPA--DPNA 90

Query: 175 PAPAPRAPPPPPKPGPPP 192
           P P P  P  PP P P P
Sbjct: 91  PPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 6e-08
 Identities = 48/174 (27%), Positives = 56/174 (32%), Gaps = 38/174 (21%)

Query: 94   ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGST-LQGMPPLKPPPGR------------- 139
            A F    G A      G   P   P P R+    L   P  +P   R             
Sbjct: 2486 ARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELAS 2545

Query: 140  ---AEPLPHEPPASLRPHPP-SGPPPPPPPPPA----------PRPPPAPA--PAPRAPP 183
                +P P  PPA+    P  S PPP P P P+          P  PP  A   AP    
Sbjct: 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR 2605

Query: 184  PPPKPGPPPPPPPRGGPAPRPPPPMPS--------GSKVPRPPLGQKHSSSSVG 229
              P+   PP P P    AP PPPP PS              PP  +     + G
Sbjct: 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659

Length = 3151

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 55.4 bits (133), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 18/59 (30%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
             PA      PS     P P PA R P A    P   P P K   P    P       P
Sbjct: 208 AEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.7 bits (134), Expect = 7e-08
 Identities = 31/103 (30%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           G+  P     P R     +       P  R  P   +      P P S P P P P PA 
Sbjct: 371 GRHHPKRASLPTR---KRRSARHAATPFARG-PGGDDQTRPAAPVPASVPTPAPTPVPAS 426

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
            PPP   P P A P       PPP      PA  P P  P  +
Sbjct: 427 APPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.4 bits (134), Expect = 9e-08
 Identities = 32/129 (24%), Positives = 36/129 (27%), Gaps = 1/129 (0%)

Query: 91  DGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKP-PPGRAEPLPHEPPA 149
              AS G  G  AK+        PP   P               P P         + PA
Sbjct: 659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPA 718

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           +  P    G   P P    P P P     P  P   P   PPPP P         PPP P
Sbjct: 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSP 778

Query: 210 SGSKVPRPP 218
              +     
Sbjct: 779 PSEEEEMAE 787

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 20/106 (18%), Positives = 24/106 (22%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
            P       P  P +S  P   + P  P  P     P PA A A  A            P
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAP 650

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 240
                    P           +       +     A A   A A  
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 120 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 179
           P +V  T       +      +P P      L      G   PPP  P P  PPA  P  
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713

Query: 180 RAPP-------PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
              P        PP   P    PP   P    PP    G   P
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 26/112 (23%), Positives = 30/112 (26%), Gaps = 12/112 (10%)

Query: 128 QGMPPLKPPPG-----RAEPLPHEPPASLRPHPPSGPPPPPPPPP-----APRPPPAPA- 176
           +G  P   PP       A+        S            P  PP      P  P  P  
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 177 -PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
             +P     PP P       P   P     P  P G   P PP  Q+    S
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS 255

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 31/113 (27%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 125 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA------PRPPPAPAPA 178
            T  G      P          PPA       S P               PRPP   A  
Sbjct: 824 HTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARP 883

Query: 179 PRAPPPPPKPGPPPPPPPRGGPAPRPPP---PMPSGSKVP-----RPPLGQKH 223
             A PP      PP   P   P P P     PMP G   P     R P G  H
Sbjct: 884 GAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLH 936

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 28/110 (25%), Positives = 35/110 (31%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           PPL P   +    LQ             P P  P    +P  P   PPP   P      P
Sbjct: 230 PPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP 289

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 223
               AP  PP  P+  P    P      P+    +   S+  R  L Q+ 
Sbjct: 290 QGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEE 339

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 20/66 (30%), Positives = 20/66 (30%)

Query: 139 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 198
           R  P P               PPP   PP P   PA   A R  P P  P    PP    
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 199 GPAPRP 204
            PA   
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRA--EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
              PPP               PPG +   P     P +  P     P  P P P  P  P
Sbjct: 186 IQPPPPS---------SLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPP 196
           PA  PAP  PP      PPP PPP
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-PPPMPSGSKVPRP 217
           PP    PPP P   P P P P   PP   P   P P P+  P P+P P P+    + P+ 
Sbjct: 60  PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119

Query: 218 PL 219
            +
Sbjct: 120 EV 121

Length = 246

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 147 PPASLRPHPPSGPPPPP----PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
             A     PP G P PP    PPP +      P   P APPP P+P  P P  P    AP
Sbjct: 33  ESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAP 92

Query: 203 RPPPPMPSGSKVPRPPLG 220
             P       K P PP  
Sbjct: 93  PAPA-----RKPPLPPPR 105

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 31/109 (28%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 114 PPLKPPP--GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           PP   PP    +  +         PP   +     P AS   HP SG    PP  P  + 
Sbjct: 398 PPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKAS--THPHSGLHSGPPQSPFAQH 455

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP--PPMPSGSKVPRPP 218
           P      P   PPP  P   P  PPR     +PP      SG      P
Sbjct: 456 PFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGP 504

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.6 bits (131), Expect = 2e-07
 Identities = 47/188 (25%), Positives = 54/188 (28%), Gaps = 71/188 (37%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGR----------------------AEPLPHE----- 146
               PP G  G+ L G P   P P                          PLP       
Sbjct: 289 GAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYP 348

Query: 147 ------------PPASL------RPHPPSGPPP-------------------------PP 163
                       PP+SL      R HP     P                         P 
Sbjct: 349 LGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPA 408

Query: 164 PPPPAPRPPPAPAPAPR-APPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
            P PA  P PAP P P  APPPP  P P   P    GPAP P    P+ +  P P     
Sbjct: 409 APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDD 468

Query: 223 HSSSSVGA 230
            +  ++ A
Sbjct: 469 ATRKALDA 476

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 54.7 bits (131), Expect = 2e-07
 Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-PPPPPPPPAPRPPP 173
             +PP    G       P    PGRA P    P  +  P    G   PP   P AP P P
Sbjct: 723 RARPPAAAPGR----ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP 778

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAP-RPPPPMPSGSKVPRPPLGQKHSSSSVGAG 231
            P  AP AP   P+  P P PPP+ GP   +  P    G + P   + ++  +  V  G
Sbjct: 779 PPQ-APPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRG 836

Length = 991

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 2e-07
 Identities = 35/143 (24%), Positives = 42/143 (29%), Gaps = 14/143 (9%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLR---PHPPSGPPPPP-----PP 165
           P   P        +   P  + P   A     +  A      P P   P   P     P 
Sbjct: 406 PAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465

Query: 166 PPAPRPPPAPA---PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
              PRP  A A   PA  AP   P P    PPP    P   P    P+ ++    P G  
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP---PEFASPAPAQPDAAPAGWV 522

Query: 223 HSSSSVGAGAEGDANAPKTKLKP 245
             S    A A+ D         P
Sbjct: 523 AESIPDPATADPDDAFETLAPAP 545

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
            PA+    P + P P    P A  P PA  PA  A  P               PA R P 
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA---AAAARAVAAAPARRSPA 429

Query: 207 PMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 241
           P    +       G   + +   A A   A A + 
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 12/110 (10%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPA--SLRPHPPSGPPPPPPPPPA--- 168
            P    P  V +     P    P     P   +PP    L P   S  P  P   PA   
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 169 ----PRPPPAPAPAPR---APPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
               P P  A         AP P   P P          APRPP    SG
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/110 (24%), Positives = 31/110 (28%), Gaps = 6/110 (5%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP--HEPPASLRPHPPSGPPPPPPPPPAPRP 171
           P   P      +        +P    A   P    P A+  P     PP    PP    P
Sbjct: 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Query: 172 PPA---PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP-PMPSGSKVPRP 217
            PA    APA       P P    P       AP P   P P  +    P
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559

Length = 700

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 23/72 (31%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
               P  P A+     P+ P  PPP    P PP APA    A P P    P    PP   
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 200 PAPRPPPPMPSG 211
             P         
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P     +  P        P PP    PPP       PPP+   AP   P PP PGP  PP
Sbjct: 32  PESAHPDDPPPVGD----PRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPP 87

Query: 195 PPRGGPAPRPPPPMPS 210
            P   PAP   PP+P 
Sbjct: 88  SPLAPPAPARKPPLPP 103

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 23/98 (23%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
            Q  PP      R          + P        P   P     + P    P   P   P
Sbjct: 90  HQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVS-P 148

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           +  PAP P   AP P  +   P  P     P P   P 
Sbjct: 149 QVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186

Length = 333

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 31/116 (26%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 92  GTASFGAVGGTAKSFNENGQVL----PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEP 147
           G A+F A G  A      G       P L     R+G     +P    P  R    P   
Sbjct: 162 GLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETT 221

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
           P       P     P P      P     P     P PP PG    PP    PAP 
Sbjct: 222 PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE 277

Length = 401

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           E LP  PP +    P     PPPP    P  PPA  PAP AP   P P P  PPP +   
Sbjct: 139 EALPQPPPPA----PVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPK 194

Query: 201 APRPP 205
           +  PP
Sbjct: 195 SSHPP 199

Length = 274

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 33/138 (23%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 115 PLKPPPGRVGSTLQGM----PPLKPPPGRAEPLPHE-------PPASLRPHPPSGPPPPP 163
           P + PP +V S  Q       P  PPP + +P P +        P    P       PP 
Sbjct: 99  PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQ 158

Query: 164 PPPPAPRPPPAPAPAPRAPP--PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
            P     PPP    AP+     P   P  P   PP     P P            PP  Q
Sbjct: 159 QPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPN---EPLPSSMAMQPPYSGAPPSQQ 215

Query: 222 KHSSSSVGAGAEGDANAP 239
            +          G     
Sbjct: 216 FYGPPQPSPYMYGGPGGR 233

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
              K PP   +  P   P    P P +  PPP PPPP   PP A   +  AP   P    
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP---PPTATQASSNAPAQIPADSS 575

Query: 191 PPPPPPRGGPAPRPPPPMPS 210
           PPPP P     P P P   S
Sbjct: 576 PPPPIP---EEPTPSPTKDS 592

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.2 bits (130), Expect = 3e-07
 Identities = 31/114 (27%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 98   AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP-P 156
            AV  + +SF            P        Q  PP  P P    P P  P   L P   P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

Query: 157  SGPPPPPPPPPAPR-----PPPAPAPAPRAPPP-PPKPGP-PPPPPPRGGPAPR 203
            +G   P    P P      P     P  R P P P +  P    PP  G    R
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 3e-07
 Identities = 25/125 (20%), Positives = 30/125 (24%), Gaps = 7/125 (5%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP-PPAPRPPPAPA 176
           P PG  G       P    P      P  P A   P  P+       P   +  P P  A
Sbjct: 590 PAPGAAGGEGPP-APASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 177 PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 236
                P     P            A    P  P  +  P  P        +  A A+   
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA-----PAGAAPAQPAP 703

Query: 237 NAPKT 241
               T
Sbjct: 704 APAAT 708

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 21/62 (33%), Positives = 22/62 (35%)

Query: 157 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
             PP      P P  P AP PA   P PP  P  P    P   PAP      P+ S  P 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 217 PP 218
             
Sbjct: 442 AA 443

Length = 576

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 53.5 bits (128), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 5/67 (7%)

Query: 149 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
           A+         P P      P P PA      AP PP     P          P    P+
Sbjct: 205 AAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAA-----PAAAAPV 259

Query: 209 PSGSKVP 215
            SG   P
Sbjct: 260 SSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/67 (41%), Positives = 32/67 (47%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
           PP+  P       P    A     PPS P  PPP P  P P PA  P+P APP P +  P
Sbjct: 41  PPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPP 100

Query: 191 PPPPPPR 197
            PPP P+
Sbjct: 101 LPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 26/78 (33%), Positives = 29/78 (37%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
           PL P PG+    P +      P P   P  P P  P     P     P  P PP  P PP
Sbjct: 72  PLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPP 131

Query: 192 PPPPPRGGPAPRPPPPMP 209
            PP     P P   P +P
Sbjct: 132 LPPMFPMQPLPPLLPDLP 149

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 38/140 (27%), Positives = 44/140 (31%), Gaps = 33/140 (23%)

Query: 106 FNENGQVLPP-------LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSG 158
           F  +G V+PP        +PPP   G +         PPG   P     P  +    P  
Sbjct: 247 FMRHGGVVPPYFEESKGYEPPPAPSGGS-------PAPPGDDRPEAKPEPGPVEDGAPGR 299

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-------PPPMPSG 211
                   P P           A    PKPGPP P P    P   P       PPP P+ 
Sbjct: 300 ETGGEGEGPEPAGRDG------AAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPAT 353

Query: 212 SKVPRPPLGQKHSSSSVGAG 231
             VPR           VG G
Sbjct: 354 PAVPR------ARPVIVGTG 367

Length = 416

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
              P PP P      PPPA   AP      P    P    P+     R   P P+
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Length = 475

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 53.1 bits (127), Expect = 4e-07
 Identities = 37/127 (29%), Positives = 46/127 (36%), Gaps = 24/127 (18%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPPASLRPHPPSGPPPPPPP--PPAP 169
           P ++  P +   T  G  P +P P  A         P +++P PP  P P  PP  PP  
Sbjct: 655 PQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQP-PPRAPTPMRPPAAPPGR 713

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPP------------------PPRGGPAPRPPPPMPSG 211
              PA A    A PP   PG   PP                  PP   P    PP    G
Sbjct: 714 AQRPAAATGR-ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772

Query: 212 SKVPRPP 218
           +  P+PP
Sbjct: 773 APTPQPP 779

Length = 991

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 20/65 (30%), Positives = 22/65 (33%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 178
           PP           P  PPP  A P+P   PA      P+  P PP     P     PA A
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 179 PRAPP 183
             A  
Sbjct: 444 ASAGD 448

Length = 576

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 135 PPPGRAEPLP--HEPPASLRPHPPS------GPPPPPPPPPAPRPP-PAPAPAPRAPPPP 185
           PP   A+P     +PP +  P   +       P P   P   P+P  P   P      P 
Sbjct: 94  PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPA 153

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P+P    P P +    P  P   P    V  P 
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186

Length = 333

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPP--PAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
           P  PPA   P  P     P P  P P P   PA  PAP A  P P   PPP  PP+   A
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140

Query: 202 P 202
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 24/73 (32%), Positives = 27/73 (36%)

Query: 139 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 198
           RA+P+  E      P       P P       PPP   P P  P PP     PPPP    
Sbjct: 36  RAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGY 95

Query: 199 GPAPRPPPPMPSG 211
              P+ PPP   G
Sbjct: 96  MADPQEPPPPYPG 108

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 28/90 (31%), Positives = 31/90 (34%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           PP            Q       P   A+     PP    P  P+G P  PPPPPAP P  
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
           APA AP   PP  +        P      R
Sbjct: 769 APAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 27/114 (23%), Positives = 30/114 (26%), Gaps = 7/114 (6%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL-RPHPPSGPPPPPPPPPAPRPPP 173
            L  PP   GS      P  P        P   PA +  P  P   P     P     P 
Sbjct: 171 TLAAPPLGEGSADGSCDPALPLSA-----PRLGPADVFVPATPRPTPRTTASPETTPTPS 225

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAP-RPPPPMPSGSKVPRPPLGQKHSSS 226
                P    P P      P       A   P PP P G + P         +S
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279

Length = 401

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 27/129 (20%), Positives = 32/129 (24%), Gaps = 7/129 (5%)

Query: 114 PPLKPPPGRVGSTLQG---MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           PP  P P                 P    A              PP+       P     
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR----PPLGQKHSSS 226
           P  A  PAPRA  P        P       A R   P  +    P      P     ++ 
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAAR 545

Query: 227 SVGAGAEGD 235
           + GA A  D
Sbjct: 546 AGGAAAALD 554

Length = 830

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 25/67 (37%)

Query: 137 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
           PG  +      P        +G PPPPPP  A    P P  AP  PP  P+P  P     
Sbjct: 48  PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTV 107

Query: 197 RGGPAPR 203
                PR
Sbjct: 108 TVAKDPR 114

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 30/78 (38%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
             P P  PP S   + P+    PPPP   P PPP P P       PP PG  PPP     
Sbjct: 56  PTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNY-- 113

Query: 200 PAPRPPPPMPSGSKVPRP 217
             P PP P       PRP
Sbjct: 114 --PYPPGPGQD-PYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 21/88 (23%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 153 PHPPSGPPPPPPPPPAPRP----PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
           P   +          A          P   P  P P     P  P  PR  PAP  PP  
Sbjct: 2   PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRA 61

Query: 209 PSGSKVPRPPLGQKHSSSSVGAGAEGDA 236
             G + P+P       + +  A A   A
Sbjct: 62  TDGDRDPQPLADALAEAMARAAAARFAA 89

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP----- 202
           PA L P     PPP P   P P P P P P   AP   PKP P P P P+  P P     
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114

Query: 203 -------RPPPPMPSGSKVPRPPLGQKHSSSS 227
                  +P  P P+       P     S+++
Sbjct: 115 EQPKREVKPVEPRPASPFENTAPARPTSSTAT 146

Length = 246

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 51.6 bits (123), Expect = 9e-07
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 135 PPPGRAEPLPHEPP------ASLRPHPPSGPPPPPPPPPAPRPP---PAPAPAPRAPPPP 185
           P P R  P P  P            H P     P    PA +P    PA  P  +    P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
            +P   P P        + PP    G K  R
Sbjct: 234 VQPAQQPTPQ----NPAQQPPQTEQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 1/94 (1%)

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 176
            P                P   +    P        P PP    PP P     +PPP PA
Sbjct: 704 APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763

Query: 177 PAPRAPP-PPPKPGPPPPPPPRGGPAPRPPPPMP 209
           PAP A P   P P PP                  
Sbjct: 764 PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAP-APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
           + RP    G   P     AP   PAPA  AP A  P P   P  P       A       
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 209 PSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
               + P P        +S        A AP
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAP 452

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 24/83 (28%), Positives = 28/83 (33%)

Query: 157 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
           +GP      P A   P A APA  AP P   P  P   P     A          S  P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 217 PPLGQKHSSSSVGAGAEGDANAP 239
                + +S+    GA   A AP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAP 454

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 31/129 (24%), Positives = 36/129 (27%), Gaps = 26/129 (20%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
                  ST       +       P P   P+  RP PP+ P  P   P   R P +PA 
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

Query: 178 APRAPP-----------------PPPKPGPPPPPPP------RGGPAPRPPPPMPSGS-- 212
           +   P                      P   P P P       G    R P   PSG   
Sbjct: 381 SAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPW 440

Query: 213 -KVPRPPLG 220
              P PP G
Sbjct: 441 PGSPPPPPG 449

Length = 1352

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 103 AKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPP 161
              +N  G+   P  P P  VG       P +   G    P  H   A+LR      P  
Sbjct: 645 RPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHH--AALRAPQAPRPGG 702

Query: 162 PPPP----PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
           PP      PP P  P A  PAP        P  PP P P G        
Sbjct: 703 PPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
              PPP     LP  PP S    P +   P    P     P  P P+P  P  PP   P 
Sbjct: 186 IQPPPPS---SLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA 242

Query: 192 PPPPPRGGPAPRPPPPMPS 210
           PP PP       PP P P 
Sbjct: 243 PPIPPVIQYVAPPPVPPPQ 261

Length = 582

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-PPMPSGSKVPRP 217
           P PPPP P     PP P   P A PP  +P P  P      P P P  PP     K   P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASS---PPPTPASPPPAKAPKSSHP 198

Query: 218 PL 219
           PL
Sbjct: 199 PL 200

Length = 274

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 1e-06
 Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
              +  P PP   PPPP P P    P A AP P  PPPPP         P   PA   PP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 207 PMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 237
           P       P P   +  S   +   A+  A+
Sbjct: 578 PPIPEEPTPSPT--KDSSPEEIDKAAKNLAD 606

Length = 620

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 27/64 (42%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
           PL PP       P EP        P+   P PPP   P  PPAPA A  AP   P P  P
Sbjct: 81  PLTPPA------PPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134

Query: 192 PPPP 195
           P PP
Sbjct: 135 PQPP 138

Length = 141

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           PPPG    L   P         + PPP  PPPP    PP   P P  P       P  PP
Sbjct: 48  PPPGAYVHLEPLPAY----GQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPP 103

Query: 195 PPRGGPAP 202
           PP  GP  
Sbjct: 104 PPYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 21/95 (22%), Gaps = 11/95 (11%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
           P P      LQ  PP     G              P     P  P           APA 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGG-----------PPGGGGAPGAPAAAAAPGAAAAAPAA 426

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
              A      P           PA  P P +   S
Sbjct: 427 GGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 124 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 183
              L     L+ P    +P P EPP   +P PP+ P  PP P P P+P   P P  +   
Sbjct: 40  AVFLLAAKVLEAPTEEPQPEP-EPPEE-QPKPPTEPETPPEPTP-PKPKEKPKPEKKPKK 96

Query: 184 PPPKPGPPPPPPPRGGPAPRP-PPPMPSGSKVPRPPLGQKHSSSSVGA 230
           P PKP P P P P+  P P+P  PP  + +K P  P       S+  A
Sbjct: 97  PKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASA 144

Length = 244

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 107 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 166
               + +  + PP        Q +  L+              ++      +   P P   
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEV-------RSLRSAPTAAATAAGAPLPDFD 396

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           P PR PPAP PA  A  PP      P   P G  
Sbjct: 397 PRPRGPPAPEPARSAEAPPL---VAPAAAPAGLA 427

Length = 504

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA- 168
             P    PGR           +PP   PGRA P    P  +  P    G P P PPP A 
Sbjct: 724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAP 783

Query: 169 ------PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
                 PR  P P P P+A P   +  P   P  +G         +  G K  RP L
Sbjct: 784 PAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSL 840

Length = 991

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 12/129 (9%)

Query: 101 GTAKSFNENGQVLPPLKPP---PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 157
           GTA          P  +P    P +   +L+ +           P   +PP       P 
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQ-QAPQLPQPPQ---QVLPQ 182

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP--PPPPRGGPAPRPPPPMPSGSKVP 215
           G PP     P   PP  P   P+ P   P+   P    P P   PA  P PP        
Sbjct: 183 GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ---Q 239

Query: 216 RPPLGQKHS 224
            PPL Q   
Sbjct: 240 PPPLQQPQF 248

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP-APRPPPAPAPAPRAPPPPPKPG 189
           PP +P P R  P P  P AS    PPS P P   PPP     P AP   PR  P      
Sbjct: 11  PPRRPSPPRPTP-PRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTFS 69

Query: 190 PPPPPPPRGG----PAPRPPP 206
              PP P  G    PA  PPP
Sbjct: 70  SSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 41/98 (41%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
              +PP  P PG  G     +PP  P PG A   P  PP       P  PPP P  P  P
Sbjct: 69  ATAIPPPPPLPGAAG-----IPPPPPLPGGAGIPPPPPPLPGGAAVPP-PPPLPGGPGVP 122

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            PPP    AP  PPPPP  G PPPPP   G    P  P
Sbjct: 123 PPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 20/64 (31%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
           P PPS     P P     PPPA AP      P       P P P    A  PP      +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 213 KVPR 216
               
Sbjct: 442 AAAS 445

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
                 E   +  P     P P P PPPAP  P AP     A  P P P    PP P   
Sbjct: 361 PSAFISEIANASAP-ANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 200 PAPRPPPPMPSGSKVPRPPLG 220
               P P  P+ +    P L 
Sbjct: 420 EPTEPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            A      P  P   P PPP  +       A       P+   P    PR    P+P   
Sbjct: 13  EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
           G      P PAP  P A    P              P      A +P    P   + P+P
Sbjct: 10  GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69

Length = 475

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 25/122 (20%), Positives = 34/122 (27%)

Query: 124 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 183
           G    G  P +       P      A      P+          A  P  A A A     
Sbjct: 365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE 424

Query: 184 PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL 243
            PP    PP    RG  A     P+P+ +        +     +      G A+AP +  
Sbjct: 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA 484

Query: 244 KP 245
            P
Sbjct: 485 PP 486

Length = 830

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 26/93 (27%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
              + PP    P P E P   +      P P P P P P+  P P P         K   
Sbjct: 71  TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130

Query: 191 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 223
            P  P R   A          S      L +  
Sbjct: 131 APNQPARPPSAASASGAATGPSASYLSGLRRAI 163

Length = 244

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 12/45 (26%), Positives = 12/45 (26%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
               PPP  P    P PP  P      P        P    P  G
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 39/130 (30%), Gaps = 17/130 (13%)

Query: 119 PPGRVGSTLQ---GMPPLKPPPGRAEPLPHEPPASLRPHPP-SGPPPPPPPPPAPRPPPA 174
            P R+  T+    G P   PP  R    P  P    RP+    GP     PP  PR    
Sbjct: 80  RPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL 139

Query: 175 PAPAPRAPP--PPPKPGPPPPPP-------PRGGPAPRPPPPMPS----GSKVPRPPLGQ 221
           P   P  P     P+PG  P           R G  PR P   P+      +  R P   
Sbjct: 140 PTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDA 199

Query: 222 KHSSSSVGAG 231
                     
Sbjct: 200 GRPEYDQRRR 209

Length = 617

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 121 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 180
            R    +   P   P   +  P   EP     P P   P P  P  P  RP   P+PA  
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAP---EPDL---PQPDRHPGPAKPEAPGARPAELPSPASA 427

Query: 181 APPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
             P    P     P P   P    P  + SG 
Sbjct: 428 PTPEQQPPVARSAPLPP-SPQASAPRNVASGK 458

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP---- 191
           P     P    P AS +          PP  PA  PPPA AP      P P+        
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 192 PPPPPRGGPAPRPPPPMPSGSKVPRP 217
                R   A +     P+ +   RP
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARP 451

Length = 647

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 17/55 (30%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           P   PP P   P  P P    APA +A  P         P        R P P  
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71

Length = 475

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 31/80 (38%), Positives = 34/80 (42%)

Query: 125 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 184
           S  +   P   PP      P   P S    PP G  P PPP P P   PA  P P    P
Sbjct: 49  SYEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVP 108

Query: 185 PPKPGPPPPPPPRGGPAPRP 204
           PP+  P PP P +   APRP
Sbjct: 109 PPQNYPYPPGPGQDPYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 31/152 (20%), Positives = 44/152 (28%), Gaps = 4/152 (2%)

Query: 87  IGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE 146
             +  G+ S G   G     + + + +  +K    R+G   +  PP  PP  R   +   
Sbjct: 494 TPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVAL 553

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
             AS  P     P P P            A A          G                 
Sbjct: 554 SLAS--PSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSK 611

Query: 207 PMPSGSKVPRPP--LGQKHSSSSVGAGAEGDA 236
           P+       +P    G+  SSS VGA     A
Sbjct: 612 PLTGPGSDLKPATLNGKTPSSSLVGAARNAGA 643

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 49.8 bits (120), Expect = 3e-06
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG----GPAPR 203
             P+    P    PA     APAPAP A   P    P     P       PA R
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVR 250

Length = 547

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 20/84 (23%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP-RGGP 200
           P P E    L+  PPS       PP     P APA A         P    P       P
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 201 APRPPPPMPSGSKVPRPPLGQKHS 224
                   P        P  + +S
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 20/94 (21%), Positives = 22/94 (23%), Gaps = 4/94 (4%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           PP    P  V       P  +P P   E           L     +   P    P AP  
Sbjct: 64  PPPAAAPAAVSRP--AAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAE 121

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
             A   A R         P P  P     A    
Sbjct: 122 RAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 32/124 (25%), Positives = 37/124 (29%), Gaps = 27/124 (21%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPA------------PRPPPAPAPAPRAPPPPPKP---GP 190
           E     +  P +      P P              PRPPP    +  A  P P P   GP
Sbjct: 5   EEGKPSKSSPKTSVQEDTPTPTVYPDWSAMQAYYGPRPPPPYFNSSVASSPQPHPYMWGP 64

Query: 191 PPP-PPPRGGPAPRPP----------PPMPSGSKVPRP-PLGQKHSSSSVGAGAEGDANA 238
             P  PP G P P             P MP GS    P  +       S     E DA +
Sbjct: 65  QQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSMETDAKS 124

Query: 239 PKTK 242
              K
Sbjct: 125 SDNK 128

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 49.7 bits (118), Expect = 5e-06
 Identities = 35/135 (25%), Positives = 38/135 (28%), Gaps = 13/135 (9%)

Query: 116 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 175
           L PPP         + PL   P    P  H PP  L P        P  PP   +    P
Sbjct: 381 LPPPPA--------LKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLP 432

Query: 176 APAPRAPPPPPKPGPPPPPPPR-----GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
             A   P      GPP  P  +     GG     PPP    S    PP     S     A
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSA 492

Query: 231 GAEGDANAPKTKLKP 245
                  A      P
Sbjct: 493 LPSSGGCAGPGPPLP 507

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 139 RAEPLPHEPPASLRPHP-PSGPPPPPPPPPAPRPPPAPAPAPRAPPP----PPKPGPPPP 193
           R    P          P P     PP     PR P    P  + PP     P +P P P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 194 PPPRGGP---APRPPPPMPSGSKVPRP 217
             P   P    P   P  P  +  P+P
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQP 156

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 5e-06
 Identities = 19/65 (29%), Positives = 21/65 (32%)

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
              +      PPPP   PPP     P   P    P P PPPPP          P    + 
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 214 VPRPP 218
              PP
Sbjct: 574 SSPPP 578

Length = 620

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 156 PSGPPPPPPPPPAPR---PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            +    PPPP  A     PPP P     A  PPP   P  PP      AP     
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTV 107

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 5e-06
 Identities = 19/100 (19%), Positives = 24/100 (24%), Gaps = 11/100 (11%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP---------- 179
           +PP    P  +      P A++ P      PPPP   P   P                  
Sbjct: 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429

Query: 180 -RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
            RA          P    R  P       + S    P   
Sbjct: 430 QRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSAL 469

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 6e-06
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
               +    PPPP   PP   PP    P P+     P P PPPPPP     +   P  +P
Sbjct: 515 GSASNTAKTPPPPQKSPP---PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 210 SGSKVPRPP 218
           + S  P P 
Sbjct: 572 ADSSPPPPI 580

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 29/165 (17%), Positives = 36/165 (21%), Gaps = 44/165 (26%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP--------PP 165
                 P     +        PP    EP P     S            P        P 
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523

Query: 166 PPAPRPPPAPAPAP-------------------------------RAPPPPPKPGPPPPP 194
             AP  P A  P P                                      KP   P  
Sbjct: 524 AAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA 583

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
            P+   APR    +P+    PR       +  +  A AE  A + 
Sbjct: 584 APKP-AAPRVAVQVPT----PRARAATGDAPPNGAARAEQAAESR 623

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 32/142 (22%), Positives = 37/142 (26%), Gaps = 21/142 (14%)

Query: 115 PLKPPPGRVGSTLQGMPP-------LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP- 166
           P  P PGR      G P        L          P  P    RP P + P        
Sbjct: 108 PELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGW 167

Query: 167 ---PAPRPPPAPAPAPRAPPPPPKPGPPPP-------PPPRG---GPAPRPPPPMPSGSK 213
                  PP AP  +P +  P  +    P           R     P P    P    + 
Sbjct: 168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTD 227

Query: 214 VPRPPLGQKHSSSSVGAGAEGD 235
            P PP G  H         E D
Sbjct: 228 RPEPPPGAGHVHRGGPGPPERD 249

Length = 617

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 35/100 (35%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA---PAPRAPPPP 185
           G  PL P P  A P P  P       P +  P    P PAP  PPA A   P P   P P
Sbjct: 78  GQSPLAPSPACAAPAPACPA----CAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAP 133

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
            +P P  PP  R  P P PP P P  +   +P        
Sbjct: 134 ARPAPACPPSTRQCP-PAPPLPTPKPAPAAKPIFLHNQLP 172

Length = 280

>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 143 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG--GP 200
             ++   +  P+  +G       P  PRP   P   P A  P P  G   P   RG    
Sbjct: 62  HHYDEARADYPYY-TGSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRR 120

Query: 201 APRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
           A  P P  P   K    P G+K  S+   + A  DA AP
Sbjct: 121 AESPSPRDPPNPKGASAPRGRK--SACADSAALLDAPAP 157

Length = 290

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.1 bits (117), Expect = 7e-06
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
           PA+L  + P   P P    P P+  PAP P P    P P  G P     R
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRP-VLAPTPASGEPNAAAVR 436

Length = 584

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 35/76 (46%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPGP---PPPPPPRGGPAP 202
           PP    P     PPPPP P     PPP P P     PPPPP PG    PPPPP  G    
Sbjct: 1   PPPPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGI 60

Query: 203 RPPPPMPSGSKVPRPP 218
            PPPP+P  + +P PP
Sbjct: 61  PPPPPLPGATAIPPPP 76

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 8e-06
 Identities = 22/69 (31%), Positives = 25/69 (36%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           S      + PPP   PPP    PP P P   APPP P P PP           + P    
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 210 SGSKVPRPP 218
               +P  P
Sbjct: 576 PPPPIPEEP 584

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 48.8 bits (116), Expect = 8e-06
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 166 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
            PAP  PP+PA AP  PPP     P          APR   P     +  R P
Sbjct: 16  QPAP-APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP 67

Length = 475

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 22/67 (32%), Positives = 24/67 (35%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
           R  P S      PPP A           +   PPP   PPP  P   G  P PPPP    
Sbjct: 36  RAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGY 95

Query: 212 SKVPRPP 218
              P+ P
Sbjct: 96  MADPQEP 102

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (117), Expect = 8e-06
 Identities = 30/160 (18%), Positives = 41/160 (25%), Gaps = 14/160 (8%)

Query: 97  GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHP 155
           GA GG   +        P  +       S +  +  +    G A  P      A+ R   
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 156 PSGPPPPPP-------PPPAPRPPPAPAPAP---RAPPPPPKPGPPPPPPPRGGPAPRPP 205
           P   P PP              P PA A A     +        PP        PA   P
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 206 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
           P        P P      +++           A   +  P
Sbjct: 486 PDAA---FEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522

Length = 830

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 162 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           P       +P   P P P    P  +   P P    G  A   P PMP
Sbjct: 24  PAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADA--MPSPMP 69

Length = 130

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P  PPP    +     P   PPP      P   P      PP  P  P  PPP P  P A
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 175 PAPAPRAPPPPPKPG 189
           P      PPP P+PG
Sbjct: 101 P------PPPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP-PPAPRPPPAP-APAPRAPPPPPKP 188
               P        P  P     P   +    PPP  P AP P P P  P P  PP P  P
Sbjct: 33  ESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAP 92

Query: 189 GPPPPPPPRGGPAPR 203
             P   PP   P P+
Sbjct: 93  PAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (117), Expect = 9e-06
 Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 152 RPHPPSGPP--PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
            P  P   P  PP    PA       AP     PP     PPPP          P P   
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 210 SGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 240
           S     R  L +   ++         A+  +
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRAR 450

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 9/79 (11%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR---------AP 182
           PL+       P P     + R    +     PPPPP    P   A  P          AP
Sbjct: 247 PLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP 306

Query: 183 PPPPKPGPPPPPPPRGGPA 201
              P P  PPPP P G   
Sbjct: 307 LALPAPPDPPPPAPAGDAE 325

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 49/126 (38%), Positives = 54/126 (42%), Gaps = 18/126 (14%)

Query: 110 GQVLPPLKPPPGRVG-------STLQGMPPLKPPPGRA--EPLPHEPPASLRPHPP---- 156
           G  +PP  P PG            + G+PP  P PG     P P  P A+  P PP    
Sbjct: 33  GTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPG 92

Query: 157 -SGPPPPPPPPPA----PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
            +G PPPPPP P     P PPP P      PPPPP PG P  PPP  G    PPPP   G
Sbjct: 93  GAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFG 152

Query: 212 SKVPRP 217
                 
Sbjct: 153 VPAAPV 158

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/97 (25%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLK----PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 166
              P  +PP  +V       P             +P P +P    +P  P   P P P  
Sbjct: 101 PRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPL--QQPVSPQVAPAPQPVH 158

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
            AP  P   A  P  P   P+P P   P P      R
Sbjct: 159 SAP-QPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 31/115 (26%), Gaps = 17/115 (14%)

Query: 148 PASLRPHPPSGPPPPPP--------------PPPAPRPPPAPAPAPRAPPPPPKPGPPP- 192
           P  L   P  G    PP              P  APR  PA    P  P P P+    P 
Sbjct: 160 PLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPE 219

Query: 193 --PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
             P P      P    P PS +           +  +      G   AP     P
Sbjct: 220 TTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATP 274

Length = 401

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 126 TLQGM---PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 182
           TL G+     +      + P    P  +  P P    P  P    A   P  P       
Sbjct: 355 TLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKA--S 412

Query: 183 PPPPKPGPPPPPPPRGGPAPRPPPP 207
           PP P P  P  P P         PP
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 112 VLPPLKP-PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           VLP  +P  P +    + G   + P       LP       +P P   P P  P  P P 
Sbjct: 60  VLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPP 119

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPP 194
             P P   P+ P PP  P  P PP
Sbjct: 120 VHPIPPLPPQPPLPPMFPMQPLPP 143

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 20/57 (35%), Positives = 21/57 (36%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           P PP    PP    PAP  P  P  +  A PP P    P P        P  PP  P
Sbjct: 85  PAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141

Length = 141

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
           PP  P P          PA   P P S P  PP P  A  P PA AP P  PP PP+
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAV-PAPAAAPPPSDPPQPPR 139

Length = 141

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 33/128 (25%), Positives = 37/128 (28%), Gaps = 26/128 (20%)

Query: 115 PLKPPPGRVGSTLQ--GMPPLKPPPGRAEPLPH-----EPPASLRPH------PPSGPPP 161
                    G   Q  G PP  P    A   P      EP  + RP           P P
Sbjct: 157 AWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRP 216

Query: 162 PPPPP-----PAPRPPPAPAPAPRAPPPPPKP--------GPPPPPPPRGGPAPRPPPPM 208
               P       P PPP      R  P PP+          P  P P    PAP P P  
Sbjct: 217 DWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGE 276

Query: 209 PSGSKVPR 216
           P+    P+
Sbjct: 277 PTARLNPK 284

Length = 617

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 48.3 bits (116), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 14/58 (24%)

Query: 145 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
                 +     +      P   AP    A APAP            P      G AP
Sbjct: 186 GSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243

Length = 547

>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPPP--PPPPPAPRPPPA 174
           P   R+       P ++  P  A  PL    P+   PHPPS  P           R PP+
Sbjct: 362 PTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPS 421

Query: 175 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
             P PR   P P P  P   P    P   PP P P  
Sbjct: 422 VLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458

Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 20/39 (51%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P  P PP P PPAP PPP PAP    P P  KP     P
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAP 45

Length = 94

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 149 ASLRPHPPSGPPPPPPPPPAPRPPPAPA-PAPRAPPPPPKPGP-PPPPPPRGGPA 201
                 P            +    PA A  AP  PP PP   P PP    RG  A
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP--PPPPRGGPAPRPPPPMPSGSKVP 215
           G  P   P PA   P A +PA   P P   P       P P+      P     +   V 
Sbjct: 193 GSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVR 252

Query: 216 R 216
           R
Sbjct: 253 R 253

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 21/63 (33%)

Query: 177 PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 236
           PAP  PPP      P P  P   P P  PP          PP      ++      + +A
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 237 NAP 239
             P
Sbjct: 101 PPP 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 28/117 (23%), Positives = 31/117 (26%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
           PP  +               G   P P           PS      P  P        AP
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 234
               P  PP  G   PPPP    A  P P   S    P  P   +   +    GAE 
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAEN 752

Length = 753

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
                PPPP        PP P PA      PP P  P  PP    P   P     + +K 
Sbjct: 54  TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEP-EAPAENTVTVAKD 112

Query: 215 PR 216
           PR
Sbjct: 113 PR 114

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 21/128 (16%), Positives = 27/128 (21%), Gaps = 3/128 (2%)

Query: 93  TASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLR 152
             S         +      V PP  P      ++     P  P P     L        R
Sbjct: 372 PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQR 431

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP--PPMPS 210
               +      P   A R  P  +   R     P P      P +          P    
Sbjct: 432 AQGATKAKKSEP-AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVK 490

Query: 211 GSKVPRPP 218
              V  P 
Sbjct: 491 KEPVATPK 498

Length = 647

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 152 RPHPPSGPPPPPPPPP----APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           RP  P   P  PP P     AP  P  P   P+A  P  +P PP     RGGP P PP  
Sbjct: 124 RPALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGP-PFPPNQ 182

Query: 208 MPSGSKVPRPPLGQ 221
              G        GQ
Sbjct: 183 YGGGRGNYDEFRGQ 196

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPP--PPPPPPAPRPPPAPAPAPRAPPP-- 184
           G  P  PP     P+   P  ++R   PSGP     PP P  P P  +P P P + P   
Sbjct: 129 GFKPPTPPSTPCSPV--NPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSS 186

Query: 185 ----------PPKPGPPPPPPPRGGPAPRPPPPMPSGSK--VPRPPLGQK 222
                       +P  P PPPP  G     PP     S+  VP PP G K
Sbjct: 187 YPSEHRFQRQLSEPCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPPQGFK 236

The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 127 LQGMPPLKPPPGRAEPLPHE--PPASLRPH---PPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           +QG    +P P           P A LR       + PP P PPPP     P P    RA
Sbjct: 2   IQGARLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRA 61

Query: 182 PPPPPK------PGPPPPPPPRGGPA 201
             PPP+      P  PP  P      
Sbjct: 62  SDPPPEAPTDADPAQPPDDPDASAHT 87

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 18/59 (30%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
            P A+    P   P PP  P       PA A   ++P         P  P    P+   
Sbjct: 86  PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
           P L P  G A P+P    A  +            P  AP+     A AP A P       
Sbjct: 229 PLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAA 288

Query: 191 PPPPPPRGGPAPRPPPPMPSGSKVPRP 217
            P P              P+    PRP
Sbjct: 289 EPAPKEAA--KAAAAAAKPALEDKPRP 313

Length = 400

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 25/113 (22%), Positives = 30/113 (26%), Gaps = 5/113 (4%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP-PAPAPAPRAPPPPPKPGP 190
            +K   G   PL         P PPS    P             PA AP+A     K   
Sbjct: 219 TVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPE 278

Query: 191 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL 243
             P        P P     + +   +P L  K        G      A   KL
Sbjct: 279 AQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRP----LGIARPGGADDLKL 327

Length = 400

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 19/76 (25%), Gaps = 2/76 (2%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
                  S     P  K P   A   P     +  P P +       P   P    A AP
Sbjct: 49  AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

Query: 178 APRAPPPPPKP--GPP 191
           A  A      P  G  
Sbjct: 109 AAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 29/103 (28%), Gaps = 5/103 (4%)

Query: 109 NGQVLPPLKPPPGRVGSTLQGMPPLK----PPPGRAEPLPHEPPASLRPHPPSGPPPPPP 164
           N       +    R     Q  PP        P +  P    PP    P P    P P  
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQH-APRPAQPAPQPVQ 130

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            P     P  P   P +P   P P P    P     A +P  P
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEP 173

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 2/100 (2%)

Query: 108 ENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP 167
            + Q   P++ PP           P +P P   +   ++P        P  P   P P P
Sbjct: 97  ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
               P     A +   P   P P P   P   P    P  
Sbjct: 157 VHSAPQPAQQAFQPAEPVAAPQPEPVAEP--APVMDKPKR 194

Length = 333

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
           P  PPP     +   PP ++ P  P    P P  P      P P PA   P   PK   P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPA---SSPPPTPASPPPAKAPKSSHP 198

Query: 192 PPPPPRGG-----PAPRPPPPMPSGSKV 214
           P   P  G     PAP  PP +  G KV
Sbjct: 199 PLKSPMAGTFYRSPAPGEPPFVKVGDKV 226

Length = 274

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 33/140 (23%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           Q      PP  +  S L   PP +      +P P + P    P  P  PP   P    P+
Sbjct: 86  QQQQSQAPPSHQYPSQL---PPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP------PPMPSGS---KVPRPPLGQ 221
           PPP      +   PP +P     PPP+   AP+         P    S     P P    
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMA 202

Query: 222 KHSSSSVGAGAEGDANAPKT 241
                S    ++     P+ 
Sbjct: 203 MQPPYSGAPPSQQFYGPPQP 222

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 12/84 (14%)

Query: 147 PPASLRPHPPSGPPPPPPP----PPAPRPPPAP--------APAPRAPPPPPKPGPPPPP 194
           PPA+  P     PP   P     P AP   PAP          A R         P  P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPP 218
                          +  ++ R  
Sbjct: 113 AQAPAAPAERAAAENAARRLARAA 136

Length = 484

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 138 GRAEPLPHE-PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
           G  + + +  PP+++    P  PP P  PP  P P P    AP  P    +     P   
Sbjct: 48  GEKKRINNTQPPSNVERGTPPLPPLPDDPPL-PPPLPVDLGAPVLPDQQVEEAKDQPR-- 104

Query: 197 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 246
                      + + S              +  A A   A AP    +P 
Sbjct: 105 -----RLRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQPS 149

Length = 360

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 140 AEPLPHEPPA-SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
             P    P A +      + P  P    P P PP A  P P A   PP+P P   PPP
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179

Length = 418

>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2)

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 144 PHEPPASLRPHPPS-GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP--PPPRGGP 200
           P  PPA    + PS   PP    P A  P P P+     P        P    PP    P
Sbjct: 2   PDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMY--LPMAQVMAVGPQSSHPPMAYYP 59

Query: 201 APRPPPPMPSGSKVP 215
              PPP  P GS V 
Sbjct: 60  IGAPPPVYPPGSTVL 74

DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats. Length = 136

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 185
                AS + + P  P P P    AP P  A   AP A P P
Sbjct: 48  LGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.6 bits (110), Expect = 4e-05
 Identities = 33/160 (20%), Positives = 41/160 (25%), Gaps = 35/160 (21%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH---------------- 154
           Q   P    P +    L+   P+   P R +P+         PH                
Sbjct: 612 QSHIPETSAPRQWPMPLR---PIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQ 668

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP--------PPRGGPAPRPPP 206
               P  P P       P   AP     PPP  P P  PP         P        PP
Sbjct: 669 IGHIPYQPSPTGANTMLPIQWAPG-TMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPP 727

Query: 207 PM-------PSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
                    P+ +     P       +   A A G A  P
Sbjct: 728 AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767

Length = 991

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 25/121 (20%), Positives = 30/121 (24%), Gaps = 10/121 (8%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
              P   R  S+             +        A   P P     P P  PP P  P +
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV-SPGPSPSRSPSPSRPPPPADPSS 364

Query: 175 P--APAPRAPPPPPKPGPPPPPPPRGGPAPRP-------PPPMPSGSKVPRPPLGQKHSS 225
           P   P P   P  P      P   R   A              P+G   P P      S 
Sbjct: 365 PRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASG 424

Query: 226 S 226
           +
Sbjct: 425 A 425

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.6 bits (110), Expect = 4e-05
 Identities = 41/155 (26%), Positives = 49/155 (31%), Gaps = 22/155 (14%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP--HPPSGPPPP-------- 162
           +P L     +    LQG  P    P    P P   P S  P  HPPS  PPP        
Sbjct: 354 IPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQ 413

Query: 163 PPPPPAPRPP------PAPAPAPRAPPPPPKPGPPPPPPPR------GGPAPRPPPPMPS 210
           P      +PP        P  A   P      GPP  P  +      G PA  PPP +P+
Sbjct: 414 PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPT 473

Query: 211 GSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
            +    P              + G    P   L P
Sbjct: 474 STPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPP 508

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 18/102 (17%), Positives = 23/102 (22%), Gaps = 1/102 (0%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
            P  P P      L     L+   G  +    EP A+ R   P            P P  
Sbjct: 410 APAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA-RPVNSALERLASVRPAPSA 468

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
                 +      K   P          P+         K P
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510

Length = 647

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           PL P P                P  A   P   PA      P+ PPP   P PA   P  
Sbjct: 81  PLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPAC 140

Query: 175 PAPAPRAPPPPPKPGPPPPPPPRGGPAPR--PPPPMPSGS 212
           P    + PP PP P P P P  +        PPP  P+ S
Sbjct: 141 PPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAS 180

Length = 280

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 15/54 (27%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
           P   P   P P P P  +PA      P        P      A  P  P  S  
Sbjct: 87  PAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 15/54 (27%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
             A   P   +      P   A       APAP AP  P       P  P G  
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P A+  P P   PPPPPPPP  P P   P    +  P   +     P 
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 7/34 (20%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
           P G PPPPPPPP   P       P  PPPPP PG
Sbjct: 5   PPGNPPPPPPPPGFEP-------PSQPPPPPPPG 31

Length = 2365

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.6 bits (110), Expect = 5e-05
 Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE-PPASLRPHPPSGPPPP------- 162
           Q+L P  PP  +V       P   PP   A+ +P +  P + +P P    P P       
Sbjct: 171 QLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAP 230

Query: 163 ---PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
              P   P+P PP  P  A +  P PP P    P     GP P  P  +  G    + P
Sbjct: 231 SLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHP 289

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 128 QGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 186
           QG P ++ PPG A  P    P  S +  PP G P    P P P+ P   +        P 
Sbjct: 176 QGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQ 235

Query: 187 K-PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
           + P P PP  P+      P PP PS S+ P+     
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPS-SRHPQSSHHG 270

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 124 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 183
           G+  +G+  + PP      L        +        P      A  P P   P PR PP
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP 403

Query: 184 PPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
            P        PP         P   P+G
Sbjct: 404 APEPARSAEAPP------LVAPAAAPAG 425

Length = 504

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 17/59 (28%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
                 P      P   +P     P P   PP  + G   PP P+  P   P    P  
Sbjct: 6   NTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQ 64

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
             + P   +P+    PPPP  PP   +    P      P   P+   PP    
Sbjct: 15  QQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQFSS 67

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 164 PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 223
           P   A    P   P+P  P       P   P P    A +P  P  SG ++   PL +K 
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEP---KASKPSAPPSSGDRIFASPLARKL 258

Query: 224 S-------SSSVGAGAEG 234
           +       SS  G G +G
Sbjct: 259 AEDNNVPLSSIKGTGPDG 276

Length = 539

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 26/134 (19%), Positives = 35/134 (26%), Gaps = 8/134 (5%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP----HEPPASLRPHPPSGPPPPPP--PPP 167
           P  +       ++ +G      P       P        A  RP   +    P    P  
Sbjct: 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 168 APRP-PPAPAPAPRAPPPPPKPGP-PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
           AP P    P P    PP    P P  P   P G  A   P P  +        L    ++
Sbjct: 488 APAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

Query: 226 SSVGAGAEGDANAP 239
           +     A       
Sbjct: 548 APAPRAAAATEPVV 561

Length = 700

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 17/47 (36%), Positives = 18/47 (38%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 178
              P P  A   P   PA+  PH    PP P P P     P A AP 
Sbjct: 213 EEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 20/59 (33%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 192
            PP                P  P    P P PP A +P P  A  P  P P  KP P P
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 226
           PP PAP     PPPP   PP  PP    PAP  P   P       PP  +   SS
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPA-AQPAPSAPASSPP-PTPASPPPAKAPKSS 196

Length = 274

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 108 ENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP 167
           E  ++L PL PP           PP    P  A P P        P  P+   P P   P
Sbjct: 74  EARKILAPLTPPA----PPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129

Query: 168 APRPPPAPAPAPRAP 182
            P  PP P   PRAP
Sbjct: 130 PPSDPPQP---PRAP 141

Length = 141

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 16/77 (20%), Positives = 18/77 (23%), Gaps = 14/77 (18%)

Query: 159 PPPPPPPPPAP--------------RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
           PP PP   PAP              R  P P   P    P  +P    P         + 
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 205 PPPMPSGSKVPRPPLGQ 221
           P           P    
Sbjct: 233 PVQPAQQPTPQNPAQQP 249

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 27/117 (23%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
             P   PP      P EP     P PP   P   P P      P P P P+ P P PK  
Sbjct: 56  PQPEPEPPEEQPKPPTEPETPPEPTPP--KPKEKPKPEKKPKKPKPKPKPK-PKPKPKVK 112

Query: 190 PPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 246
           P P P           P  P+    P        +++   A           +   +
Sbjct: 113 PQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRY 169

Length = 244

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 17/67 (25%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-PPPMPSGSK 213
           P   P     P P       P P         +P P         P P P P P P    
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEE---GEEEPEPEETGEEEPEPEPEPEPEPEPEPEP 116

Query: 214 VPRPPLG 220
            P P  G
Sbjct: 117 EPEPEPG 123

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 45.8 bits (108), Expect = 7e-05
 Identities = 26/109 (23%), Positives = 29/109 (26%), Gaps = 23/109 (21%)

Query: 124 GSTLQGMPPLKPPPGRAEPLPHEP--------PASLRPHPPSGPPPPPPPPPAPRPPPAP 175
             T +    L+         P  P        P SL      G    P PPP     P P
Sbjct: 396 KLTERAREALEKASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGP 455

Query: 176 ------------APAPRAPPPPPKPG---PPPPPPPRGGPAPRPPPPMP 209
                       A  P  P    +PG   P      R   AP P P  P
Sbjct: 456 LHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGP 504

Length = 935

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 41/89 (46%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPG---- 189
           PPP         PP    P     PPPPP P     PPP P P   A PPPPP PG    
Sbjct: 1   PPPPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGI 60

Query: 190 PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           PPPPP P G  A  PPPP+P  + +P PP
Sbjct: 61  PPPPPLP-GATAIPPPPPLPGAAGIPPPP 88

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 19/75 (25%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P +P P  V        P +P      P     P  +   P        P  P   P P 
Sbjct: 121 PAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE 180

Query: 175 PA--PAPRAPPPPPK 187
           P   PAP    P  K
Sbjct: 181 PVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 45.6 bits (109), Expect = 8e-05
 Identities = 14/54 (25%), Positives = 17/54 (31%)

Query: 157 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           +   P     PA   P A A A  AP P     P    P       + P   P+
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 45.6 bits (108), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 14/39 (35%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
             +      PP PAP P    APAP A         P P
Sbjct: 51  VAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 45.3 bits (108), Expect = 9e-05
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
                P   A     APA A  A      P P  P  P         P +P+G++
Sbjct: 86  DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA--AEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 30/113 (26%), Positives = 35/113 (30%), Gaps = 18/113 (15%)

Query: 132 PLKPPPGRAEPLPH-EPPASLRPHPPSGPPPPPPPPPAPRP--PPAPAPAPRAP------ 182
            +  P    +P P  +    L P  P  P       P P P   P  + A   P      
Sbjct: 121 TVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPV 180

Query: 183 ----PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAG 231
               PP P+P PP  P P      R      S  K  R    Q    S VG G
Sbjct: 181 TLELPPAPQPPPPVVPQPSTMVVHR-----RSRIKRTRSSGWQATLDSIVGLG 228

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 40/136 (29%), Positives = 44/136 (32%), Gaps = 19/136 (13%)

Query: 117  KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR------ 170
            +P   R        P    P G   P P  PPA  R  P   P  P   P  PR      
Sbjct: 2482 RPAEARFPFAAGAAPD---PGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIR 2538

Query: 171  ------PPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 223
                     A  P P  PP  P   P    PPPR  PAPRP  P    S+  RP    + 
Sbjct: 2539 GLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPR--PAPRPSEP-AVTSRARRPDAPPQS 2595

Query: 224  SSSSVGAGAEGDANAP 239
            +         GD   P
Sbjct: 2596 ARPRAPVDDRGDPRGP 2611

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 33/136 (24%), Positives = 37/136 (27%), Gaps = 39/136 (28%)

Query: 124  GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP------------------ 165
            G    G P  + P     P             P  P  PP P                  
Sbjct: 2471 GELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH 2530

Query: 166  --------------------PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP- 204
                                PP P PP AP  AP    PPP+P P P  P     A RP 
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590

Query: 205  PPPMPSGSKVPRPPLG 220
             PP  +  + P    G
Sbjct: 2591 APPQSARPRAPVDDRG 2606

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 168 APRPPPAPA-------------PAPRAPPPPPKPGPPPPPPPRGGPAPRP--PPPMPSGS 212
            P P P PA             PAP   P        PP  P    A  P  PP   +  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 213 KVPRPPLGQKHSSSSVGAGAEGDANAP 239
               P    K + +++    +     P
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPP 447

Length = 585

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 32/131 (24%), Positives = 35/131 (26%), Gaps = 13/131 (9%)

Query: 121 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP-SGPPPP-------PPPPPAPRPP 172
           GR       +    P    A P P          P   GP P         P   A   P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-----PPMPSGSKVPRPPLGQKHSSSS 227
             P     A   P  P P  PP   GG  P P       P P GS +   P         
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPP 742

Query: 228 VGAGAEGDANA 238
               A+G  N 
Sbjct: 743 GAEQADGAENQ 753

Length = 753

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 185
            P     P P E  +   P P +  P   P PPAP  P     A  A   P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAP-APAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 36/130 (27%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           G  L P  PPP      +   P   P   +  P P +P        PS  P   P P  P
Sbjct: 186 GAALAPSAPPPTPSAQAVP--PQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPP 243

Query: 170 --------RPPPAPAPAPRAPPPP-PKPGPPPPPPPRGGPAPRPPP----PMPSGSKVPR 216
                   + P  PAP+ R P      PGPP P   + GP     P    P P G    +
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303

Query: 217 PPLGQKHSSS 226
            P     S +
Sbjct: 304 VPPLPLPSQA 313

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP---PPPPPAPR 170
              + PP +        P  +  P  +   P E P   + +PP+ P P      PP +  
Sbjct: 151 QQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGA 210

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 228
           PP      P  P P    GP   P        +PPP           P   K +  SV
Sbjct: 211 PPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSV 268

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 20/70 (28%)

Query: 126 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 185
                P    P     P P     S      +   P PPP  A  P P PA      P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 186 PKPGPPPPPP 195
           P      PP 
Sbjct: 429 PANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
                  P    P P+  P      P +         P+P P  A  P P  P  P +P 
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIP-VPAEPTEPS 425

Query: 190 PPPPPPPRGGPAP 202
           P PP      P  
Sbjct: 426 PTPPANAANAPPS 438

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRPPPP---MPSG 211
           P+  P   P P APR      P PRA        P       +   +   PPP   +P  
Sbjct: 577 PAAAPAAAPKPAAPRVA-VQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPD 635

Query: 212 SKVP 215
             VP
Sbjct: 636 DYVP 639

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 28/115 (24%), Gaps = 12/115 (10%)

Query: 143 LPHEPPASLRPHPPSGPPPPPP---PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP--- 196
           L  EP  +    P  G P       P P  R   A   +                 P   
Sbjct: 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAA 415

Query: 197 ------RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
                 R    P  P P  +  +      G     +   A A  D+   +   +P
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470

Length = 830

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 33/123 (26%), Gaps = 3/123 (2%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
             P          P  +P P      P EP        P   P   P  P P+P P P P
Sbjct: 50  EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKP--KPEKKPKKPKPKPKPKPKP 107

Query: 178 APRAPPPP-PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 236
            P+  P P PK  P            +P  P  + S             S +        
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAP 167

Query: 237 NAP 239
             P
Sbjct: 168 RYP 170

Length = 244

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 20/112 (17%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHP--PSGPPPPPPP--------------PPAPRPPP 173
           +  L PP   A      PPA+       P+ P   P P                  R   
Sbjct: 48  LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
             AP  +AP  P +         R   A    P     +           + 
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
           PA     AP  AP      P+P   P P PR   AP P    P+ + V
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAV 435

Length = 584

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 13/50 (26%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
                 P     A    PA A A  A    P P  P  P       P  P
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 176
           + PPG         PP  PPP      P   PA  R           P    P       
Sbjct: 428 RQPPGAPAPRRDNDPP--PPP---RARPGSTPACARRARAQRARDAGPEYVDPLGALRRL 482

Query: 177 PAPRAPPPPPKPGPPPPP--PPRGGPAPRPPPPMPSGSKVPRPPLG 220
           PA  APPP P   P P       GG  PR PP   +  +  RP  G
Sbjct: 483 PAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRAT-ETLRPDWG 527

Length = 694

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 19/44 (43%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
           P P   PP   PPP       A APA  APP  P P P P P  
Sbjct: 162 PRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 23/86 (26%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
           P          P P   P P P     P P    +      P        P   P G   
Sbjct: 621 PSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDR 680

Query: 202 PRPPPPMPSGSKVPRPPLGQKHSSSS 227
             P  P P+ S  P+      H  SS
Sbjct: 681 DSPDLPRPTTSLHPKLLSAHHHPGSS 706

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 34/114 (29%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 107 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 166
           NE  Q L  L  PP  V         +       +    E   S   H        P  P
Sbjct: 109 NEEEQNLADLLTPPPDVDEDALKEANVNETESSTD----ESDRSSHSHEVRSKSNFPMGP 164

Query: 167 PAPRPPPAPAPAPRAPP------------PPPKPGPPPPPPPRGGPAPRPPPPM 208
           P+P  P  P   P  PP            PP   G PPP P  G P   PPPPM
Sbjct: 165 PSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPL-GPPMIPPPPPM 217

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
             P RV +    +  +  P     P   + P      P S P   P     P P     P
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDP 413

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPP--MP-SGSKVPRPPLGQKHSSSSVGAGAE 233
              +P  P  PG    P P G   P+P  P  MP S + +  P   Q+H          
Sbjct: 414 GLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGG 472

Length = 663

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKP-PPGRAEPLPHEPPA-------------SLRPHPPSGP 159
           P    P           PP +  PP  A P P +P A             +      +  
Sbjct: 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
              P P  AP P  A A  P   P PP+      P    G  P
Sbjct: 540 TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 36/165 (21%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 94  ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 153
           A F           E   +L P +P  G   S           PGR         A+ R 
Sbjct: 756 ALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRT 815

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
                     P   +    PA  P   A PPP +        P    A        +G +
Sbjct: 816 ASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPA---AAGGRARGKNGRR 872

Query: 214 VPRPPLGQKH---SSSSVGAGAEGDANAPKTKLKPFFWDKVLANP 255
            PRPP  +     ++    A A   A AP  + +P    K+   P
Sbjct: 873 RPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMP 917

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P   P     +      P K P    E     P    RP  P  P  P   P   R    
Sbjct: 385 PSTRPKAAAAAN----IPPKEP--VRETATPPPVPP-RPVAPPVPHTPESAPKLTRAAIP 437

Query: 175 PAPAPRAPPPPPKP 188
               P+  PP P  
Sbjct: 438 VDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 20/58 (34%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
           G     P  PA    PAP+ A   P P P    P   P    PAP P       +  P
Sbjct: 201 GDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 29/97 (29%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           PP    PG    +    P     PG   P     P    P P     PP   P  P PP 
Sbjct: 189 PPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPV 248

Query: 174 APAPAPRAPPPPPKPGPP----------PPPPPRGGP 200
               AP  P PPP+P  P           P  PR  P
Sbjct: 249 IQYVAP-PPVPPPQPIIPIQHIRAVTGETPANPRDIP 284

Length = 582

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 128 QGMPPLKPPPGRAEPLPHEPP-ASLRPHPPSGPPP----PPPPPPAP-----RPPPAPAP 177
                       +    ++PP AS +P  P   PP    PP   P P     +P   PA 
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAY 134

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
            P+   P  +P  P   P        P P   +     
Sbjct: 135 QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE 172

Length = 333

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 26/93 (27%), Gaps = 9/93 (9%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGP---------PPPPPPPPAPRPPPAPAPAPRAPPPP 185
           P       LP  P                     P   PP      P  P P      PP
Sbjct: 65  PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPP 124

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P    PPP        P+PPP +P   +   PP
Sbjct: 125 PSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPP 157

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 143 LPHEPPASLRPHPPSGPPP---PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
           +P +P   +       P     P  P PA +P       P  P  P +P PP  P P   
Sbjct: 68  VPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIP--- 124

Query: 200 PAPRPPPPMPSGSKVPRPPL 219
           P P  PP  P     P PPL
Sbjct: 125 PLPPQPPLPPMFPMQPLPPL 144

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           G  P +     A P P     + R +             AP      A AP  P   P+P
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLE--KEVRSLRSAPTAAATAAGAP-LPDFDPRP 399

Query: 189 GPPPPP-PPRGGPAPRPPPPMPSGSKVP 215
             PP P P R   AP    P  + + + 
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 23/95 (24%), Gaps = 3/95 (3%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPR---PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
           PA+  P P   P    P   A     P  A AP      PPP    P   P    P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 205 PPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
                           +   S    A      N+ 
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSA 455

Length = 647

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 149 ASLRPHPPSGPPPP-PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           A+L P   + P    PPP  AP     PA     P P            R     R   P
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP 108

Query: 208 MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
               ++ P  P  +  + ++    A   A AP+ ++  
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPA 146

Length = 484

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 1/85 (1%)

Query: 128 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
           +G        G  +    +P           P       P P       P P       +
Sbjct: 41  KGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPE-ETGEEE 99

Query: 188 PGPPPPPPPRGGPAPRPPPPMPSGS 212
           P P P P P   P P P P    G+
Sbjct: 100 PEPEPEPEPEPEPEPEPEPEPEPGA 124

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 16/41 (39%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
                 P       P  PP   P    PPPPP P PPPPP 
Sbjct: 157 SSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPS 197

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
            P G     PPP A   PPAP        PPP+   PP  PPRG   P
Sbjct: 905 APGGDAASAPPPGAG--PPAPPQ----AVPPPRTTQPPAAPPRGPDVP 946

Length = 991

>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 17/81 (20%)

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP----PPPPAPRPP 172
              P    +T   +        +  PLP  P        PS P P      P PP P  P
Sbjct: 109 PQRPVMTRATSTTV--------QTTPLPQPPST-----APSYPGPQYQGYHPMPPQPGMP 155

Query: 173 PAPAPAPRAPPPPPKPGPPPP 193
             P      PP   +P  PPP
Sbjct: 156 APPYSLQYPPPGLLQPQGPPP 176

Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface. Length = 177

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
           LP +   P +VGS L  +P +   PG                  + P P P P PA  PP
Sbjct: 77  LPSMDLGP-QVGSFLAQLPAMPSMPGLLGA--------------AAPVPAPAPAPAAAPP 121

Query: 173 PAPAPAPRAPPPPPKPGPPPP 193
            APAPA    P  P P    P
Sbjct: 122 AAPAPAA-DTPAAPIPDAVQP 141

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 118 PPPGRVGSTLQ--------GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           PPP  +G  +          +P +   P     L   P     P       P P P PAP
Sbjct: 57  PPPNPLGQLMNWPALPQDFQLPSMDLGPQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAP 116

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPP 195
              P  APAP A   P  P P    P
Sbjct: 117 AAAPPAAPAP-AADTPAAPIPDAVQP 141

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 37/137 (27%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 121 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPAPRPPPAP 175
           G+ G T +G    KP P +       P  S +P  P  P     P  P  P  PR    P
Sbjct: 547 GKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRP 606

Query: 176 A--PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 233
               +P+ P     P  P  P     P   PPP  PS  + P  P   K           
Sbjct: 607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKP------- 659

Query: 234 GDANAPKTKLKPFFWDK 250
               +PK    P F +K
Sbjct: 660 --PKSPKPPFDPKFKEK 674

Length = 943

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP----APRP 204
           G          P P PAPAPA  + P P  P  P P P   G     AP P
Sbjct: 42  GIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92

Length = 153

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 192
           PP PP P P P P P P P P  P P P P   P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDP-TPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|218108 pfam04487, CITED, CITED

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 28/137 (20%), Positives = 30/137 (21%), Gaps = 35/137 (25%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPP----ASLRPHPPSGPPPPPPPPPA 168
           P      R+G      P   P   RA    L H P     AS RP      P     P  
Sbjct: 15  PDGAKGARMGMNSLAAPNHGPHDLRALMGTLLHYPGGGMDASGRPRSAMSGPMGGGHPHQ 74

Query: 169 PRPPPA------------PAPAP-----------------RAPPPPPKPGPPPPPPPRGG 199
             P                 P P                  A  P   PG   P   R G
Sbjct: 75  SMPAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAPAGHPGGGGPQQFRPG 134

Query: 200 PAPRPPPPMPSGSKVPR 216
               P         +P 
Sbjct: 135 AGQPPGMQHMPAPALPP 151

CITED, CBP/p300-interacting transactivator with ED-rich tail, are characterized by a conserved 32-amino acid sequence at the C-terminus. CITED proteins do not bind DNA directly and are thought to function as transcriptional co-activators. Length = 206

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 32/112 (28%), Gaps = 8/112 (7%)

Query: 107 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 166
           N + +    L P      +T +    L   P R          S     P  P  P    
Sbjct: 28  NFDAERDDFLTPLGSTSEATSEDDDDL--YPPRETGSGGGVATSTIYTVPRPPRGPEQTL 85

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
             P   P       +   PP P P PP   RG  +PR      S   + +  
Sbjct: 86  DKPDSLP------ASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVN 131

Length = 580

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
             P+  P    EP+P  P  +    P   P P P P P P+P       P+    P +P 
Sbjct: 68  PEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127

Query: 190 PPPPPPPR-------GGPAPRPPPPMPSGSKVPRP 217
           P  P                    P+ S S  PR 
Sbjct: 128 PASPFENTAPARPTSSTATAAASKPVTSVSSGPRA 162

Length = 246

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 28/67 (41%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           PP+  P   V  T   +  +   P  +EP    P        P+GPP P  PP   R PP
Sbjct: 41  PPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPP 100

Query: 174 APAPAPR 180
            P P P+
Sbjct: 101 LPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 29/104 (27%), Positives = 38/104 (36%)

Query: 101 GTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPP 160
             A +   +G    P + P  +   T  G+P + PPP      P  PP +     P G  
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSA 492

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
            P     A   PP P    +  P      P  PPPP   P+P P
Sbjct: 493 LPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
           P      + +    +     P+  PPP P  P     P    A   P PPP    PP P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP---SAPKTKQAATTPSPPPAKASPPIPV 417

Query: 196 PRGGPAPRPPPPMPSGSKVPRPP 218
           P     P  P P P  +    PP
Sbjct: 418 P---AEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
               PP  APA + P PP +PG     P + G   +P    P   
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 145 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP--PPKPG 189
           ++P +S  P  P   P PPPP       PA +P P+A  P  PP  G
Sbjct: 200 YKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246

Length = 539

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
             PP      PPPP   + PP P  +P    PPP     PPPP     +P PP
Sbjct: 5   SPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 27/122 (22%), Positives = 35/122 (28%), Gaps = 11/122 (9%)

Query: 85  LDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP 144
                   T++  +  G  +      + L  L                  P    A PLP
Sbjct: 10  AAAAFEVITSAQLSRIGRIE---RELRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLP 66

Query: 145 HEPPASLRPHPPSGPPPPPPPPPAPRP-----PPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
               A+     P  PPP PP P           P+  PAP A P P +P  P        
Sbjct: 67  ---AAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFA 123

Query: 200 PA 201
            A
Sbjct: 124 AA 125

Length = 931

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 23/107 (21%), Positives = 26/107 (24%), Gaps = 19/107 (17%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
                  P     AP P  A + A    PPP  P P           P         S V
Sbjct: 50  AAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQP---------SAV 100

Query: 215 PRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVW 261
           P P            A A  +   P     PF            +VW
Sbjct: 101 PAPS----------AAPAPAEPVEPSLAANPFAAAIEWLLGGRWVVW 137

Length = 931

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 20/66 (30%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
              H   +S      S P    P P   +P  +      +  P PK   P PP     PA
Sbjct: 10  SQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPA 69

Query: 202 PRPPPP 207
                P
Sbjct: 70  ATTQTP 75

Length = 590

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSG-PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
           P +PP G A+ +     A+     P     PP    PA  P  A  P P   PP   P  
Sbjct: 67  PTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKP-VKPPKQPPAG 125

Query: 191 PPPPPPRGGPAPRPP 205
             P  P   P P+P 
Sbjct: 126 AVPAKPTPKPEPKPV 140

Length = 226

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 50/190 (26%), Positives = 60/190 (31%), Gaps = 14/190 (7%)

Query: 39  PLPLPLLLPLLLPLCMPVLPPLPLAPHKILSLSDYSVGSGNSKEEKLDIGKFDGTASFGA 98
           P  LP   P L P       P P AP      S +  G G      L  G          
Sbjct: 234 PQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHH-GPGPPMPHALQQGP---VFLQHP 289

Query: 99  VGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPG---RAEPLPHEPPASLRPHP 155
                + F      +PPL  P      +          P    R +PLP  P       P
Sbjct: 290 SSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPP 349

Query: 156 PSGPPPPPPPPPAPRPP--PAPAPAPRAP---PPPPKPGPPPPPPPRGGPAPRPPP--PM 208
           P+ P P  P      PP    P+P P+ P   PPPP   P    P    P+  PPP   M
Sbjct: 350 PTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLM 409

Query: 209 PSGSKVPRPP 218
           P    +   P
Sbjct: 410 PQSQPLQSVP 419

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 136 PPGRAEPLPHEPPASL-RPHPPSGPPP-PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
                        A L R    +GPP  P PP PA    P         P  P+  P PP
Sbjct: 4   GAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHP-------EFPERPRDAPAPP 56

Query: 194 PPPRGGPAPRPPPPMPSG 211
            PPR     R P P+   
Sbjct: 57  APPRATDGDRDPQPLADA 74

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 153 PHPPSGPPPPPPPPP-----------APRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGP 200
           P+PP   P P  P             AP+P   P     A  P    P   P   P+  P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 201 APRPPPPMPSGSKVPRPPLGQKHSSS 226
                 P P       P   Q H  S
Sbjct: 234 VQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 133 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
             P  GR    P    AS  P P +GPP PP   P PR    PA  PR P  PP 
Sbjct: 895 FGPGTGRVATAPGGDAAS-APPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948

Length = 991

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 33/144 (22%), Positives = 41/144 (28%), Gaps = 34/144 (23%)

Query: 101 GTAKSFNENGQVLPPLKPPPG--RVGSTLQGMP-------PLKPPPGRAEPLPHEPPASL 151
           G   SF E   V     PPPG      +  G+P         K  P + +          
Sbjct: 193 GRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEK 252

Query: 152 RPHP-PSGPPPPPPPPPAPR---------------------PPPAPAPAPRAPPP---PP 186
              P P     P  P  AP                           +P+  +P P    P
Sbjct: 253 SSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312

Query: 187 KPGPPPPPPPRGGPAPRPPPPMPS 210
           KP   P   PR   +PRP P  P 
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 33/128 (25%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEP-PASLRPHPPSGPPPPPPPPPAPR 170
           V P  +P            P     P      P +P     +   P  P  P P    P+
Sbjct: 749 VEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 808

Query: 171 PPPAPAPA------PRAPPPP-PKPGPPPPPPP----------RGG---PAPRPPPPMPS 210
            P AP P       P AP P   +P  P  P P          R G   P  +P  P+PS
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPS 868

Query: 211 GSKVPRPP 218
              +  PP
Sbjct: 869 LDLLTPPP 876

Length = 1355

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 35/170 (20%), Positives = 42/170 (24%), Gaps = 28/170 (16%)

Query: 91  DGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPAS 150
              AS  AV   A S  +    L        R  S+    PP   PP  A P P    + 
Sbjct: 154 AAGASPAAVASDAASSRQAALPLS-SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

Query: 151 LRPHPPSGPPPPP-------------------------PPPPAPRPPPAPAPAPRAPPPP 185
           +     S  P P                          P    P P PAP   P      
Sbjct: 213 ISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEA 272

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGD 235
                P   P     +    P   S S  P  P      SS   + +   
Sbjct: 273 SGWNGPSSRPGPA--SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS 320

Length = 1352

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 15/60 (25%), Gaps = 3/60 (5%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
              P P      P  PP +    P +    P    P    P    P        PKP   
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKP---RRERKPKPASL 72

Length = 475

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 135 PPPGRAEPLPHEPP-ASLRPHPPSGPPPPPPP-PPAPRPPPAPAPAPRAPPPPP-KPGPP 191
           P   R           + R  PP  P PP P     P  P  P  AP  P PP    G  
Sbjct: 7   PRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATDGDR 66

Query: 192 PPPPPRGGPA 201
            P P     A
Sbjct: 67  DPQPLADALA 76

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 26/79 (32%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
           P +G     PP   P   P P P+P A P       P        P+          S  
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136

Query: 215 PRPPLGQKHSSSSVGAGAE 233
              P     ++S++  G+E
Sbjct: 137 TSVPSSGSDAASTLVVGSE 155

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 110 GQVLPPL-KPPPGRVGSTLQGMPPLKPPPGRAE----PLPHEPPASLRPHP--PSGPPPP 162
            Q+ P + + P G       G PP      + +    PL   P  S+ P P  P GP  P
Sbjct: 376 MQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGW-PRMSMMPTPMGPGGPLRP 434

Query: 163 --PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
               P  A R P   A    A   PP      PP  +  P  +  P   S
Sbjct: 435 NGLAPMNAVRAPSRNAQN--AAQKPPMQPVMYPPNYQSLPLSQDLPQPQS 482

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 138 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA-----PAPAPRAPPPPPKPGPPP 192
           G       +P A+    P    P      P PR   A     P  A RA       G PP
Sbjct: 568 GARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627

Query: 193 P 193
           P
Sbjct: 628 P 628

Length = 830

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 120 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 179
           PG    T+Q  PP  P        P  PP +        PP  P  PPA   P APA   
Sbjct: 48  PGLEDVTVQTTPPP-PASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 31/78 (39%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 156 PSGPPP--PPPPPPAPRP------PPAPAPAPRAPPP----PPKPGPPPPPPPRGGPAPR 203
           PSG  P  P P   AP P      P APAPA   P P    PP   P  PPP       R
Sbjct: 76  PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPAR 135

Query: 204 PPPPMPSGSKV--PRPPL 219
           P P  P  ++   P PPL
Sbjct: 136 PAPACPPSTRQCPPAPPL 153

Length = 280

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 12/52 (23%), Positives = 13/52 (25%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
            P    PAP        +      P      P PPP     P  PP      
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
           G  PP   P A     A    P  P    P P PP    P    A +PP P P+    P 
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPT 180

Query: 217 P 217
           P
Sbjct: 181 P 181

Length = 418

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 12/48 (25%), Positives = 13/48 (27%)

Query: 149 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
           AS     P+         PA     A   A  AP  P  P       P
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 191
           P +    +  P   +     +       PPPP  PP  +      P    P P   P   
Sbjct: 2   PYQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQ-QQQGHFMPPQPQPYPKQSPQQQ 60

Query: 192 PPPPP 196
            PP  
Sbjct: 61  QPPQF 65

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 162 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP--PRGGPAPRPPPPMPSGSKVPRPP 218
                  P       P  + P     P PP  PP   +G   P  P P P  S   + P
Sbjct: 4   QQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQP 62

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 43.1 bits (101), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           PP PP P P P P P P P  P P P+P P   P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPD-PTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 36/120 (30%), Positives = 42/120 (35%), Gaps = 20/120 (16%)

Query: 111 QVLPPLKP------PPGRVGSTLQGMPPLKPPPGRAEPLPHEP---PASLRPHPPSGPPP 161
           QV P   P       P R G  +Q  P +   PG  +  PH P   P  +RP    G  P
Sbjct: 156 QVQPQFGPNPQQRINPQRFGFPMQ--PNMGMRPGFNQMPPHMPGMPPNQMRP----GFNP 209

Query: 162 PPPPPPAPRPPPAPAPAPRAPPP--PPKPG--PPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
            P  PP P     P   P    P   P+PG    P  P       RP    P+    P P
Sbjct: 210 MPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFN-PNQGMNPPP 268

This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279

>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 30/118 (25%), Positives = 34/118 (28%), Gaps = 25/118 (21%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPS--GPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
           M PL     R+   P        P+ PS  G     P PP P    AP+           
Sbjct: 6   MQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPS----------- 54

Query: 188 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
                 PPP GG                  PLGQ+  S   G G  G    P     P
Sbjct: 55  ----HRPPPYGGS--------NGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSP 100

This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear. Length = 489

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 42.7 bits (100), Expect = 6e-04
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA-PAP 177
           P   + + +     +      AE +P  P A+     P+   P P   P P PPP    P
Sbjct: 334 PSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAA-----PAVVKPGPMEIPTPVPPPGLAIP 388

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 237
           +  APP    P    P              +P         L  K  S       +G   
Sbjct: 389 SLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKML 448

Query: 238 A 238
           A
Sbjct: 449 A 449

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 24/110 (21%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAP---APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
           R    + P PP         P  PAP    P  P       P  PP  +  P      P 
Sbjct: 52  RSKKENEPAPPSTMIATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSAQSEPERN--EPR 109

Query: 209 PSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNS 258
           P  + +     G +  S   G G          +       +V A  D S
Sbjct: 110 PEETPIFAYSSGDQGGSKRAGHGDTDRRQDDNREDNSLPAGEVSAENDLS 159

Length = 376

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 44/211 (20%), Positives = 57/211 (27%), Gaps = 66/211 (31%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPP------ASLRPHPPSGPPPPPPPPP 167
           P +     R   T +G     PPP  A P     P      A+L   P + P PP PPPP
Sbjct: 259 PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPP 318

Query: 168 APRPPPA-------------PAPAPRA---------------PPP----------PPKPG 189
           AP                  P P PR                PP            PK  
Sbjct: 319 APAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRA 378

Query: 190 PPP---------------------PPPPRGGPAPRPPP-PMPSGSKVPRPPLGQKHSSSS 227
             P                            P P   P P P+      PP       S+
Sbjct: 379 SLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSA 438

Query: 228 VGAGAEGDANAPKTKLKPFFWDKVLANPDNS 258
                +G A  P+ +      +    +PD++
Sbjct: 439 EPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 34/161 (21%), Positives = 46/161 (28%), Gaps = 28/161 (17%)

Query: 86  DIGK-FDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQ-GMPPLKPPPGRA--- 140
           D+GK FD    FG       +     Q  P           + +            A   
Sbjct: 57  DVGKDFD----FGGETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTD 112

Query: 141 -EPLPH-EPPASLRPHPPSGPPPPPPPPPAPRPPPAPA----------------PAPRAP 182
            E +P  +P  SL    P   P PP  P +   P  PA                      
Sbjct: 113 PEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQL 172

Query: 183 PPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
           P PP+   P   PP +     + PP  P G   P     ++
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQ 213

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 20/105 (19%), Positives = 24/105 (22%), Gaps = 11/105 (10%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
            L P            P  P P P P+P P    P           P     P      P
Sbjct: 358 GLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTP---SPPPAKASPP 414

Query: 210 SGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLAN 254
                            S    A      P   L+   W ++LA 
Sbjct: 415 IPVPAEPTE-------PSPTPPANAANAPPSLNLEE-LWQQILAK 451

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (101), Expect = 7e-04
 Identities = 19/108 (17%), Positives = 25/108 (23%), Gaps = 2/108 (1%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            +PP    P    S      P         P    PPAS     P+ P P          
Sbjct: 369 EVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
                          +P       P      R     P+ S + + P 
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474

Length = 647

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 14/49 (28%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
           P +     P   PAP           AP P P   P P        A R
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVR 436

Length = 584

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRP 204
            P A         P P PPP  A +  PA        P       PP       GPA   
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111

Query: 205 PPPMPSGSKVPRPPLGQ 221
               P      + P+  
Sbjct: 112 IQTEPGQLYPVQVPVMV 128

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 21/64 (32%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           G+PPL    G   P  +    ++ P PP  P          R  P   P P         
Sbjct: 178 GLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA 237

Query: 189 GPPP 192
           G PP
Sbjct: 238 GRPP 241

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Length = 401

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 148 PASLRPHPPSGP-PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
             +        P P  P  PP P   P P   P + PP      PPP     G    PPP
Sbjct: 123 LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPP 182

Query: 207 PMPSGSKVPRPPLGQKHSSS 226
            +   +    P   +    +
Sbjct: 183 QV---TYQSVPVPNRIQRKT 199

Length = 475

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           P  +  P  +E    EP        P   P PP P PAP    APA A   
Sbjct: 210 PAEEEAPAPSEA-GSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR-----APPPP 185
           P    PP      P   P  +   P   P   P P P P+P P P P P       P   
Sbjct: 61  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120

Query: 186 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
            KP  P P  P    AP  P    + +   +P
Sbjct: 121 VKPVEPRPASPFENTAPARPTSSTATAAASKP 152

Length = 246

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
            P+   P P          +    P A    P P P PP  P   PA R 
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 42.2 bits (100), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 17/61 (27%)

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
           A     APA A  A    P                 P  P    +  P  P G +  + +
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143

Query: 228 V 228
           V
Sbjct: 144 V 144

Length = 464

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 29/122 (23%), Positives = 36/122 (29%), Gaps = 13/122 (10%)

Query: 116 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP--- 172
           L+P P     ++   P  + PPG   PL    P    P       P   P PAP  P   
Sbjct: 451 LEPGPLHDQHSMAPCPVAQLPPG---PLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVR 507

Query: 173 ---PAPAPAPRAPP----PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
               + +  P        P P P  P P P      P  P P     + P    G     
Sbjct: 508 PWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVR 567

Query: 226 SS 227
             
Sbjct: 568 ER 569

Length = 935

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 163 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
            PPPP  +  P P    ++PPPP K      PPP   P  + PPP     K P PP
Sbjct: 5   SPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPP---PVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 19/77 (24%), Positives = 22/77 (28%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
               PPP +         P  P P    P P  PP        S   P   P  +  PPP
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 174 APAPAPRAPPPPPKPGP 190
            P     +P     P  
Sbjct: 580 IPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 27/92 (29%), Positives = 29/92 (31%)

Query: 128 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
             + P    P      P  P   L P P      P        P PA  P    P  PP+
Sbjct: 50  HTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQ 109

Query: 188 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
           P  P  P P   P P  PP  P     P  PL
Sbjct: 110 PQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPL 141

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 120 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 179
                     + PL      A P P+ PP    P PP   P PPPP             P
Sbjct: 46  YYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYM------ADP 99

Query: 180 RAPPPPPKPGPPP 192
           + PPPP  PGPP 
Sbjct: 100 QEPPPPY-PGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 24/139 (17%), Positives = 31/139 (22%), Gaps = 26/139 (18%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPP-PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR-- 170
              +P P     +      +       A      P A+  P P + PP P    PA R  
Sbjct: 488 AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAG 547

Query: 171 ----------------------PPPAPAPAPRAPPPPPKPGPPPPPPPRGGP-APRPPPP 207
                                    A A    AP   PKP  P        P A      
Sbjct: 548 GAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGD 607

Query: 208 MPSGSKVPRPPLGQKHSSS 226
            P           +   + 
Sbjct: 608 APPNGAARAEQAAESRGAP 626

Length = 830

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 13/53 (24%), Positives = 14/53 (26%)

Query: 166 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
                 PP PA A     PPP P           P     PP     + P   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 19/70 (27%), Positives = 20/70 (28%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P  P  G  G    G  P  P    A       PA+  P       P      A  P PA
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 175 PAPAPRAPPP 184
            AP P     
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 29/125 (23%), Positives = 34/125 (27%), Gaps = 13/125 (10%)

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP---PPPPAPRPPP 173
           +P PG            +   G     P+  PAS  P       P     P     R   
Sbjct: 152 RPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDY 211

Query: 174 APAPAPRAPPP----PPKPGPPPPP--PPRGGPAPRPPPPMPS---GSKVPRPPLGQKHS 224
              P P    P      +P PPP      RGGP P      P        P P   Q   
Sbjct: 212 D-HPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAP 270

Query: 225 SSSVG 229
           +   G
Sbjct: 271 APGPG 275

Length = 617

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 42.1 bits (100), Expect = 0.001
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
            A  P  A APA  AP       P P P     PA   P    +  K P
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243

Length = 547

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 226
           AP+PP  PAP P AP PPP P PP P P P   P     P +            +   ++
Sbjct: 6   APKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQQKAGGTA 65

Query: 227 SV 228
           S+
Sbjct: 66  SL 67

Length = 94

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 155 PPSGPPPPPPPPPA--------PRPPPAPAPAPRAPPPPPKPGPPPPPPPRG-GPAPRPP 205
             + P P  P  PA         R   A A AP   P PP P     P PR    A  PP
Sbjct: 6   RLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRASDPP 65

Query: 206 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
           P  P+ +   +PP     S+ +  A A G A A 
Sbjct: 66  PEAPTDADPAQPPDDPDASAHT-AAIASGAAGAR 98

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAP----PPPPKPGPPPPPPPRGGPAPRP 204
              P+           P  P A AP P  P    P PP    PP P P   P P P
Sbjct: 126 AAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           PP+  P       A +  P    A    P PP    P PP     P P P    P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Length = 418

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 150 SLRPHPPSGPPPPPPP--PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
           ++                PPAP P PA   AP AP       P   P P
Sbjct: 42  AMLDEDLGAVAASAQAYAPPAPAPLPAALVAP-APAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
            P + R   P   PPPPPPPP P  P      P    P         P 
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 153 PHPPSGPPPPP--PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
            +PP      P    P   + PP P   P+       P P P P P+  P  + PP   S
Sbjct: 9   QYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMP-PQPQPYPKQSPQQQQPPQFSS 67

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P     E    EP       P         P P       P P P  P P P+P P P P
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE-PEPEPEPEPEPEP 118

Query: 195 PPRGGPAPRPPPPMP 209
            P  G A      +P
Sbjct: 119 EPEPGAATLKSVALP 133

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 25/101 (24%), Positives = 28/101 (27%), Gaps = 16/101 (15%)

Query: 133 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 192
           L+   G  EP P E   +         P P          P P        P P P   P
Sbjct: 106 LEKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP 165

Query: 193 PPPPRGG-------------PAPRPPP---PMPSGSKVPRP 217
                               PAP+PPP   P PS   V R 
Sbjct: 166 VDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           PPS P P P P P P P P P P P  P P  +P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPE-PTPAYQP 952

Length = 1250

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 1/109 (0%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           Q + P +P            P   P P +    P+  PA  +P   +             
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF-A 457

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
           P            P  +      P P        P P+   +K  RPPL
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 1/113 (0%)

Query: 135 PPPGRAEPLPHEPPASLRPHP-PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           PP    +  P +P  + +P P P    P   P P   P  +    P      P   P  P
Sbjct: 344 PPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQP 403

Query: 194 PPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 246
             P   PA   P   P  +  P  P  Q + + +      G+A   + +   F
Sbjct: 404 QQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF 456

Length = 1355

>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 13/29 (44%), Positives = 13/29 (44%)

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
             P P P P P  PPP P P P P    R
Sbjct: 3   GEPGPKPGPTPTPPPPAPTPEPTPAKHER 31

This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus. Length = 460

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 180
           P   P  R      +  AS +P   + PPP   P    R  P P   PR
Sbjct: 170 PANEPRTRRPLSAPDDEASPQPKSLATPPPVAAP---SRRTPRPRRKPR 215

Length = 226

>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 98  AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 157
           A G   +   + G V   L  P  R    +       PP   A P+P  P A+      +
Sbjct: 82  AEGANLQGARDAGLVPVELSTPVARAPQVID----TAPPNDVATPVPSVPEATAEAAAKA 137

Query: 158 GPPPPPPPPPAPRPPP---APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
           GP             P     +   RA     +   P   PP+   A     P+ SG +V
Sbjct: 138 GPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRV 197

Length = 292

>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function (DUF1750)

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAP--PPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           P+ P PP     +   PP P P       P  P+PG    PP R G    P     S
Sbjct: 200 PTIPLPPQMAGQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGHKAPRGHRAS 256

This is a fungal domain of unknown function. Length = 669

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 28/214 (13%), Positives = 51/214 (23%), Gaps = 54/214 (25%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
              + E        +                 A  P    A A  A     +P       
Sbjct: 46  EEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAAR 105

Query: 196 PRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANP 255
           P    A RP     +  K    P  +K    +   G  G     + +             
Sbjct: 106 PAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRR------------- 152

Query: 256 DNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLS 315
                                        + + +KKK    +  P+ + I +        
Sbjct: 153 ------------------------RRGRRRRRKKKKKQKPTEKIPREVVIPE-------- 180

Query: 316 IMLRALNVTLEEVCDALLEGNELPAELIQTLLKM 349
                  +T+ E+ + +       AE+I+ L K+
Sbjct: 181 ------TITVAELAEKM---AVKAAEVIKKLFKL 205

Length = 746

>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 138 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           G   PLP     + +P P    P   P  P P   P P          P P    P
Sbjct: 50  GELVPLPG--TTATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSP 103

NC10 stands for Non-helical region 10 and is taken from human COL15A1. A mutation in this region in human COL18A1 is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor. Endostatin also binds a zinc ion near the N-terminus; this is likely to be of structural rather than functional importance according to. Length = 291

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           PPP  +   APA A  AP    +   P  P
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASP 398

Length = 509

>gnl|CDD|221009 pfam11162, DUF2946, Protein of unknown function (DUF2946)

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 183
            LP   P  L     +   PPPPP   P     P+  PRAPP
Sbjct: 78  ALPAALPLLLALVRLAAAVPPPPPASLPPRSRWPSAQPRAPP 119

This family of proteins has no known function. Length = 119

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
            PP    P  PAP     P  P   P PPPPP   P  R
Sbjct: 286 LPPEDGRPLRPAP----APARPVAAPAPPPPPDDTPRGR 320

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRP 204
           + P   R             PPA    P P   PR    P +P  P P       P  + 
Sbjct: 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169

Query: 205 PPP 207
              
Sbjct: 170 VEA 172

Length = 256

>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21)

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/101 (26%), Positives = 29/101 (28%), Gaps = 24/101 (23%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRP-HPPSGPPPPPPPPPA--PRPPPAPAPAPRAP----- 182
              K    R       P     P   PSG P  P  PP        A + +P A      
Sbjct: 223 VASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMV 282

Query: 183 ----------------PPPPKPGPPPPPPPRGGPAPRPPPP 207
                             PP P  P PP     PAP PPPP
Sbjct: 283 YVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPP 323

Length = 326

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 22/90 (24%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP-PPPPRGGPAP 202
           P+  P        +           P     PA A  + PP   PG P  P PP    +P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 203 R----PPPPMPSGSKVPRPPLGQKHSSSSV 228
                PP P    S  P P      + S  
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 21/86 (24%), Positives = 22/86 (25%), Gaps = 6/86 (6%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP----PPPPPPPPAPRPPP 173
              GR         P  P P         P A+    P   P     P P     P PP 
Sbjct: 860 AAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPG 919

Query: 174 APAP--APRAPPPPPKPGPPPPPPPR 197
            P P    R  PP     P P     
Sbjct: 920 GPDPRGGFRRVPPGDLHTPAPSAAAL 945

Length = 1352

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 27/86 (31%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPA-PRPPPAPAPAPRAPPPPPKPGPPPPP--PPRGGP 200
                 S    P    P PP  P A P   P   P P A PPP +   P  P   PRG P
Sbjct: 4   ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63

Query: 201 A----PRPPPPMP----SGSKVPRPP 218
           A        PP P      +    PP
Sbjct: 64  AGVTFSSSAPPRPPLGLDDAPAATPP 89

Length = 318

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
           PP G     +   PP         P P EP A      P  P   P  PP+P  PPAPA 
Sbjct: 41  PPVGDPRPPVVDTPPPVSA-VWVLPPPSEPAAPPPDPEPPVPG--PAGPPSPLAPPAPAR 97

Query: 178 APRAPPPPP 186
            P  PPP P
Sbjct: 98  KPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 20/136 (14%)

Query: 115 PLKPPPGR--VGSTLQGMPPLKP--PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           PL+  P +  V +  Q +PP     P       P + P +  P    G P   PPP  P 
Sbjct: 414 PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPT 473

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP----------------PPMPSGSKV 214
             PA  P   +   PP    P      G   P PP                PP P  S  
Sbjct: 474 STPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPS 533

Query: 215 PRPPLGQKHSSSSVGA 230
           P P +    S +S  A
Sbjct: 534 PEPTVVNTPSHASQSA 549

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP-HPPSGPPPPPPPPPAPRPPPAPAP 177
           P  +V + L   P  + P    +     PP+   P   P       P  P P+  P   P
Sbjct: 65  PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPY-YP 123

Query: 178 APRAPPPPP--KPGPPPPPPPRGGPAP---RPPPPMPSGSKVPRPPL 219
            P  P PPP  +P    P PP   P     + PP  P   + P P  
Sbjct: 124 PPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQA 170

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 226
            +        P P+  PPPP P PP P P    P P PPPP P+ ++       Q  + S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 227 SVG-AGAEGDANAPKTKLKPFFWDKV---LAN 254
           S      E    +P     P   DK    LA+
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEEIDKAAKNLAD 606

Length = 620

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 16/70 (22%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAP------APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
               PP P P     R             AP A        P P   PR    P P P  
Sbjct: 351 AAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGA-PLPDFDPRPRGPPAPEPAR 409

Query: 209 PSGSKVPRPP 218
            + +     P
Sbjct: 410 SAEAPPLVAP 419

Length = 504

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 9/41 (21%), Positives = 10/41 (24%)

Query: 162 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
             P PP   P   P   P  P              + G A 
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQ 130

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/99 (20%), Positives = 22/99 (22%), Gaps = 12/99 (12%)

Query: 125 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR---------PPPAP 175
                 P    PP  A P     PA+    P            A R         P    
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 176 APAPRAPPPPPKPGPPP---PPPPRGGPAPRPPPPMPSG 211
           A AP AP                    P PR P    + 
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151

Length = 484

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 137 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 184
           P        +         PS   P P   PAP P P  AP P +  P
Sbjct: 388 PANLLHNAPQAAP-----APSAAAPEPKHQPAPEPRPVLAPTPASGEP 430

Length = 584

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 14/55 (25%), Positives = 15/55 (27%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
                A   P     +      S    P     AP PPP P   P  PP     G
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           E   ++     +  PP P P PA    PAP     A      P   P P
Sbjct: 46  EDLGAVAASAQAYAPPAPAPLPAALVAPAP-----AAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 178 APRA---PPPPPKPGPPPPPPPRGGPAPRPPPP 207
            PRA   P P P+P PPPPPP    P   P  P
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEP 292

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 185 PPKPGPPPPPPPRGGPAPRPPPPMPSG 211
           PP   PPPPPPP   P  +PPPP P G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31

Length = 2365

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 16/45 (35%), Positives = 16/45 (35%)

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
           GP P P PP    PP          P  P P   PPP P   P  
Sbjct: 161 GPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 116 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 175
             P  GRV +   G     PPPG   P P +        PP    PP  PP  P  PPA 
Sbjct: 895 FGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVP-----PPRTTQPPAAPPRGPDVPPAA 949

Query: 176 A 176
            
Sbjct: 950 V 950

Length = 991

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
           P  P     P PP     PPPP  +P     P P  ++PPPP      PPPP
Sbjct: 6   PPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 12/76 (15%), Positives = 18/76 (23%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            +S  P   S          + +  P  + +PR     P        P          P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 208 MPSGSKVPRPPLGQKH 223
            PS +  P        
Sbjct: 61  PPSVTLPPAATTQTPQ 76

Length = 590

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 25/138 (18%), Positives = 35/138 (25%), Gaps = 15/138 (10%)

Query: 105 SFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPP 164
            ++ + Q  PP+   P          P  +PPP +A              P     P   
Sbjct: 48  PWDPSPQAPPPVAQLPQ---------PLPQPPPTQALQALPAGDQQQHNTP--TGSPAAN 96

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP---RPPLGQ 221
           PP     P  PA  P     P +  P   P          P   P+  +     +   G 
Sbjct: 97  PPATFALPAGPAG-PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGA 155

Query: 222 KHSSSSVGAGAEGDANAP 239
             S            N  
Sbjct: 156 PASGQLPSQQQSAQKNDE 173

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 1/107 (0%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
           +  L+P P +         P +     AEP+  +     R    + P P   P     P 
Sbjct: 2   IHVLEPRPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPV 61

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK-VPRPP 218
                 P  P   P      P    G P   P P  P     +P PP
Sbjct: 62  TPTEGKPVRPKGLPILALAGPVGELGQPMDLPAPANPGDPLALPEPP 108

Length = 300

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
           P PP PP   PPP P      PPP     PP     +     R    +
Sbjct: 259 PAPPQPPEEEPPPPP------PPPEDDDDPPEDEEEQDDAEDRALEEI 300

Length = 584

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPA 178
           P +  PPP P PPAP PPPA  P 
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 6/41 (14%), Positives = 6/41 (14%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
                  A  P     P P                    PA
Sbjct: 52  AEASAAAAQAPYQVATPTPVQSQRVDPAAASGQDSTEARPA 92

Length = 92

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 29/111 (26%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPP--PPPAPRPPPAPAPAPRAPPPPPKPGPP 191
                  E  P E      P  P G P  PP  P PAP P  A A A  A  P     P 
Sbjct: 101 SMSEPATENKPAEVTT---PVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157

Query: 192 PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTK 242
              P     A   P    +  K  +     K ++      A+      KTK
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208

Length = 209

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 19/88 (21%), Positives = 21/88 (23%), Gaps = 13/88 (14%)

Query: 118 PPPGRVG----STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P   R        ++      PP     P P  P           P  P  P  AP PP 
Sbjct: 7   PRAARRSFDYARLMRRAARAGPPG---TPAPPGPAEDA------HPEFPERPRDAPAPPA 57

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPA 201
            P        P P          R   A
Sbjct: 58  PPRATDGDRDPQPLADALAEAMARAAAA 85

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 16/46 (34%), Positives = 16/46 (34%)

Query: 166 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
                PP APA  P APP  P  G   P     G  P    P P  
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGS 135

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 12/39 (30%), Positives = 12/39 (30%)

Query: 163 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
                AP    APA A  A P P    P       GG  
Sbjct: 81  AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV 119

Length = 547

>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 124 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 183
           GS+ +   P  P P R    PH  P +  P P  G   P       R   A +P+PR PP
Sbjct: 76  GSSSEDERPADPRPSRR---PHAQPEASGPGPARGARGPAGSRGRGRR--AESPSPRDPP 130

Query: 184 PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
            P          PRG  +          +  P  P  QK
Sbjct: 131 NPKGA-----SAPRGRKSACADSAALLDAPAPAAPKRQK 164

Length = 290

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 9/39 (23%)

Query: 127 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP 165
           +  +PP  PPP      P  PP      PPS PPPPPPP
Sbjct: 1   MASLPPGNPPP------PPPPPGF---EPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
           AP    A AP P A PP P   P   PPPR     +PP   P G  VP
Sbjct: 905 APGGDAASAPPPGAGPPAP---PQAVPPPRT---TQPPAAPPRGPDVP 946

Length = 991

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 40.6 bits (94), Expect = 0.003
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 159 PPPPPPP----PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           P  P  P      AP P PAPAPA  APP  P P    P       AP P    P+
Sbjct: 94  PAMPSMPGLLGAAAPVPAPAPAPAA-APPAAPAPAADTP------AAPIPDAVQPA 142

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 18/63 (28%), Positives = 18/63 (28%)

Query: 143 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
           LP          P      P   PP P  P             P  GPPPP       A 
Sbjct: 179 LPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAG 238

Query: 203 RPP 205
           RPP
Sbjct: 239 RPP 241

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Length = 401

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 19/53 (35%), Positives = 21/53 (39%)

Query: 137 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
            GR  P P   P + RP         P P     PPP  AP+ R P P  KP 
Sbjct: 163 VGRRTPGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAPSRRTPRPRRKPR 215

Length = 226

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 14/73 (19%), Positives = 19/73 (26%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
             + P S            PP   A   P  P     AP  P  P P    P        
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAV 170

Query: 204 PPPPMPSGSKVPR 216
             P + +  +  +
Sbjct: 171 EAPKVEAEKEKEQ 183

Length = 256

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           +       PP     P P  PP    AP  P  P P    P  P  +   AP+       
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181

Query: 211 GSK 213
             +
Sbjct: 182 EQR 184

Length = 256

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 13/114 (11%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           V+P L    GR G  L        P          P   L P  P G   P  P  A  P
Sbjct: 312 VVPWLPDTEGREGDDLA-------PTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATP 364

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
             A  P  R    P              PA   P    +       P G  H  
Sbjct: 365 VDASLPDVRTGTAPTSLANVS----HADPAVAQPTQAAT--LAGAAPKGATHLM 412

Length = 694

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 28/142 (19%), Positives = 41/142 (28%), Gaps = 20/142 (14%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
            +   P+ P  GR+ +        K P G+      +   ++    P  P       PA 
Sbjct: 405 SEAWAPVSPVTGRLDAF-----EWKAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPAD 459

Query: 170 RPPP-APAPAPRAPPPPPKPGPPPPPP---PRGGPAP-RPPPPMPSGSKVPRPPLGQKHS 224
              P A A                P P   P   PA  +   P     + P  P      
Sbjct: 460 ELEPVAEAAETEGKGTDRSARAVKPIPVIAPAAYPASAKTAEPAGFFGRPPDDP------ 513

Query: 225 SSSVGAGAEGDANAPKTKLKPF 246
               G   +G A    T+L+ F
Sbjct: 514 ----GVRRDGAAEKRATRLRLF 531

Length = 531

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 7/109 (6%)

Query: 140 AEPLPHEP---PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
            + LP       A       + P   P   P P+  P  A          K      P  
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAA 255

Query: 197 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
               A +P P      K       Q  ++ +   G      A    + P
Sbjct: 256 NAAKAAKPEPMPDDQQK----EAEQLQAAIAQAIGGVAGKLAEGVTVTP 300

Length = 423

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
              P  P A +   AP  A  A        P          AP        G  V  P +
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPA--------AAPAAAAAEAEGHVVTSPMV 87

Query: 220 GQKHSSSSVGAGA 232
           G  + + S  A  
Sbjct: 88  GTFYRAPSPDAPP 100

Length = 155

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 31/129 (24%), Positives = 36/129 (27%), Gaps = 14/129 (10%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
           L    P P    S     P   P P +A     +P  +        P     P PA    
Sbjct: 22  LNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEK 81

Query: 173 PAPAPAP-----RAPPPPPKP------GPPPPPPPRGGPAPRPPP---PMPSGSKVPRPP 218
             PAPAP     RAP P   P       P               P      + SK P P 
Sbjct: 82  FDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPA 141

Query: 219 LGQKHSSSS 227
              +HS   
Sbjct: 142 AHTQHSPPP 150

Length = 566

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
              K PP    S     PP  P P   +P    PP +  P PP+        P      P
Sbjct: 519 NTAKTPPPPQKSP----PPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA---QIP 571

Query: 174 APAPAPRAPPPPPKPGPPPPPPP 196
           A +  P   P  P P P     P
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 168 APRPPPAPA-PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 220
                PA A PAP               P     AP PPP  P+    P    G
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 19/79 (24%), Positives = 21/79 (26%), Gaps = 9/79 (11%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P P P PPP P PP  P P      P            +      P   M    +   P 
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ-----IPEELMFDAVEADLPD 321

Query: 219 ----LGQKHSSSSVGAGAE 233
                 Q        AG E
Sbjct: 322 NILATLQTVQRRRGRAGGE 340

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 182 PPPPPKPGPPPPPPPRGGPAPRP-PPPMPSGSKVPRPPLG 220
           PP PP P P P P P   P P P P P P+   V    +G
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959

Length = 1250

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 16/70 (22%), Positives = 19/70 (27%)

Query: 138 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
            R   L  + P+S      S    P  P         P   P    P  +  P  P    
Sbjct: 207 QRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISS 266

Query: 198 GGPAPRPPPP 207
            GPA   P  
Sbjct: 267 YGPAGGGPGS 276

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	699
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	100.0
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	100.0
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	100.0
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	100.0
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	100.0
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	100.0
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	99.33
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.11
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	98.08
PHA03247	3151	large tegument protein UL36; Provisional	97.98
PHA03247	3151	large tegument protein UL36; Provisional	97.94
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.87
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	97.09
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	94.59
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	94.56
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	94.13
PHA03378	991	EBNA-3B; Provisional	92.07
PHA03378	991	EBNA-3B; Provisional	91.74
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	89.17
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	88.15
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.61
KOG4672	487	consensus Uncharacterized conserved low complexity	87.27
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	86.95
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	84.73

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=4.8e-72  Score=613.67  Aligned_cols=382  Identities=28%  Similarity=0.413  Sum_probs=338.5

Q ss_pred             CCCCCCCCCCCCCcccccccccCC-CCcccccccccCccccc--HHHHHHHhcccccccccc----ccCCCCCCCCccee
Q 005376          232 AEGDANAPKTKLKPFFWDKVLANP-DNSMVWHQIKSGSFQFN--EEMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQ  304 (699)
Q Consensus       232 ~~~~~~~Pk~klK~l~W~ki~~~~-~~~TiW~~i~~~~~~~d--~~~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~  304 (699)
                      ..++...|...||+++|.+|.+.. .++.+|-.++++.+.-|  +..|..-|+.+...+.+.    -|.+..+++.+...
T Consensus       615 kpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~  694 (1102)
T KOG1924|consen  615 KPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELR  694 (1102)
T ss_pred             CccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhe
Confidence            345667788999999999997654 57899999998877633  245667798874433321    11122456788899


Q ss_pred             ecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCC
Q 005376          305 IIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDI  382 (699)
Q Consensus       305 iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~I  382 (699)
                      |||.|.|||++|+|..|+++++||+.+|++.|  .|+...|++|++.+|..|-+.+|+++....+.|.+.|||...|..|
T Consensus       695 ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~v  774 (1102)
T KOG1924|consen  695 ILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQV  774 (1102)
T ss_pred             ecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhc
Confidence            99999999999999999999999999999987  4999999999999999999999999988889999999999999999


Q ss_pred             cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccc
Q 005376          383 PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV  462 (699)
Q Consensus       383 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~  462 (699)
                      .++.-||.+++|+.+|.+.+++|++.|..+..||++||+|+.|.+||++||.+|||||+|+...+|+||.|++|.||.||
T Consensus       775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT  854 (1102)
T KOG1924|consen  775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT  854 (1102)
T ss_pred             cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             ccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhh
Q 005376          463 KGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAA  542 (699)
Q Consensus       463 Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~  542 (699)
                      |++|+|+||||||++.+.                                    +.|++     +..|.+||++|.+|++
T Consensus       855 KsaDqk~TLLHfLae~~e------------------------------------~kypd-----~l~F~ddl~hv~kaSr  893 (1102)
T KOG1924|consen  855 KSADQKTTLLHFLAEICE------------------------------------EKYPD-----ILKFPDDLEHVEKASR  893 (1102)
T ss_pred             cccchhhHHHHHHHHHHH------------------------------------HhChh-----hhcchhhHHHHHhhcc
Confidence            999999999999997442                                    33433     4578899999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005376          543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKD  622 (699)
Q Consensus       543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~  622 (699)
                      |++|.|.+.+..++..+.+.+..+....-.-.++|.|.++|..|.+.|.+++..|..+..+|+.+|+++.+||.-|++|.
T Consensus       894 vnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kky  973 (1102)
T KOG1924|consen  894 VNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKY  973 (1102)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccC
Confidence            99999999999999999998887754333334678999999999999999999999999999999999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376          623 EGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK  654 (699)
Q Consensus       623 e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k  654 (699)
                      ..++||+.+++|-..|..|.+|+.+.|+.++|
T Consensus       974 smEEFFaDi~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen  974 SMEEFFADIRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888776654

>smart00498 FH2 Formin Homology 2 Domain

Probab=100.00  E-value=2.2e-68  Score=593.85  Aligned_cols=376  Identities=35%  Similarity=0.523  Sum_probs=335.3

Q ss_pred             CCCCCCCCCcccccccccCCCCcccccccccCcccccHHHHHHHhcccccccccccc-----CCCCCCCCcceeecChHH
Q 005376          236 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKK-----GSSLDTGPQYIQIIDQKK  310 (699)
Q Consensus       236 ~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~~d~~~lE~lF~~~~~~k~~~kk-----~~~~~~~~~~v~iLd~kr  310 (699)
                      ...|+.+||+|||+||..+.+++|||+++++.+ ++|+++||++|+++...+...+.     .....++.+.|+|||+||
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr   81 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR   81 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence            457999999999999998889999999999876 79999999999986543322111     111234567899999999


Q ss_pred             HhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccc-cccCChHHHHHHHHcCCcChHH
Q 005376          311 AQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFK  387 (699)
Q Consensus       311 aqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d-~~~L~~aE~Fl~~l~~Ip~~~~  387 (699)
                      +|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||++.+
T Consensus        82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~  161 (432)
T smart00498       82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE  161 (432)
T ss_pred             HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999988  59999999999999999999999999887 8999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCCC
Q 005376          388 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG  467 (699)
Q Consensus       388 Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~  467 (699)
                      ||+||+|+.+|++++.+|+..|.+|..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus       162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~  241 (432)
T smart00498      162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN  241 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHH
Q 005376          468 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADS  547 (699)
Q Consensus       468 k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~  547 (699)
                      ++|||||||+.|+++++                   +                      +..|.+||..|..|++++ +.
T Consensus       242 k~tLLhylv~~i~~~~p-------------------~----------------------~~~f~~el~~v~~askvs-~~  279 (432)
T smart00498      242 KTTLLHFLVKIIRKKYP-------------------D----------------------LLDFYSDLHHLDKAKVNL-EQ  279 (432)
T ss_pred             CccHHHHHHHHHHHhCh-------------------h----------------------hccchhhhccHHHHHHHH-HH
Confidence            99999999998765432                   1                      235778999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 005376          548 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRL  627 (699)
Q Consensus       548 L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~f  627 (699)
                      |..++..|.+++..++..+..-......++.|..+|..|+..|+.++..|...++++...|++++.|||++..+..+.+|
T Consensus       280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef  359 (432)
T smart00498      280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF  359 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99999999999988875443211222335899999999999999999999999999999999999999999998788999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376          628 FTIVRDFFIMLDKACKQVKDAPKKSTK  654 (699)
Q Consensus       628 F~iv~dFl~~l~ka~kEv~~~~kr~~k  654 (699)
                      |.+|.+|+..|.+|++|+.+.++.+++
T Consensus       360 F~~f~~F~~~f~ka~~en~~~~~~e~~  386 (432)
T smart00498      360 FKDFNEFLKEFSKAAEENIKKEEEEEE  386 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998766544443

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=100.00  E-value=2.2e-64  Score=552.63  Aligned_cols=365  Identities=37%  Similarity=0.559  Sum_probs=308.9

Q ss_pred             CCCCCCCCCCCcccccccccCCCCcccccccccCc--ccccHHHHHHHhccccccccccccCCCCCCCCcceeecChHHH
Q 005376          234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGS--FQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKA  311 (699)
Q Consensus       234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~--~~~d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~kra  311 (699)
                      +...+|+.+||++||++|......+|||++++...  ..+|+++||++|+.+..............++.+.++|||.||+
T Consensus         2 k~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr~   81 (370)
T PF02181_consen    2 KKKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKRS   81 (370)
T ss_dssp             ------SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHHH
T ss_pred             CCCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccccccccccccccccccchHHH
Confidence            34567999999999999998889999999998765  4688999999999875543322212234457788999999999


Q ss_pred             hhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCCcChHHHH
Q 005376          312 QNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRL  389 (699)
Q Consensus       312 qni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~Ip~~~~Rl  389 (699)
                      |||+|+|++|++++++|++||..+|.  |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|+.||++..||
T Consensus        82 ~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl  161 (370)
T PF02181_consen   82 QNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERL  161 (370)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998874  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCCCCc
Q 005376          390 EALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKT  469 (699)
Q Consensus       390 ~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~  469 (699)
                      +||+|+.+|.++++++.+.|+++..||++|++|..|++||++||++|||||+|+.||+|.||+|++|.||.+||++|+++
T Consensus       162 ~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~  241 (370)
T PF02181_consen  162 EALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKT  241 (370)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHHHH
Q 005376          470 TLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLT  549 (699)
Q Consensus       470 tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~  549 (699)
                      |||||||+.+.++.                   ++                      +..|.+||..|..|+++|++.|.
T Consensus       242 tLL~~l~~~~~~~~-------------------~~----------------------~~~~~~eL~~v~~a~~~~~~~l~  280 (370)
T PF02181_consen  242 TLLHYLVKIVEEKF-------------------PD----------------------LLDLEDELSSVEKASKVSLDELE  280 (370)
T ss_dssp             BHHHHHHHHHHTTS-------------------GG----------------------GGGHHHHTTTHHHCCTS-HHHHH
T ss_pred             hHHHHHHHHHHhcC-------------------hH----------------------HhccHHHHhhHHhhhhhhHHHHH
Confidence            99999998764321                   11                      23567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcH
Q 005376          550 GTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFT  629 (699)
Q Consensus       550 ~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~  629 (699)
                      .++.+|.+++.+++..++......+.++.|...|..|++.++.++..|.+.+.++.+.+++++.|||++..+.++.+||.
T Consensus       281 ~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~  360 (370)
T PF02181_consen  281 QDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFK  360 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            99999999999999988764444566789999999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHH
Q 005376          630 IVRDFFIMLD  639 (699)
Q Consensus       630 iv~dFl~~l~  639 (699)
                      +|.+|+.+|+
T Consensus       361 ~l~~F~~~fk  370 (370)
T PF02181_consen  361 ILSQFIDMFK  370 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999885

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=7.2e-53  Score=504.96  Aligned_cols=428  Identities=39%  Similarity=0.577  Sum_probs=369.5

Q ss_pred             CCCCCCCCcccccccccCCCCcccccccccCcccccH---HHHHHHhcccccccccc----ccCCCCCCCCcceeecChH
Q 005376          237 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNE---EMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQIIDQK  309 (699)
Q Consensus       237 ~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~~d~---~~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~iLd~k  309 (699)
                      ..|+.+||++||+++..+....++|+.+....+.+|.   +++|.+|++........    ..+.......+.+.++|.+
T Consensus       390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r  469 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR  469 (833)
T ss_pred             CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence            6789999999999999999999999999999888888   99999998764332211    1111111223678999999


Q ss_pred             HHhhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHH-HcCCcChH
Q 005376          310 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA-LVDIPFSF  386 (699)
Q Consensus       310 raqni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~-l~~Ip~~~  386 (699)
                      ++||++|+|+.|++..++++.+|+.++.  +..++|++|.++.|+.+|..+++.|.++...|+..|+|+.+ +..|+++.
T Consensus       470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~  549 (833)
T KOG1922|consen  470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE  549 (833)
T ss_pred             CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence            9999999999999999999999999876  99999999999999999999999999988899999999887 56799999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCC
Q 005376          387 KRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD  466 (699)
Q Consensus       387 ~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d  466 (699)
                      .|+++++|+..|.+++..+...+.++..||+++++++.|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus       550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~  629 (833)
T KOG1922|consen  550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD  629 (833)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHH
Q 005376          467 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDAD  546 (699)
Q Consensus       467 ~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d  546 (699)
                      +++++||+++.++++.+|.+..                         ..++.|+.+|++.|.+|..||.+|++|++||++
T Consensus       630 ~~~~~l~~~~~e~~~~~~~r~~-------------------------~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~  684 (833)
T KOG1922|consen  630 GKTTLLHFVVPEVVRSEGKRSV-------------------------IDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE  684 (833)
T ss_pred             ccchhhhhhHHHHHHhhccccc-------------------------hhhhhhhhccchhhhcccchhcccchhhccCHH
Confidence            9999999999999998775432                         145688999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-hhccc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-ccc
Q 005376          547 SLTGTVSKLGHALLKTRDFLN-TDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KDE  623 (699)
Q Consensus       547 ~L~~~v~~L~~~l~~~~~~l~-~~~~~-~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~-k~e  623 (699)
                      .+..++.+|.+++.++++.++ ..... ...++.|..+|..|+..|+.++..+..++++++..++.+++|||++++ +..
T Consensus       685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~  764 (833)
T KOG1922|consen  685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT  764 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence            999999999999999999986 33322 345789999999999999999999999999999999999999999995 556


Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCCCCCCchhhhccchhhhhccCCCCCCC
Q 005376          624 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSD  696 (699)
Q Consensus       624 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~kke~~~~~s~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~  696 (699)
                      .+++|.++++|+.+++++|+|++.+++++...   +    .........-..+.+..++.+..+|..++.++.
T Consensus       765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (833)
T KOG1922|consen  765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY---E----AEEKRANKEAELEELKNISQAVSKRTSDSESSL  830 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c----ccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999887432   1    001111112234445566666666666555544

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=2.3e-52  Score=462.30  Aligned_cols=371  Identities=23%  Similarity=0.311  Sum_probs=323.8

Q ss_pred             CCCCCCCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhccccccccc----cccCCCCCCCCcc
Q 005376          229 GAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE----KKKGSSLDTGPQY  302 (699)
Q Consensus       229 ~~g~~~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~~----~kk~~~~~~~~~~  302 (699)
                      .+.+-+.....|.++-.++|..+..+.+++|+|+.+++..+  ++|++++|+.|.....+...    ..+.....+..+.
T Consensus       357 ~a~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk  436 (830)
T KOG1923|consen  357 FAATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQK  436 (830)
T ss_pred             HHHhhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhh
Confidence            33445555667888889999999999999999999887765  47999999999873222211    1111122345678


Q ss_pred             eeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhcc---ccccCChHHHHHH
Q 005376          303 IQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNG---ELSQLGPAERFLK  377 (699)
Q Consensus       303 v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~---d~~~L~~aE~Fl~  377 (699)
                      ++++|.+|++|++|.++ +++..++||.||...|  .|..+.++.|.+++||++|.+.+++|..   ....|++.++|+.
T Consensus       437 ~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml  515 (830)
T KOG1923|consen  437 RTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFML  515 (830)
T ss_pred             hhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhh
Confidence            99999999999999999 9999999999998776  6999999999999999999999998864   4578999999999


Q ss_pred             HHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccc
Q 005376          378 ALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLL  457 (699)
Q Consensus       378 ~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~  457 (699)
                      .+..|.++++|+..|-|+.+|.+.+.-+.+++..+..|++.+++|++|+.+|++||++|||||.+. ||.++||+|.+|.
T Consensus       516 ~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD  594 (830)
T KOG1923|consen  516 SLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLD  594 (830)
T ss_pred             hhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccH
Confidence            999999999999999999999999999999999999999999999999999999999999999986 8999999999999


Q ss_pred             cccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHH
Q 005376          458 KLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENV  537 (699)
Q Consensus       458 KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V  537 (699)
                      -|.++|++|.+.|||||++..+..                                    .|..     +..|.+||..|
T Consensus       595 ~ll~tkStDr~~tLlh~iv~~i~e------------------------------------klp~-----l~~F~~el~~~  633 (830)
T KOG1923|consen  595 SLLDTKSTDRSMTLLHYIVLTIAE------------------------------------KLPA-----LQLFFSELDFV  633 (830)
T ss_pred             HHhhccCCccceeeeehhhHHHHH------------------------------------hhHH-----HHhhHHHhhcc
Confidence            999999999999999999976532                                    2222     34688999999


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 005376          538 KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHG  617 (699)
Q Consensus       538 ~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFge  617 (699)
                      .||+.++++++..+|.+|.+++..++++.+...      .  ...|+.|+.+++..+.+|+++.+.+...|+.++.|||+
T Consensus       634 eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~------~--~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Ge  705 (830)
T KOG1923|consen  634 EKATAVQLESVLADVKELNAGMTLAEKETEREG------L--DVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGE  705 (830)
T ss_pred             chhhhhhhhccchhHHHHHhHHHHHHHHHhhhc------c--chHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCC
Confidence            999999999999999999999999887765421      1  16999999999999999999999999999999999999


Q ss_pred             CCCccchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376          618 NAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPK  650 (699)
Q Consensus       618 d~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~k  650 (699)
                      +.+...+.-||..|..|+.+|.++..|++...+
T Consensus       706 spk~tppt~ff~~f~~F~~~~k~~~~ene~k~~  738 (830)
T KOG1923|consen  706 SPKTTPPTVFFQLFVRFVRAYKMARQENEQKKK  738 (830)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhh
Confidence            998888999999999999999999988865544

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=8.5e-45  Score=383.75  Aligned_cols=366  Identities=23%  Similarity=0.315  Sum_probs=308.5

Q ss_pred             CCCCCCCCcccccccccC--------CCCcccccccccCcccccHHHHHHHhccccccccccccCCCCCCCCcceeecCh
Q 005376          237 NAPKTKLKPFFWDKVLAN--------PDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQ  308 (699)
Q Consensus       237 ~~Pk~klK~l~W~ki~~~--------~~~~TiW~~i~~~~~~~d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~  308 (699)
                      ...+.++-.|||..+.-.        ...+|+|+.++..  .+|...|+.||..+.......||.  .+.+.+..+|||.
T Consensus       278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~--~~D~~r~~~LFEsr~~~~~P~KK~--~E~r~~~~tVL~~  353 (817)
T KOG1925|consen  278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPV--SVDTARLEHLFESRAKEVLPSKKA--GEGRRTMTTVLDP  353 (817)
T ss_pred             ccccCceeEEEeecceecCCCCCccccccchhhhccCcc--eecHHHHHHHHHHhhhhhccchhh--cccceeeeeecCc
Confidence            345677889999887532        2468999999764  389999999998764332222332  2345678999999


Q ss_pred             HHHhhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhh--ccccccCChHHHHHHHHcCCcC
Q 005376          309 KKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLF--NGELSQLGPAERFLKALVDIPF  384 (699)
Q Consensus       309 kraqni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~--~~d~~~L~~aE~Fl~~l~~Ip~  384 (699)
                      ||+|.|+|.|.+|. +..-|..||++.|+  ++.|.|+.|++|.||++|+++|...  .+..-.||.+|||++.|+.|+.
T Consensus       354 KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~  432 (817)
T KOG1925|consen  354 KRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGG  432 (817)
T ss_pred             ccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHH
Confidence            99999999999986 45667789998875  7899999999999999999998654  3334689999999999999999


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccccc
Q 005376          385 SFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG  464 (699)
Q Consensus       385 ~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks  464 (699)
                      +..||+.|.|+..|+..-.+|.+.|-.+..+++++.+++.|+-+|..+|+||||||+..    ++||.|+.|.|..++|+
T Consensus       433 L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT~----~KgFeLsYLeKvsEVKD  508 (817)
T KOG1925|consen  433 LAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGTQ----SKGFELSYLEKVSEVKD  508 (817)
T ss_pred             HHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCcc----ccceehHhhhhchhhcc
Confidence            99999999999999999999999999999999999999999999999999999999875    79999999999999999


Q ss_pred             CCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhc
Q 005376          465 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID  544 (699)
Q Consensus       465 ~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd  544 (699)
                      +..|.||||+||..++++              |+               ++            +.|.+|+..|.+.|+||
T Consensus       509 tV~KqsLlhHlc~~vVE~--------------Fp---------------es------------sDLYSEiGA~tRSAkVD  547 (817)
T KOG1925|consen  509 TVRKQSLLHHLCSLVVET--------------FP---------------ES------------SDLYSEIGALTRSAKVD  547 (817)
T ss_pred             hHHHHHHHHHHHHHHHHh--------------CC---------------cc------------hhHHHHhHhhhhhhhcc
Confidence            999999999999887643              22               11            34668899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---c
Q 005376          545 ADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG---K  621 (699)
Q Consensus       545 ~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~---k  621 (699)
                      ++.|...+..|+++++..++.|.. +...+-.-.....|..|++++.++|..|+..+.++.+.|.+.+.|||....   .
T Consensus       548 f~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIre  626 (817)
T KOG1925|consen  548 FEQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIRE  626 (817)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Confidence            999999999999999999988753 332222345788999999999999999999999999999999999987553   2


Q ss_pred             cchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376          622 DEGLRLFTIVRDFFIMLDKACKQVKDAPKKST  653 (699)
Q Consensus       622 ~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~  653 (699)
                      .....||.+|++|.-.|...+..|-+.++|.+
T Consensus       627 v~iN~fc~~~~EFaLEYRTTRervLQQ~qk~A  658 (817)
T KOG1925|consen  627 VRINQFCHTLREFALEYRTTRERVLQQQQKQA  658 (817)
T ss_pred             cCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34689999999999999999888877766554

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=99.33  E-value=5.5e-11  Score=128.45  Aligned_cols=31  Identities=23%  Similarity=0.099  Sum_probs=29.7

Q ss_pred             CCcccccccCCCCCCCcCCCCCCCCCCCCCC
Q 005376           79 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN  109 (699)
Q Consensus        79 ~~k~~k~g~~~~~~~~~~~~~~~~~~~~~~~  109 (699)
                      |+|++|.+|+++++|+|++||||+.+.||+.
T Consensus       228 ksk~tk~disaPtnf~h~~hVgwd~~~gf~~  258 (569)
T KOG3671|consen  228 KSKITKADISAPTNFPHIPHVGWDEQVGFDS  258 (569)
T ss_pred             ccccccccCCCCCCCccccccCCCcCCCccc
Confidence            5699999999999999999999999999997

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=2.2e-08  Score=113.09  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=22.0

Q ss_pred             HHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccccc
Q 005376          416 CKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG  464 (699)
Q Consensus       416 ~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks  464 (699)
                      .+.|.+.+.|..+|.-|-.+-=       |=.+.=|||..=..+.++|-
T Consensus       758 ye~l~e~EQF~vvm~~vkrL~p-------RL~~ilFKl~fse~vnniKP  799 (1102)
T KOG1924|consen  758 YEDLPEPEQFVVVMSQVKRLRP-------RLSAILFKLTFSEQVNNIKP  799 (1102)
T ss_pred             ccCCCCHHHHhHHHhhccccCh-------hHHHHHHHhhHHHHHhhcCh
Confidence            3445555555555444432222       33455577766666666654

>smart00498 FH2 Formin Homology 2 Domain

Probab=98.08  E-value=1.4e-05  Score=90.05  Aligned_cols=123  Identities=29%  Similarity=0.350  Sum_probs=95.8

Q ss_pred             hhhhcchhhhHHHH----HHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC---cchhhHHHHHHHHHHHHHHH
Q 005376          524 LQAVSHLSSELENV----KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN---SGFHETLKSFVQNAEGDIMW  596 (699)
Q Consensus       524 l~~v~~l~~eL~~V----~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~---~~F~~~m~~Fl~~Ae~~i~~  596 (699)
                      ++.+.+..+++.++    ..++..+++.|...+.++...+.++...+..+.+....+   ..|.+-|..|...+++.+..
T Consensus       301 l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~  380 (432)
T smart00498      301 LSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKK  380 (432)
T ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455555    888999999999999999999999998887665542212   24556666666777778888


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCCc--cchhhhcHHHHHHHHHHHHHHHHHH
Q 005376          597 LLEEEKRIMSLVKSTGDYFHGNAGK--DEGLRLFTIVRDFFIMLDKACKQVK  646 (699)
Q Consensus       597 L~e~~~~~~~~~k~l~~YFged~~k--~e~~~fF~iv~dFl~~l~ka~kEv~  646 (699)
                      +.++.++.+.+++++++||++...+  ..+.++|.+++||+.++|++|++++
T Consensus       381 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~  432 (432)
T smart00498      381 EEEEEERRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG  432 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence            8888899999999999999986643  4578999999999999999999873

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PHA03247 large tegument protein UL36; Provisional

Probab=97.98  E-value=0.0003  Score=89.31  Aligned_cols=8  Identities=13%  Similarity=0.472  Sum_probs=3.8

Q ss_pred             Cccccccc
Q 005376          257 NSMVWHQI  264 (699)
Q Consensus       257 ~~TiW~~i  264 (699)
                      ..|.|-..
T Consensus      3025 ~q~~~~~~ 3032 (3151)
T PHA03247       3025 KQTLWPPD 3032 (3151)
T ss_pred             ccCCCCCC
Confidence            45555443

>PHA03247 large tegument protein UL36; Provisional

Probab=97.94  E-value=0.00042  Score=88.03  Aligned_cols=17  Identities=24%  Similarity=0.583  Sum_probs=9.0

Q ss_pred             CCCCCCCCCCccccccc
Q 005376          235 DANAPKTKLKPFFWDKV  251 (699)
Q Consensus       235 ~~~~Pk~klK~l~W~ki  251 (699)
                      +...+..-+|.--|-..
T Consensus      3016 ~~~~~~~sl~q~~~~~~ 3032 (3151)
T PHA03247       3016 ETDPPPVSLKQTLWPPD 3032 (3151)
T ss_pred             cCCCCCCCcccCCCCCC
Confidence            33445566666555444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.87  E-value=0.00051  Score=75.53  Aligned_cols=10  Identities=20%  Similarity=0.325  Sum_probs=4.5

Q ss_pred             Cccccccccc
Q 005376          257 NSMVWHQIKS  266 (699)
Q Consensus       257 ~~TiW~~i~~  266 (699)
                      ++-+-++|..
T Consensus       495 R~~LmaqIRq  504 (569)
T KOG3671|consen  495 RDALMAQIRQ  504 (569)
T ss_pred             HHHHHHHHHh
Confidence            3344445543

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=97.09  E-value=0.02  Score=62.08  Aligned_cols=16  Identities=13%  Similarity=-0.232  Sum_probs=9.0

Q ss_pred             ccccccchhhHhhhhh
Q 005376           20 QGRTSTSYCLVALLKY   35 (699)
Q Consensus        20 ~~~~~~~~~~~~~~~~   35 (699)
                      -+-+.-.||.-+..-+
T Consensus       230 v~~~~p~~~~~~~dgs  245 (518)
T KOG1830|consen  230 VFSTRPEYQSEQADGS  245 (518)
T ss_pred             cccCCccccccccccc
Confidence            3444556776666654

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=94.59  E-value=0.13  Score=59.93  Aligned_cols=31  Identities=26%  Similarity=0.191  Sum_probs=22.1

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHhcccccCCCC
Q 005376          414 VACKELRNSRLFLKLLEAVLKTGNRMNDGTF  444 (699)
Q Consensus       414 ~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~  444 (699)
                      ...++.+.-+...+++-.+..++|.=-.|..
T Consensus       555 ~s~k~sr~lr~VleiILA~gNymns~kRg~a  585 (830)
T KOG1923|consen  555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAA  585 (830)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence            3445566667777778888889988777653

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=94.56  E-value=2.2  Score=46.86  Aligned_cols=9  Identities=22%  Similarity=0.360  Sum_probs=4.7

Q ss_pred             hHHHHHHhc
Q 005376          313 NLSIMLRAL  321 (699)
Q Consensus       313 ni~I~L~~l  321 (699)
                      +..|+.++.
T Consensus       489 vatiLsRRi  497 (518)
T KOG1830|consen  489 VATILSRRI  497 (518)
T ss_pred             HHHHHHHHH
Confidence            445555554

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=94.13  E-value=0.032  Score=41.77  Aligned_cols=23  Identities=13%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             ccCCCCCCCcCCCCCCCCCCCCCC
Q 005376           86 DIGKFDGTASFGAVGGTAKSFNEN  109 (699)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~~~~~  109 (699)
                      +|+.|.+|+|+.|+||+.. |++.
T Consensus         2 ~IS~Ptnf~H~~HvG~d~~-g~~~   24 (42)
T cd00132           2 EISTPTDFKHISHVGWDGV-GFDG   24 (42)
T ss_pred             cccCCCCcCcccccCCCCC-Cccc
Confidence            6889999999999999998 7764

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>PHA03378 EBNA-3B; Provisional

Probab=92.07  E-value=3.8  Score=47.56  Aligned_cols=8  Identities=13%  Similarity=0.194  Sum_probs=3.4

Q ss_pred             CCCCCCCC
Q 005376           96 FGAVGGTA  103 (699)
Q Consensus        96 ~~~~~~~~  103 (699)
                      .||+...+
T Consensus       669 ~~hi~~~p  676 (991)
T PHA03378        669 IGHIPYQP  676 (991)
T ss_pred             cCCcCCCC
Confidence            34444443

>PHA03378 EBNA-3B; Provisional

Probab=91.74  E-value=4.7  Score=46.82  Aligned_cols=9  Identities=0%  Similarity=0.050  Sum_probs=4.6

Q ss_pred             CCCCCCCCC
Q 005376           98 AVGGTAKSF  106 (699)
Q Consensus        98 ~~~~~~~~~  106 (699)
                      -.+|.+...
T Consensus       686 ~~~~ap~~~  694 (991)
T PHA03378        686 PIQWAPGTM  694 (991)
T ss_pred             ccccCcccc
Confidence            456665433

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=89.17  E-value=65  Score=39.70  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHhcccccC
Q 005376          414 VACKELRNSRLFLKLLEAVLKTGNRMND  441 (699)
Q Consensus       414 ~A~~~l~~S~~~~~lL~~vL~~GN~lN~  441 (699)
                      .+....+....+..+.+++...|++++.
T Consensus       625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~  652 (833)
T KOG1922|consen  625 VKSSDGKTTLLHFVVPEVVRSEGKRSVI  652 (833)
T ss_pred             hhcccccchhhhhhHHHHHHhhccccch
Confidence            3333344466677788888888988876

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=88.15  E-value=0.055  Score=43.64  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=18.0

Q ss_pred             ccCCCCCCCcCCCCCCCCCCCCC
Q 005376           86 DIGKFDGTASFGAVGGTAKSFNE  108 (699)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~~~~  108 (699)
                      +|+.|.+|+|+.||||+.++++.
T Consensus         1 ~Is~P~nf~H~~HVg~d~~~g~~   23 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGWDPNTGGF   23 (59)
T ss_dssp             TB---EEEEEEEEEEEETTTTEE
T ss_pred             CCCCCCCCcceeeeccCCCcccc
Confidence            57889999999999999988864

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.61  E-value=18  Score=44.84  Aligned_cols=19  Identities=5%  Similarity=0.034  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhcccccCCCC
Q 005376          426 LKLLEAVLKTGNRMNDGTF  444 (699)
Q Consensus       426 ~~lL~~vL~~GN~lN~gt~  444 (699)
                      +++=++|-.++|||+..+.
T Consensus      1471 ~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred             HHHHHHHHHHHHHhcCCCC
Confidence            3444567788999998763

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=87.27  E-value=4.8  Score=44.20  Aligned_cols=11  Identities=27%  Similarity=0.552  Sum_probs=5.8

Q ss_pred             CCHHHHHHHhh
Q 005376          323 VTLEEVCDALL  333 (699)
Q Consensus       323 ~s~~ei~~al~  333 (699)
                      ++.++...+++
T Consensus       470 vtkDDaY~~FM  480 (487)
T KOG4672|consen  470 VTKDDAYNAFM  480 (487)
T ss_pred             CcchHHHHHHH
Confidence            35555555554

>smart00285 PBD P21-Rho-binding domain

Probab=86.95  E-value=0.27  Score=35.59  Aligned_cols=17  Identities=18%  Similarity=0.081  Sum_probs=15.6

Q ss_pred             cCCCCCCCcCCCCCCCC
Q 005376           87 IGKFDGTASFGAVGGTA  103 (699)
Q Consensus        87 ~~~~~~~~~~~~~~~~~  103 (699)
                      |+.|.+|+|+.|||||.
T Consensus         1 IS~P~nf~H~~HVg~d~   17 (36)
T smart00285        1 ISTPTDFKHIAHVGFDG   17 (36)
T ss_pred             CCCCCCCcEEEEeeECC
Confidence            56799999999999998

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=84.73  E-value=44  Score=36.22  Aligned_cols=14  Identities=14%  Similarity=0.271  Sum_probs=8.4

Q ss_pred             cccHHHHHHHhccc
Q 005376          270 QFNEEMIETLFGYS  283 (699)
Q Consensus       270 ~~d~~~lE~lF~~~  283 (699)
                      -+-+.+||++...+
T Consensus       356 plSeAEFEdiM~RN  369 (498)
T KOG4849|consen  356 PLSEAEFEDIMTRN  369 (498)
T ss_pred             cchHHHHHHHHhhc
Confidence            35556777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	699
3o4x_E	467	Crystal Structure Of Complex Between Amino And Carb		7e-24
3obv_E	457	Autoinhibited Formin Mdia1 Structure Length = 457		2e-23
1v9d_A	340	Crystal Structure Of The Core Fh2 Domain Of Mouse M		2e-23
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		4e-19
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		5e-19
4eah_A	402	Crystal Structure Of The Formin Homology 2 Domain O		5e-15

>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 147/344 (42%), Gaps = 51/344 (14%)
Query: 307 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 364
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 365 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 424
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 425 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 484
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 274
Query: 485 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 544
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 275 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 301
Query: 545 ADSLTGTVSKLGHALLKTRDFLNTDMKNL----GENSGFHETLKSFVQNAEGDIMWLLEE 600
           A++L  ++ ++   +      +  D++N      E   F E + SFV++A+     L   
Sbjct: 302 AENLQKSLDQMKKQIAD----VERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMM 357
Query: 601 EKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 644
              + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 358 HSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 401

>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 147/344 (42%), Gaps = 51/344 (14%)
Query: 307 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 364
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 84  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 365 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 424
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 425 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 484
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 255
Query: 485 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 544
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 256 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 282
Query: 545 ADSLTGTVSKLGHALLKTRDFLNTDMKNL----GENSGFHETLKSFVQNAEGDIMWLLEE 600
           A++L  ++ ++   +      +  D++N      E   F E + SFV++A+     L   
Sbjct: 283 AENLQKSLDQMKKQIAD----VERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMM 338
Query: 601 EKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 644
              + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 339 HSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 382

>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 147/345 (42%), Gaps = 53/345 (15%)
Query: 307 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 364
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 13  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 365 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 424
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 73  EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 425 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 484
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 184
Query: 485 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 544
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 185 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 211
Query: 545 ADSLTGTVSKLGHALLKT-RDFLN----TDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599
           A++L  ++ ++   +    RD  N    TD     E   F E + SFV++A+     L  
Sbjct: 212 AENLQKSLDQMKKQIADVERDVQNFPAATD-----EKDKFVEKMTSFVKDAQEQYNKLRM 266
Query: 600 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 644
               + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 267 MHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 311

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 20/257 (7%)
Query: 239 PKTKLKPFFWDKVLANPDNSMVWHQIK-SGSFQ-FNEEMIETLFG--------YXXXXXX 288
           P   LK F W K+  N     VW +I  +  F+  + E +E  F         +      
Sbjct: 11  PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSK 70
Query: 289 XXXXXXXLDT-----GPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALL---EGNELPA 340
                   DT       + + +ID ++AQN +I+L  L ++ +E+  A+L   E  +LP 
Sbjct: 71  QKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPK 130
Query: 341 ELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQE 400
           ++++ LLK  P   +   L     EL ++  A+RFL  +  I    +RL++L F     E
Sbjct: 131 DMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAE 190
Query: 401 EVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS 460
            V+  K   E +    +E+  S    +LLE VL  GN MN G  RG A  FK+ +L K++
Sbjct: 191 RVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIA 249
Query: 461 DVK-GVDGKTTLLHFVV 476
           D K  +D   TLLH+++
Sbjct: 250 DTKSSIDKNITLLHYLI 266

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 303 IQIIDQKKAQNLSIMLRALNVTLEEVCDALL---EGNELPAELIQTLLKMAPTAEEELKL 359
           + +ID ++AQN +I+L  L ++ +E+  A+L   E  +LP ++++ LLK  P   +   L
Sbjct: 92  LSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLL 151
Query: 360 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419
                EL ++  A+RFL  +  I    +RL++L F     E V+  K   E +    +E+
Sbjct: 152 EEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEV 211
Query: 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVK-GVDGKTTLLHFVV 476
             S    +LLE VL  GN MN G  RG A  FK+ +L K++D K  +D   TLLH+++
Sbjct: 212 FRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHYLI 268

>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 303 IQIIDQKKAQNLSIMLRALNVTLEEVCDAL--LEGNELPAELIQTLLKMAPTAEEELKLR 360
           + +++  +A+NL+I LR    + EE+C A+   +   LP + ++ L++  PT  E   LR
Sbjct: 84  VTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLR 143
Query: 361 LFNGE---LSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 417
            +  E   L +L   +RF+     +    +R+  + F+   Q+ +         +  A  
Sbjct: 144 QYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASA 203
Query: 418 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFV 475
            +++S+   ++LE +L  GN MN    RG    FKL +L  L D K  D K TLLHF+
Sbjct: 204 SVKSSQKLKQMLEIILALGNYMNSSK-RGAVYGFKLQSLDLLLDTKSTDRKMTLLHFI 260

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	699
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-114
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	1e-107
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	1e-103
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	1e-83
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-16
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-16
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-12
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-10
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-11
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-10
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-08
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	7e-10
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-07
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	5e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	9e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-09
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	8e-09
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	7e-08
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-07
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-09
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-08
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-08
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	9e-07
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	5e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	4e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-06
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	9e-08
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-07
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	4e-06
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	3e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	6e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	9e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	1e-06
3a58_A	320	Exocyst complex component SEC3; protein complex, P	7e-06
3a58_A	320	Exocyst complex component SEC3; protein complex, P	5e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	3e-07
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-06
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	5e-06
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	4e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	9e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	1e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	4e-06
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	2e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	2e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	7e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	4e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	5e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-06
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	3e-05
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
3oti_A	398	CALG3; calicheamicin, TDP, structural genomics, PS	1e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	4e-05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	8e-05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	2e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	3e-04
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	4e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	6e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
2yjn_A	441	ERYCIII, glycosyltransferase; transferase, cytochr	6e-05
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	8e-05
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	1e-04
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	2e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	2e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	8e-04
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	3e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-04
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	3e-04
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	6e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-04
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	5e-04
3aqq_A	147	Calcium-regulated heat stable protein 1; compact b	7e-04
3m1c_B	204	GL, envelope glycoprotein L; glycoprotein H, GH/GL	7e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	8e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-04

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  349 bits (898), Expect = e-114
 Identities = 108/448 (24%), Positives = 179/448 (39%), Gaps = 53/448 (11%)

Query: 239 PKTKLKPFFWDKVLAN-PDNSMVWHQIKSGSFQFNEEM--IETLFGYSEKSKNEKKKGSS 295
           P+ +L+   W K +A        W ++K   F+ NE    +   F    K+   KK    
Sbjct: 6   PEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEG 65

Query: 296 LDTG-------PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 346
            +          + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L
Sbjct: 66  GEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNL 125

Query: 347 LKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATK 406
           +K  P  E+   L     E   L  +E+F   +  +P    RL A+LF     E+V   K
Sbjct: 126 IKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIK 185

Query: 407 ESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 466
                +  AC+ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D
Sbjct: 186 PEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD 245

Query: 467 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQA 526
            K TLLHF+ +                                      +  +  +    
Sbjct: 246 QKMTLLHFLAELC------------------------------------ENDHPEV---- 265

Query: 527 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSF 586
                 EL +V+KA+ + A++L  ++ ++   +      +        E   F E + SF
Sbjct: 266 -LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSF 324

Query: 587 VQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVK 646
           V++A+     L      + +L K  GDYF  +  K      F  + +F  M  +A K+ +
Sbjct: 325 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ 384

Query: 647 DAPKKSTKSLKKEGSTASSSSDTPQQPS 674
              +   K  + + +   +  +  ++  
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQ 412

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  333 bits (855), Expect = e-107
 Identities = 101/441 (22%), Positives = 174/441 (39%), Gaps = 62/441 (14%)

Query: 239 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSK------NEK 290
           P   LK F W K+  N     VW +I         + E +E  F   ++ +      N K
Sbjct: 11  PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSK 70

Query: 291 KKGSSLDTG-------PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE---LPA 340
           +K +             + + +ID ++AQN +I+L  L ++ +E+  A+L  +E   LP 
Sbjct: 71  QKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPK 130

Query: 341 ELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQE 400
           ++++ LLK  P   +   L     EL ++  A+RFL  +  I    +RL++L F     E
Sbjct: 131 DMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAE 190

Query: 401 EVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS 460
            V+  K   E +    +E+  S    +LLE VL  GN MN G  RG A  FK+ +L K++
Sbjct: 191 RVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIA 249

Query: 461 DVKG-VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHY 519
           D K  +D   TLLH+++  +                                        
Sbjct: 250 DTKSSIDKNITLLHYLITIVENKY------------------------------------ 273

Query: 520 RNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGE-NSG 578
                 +V +L+ EL ++ +AA ++   L   +S L   L      L        +    
Sbjct: 274 -----PSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDK 328

Query: 579 FHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIML 638
           F   +  F+  A      + +       L      +F   AGK +    F I   F   +
Sbjct: 329 FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388

Query: 639 DKACKQVKDAPKKSTKSLKKE 659
            +A ++ ++  KK  +  ++ 
Sbjct: 389 SEAKQENENMRKKKEEEERRA 409

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  317 bits (815), Expect = e-103
 Identities = 95/375 (25%), Positives = 153/375 (40%), Gaps = 43/375 (11%)

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEEL 357
            + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+  
Sbjct: 6   VKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLK 65

Query: 358 KLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 417
            L     E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+
Sbjct: 66  MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 125

Query: 418 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQ 477
           ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ +
Sbjct: 126 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185

Query: 478 EIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENV 537
                                                            V     EL +V
Sbjct: 186 LCENDH-----------------------------------------PEVLKFPDELAHV 204

Query: 538 KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWL 597
           +KA+ + A++L  ++ ++   +      +        E   F E + SFV++A+     L
Sbjct: 205 EKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKL 264

Query: 598 LEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLK 657
                 + +L K  GDYF  +  K      F  + +F  M  +A K+ +   +   K  +
Sbjct: 265 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRR 324

Query: 658 KEGSTASSSSDTPQQ 672
            + +   +  +  ++
Sbjct: 325 AKLAKEKAEKERLEK 339

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  269 bits (689), Expect = 1e-83
 Identities = 73/449 (16%), Positives = 140/449 (31%), Gaps = 85/449 (18%)

Query: 239 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKK 292
           P  KLK   W+K+  +  ++ +W   K+  F      +     +E  F   E      K+
Sbjct: 5   PHKKLKQLHWEKL--DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 293 GSSLDTGPQYIQIIDQKKAQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAELIQTLL-- 347
                   Q I  + +  +Q   I L    ++++ ++   +L  +   L    +   L  
Sbjct: 63  KED----LQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSK 118

Query: 348 ------------KMAPTAEEELKLRLFN------GELSQLGPAERFLKALV--DIPFSFK 387
                         AP + +   +R          + + L  A++    L+     +   
Sbjct: 119 SEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGS 178

Query: 388 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGG 447
           R+ AL  + + + E +        ++ A   L+ S     +   +L  GN MND +    
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--KQ 236

Query: 448 AQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLE 507
           AQ FKL TL +L+ +K      T L++V + +                            
Sbjct: 237 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIV---------------------------- 268

Query: 508 ETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 567
                     +Y +      +   SELE V     +  + L         +++     + 
Sbjct: 269 --------RLNYPSF-----NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVE 315

Query: 568 T----DMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 623
                D                 +  A      L +E K  +   +S    +  ++G   
Sbjct: 316 IGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKF 375

Query: 624 GL-RLFTIVRDFFIMLDKACKQVKDAPKK 651
                F    DF     KA  Q   A ++
Sbjct: 376 AKISFFKKFADFINEYKKAQAQNLAAEEE 404

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 31/128 (24%), Positives = 36/128 (28%)

Query: 94  ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 153
            S    G   K        L      PG   +  +G+P   P P     L         P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
                 P       A       + A      PP  G PPPP  RG P P    P P    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 214 VPRPPLGQ 221
              PP+G 
Sbjct: 198 PMGPPMGI 205

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 76.6 bits (188), Expect = 7e-16
 Identities = 30/101 (29%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
           P  G  G + Q M P       A         +  P         PPPP     PP    
Sbjct: 130 PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
            P     PP   P   PP RG P   PPP M      P PP
Sbjct: 190 GPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR-----PPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 22/86 (25%), Positives = 24/86 (27%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P  +       +         P           PP      PP    PPP   P   PP 
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGG 199
              P    P   P PG  PPPP   G
Sbjct: 204 GIPPGRGTPMGMPPPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 4/100 (4%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPP---PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 192
           PP +   +   P A     P  G       P   P P+ P   A   R    P       
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS-QQVMT 143

Query: 193 PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 232
           P       A              + P G+      +G GA
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 74.9 bits (183), Expect = 4e-14
 Identities = 13/117 (11%), Positives = 22/117 (18%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
           GQ   PL+ P   +         +        P    P    +                 
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 226
                       P   P     P  P + G   +      +     +P      +  
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 74.9 bits (183), Expect = 5e-14
 Identities = 23/121 (19%), Positives = 31/121 (25%)

Query: 98  AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 157
             G  A    +  Q +PP  P    +     GMPP    P   +     P          
Sbjct: 15  QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID 74

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
                         P     A   P  P + G P     +   AP    P  +  +  RP
Sbjct: 75  QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134

Query: 218 P 218
            
Sbjct: 135 M 135

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 73.7 bits (180), Expect = 1e-13
 Identities = 20/119 (16%), Positives = 28/119 (23%), Gaps = 3/119 (2%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           +V P  +   G+  + LQ      PP     P            PP G  P         
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQD---PAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVG 229
           P                        P   P     P +P     P     Q  ++ + G
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 13/137 (9%), Positives = 26/137 (18%)

Query: 128 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 187
           +  P  +   G+      +P   + P  P+           P     P+   +    P +
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 188 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFF 247
                                            Q           +    A     +P  
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 248 WDKVLANPDNSMVWHQI 264
                  P N +    +
Sbjct: 127 AMGQNMRPMNQLYPIDL 143

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 14/102 (13%), Positives = 20/102 (19%)

Query: 109 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 168
            G     +  PP     ++     L P   +      +   S+        P   P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
               P     P      P   P    P         P     
Sbjct: 98  QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 18/125 (14%), Positives = 24/125 (19%), Gaps = 1/125 (0%)

Query: 95  SFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH 154
              A      +     Q         G++G   QG  P         P   +    +   
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 155 PPSGPPPPPPPPPAPRPPPAPAP-APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
             S         P   P     P  P     P +    P   P  G              
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 214 VPRPP 218
              P 
Sbjct: 137 QLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 16/117 (13%), Positives = 21/117 (17%), Gaps = 3/117 (2%)

Query: 105 SFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPP 164
             N      P    PP    +       +  PP  A P   +                  
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
                       P      P     P  P         +  P        P   +GQ
Sbjct: 77  TTSMNDMHLHNVP---LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 11/105 (10%), Positives = 19/105 (18%), Gaps = 1/105 (0%)

Query: 136 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPGPPPPP 194
              R  P                    PP  PA           P     P         
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
           P +     +      S + +    +     ++ +          P
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 10/112 (8%), Positives = 15/112 (13%), Gaps = 3/112 (2%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP---PPAPAPAPRAPPPPPK 187
              +  P              +P     P  P     +      PP  A           
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 188 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
           P                         +  P    +                P
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 15/86 (17%), Positives = 19/86 (22%), Gaps = 2/86 (2%)

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
           H      P           P   PA   PP  P            G  P+   P     +
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM--GMPPQGAVPSMGQQQ 60

Query: 214 VPRPPLGQKHSSSSVGAGAEGDANAP 239
              P   Q H        +  D +  
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLH 86

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 26/116 (22%), Gaps = 2/116 (1%)

Query: 110 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 169
            Q+   +      +        PL  P    +P    P     P      P   P    P
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV--PVQMGTPLQQQQQPMAAPAYGQP 124

Query: 170 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
                    P     P       PPP      P PP  +P    +    L      
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 180

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 19/109 (17%), Positives = 26/109 (23%), Gaps = 3/109 (2%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
                        +     +  P         +  A+L P      P PPPPP      P
Sbjct: 5   HHHHHHSS---GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
                  +       GP  P      PA R        +    PP   +
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 65.2 bits (158), Expect = 3e-11
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 2/117 (1%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP- 172
             + P      +    +  L PP    +P P  PPA    +PP             R P 
Sbjct: 20  HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPT 79

Query: 173 -PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 228
            P       A     +PGP  P           P         P P   ++ S    
Sbjct: 80  GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 64.8 bits (157), Expect = 4e-11
 Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
                        P  S    P +          A   PP   P P APPPPP P    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGNP 61

Query: 194 PPPRGGPA-PRPPPPMPSGSKVPRPPLGQKHSSSS 227
           P    G +  +     P+G          ++    
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQP 96

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP-PKPGPPPPPPPRGGPAP 202
            H    S    P         P  +     +   A   PP   P P PPPPP P  G  P
Sbjct: 5   HHHHHHSSGLVPR--GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 203 RPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
                     ++ R P G   +S +   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAV 90

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 1/105 (0%)

Query: 123 VGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 182
           +GS+            R       P AS+            PP   P P P P PAP A 
Sbjct: 1   MGSSHHHHHHSSGLVPRG-SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 183 PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
            PP                  P     + +       G +  +S+
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 21/98 (21%), Gaps = 6/98 (6%)

Query: 110 GQVLPPLKPP---PGRVGSTLQGMPPLKPPPGR---AEPLPHEPPASLRPHPPSGPPPPP 163
              L  L PP   P              PP      +         +        P    
Sbjct: 33  SDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRY 92

Query: 164 PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
              P P  P +  PA     P     P P P P     
Sbjct: 93  GRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEE 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 66/455 (14%), Positives = 126/455 (27%), Gaps = 151/455 (33%)

Query: 300 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 359
             ++   D K  Q+   M +  ++  +E  D ++                +  A     L
Sbjct: 27  DAFVDNFDCKDVQD---MPK--SILSKEEIDHIIM---------------SKDAVSGT-L 65

Query: 360 RLFNG-ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKE 418
           RLF      Q    ++F++ ++ I + F        M  ++ E         +       
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 419 LRNS-RLFLKL----LEAV--LKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV------ 465
           L N  ++F K     L+    L+                     LL+L   K V      
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQA-------------------LLELRPAKNVLIDGVL 159

Query: 466 -DGKTTLLHFVVQEIIRSEGVRAARRARESR----SFSSVKTDDLLEE---------TSK 511
             GKT +      ++  S  V   +   + +    +  +  + + + E            
Sbjct: 160 GSGKTWV----ALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 512 SNETDEHYRNLGL------QAVSHLSSE---------LENVKKAAAIDADSLTGTVSKLG 556
                +H  N+ L        +  L            L NV+ A A +A +L+    K+ 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKI- 268

Query: 557 HALLKTRDFLNTDMKNLG---------ENSGFH--ETLKSFVQNAEGDIMWLLEEEKRIM 605
             LL TR    TD  +            +      E     ++  +     L  E     
Sbjct: 269 --LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 606 SLVKST-GDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTAS 664
               S             E +R      D +  ++  C ++    + S   L+       
Sbjct: 327 PRRLSIIA----------ESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLE------- 367

Query: 665 SSSDTPQQPSPDLRHR-----LFPA---ITERRVE 691
                      + R       +FP    I    + 
Sbjct: 368 ---------PAEYRKMFDRLSVFPPSAHIPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 58/431 (13%), Positives = 125/431 (29%), Gaps = 130/431 (30%)

Query: 237 NAPKTKLKPFFWDKVLANP----DNSMVWHQ--IKSGSFQF---------NEEMIETLFG 281
           ++ + +L+     K   N      N  V +     +  F            +++ + L  
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNA--FNLSCKILLTTRFKQVTDFLSA 283

Query: 282 YSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTL----EEVCDALLEGNE 337
            +    +      +L               +  S++L+ L+        EV       N 
Sbjct: 284 ATTTHISLDHHSMTLT------------PDEVKSLLLKYLDCRPQDLPREVLT----TNP 327

Query: 338 LPAELIQTLLK-MAPTAE-------EELKLRLFNGELSQLGPAE--RFLKAL------VD 381
               +I   ++    T +       ++L   +    L+ L PAE  +    L        
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 382 IPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMND 441
           IP        LL    +  +V    +   ++     +L    L  K          +  +
Sbjct: 387 IP------TILL--SLIWFDVI-KSDVMVVVN----KLHKYSLVEK----------QPKE 423

Query: 442 GTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVK 501
            T      +  L+  +KL +          LH   + I+         +  +S       
Sbjct: 424 STIS--IPSIYLELKVKLENEYA-------LH---RSIVDH---YNIPKTFDSDDLIPPY 468

Query: 502 TDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAA-----IDADSLTGTVSKLG 556
            D               Y ++G     HL   +E+ ++        +D   L   +    
Sbjct: 469 LDQYF------------YSHIG----HHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 557 HALLKTRDFLNT--DMKN----LGENSGFHE----TLKSFVQNAEGDIMWLLEEEKRIM- 605
            A   +   LNT   +K     + +N   +E     +  F+   E ++  +  +   ++ 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLR 569

Query: 606 -SLVKSTGDYF 615
            +L+      F
Sbjct: 570 IALMAEDEAIF 580

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 65.5 bits (159), Expect = 4e-12
 Identities = 29/106 (27%), Positives = 39/106 (36%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
           P P +   +    PA L P     PPP P   P P P P P P   AP    KP P P P
Sbjct: 29  PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 240
            P+     +  P         RP    ++++ +    +   A   K
Sbjct: 89  KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 23/122 (18%), Positives = 31/122 (25%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           QV+    P      + +       P   +  P P   P       P  P   P     P+
Sbjct: 24  QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
           P P P P P             P   R         P    S        +  +S + G 
Sbjct: 84  PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 231 GA 232
            A
Sbjct: 144 RA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 26/123 (21%), Positives = 34/123 (27%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 178
           P G   S  Q +    P    +  +               P P   P P P P P P   
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74

Query: 179 PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANA 238
                  PKP P P P P      +P   +      P  P      +    + A    + 
Sbjct: 75  APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

Query: 239 PKT 241
           P T
Sbjct: 135 PVT 137

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 22/107 (20%), Positives = 29/107 (27%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           V P    PP  V    + +   +P P      P E P  +    P   P P P       
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P        + P  P     P              P+ S +  PR  
Sbjct: 100 PKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 25/105 (23%), Positives = 32/105 (30%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           E      P S+    P+   PP    P P P   P P P   P PPK  P     P+  P
Sbjct: 27  ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86

Query: 201 APRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
            P+P P      +  R     +   +S             T    
Sbjct: 87  KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.9 bits (134), Expect = 6e-09
 Identities = 17/102 (16%), Positives = 29/102 (28%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
             ++PPP  V        P+  PP  A  +  +P    +P P         P    +P  
Sbjct: 49  QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 108

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
           +   +P     P +            P         + S+  
Sbjct: 109 SRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 17/105 (16%), Positives = 21/105 (20%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P    PP       +  P   P P +  P+  E P       P         P     P 
Sbjct: 48  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
              PA       P                      P      +P 
Sbjct: 108 ESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 14/108 (12%), Positives = 21/108 (19%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
                  P P           P  P          +P    +P P       P     P 
Sbjct: 48  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
                +P     P             +   +    P   S ++   P 
Sbjct: 108 ESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 22/76 (28%)

Query: 143 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
           +P     S+        P  P       P     P    PPP P   P P P P   P  
Sbjct: 14  VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73

Query: 203 RPPPPMPSGSKVPRPP 218
             P  +      P+P 
Sbjct: 74  EAPVVIEKPKPKPKPK 89

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 16/74 (21%), Positives = 19/74 (25%)

Query: 145 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
           H     +              P   +P       P    PP    PPP P     P P P
Sbjct: 8   HHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEP 67

Query: 205 PPPMPSGSKVPRPP 218
            P  P  + V    
Sbjct: 68  IPEPPKEAPVVIEK 81

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 21/110 (19%), Positives = 25/110 (22%), Gaps = 7/110 (6%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           G      P G         P    P     PP        P       P       P   
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH-G 59

Query: 189 GPPPPPPPRGGPAPRPP------PPMPSGSKVPRPPLGQKHSSSSVGAGA 232
           G    P   G   P               +K  +P    KH + +  AGA
Sbjct: 60  GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGA 109

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 61.0 bits (147), Expect = 1e-10
 Identities = 17/126 (13%), Positives = 22/126 (17%), Gaps = 3/126 (2%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
                P G   +     P    P G   P            P  G    P      +P  
Sbjct: 3   KKRPKPGGGWNTGGSRYPGQGSPGGNRYP---PQGGGGWGQPHGGGWGQPHGGGWGQPHG 59

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 233
                P         G               P    +  K              +G    
Sbjct: 60  GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYML 119

Query: 234 GDANAP 239
           G A + 
Sbjct: 120 GSAMSR 125

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 18/102 (17%), Positives = 21/102 (20%), Gaps = 4/102 (3%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
              P      +      P    P   R PP            P  G    P   G   P 
Sbjct: 3   KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGG----GGWGQPHGGGWGQPHGGGWGQPH 58

Query: 204 PPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
                         P G          G     + PKT +K 
Sbjct: 59  GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH 100

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 19/113 (16%), Positives = 21/113 (18%), Gaps = 7/113 (6%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPH-----EPPASLRPHPPSGPPPPPPPPPA 168
            P +  PG      QG      P G     PH     +P       P  G    P     
Sbjct: 19  YPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGG 78

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 221
                         P  PK             A                PL  
Sbjct: 79  --WGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIH 129

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 165 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP---PMPSGSKVPRPPLGQ 221
               P+P           P    PG    PP  GG   +P       P G    +P  G 
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 222 KHSSSSVGAGAEGDANAPKTKLKPFFWDK 250
                  G G                W+K
Sbjct: 62  WGQPHGGGWGQPHGGGGWGQGGTHGQWNK 90

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 57.2 bits (138), Expect = 7e-10
 Identities = 12/64 (18%), Positives = 15/64 (23%)

Query: 149 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 208
            S + H        P     P+      PA R         P    P  GG +       
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 209 PSGS 212
            S  
Sbjct: 62  GSAG 65

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 18/80 (22%), Gaps = 2/80 (2%)

Query: 138 GRAEPLPHE--PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
           G ++   H          H P G     P         + AP    P P    G      
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 196 PRGGPAPRPPPPMPSGSKVP 215
              G +        SG    
Sbjct: 62  GSAGTSVTLQLDDGSGRTYQ 81

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 7/63 (11%), Positives = 12/63 (19%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           +     +  L        +    + P            P    PAP       + G    
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 194 PPP 196
              
Sbjct: 65  GTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 6/74 (8%), Positives = 9/74 (12%)

Query: 127 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 186
           +              P     P       P+G         AP                 
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 187 KPGPPPPPPPRGGP 200
                     +   
Sbjct: 61  YGSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 8/73 (10%), Positives = 9/73 (12%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
                  G      H P       P                 PAP               
Sbjct: 6   HHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65

Query: 191 PPPPPPRGGPAPR 203
                     + R
Sbjct: 66  TSVTLQLDDGSGR 78

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 10/73 (13%), Positives = 15/73 (20%)

Query: 117 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 176
           +         +     +    G AEP   +        P  G P P       +     A
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 177 PAPRAPPPPPKPG 189
                       G
Sbjct: 65  GTSVTLQLDDGSG 77

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 8/66 (12%), Positives = 10/66 (15%)

Query: 121 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 180
           G           L P              + R +       P    PAP           
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 181 APPPPP 186
                 
Sbjct: 62  GSAGTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 6/66 (9%), Positives = 12/66 (18%)

Query: 123 VGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 182
           +GS+            R   +P     +              P      P   +   +  
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 183 PPPPKP 188
                 
Sbjct: 61  YGSAGT 66

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 3/89 (3%)

Query: 130 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
           +P       R  P P +      P P    PP     P+       A    A  P  K  
Sbjct: 4   IPTQTFYGRRWRPAPVQRY---IPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQK 60

Query: 190 PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
                P +  P        P      +  
Sbjct: 61  RAQKKPKKTPPPKPKKTQKPKKPTQKKKS 89

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 56.2 bits (135), Expect = 8e-09
 Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 14/90 (15%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP-----------APRAPPPPPKP 188
            +          RP P     P P PP  PR    P+            A +      + 
Sbjct: 6   TQTFYGRRW---RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA 62

Query: 189 GPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
              P   P   P     P  P+  K  +P 
Sbjct: 63  QKKPKKTPPPKPKKTQKPKKPTQKKKSKPG 92

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 3/102 (2%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
           P +   GR     +  P  +  P    P P                         +    
Sbjct: 5   PTQTFYGR---RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKR 61

Query: 175 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
               P+  PPP       P  P      +P   M +  K+  
Sbjct: 62  AQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 10/92 (10%), Positives = 15/92 (16%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
              +P P +        P           L     A                    + PP
Sbjct: 12  RRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPP 71

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
                 + P  P +     P            
Sbjct: 72  PKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 15/82 (18%), Gaps = 12/82 (14%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP------------PPPPPRGGP 200
           P          P P     P    PAP      P                      R   
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 201 APRPPPPMPSGSKVPRPPLGQK 222
            P+  PP             QK
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQK 86

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 26/111 (23%), Gaps = 10/111 (9%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           Q  PP  P   R  S LQ +               +               PPP P   +
Sbjct: 25  QPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA------QKKPKKTPPPKPKKTQ 78

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP----PPMPSGSKVPRP 217
            P  P    ++ P                P              G KV +P
Sbjct: 79  KPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKP 129

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 27/118 (22%), Positives = 32/118 (27%), Gaps = 6/118 (5%)

Query: 143 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
           LP+     L+   P  PPP    P A  P  A A A RA    P   P  P P   G   
Sbjct: 18  LPNGYMTDLQRPQPPPPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGG 76

Query: 203 RPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL-----KPFFWDKVLANP 255
                  +  +               G+G  G   A    L         W K     
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 15/100 (15%), Positives = 27/100 (27%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
            A+L     +    P PPPP P      A    A     +     P      P+P     
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 208 MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFF 247
               S +         ++++  +   G  +    +     
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 12/100 (12%), Positives = 19/100 (19%), Gaps = 14/100 (14%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP--------------RPPPAPA 176
           PP                ++ R    +    P  P P                +   A A
Sbjct: 33  PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAA 92

Query: 177 PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 216
            A  +       G                 P    +K  +
Sbjct: 93  AATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFK 132

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 12/106 (11%), Positives = 20/106 (18%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
               R +P P  P A+     P              P  +PA                  
Sbjct: 24  TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 240
             +   A                      ++  +    E   +  K
Sbjct: 84  AVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 57.3 bits (137), Expect = 1e-08
 Identities = 15/129 (11%), Positives = 25/129 (19%), Gaps = 3/129 (2%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
                              +   H                   +PA    A     +   
Sbjct: 33  NTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAAS 92

Query: 191 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDK 250
              P      A       PS    P+     +    +   G E    A   K +      
Sbjct: 93  AAKPEE---KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPD 149

Query: 251 VLANPDNSM 259
           V  N + ++
Sbjct: 150 VPKNTEKTL 158

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.5 bits (135), Expect = 2e-08
 Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 5/169 (2%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA----PAPRAPPPPP 186
              +     A+       A       +          +P    A       A  A  P  
Sbjct: 39  GESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEE 98

Query: 187 KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP-KTKLKP 245
           K        P     P+      +  +        K ++ +     E   + P  T+   
Sbjct: 99  KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTL 158

Query: 246 FFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGS 294
              +    + +  + W          N   +      +    NEK    
Sbjct: 159 KPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKE 207

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.5 bits (135), Expect = 2e-08
 Identities = 11/137 (8%), Positives = 28/137 (20%), Gaps = 1/137 (0%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
              +          +G    +    +AE +      +      +          A +P  
Sbjct: 39  GESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEE 98

Query: 174 APAPAP-RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 232
             +      P    KP        +     +     P+          Q     +     
Sbjct: 99  KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTL 158

Query: 233 EGDANAPKTKLKPFFWD 249
           +       +  +   W+
Sbjct: 159 KPKEIKFNSWEELLKWE 175

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 12/112 (10%), Positives = 18/112 (16%), Gaps = 2/112 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
             P  +                                   A           P      
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARE-NKLEKAEGVATASETASPASNEAA 83

Query: 195 PPRGGPAPRPP-PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
                 A     P   +   V   P  +    S     A+ +A     + KP
Sbjct: 84  TTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 8/106 (7%), Positives = 18/106 (16%)

Query: 137 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
             + E       +       SG           +     A   +               P
Sbjct: 18  YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 197 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTK 242
               A        + +  P     +  + +             + K
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAK 123

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 12/106 (11%), Positives = 20/106 (18%), Gaps = 1/106 (0%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           E L  +   +  P                    A            K             
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASET 74

Query: 201 A-PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
           A P       + +         +  +S V A        PK+  + 
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.0 bits (105), Expect = 9e-05
 Identities = 5/101 (4%), Positives = 11/101 (10%)

Query: 145 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 204
           H                P             +            G               
Sbjct: 10  HHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVA 69

Query: 205 PPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
                +          +   ++S     E  +         
Sbjct: 70  TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA 110

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 14/77 (18%), Positives = 15/77 (19%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
                    +              G   PP        P       R P   P     P 
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 194 PPPRGGPAPRPPPPMPS 210
           P   GGP P  P     
Sbjct: 208 PAGPGGPPPPFPAGQTH 224

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 15/78 (19%), Positives = 18/78 (23%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           K    + E    +   S +        PP     A  P             P     P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 194 PPPRGGPAPRPPPPMPSG 211
             P G P P P       
Sbjct: 209 AGPGGPPPPFPAGQTHHH 226

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 12/87 (13%), Positives = 16/87 (18%), Gaps = 7/87 (8%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
                                        P    + A  P+      +     P   R  
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP 206

Query: 200 PAP---RPPPPMPSGSKVPRPPLGQKH 223
                  PPPP P+G           H
Sbjct: 207 GPAGPGGPPPPFPAGQ----THHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 13/80 (16%), Positives = 16/80 (20%)

Query: 115 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 174
                   + S            G+A P      A+           P   P   R P  
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 175 PAPAPRAPPPPPKPGPPPPP 194
             P    PP P         
Sbjct: 209 AGPGGPPPPFPAGQTHHHHH 228

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 13/78 (16%), Positives = 15/78 (19%), Gaps = 2/78 (2%)

Query: 119 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 178
                   +Q     +      E     PP                  P   P     P 
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKA-GPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 179 PRAPPPPPKPGPPPPPPP 196
           P  P  PP P  P     
Sbjct: 208 PAGPGGPP-PPFPAGQTH 224

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 99  VGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSG 158
           V    K F    ++        G++    +  PP         P             P G
Sbjct: 144 VTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAF-PQGGRGRGRFPGAVPGG 202

Query: 159 PPPPPPPPPAPRPPPAPAPAP 179
              P P  P   PPP PA   
Sbjct: 203 DRFPGPAGPGGPPPPFPAGQT 223

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 13/83 (15%), Positives = 15/83 (18%), Gaps = 3/83 (3%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
                              +        P      A  +     G  P   P     P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 174 APAPAPRAPPPPPKPGPPPPPPP 196
                P  PPPP   G       
Sbjct: 209 ---AGPGGPPPPFPAGQTHHHHH 228

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 14/136 (10%), Positives = 24/136 (17%), Gaps = 22/136 (16%)

Query: 120 PGRVGSTLQGMPPLKPPPGRAEPL-----------PHEPPAS-----------LRPHPPS 157
           P R G  + G+P   P     +             P +   +           LR     
Sbjct: 274 PTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQ 333

Query: 158 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
               P P       P                            A      +      P  
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTD 393

Query: 218 PLGQKHSSSSVGAGAE 233
                  ++ +    +
Sbjct: 394 VAASVLQATVLSQPVQ 409

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
            +  +       +PP G  PPP   P    PP   P P+  PP   P PP   PP+G P 
Sbjct: 376 AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYP-PQGYPPQGYPPPPQGAPPQGAPP 434

Query: 202 PRPP 205
             PP
Sbjct: 435 AAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP--PPAPAPAPRAPPPPPKPGPPPPPPPR 197
           A+    +   ++           PP   AP P   P     P+  PP   P    PPPP+
Sbjct: 366 ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQ 425

Query: 198 GGPAPRPPPPMP 209
           G P    PP  P
Sbjct: 426 GAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 26/113 (23%), Positives = 31/113 (27%), Gaps = 3/113 (2%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-PPPPPPPPAP 169
           Q  P +           +     +      E     P A                   A 
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387

Query: 170 RPPPAPAPAPRAPPP--PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 220
            PP   AP P+  PP   P  G PP   P  G  P P    P G+    PP G
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 102 TAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH--PPSGP 159
           T     E+    P       ++   +  M  ++       P  + PP    P    P   
Sbjct: 352 TEIPAGESSDAAPS--ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQG 409

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 198
            PP   PP   PPP     P+  PP    G PP  PP+G
Sbjct: 410 YPPQGYPPQGYPPP-----PQGAPP---QGAPPAAPPQG 440

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ--KH 223
           P+ PPAP   P  P     P   P  P      P  PP   S +  PR P  +   H
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNH 58

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
           P  PP P   P  P     P   P  P  P      PP       APR P       ++P
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA-----DRLP 56

Query: 216 R 216
            
Sbjct: 57  N 57

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 17/76 (22%), Positives = 20/76 (26%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
           A P     P        +   P  P PPA    P   P P+    P  P PP P      
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 200 PAPRPPPPMPSGSKVP 215
            A            + 
Sbjct: 63  VAAGHATLREHLRDIK 78

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 25/84 (29%)

Query: 166 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 225
           P AP  P  P  A         P  P PP     P   P P      K P PP     ++
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 226 SSVGAGAEGDANAPKTKLKPFFWD 249
           +     A    +    K +    +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 21/85 (24%)

Query: 163 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
           P  P +P  P   A    A   P  P PP       G         P     PRP     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 223 HSSSSVGAGAEGDANAPKTKLKPFF 247
             ++      E   +         F
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 12/98 (12%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPG 189
           P     PG          A+  P  P+ P     P   P+P     P  P  P P     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 190 PPPPPPPRGGPAPRPPP-----------PMPSGSKVPR 216
                        R              P P+G+ V +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ 99

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 19/74 (25%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
           P  P +   P   +        P  P PP   A     P P     P  P PPR      
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 204 PPPPMPSGSKVPRP 217
                 +  +    
Sbjct: 62  TVAAGHATLREHLR 75

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 16/84 (19%), Positives = 21/84 (25%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           +P     P +      +      P  PAP    A       P    KP  P PP P G  
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 201 APRPPPPMPSGSKVPRPPLGQKHS 224
           A            +         +
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-PPMPSGSKV 214
           P+ P  P  P  A     A        PP     P   P P+    P+ P PP P+G   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 215 PRPPLGQKHSSSSVGAGAEGD 235
                            AE  
Sbjct: 62  TVAAGHATLREHLRDIKAENT 82

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 20/78 (25%), Gaps = 2/78 (2%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPA-PAPRAPPPPPKPGP-PPPPPPRGGPAPRPPPPMPS 210
           P  P+ P  P            PA PAP A    P   P P        P P  P    +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 211 GSKVPRPPLGQKHSSSSV 228
                   L +       
Sbjct: 62  TVAAGHATLREHLRDIKA 79

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 28/143 (19%), Positives = 37/143 (25%), Gaps = 3/143 (2%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
                P    G+T     P  P   R  P P  PP    P                  P 
Sbjct: 11  RVNHEPEPAGGATPGATLPKSPSQLRKGP-PVPPPPKHTPSKEVKQEQILSLFEDTFVPE 69

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 233
                P  P    +      P    G            +    P +  +   ++V    E
Sbjct: 70  ISVTTPSQPAEASEVAGGTQPAA--GAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

Query: 234 GDANAPKTKLKPFFWDKVLANPD 256
           G + A +  L P F  KV A  D
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHD 150

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 20/115 (17%), Positives = 32/115 (27%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
            P        EP     P +  P  PS     PP PP P+  P+            +   
Sbjct: 7   TPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTF 66

Query: 191 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
            P         P     +  G++          +++S  A +   A   +T    
Sbjct: 67  VPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 16/100 (16%), Positives = 21/100 (21%)

Query: 129 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           G P   P             A+     P  P      PP P PP                
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 189 GPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 228
                 P      P  P      +   +P  G +    + 
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETA 101

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 23/93 (24%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
            P      R       MP       + + L     A +         P P PPP  +   
Sbjct: 16  APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
              P     P P +     P   + G   R   
Sbjct: 76  PKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMAL 108

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
               P    + S +Q +          +    + P   RP PP       P  P     P
Sbjct: 29  AAPMPARNGLASQIQQLTTAVSALVIGQATRPQNP---RPRPPPRQKKQAPKQPPKPKKP 85

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
            P    +  P   KPG       +             G
Sbjct: 86  KPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDG 123

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 18/87 (20%), Gaps = 16/87 (18%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPA----------------PAPRAPPPPPKPGPPPPPP 195
            P     P       P P      +                      P P  P       
Sbjct: 16  APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75

Query: 196 PRGGPAPRPPPPMPSGSKVPRPPLGQK 222
           P+  P P+ P P     K P      K
Sbjct: 76  PKQPPKPKKPKPQEKKKKQPAKTKPGK 102

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 147 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP----PPPPKPGPPPPPPPRGGPAP 202
           P A  RP       P P              A  A        P+   P PPP +   AP
Sbjct: 17  PTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAP 76

Query: 203 RPPPPMPSGSKVPRPP 218
           + PP         +  
Sbjct: 77  KQPPKPKKPKPQEKKK 92

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 6/78 (7%), Positives = 11/78 (14%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
           +   ++            P   P          +    P + P                 
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 201 APRPPPPMPSGSKVPRPP 218
                      S    P 
Sbjct: 299 PASVEYHAGMKSLNKAPY 316

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 51.9 bits (123), Expect = 3e-07
 Identities = 8/73 (10%), Positives = 12/73 (16%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
                 R +  +     P      + P +             P   P    R        
Sbjct: 235 LFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVN 294

Query: 206 PPMPSGSKVPRPP 218
           P     S      
Sbjct: 295 PVSTPASVEYHAG 307

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 51.1 bits (121), Expect = 6e-07
 Identities = 10/86 (11%), Positives = 16/86 (18%)

Query: 142 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 201
            L +    S +    +  P    P  +P               P                
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293

Query: 202 PRPPPPMPSGSKVPRPPLGQKHSSSS 227
                P           L +   SS+
Sbjct: 294 NPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 50.3 bits (119), Expect = 9e-07
 Identities = 15/93 (16%), Positives = 17/93 (18%)

Query: 120 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 179
           P  V   L      +    RA         S    P S             P  AP    
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285

Query: 180 RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
           R            P         +     P  S
Sbjct: 286 RRSETESVNPVSTPASVEYHAGMKSLNKAPYSS 318

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 12/93 (12%), Positives = 16/93 (17%), Gaps = 1/93 (1%)

Query: 138 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
           G    L +   +       S         P    P     +          G  P   P 
Sbjct: 223 GHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPT 282

Query: 198 GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
                R      +    P          S   A
Sbjct: 283 -ERTRRSETESVNPVSTPASVEYHAGMKSLNKA 314

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 47.6 bits (112), Expect = 7e-06
 Identities = 13/102 (12%), Positives = 16/102 (15%)

Query: 96  FGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP 155
                G           L  L     +          + P              S+   P
Sbjct: 218 IQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVP 277

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
            S P             P   PA        K     P    
Sbjct: 278 FSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 10/88 (11%), Positives = 17/88 (19%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
            L                      +P  +P +             P              
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291

Query: 210 SGSKVPRPPLGQKHSSSSVGAGAEGDAN 237
           S + V  P   + H+       A   +N
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 2/79 (2%)

Query: 125 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 184
              +  P L       E LP   PAS    P +     P  P    P     PA   P  
Sbjct: 300 QMAKDYPGLYKTAVTQEALPGSAPAS-EAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGA 358

Query: 185 P-PKPGPPPPPPPRGGPAP 202
                   P P     PAP
Sbjct: 359 AEAAGSVEPAPVEEVAPAP 377

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 21/85 (24%), Gaps = 2/85 (2%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP-PPAPAPAPRAPPPPPKPGPPP 192
           KP  G      +           + P   P    AP     A   AP    P  +  P  
Sbjct: 294 KPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAA 353

Query: 193 PPPPRGGPAPRPPPPMPSGSKVPRP 217
             P     A    P  P     P P
Sbjct: 354 AEPGAAEAAGSVEPA-PVEEVAPAP 377

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 20/84 (23%), Gaps = 6/84 (7%)

Query: 127 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 186
           L G    K  PG  +    +         P   P     P A       APA   P    
Sbjct: 296 LYGAQMAKDYPGLYKTAVTQEA------LPGSAPASEAAPAAATEAAPEAPAQEVPAAEA 349

Query: 187 KPGPPPPPPPRGGPAPRPPPPMPS 210
            P    P       +  P P    
Sbjct: 350 VPAAAEPGAAEAAGSVEPAPVEEV 373

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 19/72 (26%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P L        +     P  +  P  A     E PA   P   + P    P         
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365

Query: 174 APAPAPRAPPPP 185
            PAP     P P
Sbjct: 366 EPAPVEEVAPAP 377

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 27/131 (20%), Positives = 36/131 (27%), Gaps = 2/131 (1%)

Query: 117 KPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 175
           +P P R+    L    P    P    P      +  R  PP+ P      PPA R     
Sbjct: 14  RPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLS 73

Query: 176 APAPRAPPPPPKP-GPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 234
                +P  P  P  P  P P +      P    P      +        +S +    E 
Sbjct: 74  VDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAREL 133

Query: 235 DANAPKTKLKP 245
            A     K   
Sbjct: 134 GARVRALKASA 144

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 25/137 (18%), Positives = 35/137 (25%), Gaps = 2/137 (1%)

Query: 111 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 170
           +   P +P      S   G      PP         PPA  R          P  P AP 
Sbjct: 28  RTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPD 87

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA--PRPPPPMPSGSKVPRPPLGQKHSSSSV 228
            P  P+P  +     P  G PP                 +    ++       K S+   
Sbjct: 88  IPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDA 147

Query: 229 GAGAEGDANAPKTKLKP 245
           G     +A     +   
Sbjct: 148 GESCTPEAEGRPEEPCG 164

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 46.3 bits (108), Expect = 3e-05
 Identities = 17/73 (23%), Positives = 23/73 (31%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
              GPP   PP  A R P    PA RAP            PP      +  PP     ++
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 215 PRPPLGQKHSSSS 227
               +    +  +
Sbjct: 73  SVDEVSSPSTPEA 85

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 22/110 (20%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
            P  +   G +G    G       PG+A       P                 PP P  P
Sbjct: 408 PPGARGQAGVMG--FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 465

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
                       P   G P P  P G    +P      G      P G +
Sbjct: 466 AGERGEQGPAGSPGFQGLPGPAGPPGEA-GKPGEQGVPGDLGAPGPSGAR 514

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 23/112 (20%), Positives = 29/112 (25%), Gaps = 4/112 (3%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
                   G  G    G P    P G+      + P              P   P  +  
Sbjct: 426 AAGEPGKAGERGVP--GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL 483

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
           P PA  P     P + G P      G  G       P   G + P  P G +
Sbjct: 484 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPR 535

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 20/107 (18%), Positives = 24/107 (22%), Gaps = 1/107 (0%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P    P G+ G     G      P G                  +   P          
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           PP               GPP P  P G    + P   P    +P P 
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 25/116 (21%), Positives = 30/116 (25%), Gaps = 6/116 (5%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P    P G+ G    QG P    P G             +  P    PP     P  + 
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRG-----GPAPRPPPPMPSGSKVPRPPLGQK 222
            P    AP       + G P      G     GP      P   G+K      G  
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 32/130 (24%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 114 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
           P     PG  G    +G+      PG         PA     P    PP           
Sbjct: 361 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGF 420

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
           P P  A   P    + G P PP   G  G         P G   P    G++  + S G 
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 231 -GAEGDANAP 239
            G  G A  P
Sbjct: 481 QGLPGPAGPP 490

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P  +   G  G+  L GM   +   G         PA  +  P S      P    PR 
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
            P     P AP P    G        G  GP     PP   G+   +   G +
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPE 196

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 27/113 (23%), Positives = 30/113 (26%), Gaps = 6/113 (5%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
               +  PG  G     G        G   P       S     P G   PP P      
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGR 402

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
           P    P P A       G P P    G  G A     P P G+  P    G+ 
Sbjct: 403 PGPAGP-PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 454

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           +     P G  G     G   +  PPG                    P P  P       
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGA----VGPAGKDGEAGAQGPPGPAGPAGERGEQ 472

Query: 172 PPAPAPAPRAPPPPP-KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
            PA +P  +  P P   PG    P  +G P     P  PSG++  R   G++
Sbjct: 473 GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG-PSGARGERGFPGER 523

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 1/98 (1%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P      G  G +   G P    P G+               P    PP PP P   + 
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
            P       AP  P   G        G P  R     P
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 811

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 25/113 (22%), Positives = 29/113 (25%), Gaps = 3/113 (2%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
                  PG  G+    G   L    GR                 +  PP P  P  P  
Sbjct: 123 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPG 182

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
            P    A     P    G   P   RG  GP        P+G+       G K
Sbjct: 183 FPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P      G  G  LQGMP  +   G   P      A  +    +           P  PP
Sbjct: 553 PGAPGSQGAPG--LQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPP 610

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
            PA AP         GP  P   RG  G    P PP P+G   P    GQ 
Sbjct: 611 GPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQP 661

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 27/113 (23%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P      G  G    +G P    P G          A L         P  P P     
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
           PP PA     P P   PG        G  GP      P  +G +    P G  
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 445

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 13/106 (12%), Positives = 27/106 (25%)

Query: 122 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 181
           ++ +  Q +  +      +  + +   AS          PP     +P      +     
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 182 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
                        P R   +  P P   S   +        + +SS
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSS 108

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 14/110 (12%), Positives = 19/110 (17%), Gaps = 6/110 (5%)

Query: 109 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 168
             QV+  +        +        K  P          P +     P    P     P 
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLP----LNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
                        P    K     P P    P            +   P 
Sbjct: 63  HGSLQGYQTYGHFPSRAIK--SEYPDPYTSSPESIMGYSYMDSYQTSSPA 110

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 1/107 (0%)

Query: 133 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 192
           L+      + +P +   S             P   A  PP     +P    P      PP
Sbjct: 4   LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPIS-MTMPP 62

Query: 193 PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
               +G       P     S+ P P      S            ++P
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSP 109

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 51.8 bits (122), Expect = 5e-07
 Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 101 GTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPP 160
           G   + N       P+ P           +        RA  +P       +P PP  P 
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE--KPTPPVKPT 458

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 197
            P  P       P   PAP AP    +P PP      
Sbjct: 459 APTKPTY-ETEKPLK-PAPVAPNYEKEPTPPTRLEHH 493

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 50.3 bits (118), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 19/75 (25%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
                          P          R    P      P PP KP  P  P        +
Sbjct: 413 DMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLK 472

Query: 204 PPPPMPSGSKVPRPP 218
           P P  P+  K P PP
Sbjct: 473 PAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.0 bits (112), Expect = 8e-06
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 6/110 (5%)

Query: 96  FGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP 155
           +GA        N    V          V               +              + 
Sbjct: 384 YGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNV 443

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
           P      P PP  P  P  P       P  P P  P          P PP
Sbjct: 444 PKVTKEKPTPPVKPTAPTKPTY-ETEKPLKPAPVAPNYE-----KEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 47.2 bits (110), Expect = 1e-05
 Identities = 13/100 (13%), Positives = 21/100 (21%)

Query: 116 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 175
           +  P   V         + P          +     +P+              P+     
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450

Query: 176 APAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
              P  P  P KP      P +  P        P+     
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 17/81 (20%), Gaps = 3/81 (3%)

Query: 132 PLKPPPGRAEPLPHEPPASLRPHP--PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 189
              P     +    + P               P      P PP  P  AP  P    +  
Sbjct: 412 SDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP-TAPTKPTYETEKP 470

Query: 190 PPPPPPPRGGPAPRPPPPMPS 210
             P P          PP    
Sbjct: 471 LKPAPVAPNYEKEPTPPTRLE 491

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
              PP      P  AP PA    P PP  G  PPPP  GG  P        G   P P 
Sbjct: 54  SKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPP------VDGGSPPPPS 106

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 153 PHPPSGPPPPP--PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
             PP   P PP   PPPA    P   PA    PPPP  G  PP      P P
Sbjct: 55  KSPPGATPAPPGAAPPPAAGGSP-SPPADGGSPPPPADGGSPPVDGGSPPPP 105

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 134 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           K PPG     P   P      PP+    P PP     PPP   PA    PP     PPPP
Sbjct: 55  KSPPGATPAPPGAAP------PPAAGGSPSPPADGGSPPP---PADGGSPPVDGGSPPPP 105

Query: 194 P 194
            
Sbjct: 106 S 106

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 13/48 (27%), Positives = 14/48 (29%)

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           P    P P P    +   AP A P  P      P P      P  P  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 13/53 (24%), Positives = 14/53 (26%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
               P P P    +    PA APA  A P       P    P       P   
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 11/51 (21%), Positives = 12/51 (23%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
           P    P P P   +       A       P   P P P       P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 14/48 (29%)

Query: 148 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
           P    P P           PA  P    APA    P P   GP  P  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 14/51 (27%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           P    P P       A A    AP  P  P   P P P       P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
            +  P E      P P +       P  AP  P APA AP   P    P  P    P
Sbjct: 90  YDVEPIEDEPE--PTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           P    P P P  A     APA AP AP  P     P P         +  P   +
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 17/48 (35%)

Query: 137 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 184
           P   EP P    AS     P+  P  P  P A   P   +  P AP  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 195
           EP+  EP  +      +   P   P     P  APAPAP +  P       P   
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 14/54 (25%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           P     EP P    ++      +   P  P       P +  PA      P   
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 12/55 (21%)

Query: 169 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 223
               P P PA  +         P  P          P      + V   P+    
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 13/48 (27%), Positives = 13/48 (27%)

Query: 160 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
           P        P    APAP P A  P P    P P       A      
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 12/47 (25%), Positives = 12/47 (25%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
                   PA    PAP PA  AP P      P         A    
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 196
             P P E  A     P     P P P  +   P A APAP A   P          P
Sbjct: 90  YTPDPSELAAK--EEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 10/47 (21%), Positives = 11/47 (23%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 202
           PS       P     P P PA +  AP            P       
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 12/53 (22%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 207
                   P    AP P PA +    A   P       P       A  P   
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 11/54 (20%), Positives = 11/54 (20%)

Query: 152 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
            P P        P       P   A AP      P P     P          P
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 7/51 (13%), Positives = 9/51 (17%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209
           P          +          + P P    P P        A       P
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 12/57 (21%), Positives = 13/57 (22%), Gaps = 3/57 (5%)

Query: 162 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
           P        P    APAP      P    P    P    A  P       +  P   
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAP---APAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 14/54 (25%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 188
           P    A+  P +  A       S P P    P         A A      P K 
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 140 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 193
           +E    E PA     P   P    P P A  P P  A AP A        P   
Sbjct: 95  SELAAKEEPAKEEA-PAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 205
            P +++      GPP      P+            +        PPP  P     +    
Sbjct: 3   TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPD--ASSSSSS 60

Query: 206 PPMPSGSKVPRP 217
             +P+      P
Sbjct: 61  FAVPTIHFKESP 72

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 12/65 (18%)

Query: 144 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
                A         P      P   R  P             +  PP  P      +  
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 204 PPPPM 208
             P +
Sbjct: 62  AVPTI 66

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
             P S         P      +P+   ++P    K            P P  P    S S
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSR--APPPTNPDASSSSS 59

Query: 213 KVPRPPLGQKHS 224
               P +  K S
Sbjct: 60  SFAVPTIHFKES 71

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 10/63 (15%), Positives = 13/63 (20%)

Query: 141 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
            PL      S+   P      P     +P      +        PP   P          
Sbjct: 3   TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62

Query: 201 APR 203
            P 
Sbjct: 63  VPT 65

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 5/77 (6%)

Query: 126 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 185
           +L  +  +        P   +   S+    P+            R PP     P  P   
Sbjct: 1   SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPP-----PTNPDAS 55

Query: 186 PKPGPPPPPPPRGGPAP 202
                   P      +P
Sbjct: 56  SSSSSFAVPTIHFKESP 72

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 23/113 (20%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 171 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 230
             P  A   R+   PP      P   R  P  R      S +    PP     SSSS   
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 231 GAEGDANAPKTKLKPFFWDK----VLANPDNSMVWHQIKSGSFQFNEEMIETL 279
                      K  PF+  +     L           + S  F+ ++     L
Sbjct: 62  ----AVPTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLL 110

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 8/56 (14%), Positives = 8/56 (14%), Gaps = 2/56 (3%)

Query: 157 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP--RPPPPMPS 210
            G                                 P  P     A   R    MPS
Sbjct: 79  PGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPS 134

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 6/60 (10%), Positives = 8/60 (13%), Gaps = 2/60 (3%)

Query: 146 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP--PPRGGPAPR 203
           + P                                  P  P       P       P+ R
Sbjct: 77  DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVR 136

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 12/119 (10%), Positives = 18/119 (15%), Gaps = 34/119 (28%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP----------- 183
              G+ +    +   +             P  PA      P     A P           
Sbjct: 85  TFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGV 144

Query: 184 -----------------------PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 219
                                         P     +  PA   P          R  +
Sbjct: 145 DIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKM 203

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Length = 398

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 15/62 (24%), Positives = 19/62 (30%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 190
             L     + +    EP A++   PPS      P     R  P    A      PP P  
Sbjct: 173 SFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPAR 232

Query: 191 PP 192
           P 
Sbjct: 233 PE 234

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 112 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
           + P L P  G  G     +  L  P     P      + + PH  S P  P        P
Sbjct: 38  LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 97

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 215
             +    P +     K  PP            P   M S +K  
Sbjct: 98  QLSSPMNPVSSSEDIK--PPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 22/111 (19%), Positives = 25/111 (22%), Gaps = 2/111 (1%)

Query: 135 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 194
                  P      A+   HP  GP    P       P +   +P     PP      P 
Sbjct: 20  VNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQ--LHSPISTLSSPINGMGPPFSVISSPM 77

Query: 195 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 245
            P     P  P    S             SSS       G     K    P
Sbjct: 78  GPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 5/120 (4%)

Query: 109 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 168
           N  +  P         S    + P    PG+     H P ++L        PP       
Sbjct: 21  NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQ----LHSPISTLSSPINGMGPPFSVISSP 76

Query: 169 PRPPPAPAPA-PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
             P     P  P        P    P  P        PP   +G            +S +
Sbjct: 77  MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 29/113 (25%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 113 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 171
            P    P G  G     G P  K   G   P+  + P   +    +  PP P     P  
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAG 694

Query: 172 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP--SGSKVPRPPLGQK 222
           P   A        P   G   PP P G   P  PP      G + PR   G  
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPV 747

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 25/111 (22%), Positives = 28/111 (25%), Gaps = 4/111 (3%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
           P      G VG  L G      P G            ++       P  PP       P 
Sbjct: 423 PGKPGEKGNVG--LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPA 480

Query: 174 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP--PMPSGSKVPRPPLGQK 222
            PA     P      G    P P G    R PP     +G   P    G  
Sbjct: 481 GPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPS 531

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 20/110 (18%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 113 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
               +   G +G    G       PG+     +   A  R  P          PP  +  
Sbjct: 401 PAGPRGEAGAIG--FPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGV 458

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
                      PP   G P P  P G         +  G      P G +
Sbjct: 459 QGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLH-GEFGLPGPAGAR 507

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 114 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 172
           P L+   G  G     G P  +  PG A P         R        P P      R P
Sbjct: 453 PGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGP 512

Query: 173 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
           P    A     P    GP  PP P G            G+  P  P G  
Sbjct: 513 PGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA-GAPGPAGPPGIP 561

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 22/105 (20%), Positives = 24/105 (22%), Gaps = 2/105 (1%)

Query: 119 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
             G VG     G      P G A P      A                PP P     P  
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 222
            P A       GP     P G            G    + P G+ 
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPT-GFVGEKGPTGEP 771

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 19/101 (18%), Positives = 22/101 (21%), Gaps = 1/101 (0%)

Query: 119 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
             G  G    QG+       G            +        P     PP  R PP    
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVG 832

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 218
            P     P + G    P   G P     P        P   
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNA 873

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 22/107 (20%), Positives = 29/107 (27%), Gaps = 3/107 (2%)

Query: 119 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
            PG+ G    +G+P  +   G            +R H         P  P  +  P    
Sbjct: 65  HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPG 124

Query: 178 APRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 222
               P      G P      G  GPA         G   P  P+G  
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSA 171

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 4/53 (7%), Positives = 4/53 (7%)

Query: 151 LRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
           LR  P                                             A  
Sbjct: 255 LRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAA 307

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 6/58 (10%), Positives = 11/58 (18%)

Query: 163 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 220
           P          A              G           + R  P   + +++ R    
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDN 316

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 7/57 (12%), Positives = 12/57 (21%)

Query: 143 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 199
           L  +P  + +    +                  A A        +  P      R G
Sbjct: 255 LRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIG 311

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 5/53 (9%), Positives = 6/53 (11%)

Query: 159 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 211
           P                    R      +          G   P        G
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIG 311

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 154 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 186
           +  +       PPP+  PP +  P P  PPP P
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 21/80 (26%), Gaps = 8/80 (10%)

Query: 131 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP-------APRPPPAPAPAPRAPP 183
             L PP    +    E   + R   P  P P   P         A   P      P    
Sbjct: 7   CRLDPPSQDLKDGTQEEA-TKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65

Query: 184 PPPKPGPPPPPPPRGGPAPR 203
             P   P PP   +G P   
Sbjct: 66  EVPTKPPLPPARTQGTPVHL 85

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 150 SLRPHPPSGPPPPPPPPPAPRP---PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
           + R  PPS          A +    P  P P                 P +G   P    
Sbjct: 6   TCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65

Query: 207 PMPSGSKVPRP 217
            +P+   +P  
Sbjct: 66  EVPTKPPLPPA 76

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 2/133 (1%)

Query: 97   GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPP--PGRAEPLPHEPPASLRPH 154
             +   T+ S++       P  P       +     P   P  P  +   P   P S    
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1627

Query: 155  PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
            P S    P  P  +P  P     +P   P  P   P  P      P+  P  P  S +  
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 215  PRPPLGQKHSSSS 227
               P    +S +S
Sbjct: 1688 SYSPTSPNYSPTS 1700

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 31/140 (22%), Positives = 40/140 (28%), Gaps = 7/140 (5%)

Query: 92   GTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL 151
                F  +  +  +    G          G   S           PG     P   P S 
Sbjct: 1488 DELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSP 1547

Query: 152  RPHPPSGPPPPPPPPPAPRPP----PAPAPAPRAPP-PPPKPGPPPPPPPRGGPAPRPPP 206
               P S    P  P  +P  P     +P+ +P +P   P  P   P  P     +P   P
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 207  PMPSGSKVPRPPLGQKHSSS 226
              PS S  P  P     S S
Sbjct: 1608 TSPSYS--PTSPSYSPTSPS 1625

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 37/145 (25%), Gaps = 14/145 (9%)

Query: 97   GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP 156
            G  GG     NE+G V   L      + S L          G                  
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG 1524

Query: 157  SGPPPPPPPPPAPRPP-------------PAPAPA-PRAPPPPPKPGPPPPPPPRGGPAP 202
            +    P  P      P             PA +P  P   P  P   P  P      P+ 
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584

Query: 203  RPPPPMPSGSKVPRPPLGQKHSSSS 227
             P  P  S +     P    +S +S
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTS 1609

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Length = 441

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 25/128 (19%), Positives = 35/128 (27%), Gaps = 12/128 (9%)

Query: 118 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 177
               R      G+ P +P   R +PL      +L  +   G P         +    PAP
Sbjct: 176 DITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKY---GGPAFDEEVVVGQWTIDPAP 232

Query: 178 APRAPPP---------PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 228
           A                   GP   P        R    +  G       +GQ      +
Sbjct: 233 AAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELL 292

Query: 229 GAGAEGDA 236
           GA  + DA
Sbjct: 293 GAVGDVDA 300

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 45.0 bits (105), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
            P+   P        RP     P       PPP      PPPP   P  R   P    + 
Sbjct: 2   APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 61

Query: 214 VPR 216
            P 
Sbjct: 62  SPD 64

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 11/53 (20%), Gaps = 1/53 (1%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 213
                      P   A     PP      PPP      G          +G +
Sbjct: 3   AKAQLSNGYNNPNVNASNMYGPPQNM-SLPPPQTQTIQGTDQPYQYSQCTGRR 54

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Length = 391

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 33/131 (25%), Gaps = 13/131 (9%)

Query: 119 PPGRVGSTLQGMP------PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP-----PPPP 167
             GRV   L  +P       + P  G      HE    +  H      P P     P PP
Sbjct: 125 LIGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPP 184

Query: 168 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 227
           + +   AP  AP    P    G  P               +  G  V           + 
Sbjct: 185 SLQASDAPQGAPVQYVPYNGSGAFPAWGAA--RTSARRVCICMGRMVLNATGPAPLLRAV 242

Query: 228 VGAGAEGDANA 238
             A       A
Sbjct: 243 AAATELPGVEA 253

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 10/55 (18%)

Query: 156 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 210
           P G      P     P    A   R P       P               P   S
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 10/62 (16%), Positives = 13/62 (20%)

Query: 178 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 237
            P        P     P  +     R P    +            H        A   A+
Sbjct: 1   GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 60

Query: 238 AP 239
           AP
Sbjct: 61  AP 62

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... Length = 753

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 23/78 (29%)

Query: 155 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 214
           P     P      A     + AP   +  P  +P PP   P   G    P       + +
Sbjct: 9   PHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLNSL 68

Query: 215 PRPPLGQKHSSSSVGAGA 232
                G ++ + +   G 
Sbjct: 69  EDVRKGSENYALTTNQGV 86

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 31/129 (24%), Gaps = 1/129 (0%)

Query: 153 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 212
                      P                A P       P P  P    APR    MP   
Sbjct: 102 VERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161

Query: 213 KVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFN 272
               PP        + G    G     +         + L+    + +   + +   + N
Sbjct: 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHIL-FLTNLPEETN 220

Query: 273 EEMIETLFG 281
           E M+  LF 
Sbjct: 221 ELMLSMLFN 229

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 12/81 (14%), Positives = 15/81 (18%)

Query: 114 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 173
                P G    +L               L      S +P+        PPP        
Sbjct: 11  SSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAA 70

Query: 174 APAPAPRAPPPPPKPGPPPPP 194
                      P    P P  
Sbjct: 71  FRDAKGLHGHQPWVATPLPGQ 91

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 13/94 (13%), Positives = 17/94 (18%), Gaps = 7/94 (7%)

Query: 107 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 166
           + +      L P    + S +            A  L             S P       
Sbjct: 5   HHHHHHSSGLVPGGSHMCSLIT-------QLCDAGQLADYVGLGWLNAVSSQPYLVQALG 57

Query: 167 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 200
             P P      A            P    P  G 
Sbjct: 58  LQPPPRRVDVDAAFRDAKGLHGHQPWVATPLPGQ 91

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 22/86 (25%), Gaps = 8/86 (9%)

Query: 132 PLKPPPGR--AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP- 188
           P      R   EP  +   A     P S  P  P      R P A        P   +P 
Sbjct: 7   PKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFA-----PAAAEPK 61

Query: 189 GPPPPPPPRGGPAPRPPPPMPSGSKV 214
                       +P+   P+  G   
Sbjct: 62  LFGGFNSSDTVTSPQRAGPLAGGVTT 87

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 11/74 (14%), Positives = 14/74 (18%), Gaps = 1/74 (1%)

Query: 139 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 198
            +  L                      P         A    AP     P   P  P + 
Sbjct: 7   HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGS-APSFNVDPLEQPAEPSKL 65

Query: 199 GPAPRPPPPMPSGS 212
               R  P M +  
Sbjct: 66  AKKLRAEPDMDTSF 79

>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens} Length = 147

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 157 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 206
           S  PPPPP PP  +        PR+    P        P RG   P P P
Sbjct: 2   SSEPPPPPQPPTHQASVGLLDTPRSRERSPS-------PLRGNVVPSPLP 44

>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope protein, HER simplex virus, disulfide bond, HOST cell MEMB HOST endosome; HET: NAG XYL; 3.00A {Human herpesvirus 2} Length = 204

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 10/57 (17%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 217
             P    +   PP  +    +    P     PP        PR   P     +  R 
Sbjct: 146 LRPANTTSTWEPPVSSDDEASSQSKPLAT-QPPVLALSNAPPRRVSPTRGRRRHTRL 201

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 15/43 (34%), Positives = 16/43 (37%)

Query: 161 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 203
             P  P AP P P        PPPPP P    PPP       +
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 144  PHEPPASLRPHPPSGPPPPPPPPPAPRPP------PAPAPA-PRAPPPPPKPGPPPPPPP 196
            P   P S    P S    P  P  +P  P      P+ +P  P   P  P   P  P   
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670

Query: 197  RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 239
               P+  P  P  S +     P    +S +S        + +P
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	699
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	100.0
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	100.0
4eah_A	402	Formin-like protein 3, actin, alpha skeletal muscl	100.0
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	100.0
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	100.0
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	97.17
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	93.07
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	92.46
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	90.88
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	89.93
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	89.92
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	89.61

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=100.00  E-value=7.6e-71  Score=619.58  Aligned_cols=375  Identities=26%  Similarity=0.386  Sum_probs=331.4

Q ss_pred             CCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhcccccccc------ccccC-C------CCCC
Q 005376          234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKN------EKKKG-S------SLDT  298 (699)
Q Consensus       234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~------~~kk~-~------~~~~  298 (699)
                      +....|+.+||+|||++|..+.+++|||+++++..+  .+|+++||++|+.+.....      .+++. .      ...+
T Consensus         6 K~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~k   85 (483)
T 2j1d_G            6 KSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKL   85 (483)
T ss_dssp             CCCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC---------------------------
T ss_pred             CCCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            556679999999999999888899999999988753  5899999999997643221      01111 0      1223


Q ss_pred             CCcceeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC---CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHH
Q 005376          299 GPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN---ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERF  375 (699)
Q Consensus       299 ~~~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~---~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~F  375 (699)
                      +++.|+|||+||+|||+|+|++|++++++|++||+++|   .|+.|.|+.|++++||.||+..|+.|.||.+.|+++|||
T Consensus        86 k~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqF  165 (483)
T 2j1d_G           86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRF  165 (483)
T ss_dssp             --CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHH
T ss_pred             CCCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHH
Confidence            67789999999999999999999999999999999876   499999999999999999999999999999999999999


Q ss_pred             HHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccc
Q 005376          376 LKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT  455 (699)
Q Consensus       376 l~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~s  455 (699)
                      +++|+.||+|..||+||+|+.+|.+.+.+|.+.|.+|..||++|++|+.|+.||++||++|||||+| .||+|+||+|++
T Consensus       166 l~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~s  244 (483)
T 2j1d_G          166 LFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISS  244 (483)
T ss_dssp             HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGG
T ss_pred             HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 799999999999


Q ss_pred             cccccccccC-CCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhH
Q 005376          456 LLKLSDVKGV-DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSEL  534 (699)
Q Consensus       456 L~KL~d~Ks~-d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL  534 (699)
                      |.||.|||++ |+++|||||||+.|.++.                   ++                      +.+|.+||
T Consensus       245 L~KL~d~Ks~~d~k~TLLhylv~~v~~~~-------------------p~----------------------l~~f~~eL  283 (483)
T 2j1d_G          245 LNKIADTKSSIDKNITLLHYLITIVENKY-------------------PS----------------------VLNLNEEL  283 (483)
T ss_dssp             GGGGGGSBCSSCTTCBHHHHHHHHHHHHC-------------------GG----------------------GGGHHHHT
T ss_pred             HHhhhhcccCCCCCccHHHHHHHHHHHhC-------------------ch----------------------hhchHHHH
Confidence            9999999995 999999999998765421                   11                      34688999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005376          535 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD  613 (699)
Q Consensus       535 ~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~-~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~  613 (699)
                      .+|.+|++||++.|..++.+|.+++..++..++..-.. .+.++.|..+|..|+..|+.++..|...++++.+.|++++.
T Consensus       284 ~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~  363 (483)
T 2j1d_G          284 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK  363 (483)
T ss_dssp             TTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888653221 24568899999999999999999999999999999999999


Q ss_pred             cccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376          614 YFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPK  650 (699)
Q Consensus       614 YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~k  650 (699)
                      ||||+..+..+++||++|.+|+..|++|++|+.++++
T Consensus       364 yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~~~  400 (483)
T 2j1d_G          364 HFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRK  400 (483)
T ss_dssp             HTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999976433

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D

Probab=100.00  E-value=3.8e-71  Score=615.73  Aligned_cols=378  Identities=28%  Similarity=0.391  Sum_probs=333.0

Q ss_pred             CCCCCCCCCCcccccccccCCC-CcccccccccCccc--ccHHHHHHHhccccccccccc-------cCCCCCCCCccee
Q 005376          235 DANAPKTKLKPFFWDKVLANPD-NSMVWHQIKSGSFQ--FNEEMIETLFGYSEKSKNEKK-------KGSSLDTGPQYIQ  304 (699)
Q Consensus       235 ~~~~Pk~klK~l~W~ki~~~~~-~~TiW~~i~~~~~~--~d~~~lE~lF~~~~~~k~~~k-------k~~~~~~~~~~v~  304 (699)
                      ....|+.+||+|||++|..+.+ ++|||.++++..+.  -+++.||.+|+.+.......+       +.....++.+.|+
T Consensus         2 k~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~   81 (457)
T 3obv_E            2 KVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELK   81 (457)
T ss_dssp             CCCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCS
T ss_pred             CCCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeE
Confidence            3467999999999999987665 69999999887663  235789999998744221111       1112235678899


Q ss_pred             ecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCC
Q 005376          305 IIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDI  382 (699)
Q Consensus       305 iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~I  382 (699)
                      |||+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.+|...|+.+|||++.|+.|
T Consensus        82 lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~I  161 (457)
T 3obv_E           82 VLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTV  161 (457)
T ss_dssp             SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSS
T ss_pred             ecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHcc
Confidence            99999999999999999999999999999987  4999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccc
Q 005376          383 PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV  462 (699)
Q Consensus       383 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~  462 (699)
                      |++..||+||+|+.+|.+.+.+|.+.|..|..||++|++|+.|+.||++||++|||||+|+.+|+|+||+|++|.||.||
T Consensus       162 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~  241 (457)
T 3obv_E          162 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDT  241 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhh
Q 005376          463 KGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAA  542 (699)
Q Consensus       463 Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~  542 (699)
                      |++|+++|||||||+.+.++                                    |++     +.+|.+||.+|.+|++
T Consensus       242 Ks~d~k~TLLh~l~~~v~~~------------------------------------~p~-----l~~f~~eL~~v~~Aak  280 (457)
T 3obv_E          242 KSADQKMTLLHFLAELCEND------------------------------------HPE-----VLKFPDELAHVEKASR  280 (457)
T ss_dssp             BCSSTTCBHHHHHHHHHHHH------------------------------------CGG-----GGGHHHHCTTHHHHTT
T ss_pred             hcCCCCccHHHHHHHHHHHc------------------------------------Ccc-----ccCChhhhhhHHhhcc
Confidence            99999999999999865432                                    111     3468899999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005376          543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKD  622 (699)
Q Consensus       543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~  622 (699)
                      |+++.|..++.+|.+++..++..++......+.++.|..+|..|+..|+.++..|...++++.+.|++++.|||+|+.+.
T Consensus       281 vs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~  360 (457)
T 3obv_E          281 VSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL  360 (457)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999988876444445678999999999999999999999999999999999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376          623 EGLRLFTIVRDFFIMLDKACKQVKDAPKKST  653 (699)
Q Consensus       623 e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~  653 (699)
                      .+++||++|.+|+.+|++|++|+.+.++.++
T Consensus       361 ~~~eFF~~~~~F~~~fkkA~~eN~~r~e~ee  391 (457)
T 3obv_E          361 SVEEFFMDLHNFRNMFLQAVKENQKRRETEE  391 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986654433

>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}

Probab=100.00  E-value=2.6e-70  Score=600.91  Aligned_cols=374  Identities=23%  Similarity=0.379  Sum_probs=323.6

Q ss_pred             CCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhccccccccc---cccCCCCCCCCcceeecCh
Q 005376          234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE---KKKGSSLDTGPQYIQIIDQ  308 (699)
Q Consensus       234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~~---~kk~~~~~~~~~~v~iLd~  308 (699)
                      +....|+.+||+|||++|..+.+.+|||+++++..+  ++|+++||++|+.+......   ..+.....++++.|+|||+
T Consensus        10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~   89 (402)
T 4eah_A           10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEA   89 (402)
T ss_dssp             CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCH
T ss_pred             CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCH
Confidence            445678999999999999988899999999988776  69999999999986432111   0111112245678999999


Q ss_pred             HHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccc---cccCChHHHHHHHHcCCc
Q 005376          309 KKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE---LSQLGPAERFLKALVDIP  383 (699)
Q Consensus       309 kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d---~~~L~~aE~Fl~~l~~Ip  383 (699)
                      ||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.+|   .+.|+++|||++.|+.||
T Consensus        90 kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip  169 (402)
T 4eah_A           90 NRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVE  169 (402)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHccc
Confidence            9999999999999999999999999886  59999999999999999999999999876   478999999999999999


Q ss_pred             ChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccc
Q 005376          384 FSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVK  463 (699)
Q Consensus       384 ~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~K  463 (699)
                      ++..||+||+|+.+|.+.+.+|.+.|..|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|||
T Consensus       170 ~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~K  248 (402)
T 4eah_A          170 RLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTK  248 (402)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSB
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999 69999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhh
Q 005376          464 GVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAI  543 (699)
Q Consensus       464 s~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~v  543 (699)
                      ++|+++|||||||+.+.++                                    |++     +.+|.+||.+|.+|++|
T Consensus       249 s~d~k~TLLh~l~~~~~~~------------------------------------~p~-----l~~f~~eL~~v~~Aa~v  287 (402)
T 4eah_A          249 STDRKMTLLHFIALTVKEK------------------------------------YPE-----LANFWQELHFVEKAAAV  287 (402)
T ss_dssp             CTTSSSBHHHHHHHHHHHH------------------------------------CGG-----GGTCSTTCCSHHHHHTC
T ss_pred             CCCCCccHHHHHHHHHHhh------------------------------------hHH-----HHHHhhhhhhHHHHhcC
Confidence            9999999999999876432                                    111     34678899999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccc
Q 005376          544 DADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE  623 (699)
Q Consensus       544 d~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e  623 (699)
                      |++.|..++.+|.+++..++..+..       ++  ...|..|+..|+.++..|..+++++.+.|++++.||||++.+..
T Consensus       288 ~~~~l~~d~~~L~~~l~~~~~e~~~-------~d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~~~  358 (402)
T 4eah_A          288 SLENVLLDVKELGRGMELIRRECSI-------HD--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTP  358 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHT-------TC--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc-------cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998876532       11  24899999999999999999999999999999999999999888


Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005376          624 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK  658 (699)
Q Consensus       624 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~kk  658 (699)
                      +++||++|.+|+..|++|++|+.+++++++..+++
T Consensus       359 ~~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~~~~  393 (402)
T 4eah_A          359 PSVFFPVFVRFIRSYKEAEQENEARKKQEEVMREK  393 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998877766544443

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A

Probab=100.00  E-value=2.4e-66  Score=573.40  Aligned_cols=366  Identities=19%  Similarity=0.271  Sum_probs=315.6

Q ss_pred             CCCCCCCCcccccccccCCCCcccccccccCccc--c----cHHHHHHHhccccccccccccCCCCCCCCcceeecChHH
Q 005376          237 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQ--F----NEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKK  310 (699)
Q Consensus       237 ~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~--~----d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~kr  310 (699)
                      ..|+.+||+|||++|..  +++|||+++++..+.  +    |+++||++|+.+...+...++    .++.+.|+|||+||
T Consensus         3 p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~~~k----~~~~~~v~lLd~kr   76 (411)
T 1ux5_A            3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR----KEDLQKITFLSRDI   76 (411)
T ss_dssp             CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHH----HHTTTSBCCSCHHH
T ss_pred             CCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccccccc----cCCCCeeeecChHH
Confidence            57899999999999975  899999999876542  2    789999999987643322111    13456799999999


Q ss_pred             HhhHHHHHHhc-CCCHHHHHHHhhcCCC--CcHHH-HHH------------HH-hcCCCHHHHH------HHHhhccccc
Q 005376          311 AQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAEL-IQT------------LL-KMAPTAEEEL------KLRLFNGELS  367 (699)
Q Consensus       311 aqni~I~L~~l-~~s~~ei~~al~~~~~--L~~e~-l~~------------Ll-~~~Pt~eE~~------~l~~~~~d~~  367 (699)
                      +|||+|+|++| ++++++|++||+++|.  |+.+. |+.            |+ +++|+.+|++      .++.|.||.+
T Consensus        77 aqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~d~~  156 (411)
T 1ux5_A           77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPN  156 (411)
T ss_dssp             HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCST
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhccCChh
Confidence            99999999998 8999999999999884  76332 333            45 6999888764      3346678999


Q ss_pred             cCChHHHHHHHHc-CC-cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCC
Q 005376          368 QLGPAERFLKALV-DI-PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFR  445 (699)
Q Consensus       368 ~L~~aE~Fl~~l~-~I-p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~r  445 (699)
                      .|+++|||+++|+ .| +++..||+||+|+.+|++.+.+|++.|..|..||++|++|+.|++||++||++|||||+|+. 
T Consensus       157 ~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~-  235 (411)
T 1ux5_A          157 DLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK-  235 (411)
T ss_dssp             TBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGG-
T ss_pred             hCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCCCC-
Confidence            9999999999986 79 57899999999999999999999999999999999999999999999999999999999985 


Q ss_pred             cceeeeeccccccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhh
Q 005376          446 GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ  525 (699)
Q Consensus       446 g~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~  525 (699)
                       +|+||+|++|.||.|||++|+++|||||||+.+.++ .                  ++                     
T Consensus       236 -~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~-~------------------p~---------------------  274 (411)
T 1ux5_A          236 -QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN-Y------------------PS---------------------  274 (411)
T ss_dssp             -CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH-C------------------GG---------------------
T ss_pred             -CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh-C------------------cc---------------------
Confidence             799999999999999999999999999999865332 1                  11                     


Q ss_pred             hhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhh-cc---ccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 005376          526 AVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD-MK---NLGENSGFHETLKSFVQNAEGDIMWLLEEE  601 (699)
Q Consensus       526 ~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~-~~---~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~  601 (699)
                       +.+|.+||.+|.+|++||++.|..++.+|.+++.+++..++.. ++   ..++++.|.+.|..|+..|+.++..|.+.+
T Consensus       275 -l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~  353 (411)
T 1ux5_A          275 -FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEV  353 (411)
T ss_dssp             -GGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3468899999999999999999999999999999999887642 11   235678999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCC-ccchhhhcHHHHHHHHHHHHHHHHHHhhhhh
Q 005376          602 KRIMSLVKSTGDYFHGNAG-KDEGLRLFTIVRDFFIMLDKACKQVKDAPKK  651 (699)
Q Consensus       602 ~~~~~~~k~l~~YFged~~-k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr  651 (699)
                      +++.+.|++++.||||+.. +..+++||++|++|+..|++|++|+.+.++.
T Consensus       354 ~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~  404 (411)
T 1ux5_A          354 KLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEE  404 (411)
T ss_dssp             HHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 4578999999999999999999999864443

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1

Probab=100.00  E-value=7.3e-65  Score=547.97  Aligned_cols=316  Identities=30%  Similarity=0.407  Sum_probs=269.3

Q ss_pred             CCCcceeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHH
Q 005376          298 TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERF  375 (699)
Q Consensus       298 ~~~~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~F  375 (699)
                      ++.+.|+|||+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.||...|+++|||
T Consensus         4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF   83 (340)
T 1v9d_A            4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF   83 (340)
T ss_dssp             --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred             CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence            466789999999999999999999999999999999987  499999999999999999999999999999999999999


Q ss_pred             HHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccc
Q 005376          376 LKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT  455 (699)
Q Consensus       376 l~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~s  455 (699)
                      ++.|+.||++..||+||+|+.+|.+.+.+|.+.|.+|..||++|++|+.|++||++||++|||||+|+.||+|+||+|++
T Consensus        84 ~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~s  163 (340)
T 1v9d_A           84 GVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISF  163 (340)
T ss_dssp             HHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CC
T ss_pred             HHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHH
Q 005376          456 LLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELE  535 (699)
Q Consensus       456 L~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~  535 (699)
                      |.||.|||++|+++|||||||+.+.++              +     ++                      +.+|.+||.
T Consensus       164 L~KL~d~Ks~d~k~TLLh~lv~~~~~~--------------~-----p~----------------------l~~f~~eL~  202 (340)
T 1v9d_A          164 LCKLRDTKSADQKMTLLHFLAELCEND--------------H-----PE----------------------VLKFPDELA  202 (340)
T ss_dssp             HHHHHHSBCSSTTSBHHHHHHHHHHHS--------------C-----CT----------------------TSSGGGGCT
T ss_pred             HHhhhhhcCCCCCccHHHHHHHHHHHh--------------C-----ch----------------------hccchhHHH
Confidence            999999999999999999999865432              1     11                      346889999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005376          536 NVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYF  615 (699)
Q Consensus       536 ~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YF  615 (699)
                      +|.+|++||++.|..++.+|.+++..++..++...+..++++.|.++|..|+..|+.++..|...++++.+.|++++.||
T Consensus       203 ~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf  282 (340)
T 1v9d_A          203 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF  282 (340)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988876544445667899999999999999999999999999999999999999


Q ss_pred             cCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376          616 HGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK  654 (699)
Q Consensus       616 ged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k  654 (699)
                      |+|+.+..+++||++|++|+.+|++||+|+.+.++.+++
T Consensus       283 ged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e~eek  321 (340)
T 1v9d_A          283 VFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEK  321 (340)
T ss_dssp             TCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999886655543

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=97.17  E-value=0.00011  Score=58.02  Aligned_cols=31  Identities=26%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             CCcccccccCCCCCCCcCCCCCCCCCCCCCC
Q 005376           79 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN  109 (699)
Q Consensus        79 ~~k~~k~g~~~~~~~~~~~~~~~~~~~~~~~  109 (699)
                      ++|++|.+|+.|++|.|+.||||++++||+.
T Consensus         1 ~~k~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~   31 (59)
T 1cee_B            1 KKKISKADIGAPSGFKHVSHVGWDPQNGFDV   31 (59)
T ss_dssp             CCCCCTTTSCCCCCCEEEEEECCCTTTCCCC
T ss_pred             CCCCCCCcccCCCCCCCcceeccCCCCCccc
Confidence            4689999999999999999999999999864

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=93.07  E-value=0.012  Score=41.50  Aligned_cols=22  Identities=18%  Similarity=-0.079  Sum_probs=20.1

Q ss_pred             ccCCCCCCCcCCCCCCCCCCCC
Q 005376           86 DIGKFDGTASFGAVGGTAKSFN  107 (699)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~~~  107 (699)
                      +|+.|++|+|+.||||++++|+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~   22 (36)
T 2qme_I            1 EISLPSDFEHTIHVGFDAVTGE   22 (36)
T ss_dssp             CBCCCEEEEEEEEECCBTTTTB
T ss_pred             CCcCCCCCCCeeEcccCCCCCc
Confidence            4788999999999999999985

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=92.46  E-value=0.033  Score=44.61  Aligned_cols=20  Identities=15%  Similarity=0.094  Sum_probs=17.7

Q ss_pred             CCCCcCCCCCCCCCCCCCCC
Q 005376           91 DGTASFGAVGGTAKSFNENG  110 (699)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~  110 (699)
                      ++|+|+.|||||+++||+..
T Consensus         2 tnF~Hv~HVG~D~~tGf~~~   21 (65)
T 2lnh_A            2 SNFQHIGHVGWDPNTGFDLN   21 (65)
T ss_dssp             CCCSSCCSCCEETTTEECGG
T ss_pred             CCCEeeeeeeeCCCCCcCCc
Confidence            68999999999999998654

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=90.88  E-value=0.018  Score=40.41  Aligned_cols=22  Identities=9%  Similarity=-0.167  Sum_probs=19.9

Q ss_pred             ccCCCCCCCcCCCCCCCCCCCC
Q 005376           86 DIGKFDGTASFGAVGGTAKSFN  107 (699)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~~~  107 (699)
                      +|+.|++|+|+.|||||+++|+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~   22 (35)
T 2odb_B            1 EISAPQNFQHRVHTSFDPKEGK   22 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTE
T ss_pred             CCcCCCCCcCeeeeeECCCCCc
Confidence            4788999999999999999883

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=89.93  E-value=0.12  Score=45.44  Aligned_cols=13  Identities=15%  Similarity=0.320  Sum_probs=7.2

Q ss_pred             hhccCCCCCCCCC
Q 005376          686 TERRVEDFSSDEE  698 (699)
Q Consensus       686 ~~r~~~~~~~~~~  698 (699)
                      ++|-++||++|||
T Consensus        92 r~~~i~s~~e~~~  104 (107)
T 1ej5_A           92 RSRAIHSSDEGED  104 (107)
T ss_dssp             GSSCCCCCCSSCC
T ss_pred             HhhcccCCCcccc
Confidence            3445666665554

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=89.92  E-value=0.038  Score=46.18  Aligned_cols=25  Identities=20%  Similarity=-0.016  Sum_probs=17.0

Q ss_pred             cccccCCCCCCCcCCCCCCCCCCCC
Q 005376           83 EKLDIGKFDGTASFGAVGGTAKSFN  107 (699)
Q Consensus        83 ~k~g~~~~~~~~~~~~~~~~~~~~~  107 (699)
                      .|.+|+.|++|+|+.||||++.+|+
T Consensus         2 ~~~~Is~Ptnf~H~~HVg~D~~tG~   26 (80)
T 1f3m_A            2 ERPEISLPSDFEHTIHVGFDAVTGE   26 (80)
T ss_dssp             -------CCSSEEEEEEEEETTTTE
T ss_pred             CCCccCCCCCCCCeeecccCCCCCc
Confidence            4678999999999999999999885

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=89.61  E-value=0.029  Score=39.28  Aligned_cols=21  Identities=10%  Similarity=-0.100  Sum_probs=19.3

Q ss_pred             ccCCCCCCCcCCCCCCCCCCC
Q 005376           86 DIGKFDGTASFGAVGGTAKSF  106 (699)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~~  106 (699)
                      +|++|++|+|+.||||++++|
T Consensus         1 ~IS~Ptnf~H~~Hvg~d~~tg   21 (35)
T 2ov2_I            1 EISAPSNFEHRVHTGFDQHEQ   21 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTT
T ss_pred             CCcCCCCCcCeeeeeeCCCCC
Confidence            478899999999999999888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	699
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	7e-85
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	1e-78
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	5e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	4e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.002
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.003
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.002
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.002
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.004

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  268 bits (687), Expect = 7e-85
 Identities = 95/361 (26%), Positives = 148/361 (40%), Gaps = 43/361 (11%)

Query: 301 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELK 358
           + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   
Sbjct: 2   KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKM 61

Query: 359 LRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKE 418
           L     E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+E
Sbjct: 62  LSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 121

Query: 419 LRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQE 478
           LR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ + 
Sbjct: 122 LRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 479 IIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVK 538
                                                           V     EL +V+
Sbjct: 182 CENDHP-----------------------------------------EVLKFPDELAHVE 200

Query: 539 KAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLL 598
           KA+ + A++L  ++ ++   +      +        E   F E + SFV++A+     L 
Sbjct: 201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLR 260

Query: 599 EEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK 658
                + +L K  GDYF  +  K      F  + +F  M  +A K+ +   +   K  + 
Sbjct: 261 MMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRA 320

Query: 659 E 659
           +
Sbjct: 321 K 321

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  255 bits (651), Expect = 1e-78
 Identities = 73/444 (16%), Positives = 133/444 (29%), Gaps = 85/444 (19%)

Query: 239 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKK 292
           P  KLK   W+K+    DNS +W   K+  F      +     +E  F   E      K+
Sbjct: 5   PHKKLKQLHWEKL-DCTDNS-IWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 293 GSSLDTGPQYIQIIDQKKAQNLSIMLRAL-NVTLEEVCDALLEGNE-------------- 337
                   Q I  + +  +Q   I L    ++++ ++   +L  +               
Sbjct: 63  KED----LQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSK 118

Query: 338 --LPAELIQTLLKMAPTAEEELKLRLF------NGELSQLGPAERFLKALV--DIPFSFK 387
             +    +      AP + +   +R          + + L  A++    L+     +   
Sbjct: 119 SEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGS 178

Query: 388 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGG 447
           R+ AL  + + + E +        ++ A   L+ S     +   +L  GN MND      
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT--SKQ 236

Query: 448 AQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLE 507
           AQ FKL TL +L+ +K      T L++V + +                            
Sbjct: 237 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRL-------------------NYPSFN- 276

Query: 508 ETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 567
                                   SELE V     +  + L         +++     + 
Sbjct: 277 ---------------------DFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVE 315

Query: 568 T----DMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KD 622
                D                 +  A      L +E K  +   +S    +  ++G K 
Sbjct: 316 IGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKF 375

Query: 623 EGLRLFTIVRDFFIMLDKACKQVK 646
             +  F    DF     KA  Q  
Sbjct: 376 AKISFFKKFADFINEYKKAQAQNL 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	699
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	100.0
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	92.96

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-63  Score=542.77  Aligned_cols=367  Identities=19%  Similarity=0.249  Sum_probs=316.7

Q ss_pred             CCCCCCCCcccccccccCCCCcccccccccCcc------cccHHHHHHHhccccccccccccCCCCCCCCcceeecChHH
Q 005376          237 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKK  310 (699)
Q Consensus       237 ~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~------~~d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~kr  310 (699)
                      .+|+.+||+|||++|+  ..++|||+.+.+..+      .+|++.||++|+.+.......++    .+..+.++|||.||
T Consensus         3 PkP~~klK~l~W~ki~--~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~----~~~~~~~~lLd~kr   76 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLD--CTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR----KEDLQKITFLSRDI   76 (411)
T ss_dssp             CCCSSCBCCCCCCCCS--SCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHH----HHTTTSBCCSCHHH
T ss_pred             CCCCCCCCCCCceeCC--CCCCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCCCcccc----cccccccccCcHHH
Confidence            3588899999999995  357899999876432      46778899999876543322111    12446789999999


Q ss_pred             HhhHHHHHHhc-CCCHHHHHHHhhcCCC--CcHHHHHH--------------HHhcCCCHHHHHHHHhhc------cccc
Q 005376          311 AQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAELIQT--------------LLKMAPTAEEELKLRLFN------GELS  367 (699)
Q Consensus       311 aqni~I~L~~l-~~s~~ei~~al~~~~~--L~~e~l~~--------------Ll~~~Pt~eE~~~l~~~~------~d~~  367 (699)
                      +|||+|+|++| ++++++|++||.++|.  |+.+.+..              |.+++||.+|+..|+.|.      ||.+
T Consensus        77 ~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~  156 (411)
T d1ux5a_          77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPN  156 (411)
T ss_dssp             HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCST
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhccccCChh
Confidence            99999999999 7999999999999873  66666644              558999999999998885      7889


Q ss_pred             cCChHHHHHHHHc--CCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCC
Q 005376          368 QLGPAERFLKALV--DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFR  445 (699)
Q Consensus       368 ~L~~aE~Fl~~l~--~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~r  445 (699)
                      .|+.+|||+++|+  .|+++..||+||+|+.+|.+.+.++.+.+..+..||++|++|+.|+.||++||++|||||+|+  
T Consensus       157 ~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~--  234 (411)
T d1ux5a_         157 DLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--  234 (411)
T ss_dssp             TBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG--
T ss_pred             hcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcCCC--
Confidence            9999999999987  499999999999999999999999999999999999999999999999999999999999985  


Q ss_pred             cceeeeeccccccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhh
Q 005376          446 GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ  525 (699)
Q Consensus       446 g~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~  525 (699)
                      |+|+||+|++|.||.|+|++|+++|||||||+.+.+..                   .+                     
T Consensus       235 ~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~-------------------p~---------------------  274 (411)
T d1ux5a_         235 KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNY-------------------PS---------------------  274 (411)
T ss_dssp             GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHC-------------------GG---------------------
T ss_pred             CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHhC-------------------cH---------------------
Confidence            57999999999999999999999999999998765421                   11                     


Q ss_pred             hhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhc----cccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 005376          526 AVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDM----KNLGENSGFHETLKSFVQNAEGDIMWLLEEE  601 (699)
Q Consensus       526 ~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~----~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~  601 (699)
                       +..|.+||..|.+|++++++.|..++.+|.+++.+++..++...    .....+++|..+|..|++.|+.++..|...+
T Consensus       275 -l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~  353 (411)
T d1ux5a_         275 -FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEV  353 (411)
T ss_dssp             -GGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhccHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23577899999999999999999999999999999998875422    1234568899999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCc-cchhhhcHHHHHHHHHHHHHHHHHHhhhhhh
Q 005376          602 KRIMSLVKSTGDYFHGNAGK-DEGLRLFTIVRDFFIMLDKACKQVKDAPKKS  652 (699)
Q Consensus       602 ~~~~~~~k~l~~YFged~~k-~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~  652 (699)
                      +++.+.|++++.||||+... ..+++||++|.+|+..|++|++|+.+.++++
T Consensus       354 ~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~~e~e  405 (411)
T d1ux5a_         354 KLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE  405 (411)
T ss_dssp             HHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998864 5788999999999999999999987655443

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-61  Score=513.26  Aligned_cols=312  Identities=30%  Similarity=0.412  Sum_probs=268.5

Q ss_pred             cceeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHH
Q 005376          301 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA  378 (699)
Q Consensus       301 ~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~  378 (699)
                      +.|+|||+||+|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|++|.||.+.|+++|+|+++
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~   81 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV   81 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHHHH
T ss_pred             ceeEeccHHHHHHHHHHHhhCCcCHHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHHHHHHHHhcCChhhcChHHHHHHH
Confidence            569999999999999999999999999999999886  499999999999999999999999999999999999999999


Q ss_pred             HcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccc
Q 005376          379 LVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLK  458 (699)
Q Consensus       379 l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~K  458 (699)
                      |+.||++..||+||+|+.+|++.++++.+.++++..||++|++|..|+.+|++||++|||||+|+.||+|+||+|++|.|
T Consensus        82 l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~k  161 (332)
T d1v9da_          82 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK  161 (332)
T ss_dssp             HHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcchhccccccccccccCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHH
Q 005376          459 LSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVK  538 (699)
Q Consensus       459 L~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~  538 (699)
                      |.|+|++|+++||||||++.+.+..                   ++                      +..|.+||.+|.
T Consensus       162 L~d~Ks~d~~~tLL~~iv~~~~~~~-------------------p~----------------------l~~~~~eL~~v~  200 (332)
T d1v9da_         162 LRDTKSADQKMTLLHFLAELCENDH-------------------PE----------------------VLKFPDELAHVE  200 (332)
T ss_dssp             HHHSBCSSTTSBHHHHHHHHHHHSC-------------------CT----------------------TSSGGGGCTTHH
T ss_pred             HhhccCCCCCccHHHHHHHHHHHhC-------------------ch----------------------hccchhhhhhHH
Confidence            9999999999999999998764321                   11                      246778999999


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 005376          539 KAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGN  618 (699)
Q Consensus       539 kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged  618 (699)
                      .|++++++.|..++..|.+++..++..++......+++++|...|..|+..|+.++..|...++++.+.|++++.||||+
T Consensus       201 ~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd  280 (332)
T d1v9da_         201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFD  280 (332)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998887655566778899999999999999999999999999999999999999999


Q ss_pred             CCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376          619 AGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST  653 (699)
Q Consensus       619 ~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~  653 (699)
                      ..+..+++||++|.+|+..|++|++|+.+.+++++
T Consensus       281 ~~~~~~~efF~~~~~F~~~~~~a~~e~~~~~~~~~  315 (332)
T d1v9da_         281 PKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEE  315 (332)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99889999999999999999999999976554443

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.018  Score=48.38  Aligned_cols=16  Identities=19%  Similarity=0.083  Sum_probs=7.2

Q ss_pred             CCCcCCCCCCCCCCCC
Q 005376           92 GTASFGAVGGTAKSFN  107 (699)
Q Consensus        92 ~~~~~~~~~~~~~~~~  107 (699)
                      +|+|+.|||||+++||
T Consensus         2 nF~Hv~HVG~D~~tGf   17 (107)
T d1ej5a_           2 GFKHVSHVGWDPQNGF   17 (107)
T ss_dssp             CCCCCCCCCCBTTTBC
T ss_pred             CCeeeeeeeecCCCCc
Confidence            3444444444444444