Citrus Sinensis ID: 005387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
MAETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
ccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccEEEHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHccHHcccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHEEEEEcccccccEEEEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
maetevskkrkrpIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVlakntyisenalmpgsassmlsnQEVSEANKLIKELNnlhsnplgatteSHGIIAKYMSNlgaqvnnhkfhpqlnqfhplhffsgpdsgvmqenstrslygintvgiiraprgdgkeAIVLVTpynavkggVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVadsqygeyapvaawlrdyhtpafsnldslntetchvgnnnfeskisygIRRSGTMAAALVLGVAygnenedtLGIYaeasngqmpnldlINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKtlnpdwklgISAADYVEGAATLASSLYHqalgvptgphgafrdyQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKtldlnptsekdksatsneLGSVLQSWKWLNSVKTVFVVHFWGATVSLLpyfisqipdsdpttnFSVWILLSILSLEILRWILVspsshiyglpqgewatlksaTISSFFIGLGLMSVINFATAEIGALLMVPMALMahplkldvRGQSLRSILRMICNLVLgvisfppatfFVFKGViegfsginagdFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
maetevskkrkrpivRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGiiraprgdgkEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLnptsekdksatsnELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
MAETEVSKKRKRPIvrlavlllshsvlvsvICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFallvaplpvvaaSLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVwillsilsleilrwilVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
************PIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISE***************************************ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSG**********TRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDL***************GSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLH**
**************VRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELN**************GIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFS***********VGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISF*RLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDL*****************VLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
**********KRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNP*************GSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
*********RKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN*NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLD*******************LQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MAETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query699 2.2.26 [Sep-21-2011]
Q9WTK3621 Glycosylphosphatidylinosi yes no 0.742 0.835 0.257 4e-31
O43292621 Glycosylphosphatidylinosi yes no 0.746 0.840 0.252 8e-28
Q9US48581 GPI transamidase componen yes no 0.515 0.619 0.247 9e-25
P39012614 GPI transamidase componen yes no 0.499 0.568 0.267 2e-24
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3 Back     alignment and function desciption
 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 158/613 (25%), Positives = 264/613 (43%), Gaps = 94/613 (15%)

Query: 10  RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
           R+R + R+ + L   +  + V+   AG+  F  L  P L + TY+SENA+     S+M+ 
Sbjct: 9   RRRALARIVLRL---NTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAM----GSTMVE 61

Query: 68  NQEV--SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPL 125
            Q V    A    ++       P GA   +   + + M ++G +V    F  +L    P 
Sbjct: 62  EQFVGGDRARSFARDFAAHRKKP-GALPVAW--LERSMRSVGLEVYTQSFSRKL----PF 114

Query: 126 HFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGI 185
                PD    + +    + G N  GI+RAPR    E++VL  P          + ++G+
Sbjct: 115 -----PD----ETHERYMVSGTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162

Query: 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245
             ++ +      + AKDII+LV D    +     AWL  YH    + + S   +      
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYHDINVTGIQSSPLQG----- 214

Query: 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAV 305
                       R+G + AA+ L ++  ++   +L +  E  NGQ+PNLDL+N+      
Sbjct: 215 ------------RAGAIQAAVALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC- 259

Query: 306 HRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLAS 365
            + GL   ++                     GK+      DW    S    ++G  TL  
Sbjct: 260 QKGGLLCTLQ---------------------GKLQPQ---DWT---SLEGPLQGLQTLLL 292

Query: 366 SLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVN 425
            +  QA G P GPHG F  Y V+A+TL        +   +    L   G+ +EG+ R +N
Sbjct: 293 MVLRQASGRPHGPHGLFLRYGVEALTLR-----GINSFRQYKYDLATVGKALEGMFRKLN 347

Query: 426 NLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 485
           +LLE+ HQSFF YLL + S+FVS+G+YM A   L+  L + A  L+ +        E+  
Sbjct: 348 HLLERLHQSFFFYLLPALSRFVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAG 407

Query: 486 SATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSV----WI 541
            A S     +      L S+    ++      + L  YF+  +     T +F V     +
Sbjct: 408 KAPSPGTPLLPTQGVGLASLTAPLLI---SQAMGLALYFLPVLGQHLATQHFPVAEAEAV 464

Query: 542 LLSILSLEILRWILVSPSSHIYG--LPQGEWATLKSATISSFFIGLGLMSVINFATAEIG 599
           +L++L++ +    L   +  +    +P   W  LK   +    + LG ++++NF+   + 
Sbjct: 465 VLTLLAIYVAGLALPHNTHRVVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLL 524

Query: 600 ALLMVPMALMAHP 612
           A  MVP A +A P
Sbjct: 525 AATMVPAAALAKP 537
Essential for GPI-anchoring of precursor proteins but not for GPI synthesis. Acts before or during formation of the carbonyl intermediate.
Mus musculus (taxid: 10090)
>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3 Back     alignment and function description
>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1 Back     alignment and function description
>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
224060139716 predicted protein [Populus trichocarpa] 0.995 0.972 0.673 0.0
356511698705 PREDICTED: glycosylphosphatidylinositol 0.982 0.974 0.639 0.0
356573335707 PREDICTED: glycosylphosphatidylinositol 0.989 0.978 0.632 0.0
357520045701 GPI transamidase component gaa1 [Medicag 0.972 0.970 0.640 0.0
359488887701 PREDICTED: glycosylphosphatidylinositol 0.978 0.975 0.646 0.0
296087611690 unnamed protein product [Vitis vinifera] 0.969 0.982 0.649 0.0
449483788714 PREDICTED: glycosylphosphatidylinositol 1.0 0.978 0.642 0.0
449450074714 PREDICTED: LOW QUALITY PROTEIN: glycosyl 1.0 0.978 0.641 0.0
147783377 1027 hypothetical protein VITISV_026168 [Viti 0.951 0.647 0.641 0.0
297812099699 hypothetical protein ARALYDRAFT_488797 [ 0.965 0.965 0.594 0.0
>gi|224060139|ref|XP_002300056.1| predicted protein [Populus trichocarpa] gi|222847314|gb|EEE84861.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/713 (67%), Positives = 569/713 (79%), Gaps = 17/713 (2%)

Query: 3   ETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSA 62
           ET+  K + RPIVRL + L+SHS+LVSV+CCTAGV  LLLLP+LAK+TYISENALMPGSA
Sbjct: 5   ETDTPKMKPRPIVRLGIFLISHSLLVSVVCCTAGVLALLLLPLLAKSTYISENALMPGSA 64

Query: 63  SSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQF 122
           SSM+SN+++SEAN+L  +L+ L+  P  A     GI+ KYMS+LGA+V+ HKFH + NQF
Sbjct: 65  SSMISNRDISEANRLASDLSGLNFEPQDAAA-FRGILTKYMSDLGAEVSYHKFHHKPNQF 123

Query: 123 HPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLS 182
           HPLHFFS PDS    +N + S +G+NTVGIIRAPRGDGKEAIVLVTPY   K G  ETLS
Sbjct: 124 HPLHFFSSPDSTSSVKNFSCSAHGVNTVGIIRAPRGDGKEAIVLVTPYKFGKSGAAETLS 183

Query: 183 LGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCH 242
           L IAY+VFSLL+RVTWLAKDIIW VADSQYGEYAPV AWLRDYHTP F+ L +LN +TC 
Sbjct: 184 LSIAYTVFSLLSRVTWLAKDIIWFVADSQYGEYAPVEAWLRDYHTPVFTGLGTLNADTCV 243

Query: 243 VGNNNF--------ESKISYGIRRSGTMAAALVLGVAYGNEN-EDTLGIYAEASNGQMPN 293
             ++ +        + KIS G RR+GTMAAAL+L VA  NE  EDTL IYAEASNGQMPN
Sbjct: 244 KIDDLYVFEQKSIVQRKISDGFRRAGTMAAALILKVADRNELLEDTLNIYAEASNGQMPN 303

Query: 294 LDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISA 353
           LDLINIV+YLAVHRQGLRVKVE+   LL+ +W++ LGE+FE LGK+ ++LNP WK GISA
Sbjct: 304 LDLINIVNYLAVHRQGLRVKVEKVLTLLDLRWLEILGEMFELLGKVARSLNPGWKFGISA 363

Query: 354 ADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHG 413
           ADY+EG+ATLASSLY+QALG+PTGPHGAFRD+QVDAITLE S ++      R N+FLL G
Sbjct: 364 ADYIEGSATLASSLYYQALGIPTGPHGAFRDFQVDAITLEISPKVFPHNKARHNEFLLRG 423

Query: 414 GRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAK 473
           GRL+EGVIRS+NNLLEKFHQSFFLY+LTSPSKFVSVGVYMIAFALLVAPLP+VAASLYA 
Sbjct: 424 GRLVEGVIRSINNLLEKFHQSFFLYMLTSPSKFVSVGVYMIAFALLVAPLPLVAASLYAD 483

Query: 474 T--LDLNPTSEKD--KSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIP 529
              LDL   + K    +  S+EL    +SWKWL + K VF++H WGA VSLLPYFI QIP
Sbjct: 484 ANQLDLGVKNTKSTPTATASDELDITFRSWKWLYAAKEVFLIHVWGAAVSLLPYFICQIP 543

Query: 530 DSDPTTNFSVWILLSILSLEILRWILVSPSSHI-YGLPQ--GEWATLKSATISSFFIGLG 586
           +  PT++  +W+ LS+LSL IL  I+ SPS+H+    P+  GEWA LKSATIS+ FIGL 
Sbjct: 544 NCSPTSSSVIWVFLSMLSLLILYLIVGSPSTHVSISQPEEKGEWAILKSATISAVFIGLL 603

Query: 587 LMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFV 646
           +MSV+NFA AEIGALL+VPM LMA PLKLD++   LRS LR+ICN+VLG ++FPPA FFV
Sbjct: 604 VMSVVNFAAAEIGALLLVPMCLMAQPLKLDMKAGKLRSFLRIICNVVLGFVAFPPAAFFV 663

Query: 647 FKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC 699
            K + EGF  IN GDFWNW+ESLWAWNSATY+YIGMVHLPCWVLC+ ILLH C
Sbjct: 664 VKTIFEGFDSINMGDFWNWMESLWAWNSATYIYIGMVHLPCWVLCLHILLHSC 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356511698|ref|XP_003524560.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356573335|ref|XP_003554817.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|357520045|ref|XP_003630311.1| GPI transamidase component gaa1 [Medicago truncatula] gi|355524333|gb|AET04787.1| GPI transamidase component gaa1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359488887|ref|XP_002274196.2| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087611|emb|CBI34867.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449483788|ref|XP_004156691.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450074|ref|XP_004142789.1| PREDICTED: LOW QUALITY PROTEIN: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147783377|emb|CAN59886.1| hypothetical protein VITISV_026168 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297812099|ref|XP_002873933.1| hypothetical protein ARALYDRAFT_488797 [Arabidopsis lyrata subsp. lyrata] gi|297319770|gb|EFH50192.1| hypothetical protein ARALYDRAFT_488797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query699
TAIR|locus:2182197699 AT5G19130 "AT5G19130" [Arabido 0.961 0.961 0.568 5.2e-200
DICTYBASE|DDB_G0287287752 DDB_G0287287 "Glycosylphosphat 0.118 0.110 0.489 5.9e-35
FB|FBgn0029818674 CG3033 [Drosophila melanogaste 0.148 0.154 0.380 6e-31
UNIPROTKB|G4N7S2606 MGG_03523 "GPI transamidase co 0.130 0.150 0.414 2.9e-28
ASPGD|ASPL0000014407631 AN10439 [Emericella nidulans ( 0.128 0.142 0.387 3.5e-27
UNIPROTKB|Q6PA87615 gpaa1 "MGC68658 protein" [Xeno 0.447 0.508 0.240 1.1e-24
MGI|MGI:1202392621 Gpaa1 "GPI anchor attachment p 0.417 0.470 0.277 7.1e-24
UNIPROTKB|E2REN2621 GPAA1 "Uncharacterized protein 0.420 0.473 0.272 3.3e-23
UNIPROTKB|Q6AYM8621 Gpaa1 "Glycosylphosphatidylino 0.420 0.473 0.269 4e-23
UNIPROTKB|Q58CZ3568 GPAA1 "Uncharacterized protein 0.412 0.507 0.267 5.1e-22
TAIR|locus:2182197 AT5G19130 "AT5G19130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1936 (686.6 bits), Expect = 5.2e-200, P = 5.2e-200
 Identities = 397/698 (56%), Positives = 482/698 (69%)

Query:     8 KKRKRPIXXXXXXXXXXXXXXXXICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLS 67
             K + RPI                +   AGV  LLLLP+LAKNTYISENALMPGSA SMLS
Sbjct:    20 KIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLS 79

Query:    68 NQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHF 127
             N++VS+ +KL+K++ N   N  G   E   +I KYMS++GA+V+  KFHP+ NQFHPLHF
Sbjct:    80 NRDVSDGSKLVKDIKNFRLNHEGQGVEVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHF 139

Query:   128 FSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAY 187
             FSGPDS  + EN + + YG+N  GIIRAPRGDGKE+IVLVTPY+ + GG  E LSLGI  
Sbjct:   140 FSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVS 199

Query:   188 SVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNN 247
             S+FSLL+RVTWL+KDIIWLVADS+YG+Y PVAAWL +YH+P+F   D L  +  +  +N 
Sbjct:   200 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADN- 258

Query:   248 FESKISYGIRRSGTMAAALVLGVAYGNEN-EDTLGIYAEASNGQMPNLDLINIVHYLAVH 306
                      RR+GTMAAALVL V   +E  EDTL IYAEASNGQMPNLDLIN+V+YLAVH
Sbjct:   259 --------FRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVH 310

Query:   307 RQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASS 366
             RQG  VKVE+   LL+S W+K  GE+FE++GK+   LNPDW  GI AADY+EG+ATLASS
Sbjct:   311 RQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASS 370

Query:   367 LYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNN 426
             LY QALG+PTGPHGAFRDYQVDAITL+ S R   D   R++DF L G RL+EG IRSVNN
Sbjct:   371 LYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVNN 430

Query:   427 LLEKFHQSFFLYLLTSPSKFVSVGVYMIAFXXXXXXXXXXXXSLYAKTLDLNPTSEKDKS 486
             LLEKFHQSFFLY+LTSPSKF+SVGVYMIAF            SLY         +    +
Sbjct:   431 LLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYID--GCKSLTNSTHN 488

Query:   487 ATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVXXXXXXX 546
              T N      +SWKWL++ K VF +H  G  V+LLPYFI Q+P     TN S+       
Sbjct:   489 PTEN-----FKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSS 543

Query:   547 XXXXXXXXXV---SP-SSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALL 602
                      +   SP SS ++G     WA LKS TIS+ FIGL LMS+INFATAEIGALL
Sbjct:   544 SLLLITFVTMPGCSPFSSRLHGT---NWAILKSVTISAAFIGLCLMSIINFATAEIGALL 600

Query:   603 MVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVI-EGFSGIN-AG 660
             +VP  LMA P+K  +R + L+S+L   C++VL  I FP   F + KG++ EG  G++  G
Sbjct:   601 LVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGG 660

Query:   661 DFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHP 698
             +FW W+ESLWAW SATYLYIGMVHLPCW+LC+ IL HP
Sbjct:   661 EFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHP 698
GO:0003923 "GPI-anchor transamidase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0042765 "GPI-anchor transamidase complex" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0287287 DDB_G0287287 "Glycosylphosphatidylinositol anchor attachment 1 protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0029818 CG3033 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G4N7S2 MGG_03523 "GPI transamidase component GAA1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014407 AN10439 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PA87 gpaa1 "MGC68658 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1202392 Gpaa1 "GPI anchor attachment protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2REN2 GPAA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AYM8 Gpaa1 "Glycosylphosphatidylinositol anchor attachment protein 1 homolog (Yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CZ3 GPAA1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.2574.1
hypothetical protein (709 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.III.2151.1
hypothetical protein (667 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_III1551
SubName- Full=Putative uncharacterized protein; (230 aa)
     •  0.899
gw1.I.9112.1
hypothetical protein (356 aa)
     •  0.800
gw1.201.52.1
hypothetical protein (375 aa)
     •  0.800
grail3.0072000901
hypothetical protein (515 aa)
     •  0.800
estExt_fgenesh4_pm.C_LG_II1135
hypothetical protein (584 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
pfam04114498 pfam04114, Gaa1, Gaa1-like, GPI transamidase compo 1e-47
>gnl|CDD|217905 pfam04114, Gaa1, Gaa1-like, GPI transamidase component Back     alignment and domain information 
 Score =  175 bits (445), Expect = 1e-47
 Identities = 136/571 (23%), Positives = 224/571 (39%), Gaps = 105/571 (18%)

Query: 145 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDII 204
           YG N  GI+RAPRGD  E++VL  P+            + +  S+     R  + +KDII
Sbjct: 2   YGENLYGILRAPRGDSTESLVLAVPWFNSDSETNSA-GVALLLSLARFFRRWPYWSKDII 60

Query: 205 WLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAA 264
           +++ ++       + +WL  YH      +     +                  R+G++ A
Sbjct: 61  FVITEN---PRLGLRSWLEAYHDSTTPYISYTPLDL-----------------RAGSIQA 100

Query: 265 ALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSK 324
           A+VL ++   +  + + +  E  NGQ+PNLDL N+   +  H   ++             
Sbjct: 101 AVVLELSSTEDFSEYVEVSYEGLNGQLPNLDLFNLAQRITEHEGFMKYS----------- 149

Query: 325 WVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 384
            +        S     + L                   L   +  QA    TGPHG F  
Sbjct: 150 -LHLQPSDQHSNSGFWQRLK-----------------ILLLGILDQASSGVTGPHGLFSR 191

Query: 385 YQVDAITLEFS--LRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTS 442
           Y++DA+TL        S D        +   G+ IEG+ RS+NNLLE+FHQSFF YLL +
Sbjct: 192 YRIDALTLRMKAHGNSSHD--------ITAFGKAIEGMFRSLNNLLERFHQSFFFYLLLA 243

Query: 443 PSKFVSVGVYMIAFALLVAPLPVVA----ASLYAKTLDLNPTSEKDKSATSNELGSVLQS 498
           P +FVS+G YM +   L A   + A     +L+   + L   S     A    L S++ S
Sbjct: 244 PRRFVSIGSYMPSAVALSAAFALKALNAWINLHEANISLE--SPYGLVALLVWLVSLVIS 301

Query: 499 WK----WLNSVKTVFVVHFWGATVSLLP----YFISQIPDSDPTTNFSVWILLSILSLEI 550
           +     +L+    + +    GA+  +L      F      S    N    + LS++S   
Sbjct: 302 FVVSLAFLSIPAYLLLSTISGASCFVLLILSQKFHIIEFLSARLKN-VALLYLSLVST-- 358

Query: 551 LRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMA 610
                        GL    +A L    + +F + L ++ ++NF+   + A L VP+A   
Sbjct: 359 -------------GLLLPNFAMLLLIGLLAFPLTLVVIILLNFSLGFVTAQLSVPIATEP 405

Query: 611 HP------LKLDVRGQSLRSILRMICNLVLGVISFP--PATFF--VFKGVIEGFSGINAG 660
                     + +   +L    + +  LVL +++ P  P T F          F  +  G
Sbjct: 406 KDENERVENHMTLTPATLVQQSQKLKLLVLLILTNPFIPETPFGLFADDEFLFFDALAKG 465

Query: 661 DFWNWVESLWAWNSATYLYIGMVHLPCWVLC 691
                    W +       + +  LPCW+L 
Sbjct: 466 VSAWLDLGCWLF-----FVLCIGFLPCWLLI 491

GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesised proteins. Length = 498

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 699
KOG3566617 consensus Glycosylphosphatidylinositol anchor atta 100.0
PF04114504 Gaa1: Gaa1-like, GPI transamidase component ; Inte 100.0
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 98.47
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 96.79
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 96.68
PRK06133410 glutamate carboxypeptidase; Reviewed 96.18
TIGR01883361 PepT-like peptidase T-like protein. This model rep 95.87
PRK08596421 acetylornithine deacetylase; Validated 95.84
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 95.84
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 95.62
PRK09133472 hypothetical protein; Provisional 95.43
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 95.36
PRK12890414 allantoate amidohydrolase; Reviewed 95.21
PRK12891414 allantoate amidohydrolase; Reviewed 95.04
PRK12892412 allantoate amidohydrolase; Reviewed 94.99
PRK09290413 allantoate amidohydrolase; Reviewed 94.87
PRK05111383 acetylornithine deacetylase; Provisional 94.64
PRK12893412 allantoate amidohydrolase; Reviewed 94.42
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 94.33
PRK07906426 hypothetical protein; Provisional 94.32
PRK08652347 acetylornithine deacetylase; Provisional 94.18
PRK07522385 acetylornithine deacetylase; Provisional 94.05
TIGR01893477 aa-his-dipept aminoacyl-histidine dipeptidase. 93.92
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 93.85
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 93.79
PRK13013427 succinyl-diaminopimelate desuccinylase; Reviewed 93.73
PRK07473376 carboxypeptidase; Provisional 93.56
PRK13983400 diaminopimelate aminotransferase; Provisional 93.38
TIGR01882410 peptidase-T peptidase T. This model represents a t 93.3
PRK13381404 peptidase T; Provisional 92.95
PRK06446436 hypothetical protein; Provisional 92.9
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 92.53
PRK08262486 hypothetical protein; Provisional 92.47
PRK13004399 peptidase; Reviewed 92.22
PLN02693437 IAA-amino acid hydrolase 92.19
PRK07907449 hypothetical protein; Provisional 92.01
PRK06837427 acetylornithine deacetylase; Provisional 91.84
PRK07338402 hypothetical protein; Provisional 91.83
PRK06915422 acetylornithine deacetylase; Validated 91.74
PRK09104464 hypothetical protein; Validated 91.49
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 91.48
PRK05469408 peptidase T; Provisional 90.93
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 90.91
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 90.49
PRK07205444 hypothetical protein; Provisional 90.36
PRK00466346 acetyl-lysine deacetylase; Validated 90.24
PRK04443348 acetyl-lysine deacetylase; Provisional 90.19
PRK08201456 hypothetical protein; Provisional 89.63
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 89.41
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 89.39
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 89.2
TIGR01891363 amidohydrolases amidohydrolase. This model represe 88.89
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 88.28
PRK15026485 aminoacyl-histidine dipeptidase; Provisional 86.87
TIGR03526395 selenium_YgeY putative selenium metabolism hydrola 86.45
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 86.33
PLN02280478 IAA-amino acid hydrolase 85.47
PRK08554438 peptidase; Reviewed 85.36
PRK07318466 dipeptidase PepV; Reviewed 83.18
TIGR03320395 ygeY M20/DapE family protein YgeY. Members of this 80.54
COG2234435 Iap Predicted aminopeptidases [General function pr 80.54
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-113  Score=939.17  Aligned_cols=602  Identities=34%  Similarity=0.489  Sum_probs=457.5

Q ss_pred             cccccchhHHHHHHHHhhcchhHHHHHHHHHHHHHhcc--cCCcccccccccCCCcceeeeccchhHHHHHHHHHHHHhh
Q 005387            7 SKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLP--VLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNL   84 (699)
Q Consensus         7 ~~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~wll~lP--~~~r~TYiSENALlPG~v~~~f~~~~~~~a~~y~~el~~~   84 (699)
                      ++.|+|+++|+   +.||...++++++++|+.|+++|+  .+.++|||||||||||||++||+..++++++++.+++++.
T Consensus         6 ~~~~~~~~~~l---~~r~ia~lpv~s~v~g~awf~aL~~~pl~~rtyiSEnAlmpg~v~s~~~~~~~~~~~~~~~~~~~~   82 (617)
T KOG3566|consen    6 DPIRQIPLVRL---LIRHIAHLPVFSYVAGLAWFFALALLPLLKRTYISENALMPGQVYSYFRNRDVSDASKLLKDIKNF   82 (617)
T ss_pred             cchhhHHhHHH---HHhhcccchHHHHHHHHHHHHHHhhchhcccceeeccccCccchhhhhhccchhhhHHHHHHHHHH
Confidence            44789999997   667777788888888888888865  4679999999999999999999999999999999999999


Q ss_pred             hcCCCCCccchHHHHHHHHHHcCCceeeeccccCCccCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceeE
Q 005387           85 HSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAI  164 (699)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~l~~f~~~~~~~~~~~~~~~~~G~NvygIlrAPRgdgtEai  164 (699)
                      +. ..+.  .++.|.+..|+++|+|+++|||...                |+     .++.|+|||||+|||||||||+|
T Consensus        83 r~-~~s~--~~~~~~~~~~q~FGl~t~~~n~~~~----------------P~-----e~y~G~NvyGilRAPRgdgtEsi  138 (617)
T KOG3566|consen   83 RK-HESQ--VPNAWAEVSMQEFGLETHTQNYSNG----------------PF-----EEYSGENVYGILRAPRGDGTESI  138 (617)
T ss_pred             HH-hhcc--cchhHHHHHHHHhCccccccCccCC----------------ch-----hhcCCceEEEEEecCCCCCcceE
Confidence            98 4332  5789999999999999999998642                11     14679999999999999999999


Q ss_pred             EEEEeeccCCCCccchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCcccccccccCC
Q 005387          165 VLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVG  244 (699)
Q Consensus       165 VL~ap~~~~~~~~~~~~sval~LaLa~yl~r~~~wAKDIIfl~~D~~~g~~~G~~AWL~aYH~~~~~~~~~~~~~~~~~~  244 (699)
                      ||+|||+..+++ | ..++++++||++|+|||+||||||||||+|+   ++.|++|||++||++..  ...    .+..+
T Consensus       139 vl~vP~~~~~~~-~-~~~v~l~lsla~~f~r~~yWsKDII~v~~d~---~~~g~~AwLeaYhd~~s--~~~----~~~ep  207 (617)
T KOG3566|consen  139 VLVVPYGRSSGS-N-SASVALLLSLADYFSRWVYWSKDIIFVFTDG---PALGLDAWLEAYHDILS--LTG----ISVEP  207 (617)
T ss_pred             EEEEecccCCCc-c-hhHHHHHHHHHHHhcCCeeecccEEEEEeCC---ccccHHHHHHHhhcccc--ccc----ccccc
Confidence            999999887766 4 5699999999999999999999999999998   78999999999999521  111    12211


Q ss_pred             CCCcccccccccccccceeeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHHHhhccCceeeEeecccccchh
Q 005387          245 NNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSK  324 (699)
Q Consensus       245 ~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~ia~~~~g~~~~l~~~~~~~~~~  324 (699)
                              .....|+|+++||+++|+++.  .+|+++|.+||+|||||||||||+...++ +|+|+.+++++..      
T Consensus       208 --------~~i~~ragal~aal~l~~se~--~~d~v~i~~eglNGqlPNLDlf~i~~~~~-~k~g~~v~l~g~~------  270 (617)
T KOG3566|consen  208 --------DEIQARAGALAAALVLEVSEK--FQDIVEIQYEGLNGQLPNLDLFNITQIFM-QKEGLLVTLQGKL------  270 (617)
T ss_pred             --------ccccccccceeeEEEEEeccc--cceeEEEEecccCCCCCcchHHHHHHHHH-HhcCceEEEecCc------
Confidence                    123379999999999999966  67999999999999999999998877666 4899999998632      


Q ss_pred             hhhchhhhHhhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCccccccccccceEEEEeeccccccccc
Q 005387          325 WVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLD  404 (699)
Q Consensus       325 w~~~~~~i~e~~g~~~~~~~p~~~~~~~~~~Y~~~l~tll~~m~~Qa~G~ptG~Hg~F~~Y~IdAiTL~~~~~~~~~~~~  404 (699)
                                        .++||..+   ++|.+++++++.+++.||+|+|||+||+|++|||||+|++...+++.+  .
T Consensus       271 ------------------~~~d~~s~---~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~Y~vdaLTlrr~~~~s~~--~  327 (617)
T KOG3566|consen  271 ------------------LPLDWHSN---SMYLSGLKTLLLMLLTQASGSPTGIHGLFLRYRVDALTLRRILSDSFK--Q  327 (617)
T ss_pred             ------------------CCcccccC---chhhhhHHHHHHHHHHHHhcCCCCccccccccccceEEeccccccccc--c
Confidence                              24556533   489999999999999999999999999999999999999655433222  2


Q ss_pred             cchhhHHhHHHHHHHHHHhhchhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhchHHHHHHHHHhhc--CCCCCCc
Q 005387          405 RRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTL--DLNPTSE  482 (699)
Q Consensus       405 ~~~~~~~~lGr~iE~~~RSlNNLLErlHqSfFfYlL~s~~rFVSIG~Ylpp~~Ll~a~l~i~a~~l~~~~~--~~~~~~~  482 (699)
                      .+++ ++++||++|+++||+||||||||||||||+++++.||||||.|||++.++++|+.++|+.+|.+..  +...++.
T Consensus       328 ~~~d-~~~~gkaiEg~fRsLNNLLEr~HQSFF~YlL~~~~~FiSIg~YMpa~~~Lva~l~l~A~~~wi~l~e~~~~l~~~  406 (617)
T KOG3566|consen  328 YGYD-LVRFGKAIEGMFRSLNNLLERFHQSFFFYLLLDPSRFISIGLYMPALVILVAPLGLKAYFLWINLHEAKIGLESL  406 (617)
T ss_pred             cchH-HHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCccceeehHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccc
Confidence            2233 578999999999999999999999999999999999999999999999999999999999999642  2222221


Q ss_pred             cCcCCCcccccccccccchhhhHHHHHHHHHHHHHHHhHhHHhhccC-CCCCchhHHHHHH-HHHHHHHHHHHHhhCCCc
Q 005387          483 KDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIP-DSDPTTNFSVWIL-LSILSLEILRWILVSPSS  560 (699)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~G~~~~~lp~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~~~~p~~  560 (699)
                      .+  .    .....+.+++.-....+...|+.|..+.++|++..+.. .+.|+.....+.. .+.+..+.+...+.++..
T Consensus       407 ~~--~----~~~~~~~~~~~~~~~~~~~~~L~~~~~~ll~~l~~~~~f~~~p~~~~~~l~~~~s~~~~~~~v~~~~~~v~  480 (617)
T KOG3566|consen  407 AG--H----PYESVPTPVSQDIGLTSVLQWLLGPIVGLLPLLPSQVIFLHIPLGRAIFLVEPLSYLLLIVFVLPFSSLVL  480 (617)
T ss_pred             cC--C----cccccccchhhcccchhhhhhHHHHHHHHHHhhhhhhhhccccccccccccchHHHHhhhheeeccccccc
Confidence            10  0    11111223444455566677777777777776544332 1222222211111 111111111111111111


Q ss_pred             cccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccchhHHHHHHHHHHHHhhhcCc
Q 005387          561 HIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFP  640 (699)
Q Consensus       561 ~~~~~~~~~~~~lk~~~Ll~~~~~l~~la~lNFsLa~~~al~~vPl~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p  640 (699)
                      .  +....+|+++|++.++...+.+++++..||+++++.+++.||+|+++.|.++-.|.+..+..+..-+..++..+..|
T Consensus       481 ~--~~~~~n~~ll~lv~~l~~pi~fi~~~~~nf~~~~~aal~~vp~~i~~~~k~~~~r~~l~p~~l~~~~~~l~~si~~~  558 (617)
T KOG3566|consen  481 P--GLCLTNFALLKLVTILAVPIQFIMTTLSNFASGEFAALLPVPTLIFLEPKIPILRGRLAPLVLQAKWLALVLSIAMT  558 (617)
T ss_pred             c--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhccCCccccccccHHHHhhHHHHHHHHHhcc
Confidence            1  13345899999999999999999999999999999999999999999887766655555555555555554455556


Q ss_pred             hhHH-HHhhhhh-hccccccH-HhHHHHHhhhhhccchhhhhhhhhhHhHHHHHHHHhccC
Q 005387          641 PATF-FVFKGVI-EGFSGINA-GDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHP  698 (699)
Q Consensus       641 ~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~p~w~~~~~~~~~~  698 (699)
                      +.-. .+.+.++ +...+.|. +.++.|-.+.|.|   .|.+++++|+|||++||++.|++
T Consensus       559 ~~~~~~~~~~~~~~~~~gl~~~~~~~s~~~~yg~w---~~~~i~~g~lpcwll~~~~~f~~  616 (617)
T KOG3566|consen  559 AFDEEPLSKHFFLLCFFGLDIWNMLFSCSMRYGAW---LYFVIGTGSLPCWLLCLDGSFKK  616 (617)
T ss_pred             hhhHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhh---hhhheeccccchhheeecccccC
Confidence            4222 2333333 22355555 2455554454555   69999999999999999999986

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query699
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 55/330 (16%), Positives = 105/330 (31%), Gaps = 85/330 (25%)

Query: 319 WLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGP 378
           W L SK  + + + F     + + L  ++K  +S     +   ++ + +Y +        
Sbjct: 69  WTLLSKQ-EEMVQKF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 379 HGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHG----GR--LIEGVIRSVNNLLEKFH 432
           +  F  Y V  +     LR +   L    + L+ G    G+  +   V  S      K  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-----YKVQ 177

Query: 433 QSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVA--ASLYAKTLDLNPTSEKDKSAT-- 488
                             ++ +      +P  V+     L  + +D N TS  D S+   
Sbjct: 178 CKM------------DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIK 224

Query: 489 ------SNELGSVLQSWKWLNSVKTVFVV--HFWGATVSLLPYFISQIPDSDPTTNFSVW 540
                   EL  +L+S  + N +    +V  +   A       F           N S  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKA--WNAF-----------NLSCK 267

Query: 541 ILLSILSLEILRWILVSPSSHIY------GLPQGEWATLKSATISSFFIGLGLMSVINFA 594
           ILL+    ++  ++  + ++HI        L   E                 L+    + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--------------VKSLLL--KYL 311

Query: 595 TAEIGALLMVPM-ALMAHPLKLDVRGQSLR 623
                 L   P   L  +P +L +  +S+R
Sbjct: 312 DCRPQDL---PREVLTTNPRRLSIIAESIR 338

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 99.01
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 98.83
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 98.77
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 98.67
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 98.67
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 98.66
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 98.53
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 98.0
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 97.93
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 97.65
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 97.35
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 96.89
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 96.6
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 96.56
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 96.51
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 96.17
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 96.13
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 96.12
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 96.1
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 96.05
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 95.94
3k9t_A435 Putative peptidase; structural genomics, joint cen 95.94
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 95.76
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 95.69
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 95.49
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 95.43
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 95.32
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 95.24
3kas_A640 Transferrin receptor protein 1; transferrin recept 95.21
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 95.18
3fed_A707 Glutamate carboxypeptidase III; metallopeptidase, 95.13
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 95.0
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 94.79
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 94.65
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 94.65
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 94.59
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 94.58
3mru_A490 Aminoacyl-histidine dipeptidase; metalloprotease, 94.4
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 94.34
1ylo_A348 Hypothetical protein SF2450; structural genomics, 94.09
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 93.71
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 93.58
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 93.26
2qyv_A487 XAA-His dipeptidase; YP_718209.1, structural genom 93.1
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 93.06
1vho_A346 Endoglucanase; structural genomics, unknown functi 92.86
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 92.77
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 92.5
2gre_A349 Deblocking aminopeptidase; structural genomi prote 91.01
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 90.7
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 89.12
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 88.42
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
Probab=99.01  E-value=8.8e-09  Score=108.68  Aligned_cols=114  Identities=13%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             cchHHHHHHHHHHcCCceeeeccccCCccCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceeEEEEEeecc
Q 005387           93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA  172 (699)
Q Consensus        93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~l~~f~~~~~~~~~~~~~~~~~G~NvygIlrAPRgdgtEaiVL~ap~~~  172 (699)
                      ...++||.++|+++|++++.|+|+.+..                 .  .....++||+|.++.   ...|.|||.++||+
T Consensus        32 ~~~~~~i~~~l~~~g~~v~~~~f~~~~~-----------------~--~~~~~~~Nii~~~~~---~~~~~vvl~aHyDs   89 (312)
T 4f9u_A           32 QQVREYLVQSLNGLGFQTEVDEFKQRVP-----------------V--FGELTFANVVGTINP---QAQNFLALACHYDS   89 (312)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEEEET-----------------T--TEEEEEEEEEEEEST---TSSEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeEEEecC-----------------C--CCceeEEEEEEEECC---CCCceEEEEEEEec
Confidence            3578999999999999999999975410                 0  013578999999975   45699999999998


Q ss_pred             CC--------CCccchhhHHHHHHHHHHHhcC------CccccceEEEeeCCCCCC--------chhHHHHHHHhcCC
Q 005387          173 VK--------GGVRETLSLGIAYSVFSLLTRV------TWLAKDIIWLVADSQYGE--------YAPVAAWLRDYHTP  228 (699)
Q Consensus       173 ~~--------~~~~~~~sval~LaLa~yl~r~------~~wAKDIIfl~~D~~~g~--------~~G~~AWL~aYH~~  228 (699)
                      ..        +..+++.|+|.+|-+||.|+..      .--.++|+|++.|+++.+        ..|.++|.+.|...
T Consensus        90 ~~~~~~~~~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~~~L~GS~~~a~~~~~~  167 (312)
T 4f9u_A           90 KYFPNDPGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASK  167 (312)
T ss_dssp             CCCTTCTTCCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSSSSCHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCccccccChHHHHHHHHhh
Confidence            42        4456688999999999998631      224689999999986533        78999999998653
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query699
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 98.99
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 98.71
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 98.53
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 98.23
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 98.2
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 98.16
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 98.05
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 97.83
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 97.83
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 97.43
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 97.41
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 96.23
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 96.16
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 95.62
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 95.5
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 94.24
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 89.36
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 88.63
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=98.99  E-value=1.1e-08  Score=104.16  Aligned_cols=129  Identities=10%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhhhcCCCCC-------ccchHHHHHHHHHHcCCceeeeccccCCccCCCcccccCCCCCccccCCccccc
Q 005387           73 EANKLIKELNNLHSNPLGA-------TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLY  145 (699)
Q Consensus        73 ~a~~y~~el~~~~~~~~~~-------~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~l~~f~~~~~~~~~~~~~~~~~  145 (699)
                      .++++.++|..+.....+.       ....++||.++|+++|+++..|.|+.+                        ...
T Consensus         8 ~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~------------------------~~~   63 (277)
T d1tkja1           8 NVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSG------------------------GAT   63 (277)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEET------------------------TEE
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeecc------------------------Ccc
Confidence            3556666776554332221       124579999999999999999998643                        246


Q ss_pred             cceEEEEEcCCCCCCceeEEEEEeeccCC---CCccchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCCchhHHHH
Q 005387          146 GINTVGIIRAPRGDGKEAIVLVTPYNAVK---GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAW  221 (699)
Q Consensus       146 G~NvygIlrAPRgdgtEaiVL~ap~~~~~---~~~~~~~sval~LaLa~yl~r~~~-wAKDIIfl~~D~~~g~~~G~~AW  221 (699)
                      +.||+|.++.+  +..|.|||.++||+..   +..+++.|++.+|.++|.|++..+ ..|+|+|++.|+++.+..|.++|
T Consensus        64 ~~Nvi~~~~g~--~~~~~i~~~aH~D~~~~~~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~  141 (277)
T d1tkja1          64 GYNLIANWPGG--DPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFY  141 (277)
T ss_dssp             EEEEEEECSCS--EEEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHH
T ss_pred             ccCeEEEECCC--CCCCEEEEEccccccccccccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccccccHHH
Confidence            78999999764  3458899999998754   444567899999999999997655 47899999998877678999999


Q ss_pred             HHHhcC
Q 005387          222 LRDYHT  227 (699)
Q Consensus       222 L~aYH~  227 (699)
                      ++.+..
T Consensus       142 ~~~~~~  147 (277)
T d1tkja1         142 VNNLPS  147 (277)
T ss_dssp             HHHSCH
T ss_pred             HHHhhc
Confidence            987643
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure