Citrus Sinensis ID: 005406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
Protein Sequence
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATSDQIPQKTSNL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccEEEccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHcccccEEEEEEEccccccccccccccccEEEEHHHHHHccccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccHHccccHHHHHHHHccccccccccEEEEcccccEEEEEcccHHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccccccccccccccccHHHHHcccccEEEcccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEcHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHccEEEEcccccccccEEEEEcccccccccccccccccEEEEEEccccccccccccccccEEEEEcccEEEEccccHHHHHHHHcccccEEccccccEccccEEEEEEccccEEEEccccEEccHHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHHEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MEDSSAQRRFKAVQRHLtstntdrcsqldynhttgcfvqsqgysvrlpeklqtgkwnvyrsarspltlvdrfpdhpeigtlhdNFIYAvenypdykylgtrvrvdgtvggyKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGlylinrpewlivdhacsaysyisvplydtlgpdaVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVggkdehlpslpstsgvKLISYLQLqsqgcsspqpfcppkpediaticytsgttgtpkgavlthgnlisnvAGFSLMVqfypsdiymsylpLAHIYERANQIVSVYYGVAVgfyqgdnlkLMDDLavlkptifpsvprlyNRIYAGITNAVKASGTLREKLFTAAYNSKkqaivsgqtpskmWDRLVFNKIRERLggrvrfmgsgasplspdVMDFLKVCFGcqvmegygmteTSCIISAidkgdnlsghvgspnpaceiklvdvpemnytsedqphprgeicvrgpivfqgyyknevqtrevidgdgwlhtgdiglwlpggrlkiiDRKKNIFKLaqgeyvapekIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAasqgikfedlEQLCNDPRARAAVLAEMNAvgkegqlrGFEYAKAvtlmpepfsvenglltptfkikrPQAKERFAKAISNMYAElatsdqipqktsnl
Flexible Loop (DISEMBL)
MEDSSAQRRFKAVqrhltstntdrcsqldYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAaynskkqaivsgqtpskmwdRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYtsedqphprgeiCVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMnavgkegqlRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYaelatsdqipqktsnl
Low Complexity Region (SEG)
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLgtrvrvdgtvggYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATSDQIPQKTSNL
Disordered region (IsUnstruct)
***********************RCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL**TSGVKLISYLQLQ***************EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG**NPACEIKLVDVP*************GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIK********************************
Disordered Region (DISOPRED)
*******************************************************WNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ**********PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN******************
Disordered Region (DISEMBL)
************VQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATSDQIPQKTSNL
Disordered Region (DISPRO)
***************HLTS*****CSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATS**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATSDQIPQKTSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	698	2.2.26 [Sep-21-2011]
Q8LKS5	700	Long chain acyl-CoA synth	yes	no	0.989	0.987	0.751	0.0
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.972	0.968	0.744	0.0
Q9JID6	698	Long-chain-fatty-acid--Co	yes	no	0.859	0.859	0.442	1e-145
P33124	697	Long-chain-fatty-acid--Co	yes	no	0.810	0.812	0.462	1e-144
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.861	0.861	0.434	1e-144
Q9ULC5	683	Long-chain-fatty-acid--Co	no	no	0.815	0.833	0.452	1e-143
Q9UKU0	697	Long-chain-fatty-acid--Co	no	no	0.812	0.813	0.463	1e-142
Q91WC3	697	Long-chain-fatty-acid--Co	yes	no	0.810	0.812	0.453	1e-142
O88813	683	Long-chain-fatty-acid--Co	no	no	0.815	0.833	0.447	1e-141
Q8JZR0	683	Long-chain-fatty-acid--Co	no	no	0.815	0.833	0.446	1e-140

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/695 (75%), Positives = 603/695 (86%), Gaps = 4/695 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
           AAS+GIK+E L QLCNDPR R  VLAEM+ +G+E QLRGFE+AKAVTL+PEPF++ENGLL
Sbjct: 605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLL 664

Query: 660 TPTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           TPTFKIKRPQAK  FA+AIS MYAE+A S+ IP K
Sbjct: 665 TPTFKIKRPQAKAYFAEAISKMYAEIAASNPIPSK 699

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/680 (74%), Positives = 590/680 (86%), Gaps = 1/680 (0%)

Query: 10  FKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLV 69
             A+  HL  T++     L  N T G F    GYSV LPEKL TG WNVYRSA+SP  LV
Sbjct: 16  INAIHSHLV-TSSRSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLV 74

Query: 70  DRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
            RFPDHP+I TLHDNF +AV ++ DYKYLGTRVRVDGTVG YKWMTYGE   AR  +GSG
Sbjct: 75  SRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSG 134

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI 189
           L+ HG+  G  +G+Y INRPEWLIVDHACS+YSY+SVPLYDTLGPDAVK++VNHA ++AI
Sbjct: 135 LVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAI 194

Query: 190 FCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
           FC+ +TLN+LLS +SE+PSV L+VVVGG  E LPSLPS+SGVK++SY  L +QG S+PQ 
Sbjct: 195 FCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQR 254

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           F PPKP+D+ATICYTSGTTGTPKG VLTH NLI+NVAG S  V+F+ SD+Y+SYLPLAHI
Sbjct: 255 FFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHI 314

Query: 310 YERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
           YERANQI++VY+GVAVGFYQGDN+KL+DDLA L+PT+F SVPRLYNRIYAGI NAVK SG
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 370 TLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
            L+E+LF AAYN+KKQA+++G++ S +WDRLVFNKI++RLGGRVRFM SGASPLSP+VM+
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQ 489
           FLKVCFG +V EGYGMTETSC+IS +D+GDNL+GHVGSPNPACE+KLVDVPEMNYTS DQ
Sbjct: 435 FLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQ 494

Query: 490 PHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
           PHPRGEICVRGPI+F GYYK+E+QT+EVID DGWLHTGDIGLWLPGGRLKIIDRKKNIFK
Sbjct: 495 PHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554

Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFED 609
           LAQGEY+APEKIENVYAKCKFV QCFIYGDSFNS LVA+V+VDPDVLK WAAS+GIK  D
Sbjct: 555 LAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGGD 614

Query: 610 LEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQ 669
           L +LCN+PR +AAVL++M+ VG+E QLRGFE+AKAVTL+ EPF++ENGLLTPTFKIKRPQ
Sbjct: 615 LRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKIKRPQ 674

Query: 670 AKERFAKAISNMYAELATSD 689
           AKE FA+AI+NMY EL  SD
Sbjct: 675 AKEYFAEAITNMYKELGASD 694

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1

 Score =  514 bits (1324), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/622 (44%), Positives = 389/622 (62%), Gaps = 22/622 (3%)

Query: 75  HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG 134
           + ++ TL+D F   ++   +   LG+R + D     Y+W++Y +V    + IGS LL  G
Sbjct: 86  YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141

Query: 135 LQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC- 191
            Q      IG++  NRPEW+I++ AC AYS + VPLYDTLG DA+ Y+VN AE+  IF  
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201

Query: 192 IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
            P+    LL  +     P + +IVV+      L       GV++IS   ++  G ++ + 
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ----FYPSDIYMSYLP 305
             PP+P+D+A IC+TSGTTG PKGA++TH N++S+ + F    +       SDI++S+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321

Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
           LAH+YE+  Q V + +G  +GF+QGD   LMDDL  L+PTIFP VPRL NR++  I    
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIF--A 379

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRLVFNKIRERLGGRVRFMGSGASPLS 424
           +A+ T++  L   A   K+  + SG   +  +WD+L+F+KI+  LGG+VR M +GA+P+S
Sbjct: 380 QANTTVKRWLLDFASKRKEAELRSGIIRNNSVWDKLIFHKIQSSLGGKVRLMVTGAAPVS 439

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
             V+ FL+   GCQ  EGYG TE +   S    GD  +GHVG+P P   IKLVDV EMNY
Sbjct: 440 ATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMNY 499

Query: 485 TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544
            +       GE+CV+GP VF+GY K+  +T E +D DGWLHTGDIG WLP G LKIIDRK
Sbjct: 500 MA---AMGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRK 556

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG 604
           K+IFKLAQGEY+APEKIEN+Y + + V Q F++G+S  + L+AIV  D + L  WA  +G
Sbjct: 557 KHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRG 616

Query: 605 IKFE-DLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTF 663
             FE   E+LC +   + A+L +M  +GK+  L+ FE  + + L PE FSV+NGLLTPT 
Sbjct: 617 --FEGSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTM 674

Query: 664 KIKRPQAKERFAKAISNMYAEL 685
           K KRP+ +  F   I  +Y+ +
Sbjct: 675 KAKRPELRNYFRSQIDELYSTI 696

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Cavia porcellus (taxid: 10141)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1

 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/584 (46%), Positives = 377/584 (64%), Gaps = 18/584 (3%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  + G    IG++  NRPEW+I + AC  YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP +++Y++N A+I   I   P     LL  +   E P + L++++   D+ L   
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  + +   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMV--QFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  +   Q+ P+  D++ SYLPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
           L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
            SGHVG+P P   IKLVD  E+NY TS+ +    GEICV+GP VF+GY K+E +T+E +D
Sbjct: 476 TSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEALD 531

Query: 520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
            DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GD
Sbjct: 532 SDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGD 591

Query: 580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
           S  + LV IV  DP+V+  WA  +GI+  + ++LC     + A+L +M  +GKE  L  F
Sbjct: 592 SLKAFLVGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHSF 650

Query: 640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA 683
           E  KA+ +  + FSV+NGLLTPT K KRP+ +E F K I  +Y+
Sbjct: 651 EQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/621 (43%), Positives = 388/621 (62%), Gaps = 20/621 (3%)

Query: 75  HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG 134
           + ++ TL++ F   ++   +   LG+R + D     Y+W++Y +V+   + IGS L+  G
Sbjct: 86  YDDVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKG 141

Query: 135 LQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC- 191
            +      IG++  NRPEW+I++  C AYS + VPLYDTLG +A+ Y+VN AE+  +F  
Sbjct: 142 FKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVD 201

Query: 192 IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
            P+    LL  +    IP + +IVV+      L       GV++ S   ++  G ++ + 
Sbjct: 202 KPEKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRK 261

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF----SLMVQFYPSDIYMSYLP 305
             PP PED+A IC+TSGTTG PKGA++TH N++S+ + F       V   P D  +S+LP
Sbjct: 262 PKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLP 321

Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
           LAH++ER  + V + +G  +GF+QGD   LMDDL VL+PT+FP VPRL NR++  I    
Sbjct: 322 LAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFG-- 379

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRLVFNKIRERLGGRVRFMGSGASPLS 424
           +A+ TL+  L   A   K+  + SG   +  +WDRL+F+K++  LGGRVR M +GA+P+S
Sbjct: 380 QANTTLKRWLLDFASKRKEAELRSGIIRNNSLWDRLIFHKVQSSLGGRVRLMVTGAAPVS 439

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
             V+ FL+   GCQ  EGYG TE +        GD  +GHVG+P P   IKLVDV EMNY
Sbjct: 440 ATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNY 499

Query: 485 TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544
            + +     GE+CV+GP VFQGY K+  +T E +D DGWLHTGDIG WLP G LKIIDRK
Sbjct: 500 MAAEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRK 556

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG 604
           K+IFKLAQGEY+APEKIEN+Y + + V Q F++G+S  + L+AIV  D + L  WA  +G
Sbjct: 557 KHIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRG 616

Query: 605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFK 664
            +    E+LC +   + A+L +M  +GK+  L+ FE  K +TL PE FS++NGLLTPT K
Sbjct: 617 FE-GSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMK 675

Query: 665 IKRPQAKERFAKAISNMYAEL 685
            KRP+ +  F   I ++Y+ +
Sbjct: 676 AKRPELRNYFRSQIDDLYSTI 696

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/585 (45%), Positives = 370/585 (63%), Gaps = 16/585 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct: 103 YRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPL 162

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
           YDTLGP+A+ ++VN A+I  + C  PQ    L+  + +   PS+ +I+++   D+ L   
Sbjct: 163 YDTLGPEAIVHIVNKADIAMVICDTPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQR 222

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
              SG++++S    ++ G    +   PP PED++ IC+TSGTTG PKGA++TH N++SN 
Sbjct: 223 GEKSGIEILSLYDAENLGKEHFRKPVPPSPEDLSVICFTSGTTGDPKGAMITHQNIVSNA 282

Query: 286 AGFSLMVQF----YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           A F   V+      P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L DD+  
Sbjct: 283 AAFLKCVEHAYEPTPDDVAISYLPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKT 342

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
           LKPT+FP+VPRL NRIY  + N  K    L++ L   A +SK + +  G       WD+L
Sbjct: 343 LKPTLFPAVPRLLNRIYDKVQNEAKTP--LKKFLLKLAVSSKFKELQKGIIRHDSFWDKL 400

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
           +F KI++ LGGRVR + +GA+P+S  VM F +   GCQV E YG TE +   +    GD 
Sbjct: 401 IFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDW 460

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG P     +KL DV +MNY + +     GE+C++G  VF+GY K+  +T+E +D 
Sbjct: 461 TSGHVGVPLACNYVKLEDVADMNYFTVNN---EGEVCIKGTNVFKGYLKDPEKTQEALDS 517

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + VLQ F++G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGES 577

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
             S LV +V  D DVL  +AA  G+K    E+LC +   R A+L ++  +GKE  L+ FE
Sbjct: 578 LRSSLVGVVVPDTDVLPSFAAKLGVK-GSFEELCQNQVVREAILEDLQKIGKESGLKTFE 636

Query: 641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             KA+ L PEPFS+ENGLLTPT K KR +  + F   I ++Y  +
Sbjct: 637 QVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4

 Score =  507 bits (1305), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/583 (46%), Positives = 371/583 (63%), Gaps = 16/583 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  +      IG++  NRPEW+IV+ AC  YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP A++Y++N A+I  +    PQ    LL  +   E P + LI+++   +E L   
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  + Q   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS-KMWDRL 400
           L PTIFP VPRL NR+Y  I +  +A+  L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFS--QANTPLKRWLLEFAAKRKQAEVRSGIIRNDSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG+P P   IKLVDV E+NY +       GEICVRGP VF+GY K+  +T+E +D 
Sbjct: 476 TSGHVGAPLPCNHIKLVDVEELNYWA---CKGEGEICVRGPNVFKGYLKDPDRTKEALDS 532

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct: 533 DGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDS 592

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
             + LV IV  DP+V+  WA  +GI+      LC +   + A+L +M  +GKE  L  FE
Sbjct: 593 LKAFLVGIVVPDPEVMPSWAQKRGIE-GTYADLCTNKDLKKAILEDMVRLGKESGLHSFE 651

Query: 641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA 683
             KA+ +  + FSV+NGLLTPT K KRP+ +E F K I  +Y+
Sbjct: 652 QVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/582 (45%), Positives = 369/582 (63%), Gaps = 16/582 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  + G    +G++  NRPEW+I + AC  YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP ++ Y++N A+I   I   P     LL  +   E P + L++++   ++ L   
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  +     PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
           L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG+P P   IKLVD  E+NY +       GEICV+GP VF+GY K+E +T+E +D 
Sbjct: 476 TSGHVGAPLPCNHIKLVDAEELNYWT---CKGEGEICVKGPNVFKGYLKDEDRTKEALDS 532

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct: 533 DGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGDS 592

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
             + LV IV  DP+V+  WA  +GI+    ++LC     + A+L +M  +GKE  L  FE
Sbjct: 593 LKAFLVGIVVPDPEVMPSWAQKKGIE-GTYQELCMKKELKKAILDDMVMLGKESGLHSFE 651

Query: 641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY 682
             KA+ +  + FSV+NGLLTPT K KRP+ +E F K I  +Y
Sbjct: 652 QVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/585 (44%), Positives = 373/585 (63%), Gaps = 16/585 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQ--KGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           YKW++Y +VS   + +GS LL  G +  +   IG++  NRPEW+I + AC  YS ++VPL
Sbjct: 103 YKWISYKQVSDRAEYLGSCLLHKGYKPSQDQFIGIFAQNRPEWVISELACYTYSMVAVPL 162

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
           YDTLG +A+ YV+N A+I  + C  PQ    L+  + +   P +  ++++   D+ L   
Sbjct: 163 YDTLGAEAIIYVINRADISVVICDTPQKATMLIENVEKDLTPGLKTVILMDPFDDDLMKR 222

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               G++++S    ++ G  + +   PP PED++ IC+TSGTTG PKGA+LTH N++SN+
Sbjct: 223 GEKCGIEMLSLHDAENLGKENFKKPMPPNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNM 282

Query: 286 AGF----SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           A F      + Q  P D+ +SYLPLAH++ER  Q V    G  +GF+QGD   L DD+  
Sbjct: 283 AAFLKFLEPIFQPTPEDVTISYLPLAHMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKA 342

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
           LKPT+FP+VPRL NR+Y  + N  K    L++ L   A  SK   + +G    + +WD+L
Sbjct: 343 LKPTVFPTVPRLLNRVYDKVQNEAKTP--LKKFLLNLAIISKFNEVRNGIIRRNSLWDKL 400

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
           VF+KI+  LGG+VR M +GA+P+S  V+ F +   GC V E YG TE +   S    GD 
Sbjct: 401 VFSKIQSSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDW 460

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            +GHVG+P     +KL DV +MNY S +     GEIC++G  VF+GY K+  +T+EV+D 
Sbjct: 461 TAGHVGTPVSCNFVKLEDVADMNYFSVNN---EGEICIKGNNVFKGYLKDPEKTQEVLDK 517

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIENVY++ + +LQ F++G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYSRSRPILQVFVHGES 577

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
             S L+ +V  DP+ L  +AA  G+K    E+LC +   + A+L ++  VGKEG L+ FE
Sbjct: 578 LRSFLIGVVVPDPESLPSFAAKIGVK-GSFEELCQNQCVKKAILEDLQKVGKEGGLKSFE 636

Query: 641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             K++ + PEPFS+ENGLLTPT K KR +  + F   I ++Y  +
Sbjct: 637 QVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8JZR0|ACSL5_MOUSE Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/585 (44%), Positives = 374/585 (63%), Gaps = 16/585 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct: 103 YKWISYKQVSDRAEYLGSCLLHKGYKSSQDQFVGIFAQNRPEWVISELACYTYSMVAVPL 162

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
           YDTLG +A+ +V+N A+I  + C  PQ    L+  + +   P +  I+++   D+ L   
Sbjct: 163 YDTLGTEAIIFVINRADIPVVICDTPQKATMLVENVEKGLTPGLKTIILMDPFDDDLMKR 222

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV+++S    ++ G  + +   PPKPED++ IC+TSGTTG PKGA+LTH N++SN+
Sbjct: 223 GEKCGVEMLSLHDAENIGKENFKKPVPPKPEDLSVICFTSGTTGDPKGAMLTHENVVSNM 282

Query: 286 AGFSLMVQ--FYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           A F   ++  F P+  D+ +SYLPLAH++ER  Q +    G  +GF+QGD   L DD+  
Sbjct: 283 AAFLKFLEPIFQPTSDDVTISYLPLAHMFERLVQGILFSCGGKIGFFQGDIRLLPDDMKA 342

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
           LKPT+FP+VPRL NR+Y  + N  K    L++ L   A  SK   + +G      +WD+L
Sbjct: 343 LKPTVFPTVPRLLNRVYDKVQNEAKTP--LKKFLLNLAIISKFNEVKNGIIRRDSLWDKL 400

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
           VF+KI+  LGG+VR M +GA+P+S  V+ F +   GC V E YG TE +   S    GD 
Sbjct: 401 VFSKIQGSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDW 460

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            +GHVG+P     +KL DV +MNY S +     GEIC++G  VF+GY K+  +T+EV+D 
Sbjct: 461 TAGHVGTPVACNFVKLEDVADMNYFSVNN---EGEICIKGNNVFKGYLKDPEKTQEVLDK 517

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKI+DRKKNIFKLAQGEY+APEKIENVY++ + VLQ F++G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGES 577

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
             S L+ +V  DPD L  +AA  G+K    E+LC +   + A+L ++  +GKEG L+ FE
Sbjct: 578 LRSFLIGVVVPDPDSLPSFAAKIGVK-GSFEELCKNQCVKEAILEDLQKIGKEGGLKSFE 636

Query: 641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             K++ + PEPF++ENGLLTPT K KR +  + F   I ++Y  +
Sbjct: 637 QVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL (By similarity). May have a role in the survival of glioma cells (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	698
224123160	695	predicted protein [Populus trichocarpa]	0.991	0.995	0.793	0.0
225432604	697	PREDICTED: long chain acyl-CoA synthetas	0.989	0.991	0.772	0.0
147863228	703	hypothetical protein VITISV_002313 [Viti	0.991	0.984	0.768	0.0
255552335	694	Acyl-CoA synthetase [Ricinus communis] g	0.992	0.998	0.764	0.0
83320527	690	ACS4 [Ricinus communis]	0.987	0.998	0.782	0.0
297812959	699	long-chain acyl-CoA synthetase 7 [Arabid	0.989	0.988	0.753	0.0
22327099	700	long-chain acyl-CoA synthetase 7 [Arabid	0.989	0.987	0.751	0.0
449432710	695	PREDICTED: long chain acyl-CoA synthetas	0.994	0.998	0.746	0.0
20805875	700	long chain acyl-CoA synthetase 7 [Arabid	0.989	0.987	0.749	0.0
356574400	698	PREDICTED: long chain acyl-CoA synthetas	0.988	0.988	0.735	0.0

>gi|224123160|ref|XP_002319009.1| predicted protein [Populus trichocarpa] gi|222857385|gb|EEE94932.1| predicted protein [Populus trichocarpa]

 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/693 (79%), Positives = 614/693 (88%), Gaps = 1/693 (0%)

Query: 3   DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGC-FVQSQGYSVRLPEKLQTGKWNVYRS 61
           DS AQRR K++Q H+ S+ T   S L  N T+   FV  Q YSV LPEKLQTGKWNVYRS
Sbjct: 2   DSPAQRRLKSIQSHVLSSTTADQSDLQANLTSSSQFVHRQQYSVCLPEKLQTGKWNVYRS 61

Query: 62  ARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSA 121
           ARSP+ +V RF DHPEI TLHDNF++AV+ + DYKYLGTRV+ DG +G Y WMTYGE  A
Sbjct: 62  ARSPMKIVTRFHDHPEIETLHDNFVHAVKTFGDYKYLGTRVQADGMIGEYTWMTYGEAGA 121

Query: 122 ARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVV 181
           AR+ IGS L FHGLQKG  IGLY INRPEWLIVDHAC+AYSYISVPLYDTLGPDAVKYVV
Sbjct: 122 AREAIGSALRFHGLQKGACIGLYFINRPEWLIVDHACTAYSYISVPLYDTLGPDAVKYVV 181

Query: 182 NHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS 241
           NHA+++AIFC+P+TLNTLLSFISEIPSV LIVVVGG DEHLPSLP  SGVKL SY +L S
Sbjct: 182 NHADVQAIFCVPETLNTLLSFISEIPSVRLIVVVGGVDEHLPSLPLASGVKLRSYTKLFS 241

Query: 242 QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYM 301
           +G SS QPF PPKPED+ATICYTSGTTGTPKG VLTH NLIS+VAGF + ++F P+DIY+
Sbjct: 242 EGRSSLQPFIPPKPEDVATICYTSGTTGTPKGVVLTHNNLISSVAGFCMAIKFNPADIYI 301

Query: 302 SYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           SYLPLAHIYER+NQIVSVYYGVAVGFYQGDNLKL+DDL+ L+PTI  SVPRLYNRIY GI
Sbjct: 302 SYLPLAHIYERSNQIVSVYYGVAVGFYQGDNLKLLDDLSALRPTILCSVPRLYNRIYDGI 361

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
            NAVK+SG L+E+LF AAYNSKKQA++SG+ PS MWDRLVFNKI+E+LGGRVRFMGSGAS
Sbjct: 362 INAVKSSGVLKERLFRAAYNSKKQALMSGRNPSPMWDRLVFNKIKEKLGGRVRFMGSGAS 421

Query: 422 PLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPE 481
           PLSPDVMDFL+VCFGCQV+EGYGMTETSC+IS++D+GDNLSGHVGSPNPACEIKLVDVPE
Sbjct: 422 PLSPDVMDFLRVCFGCQVLEGYGMTETSCVISSVDQGDNLSGHVGSPNPACEIKLVDVPE 481

Query: 482 MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
           MNYTSEDQPHPRGEICVRGP +FQGYYK EVQ REVID DGWLHTGDIGLWLPGGRLKII
Sbjct: 482 MNYTSEDQPHPRGEICVRGPTIFQGYYKAEVQMREVIDDDGWLHTGDIGLWLPGGRLKII 541

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAA 601
           DRKKNIFKLAQGEY+APEK+ENVY KC+FV QCFIYGDSFNS LVA+VAV+PDVL+DWA 
Sbjct: 542 DRKKNIFKLAQGEYIAPEKVENVYTKCRFVSQCFIYGDSFNSSLVAVVAVEPDVLRDWAV 601

Query: 602 SQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTP 661
           S+GIK +DL QLCNDPRARAAVLA+M+ VGKE QLRGFE+AKAVTL+PEPF++ENGLLTP
Sbjct: 602 SEGIKHDDLGQLCNDPRARAAVLADMDLVGKEAQLRGFEFAKAVTLVPEPFTMENGLLTP 661

Query: 662 TFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           TFK+KRPQAKE FAKAISNMYA L+ SD  P K
Sbjct: 662 TFKVKRPQAKEYFAKAISNMYAALSASDPKPPK 694

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera]

 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/693 (77%), Positives = 620/693 (89%), Gaps = 2/693 (0%)

Query: 3   DSSAQRRFKAVQRHLTSTNTD--RCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYR 60
           +S+ QRR  A+Q  L +T  D    SQL  N T G FV  QGYSV LPEKL+TGKWNVYR
Sbjct: 2   ESAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYR 61

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SA+SPL LV RFPDHPEIGTLHDNF+++VE + DYKYLGTR+RVDGTVG YKWMTYGE  
Sbjct: 62  SAQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 121

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
            AR  IGSGL+++G+ KG  +GLY INRPEWLIVDHACSA+SY+SVPLYDTLGPDAVKY+
Sbjct: 122 TARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYI 181

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA ++AIFC+PQTLN+LLSF+SEIPSV LIVVVGG D+ +PSLPST+GV+++SY +L 
Sbjct: 182 VNHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLL 241

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           +QG S PQPFCPPKP+D+ATICYTSGTTGTPKGAVL+HGNLI+NVAG +L V+FYPSD+Y
Sbjct: 242 NQGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVY 301

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQ+++ Y+GVAVGFYQGDNLKLMDD+A L+PTIF SVPRLYNRIYAG
Sbjct: 302 ISYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 361

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           ITNAVK SG LRE+LF AAYN+KK+AI+SG+ PS MWDRLVFNKI+E+LGGRVRFM SGA
Sbjct: 362 ITNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGA 421

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVM+FL++CFG ++ EGYGMTETSC+IS++D+ DNL+GHVGSPNPACE+KLVDVP
Sbjct: 422 SPLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVP 481

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EMNYTSEDQP+PRGEICVRGPI+F GY+K+EVQTREVID DGWLHTGDIGLWLPGGRLKI
Sbjct: 482 EMNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKI 541

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+YGDS NS LVAIV+VDPDVLK WA
Sbjct: 542 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSMNSSLVAIVSVDPDVLKAWA 601

Query: 601 ASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT 660
           AS+GI+++DL QLCNDPR RAAVLA+M+ VG+E +LRGFE+AKAVTL+ EPF+++N LLT
Sbjct: 602 ASEGIQYQDLGQLCNDPRVRAAVLADMDVVGREAKLRGFEFAKAVTLVLEPFTMDNDLLT 661

Query: 661 PTFKIKRPQAKERFAKAISNMYAELATSDQIPQ 693
           PTFKIKRPQAK  FA AISNMYAEL+TSD  PQ
Sbjct: 662 PTFKIKRPQAKAYFANAISNMYAELSTSDPSPQ 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera]

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/700 (76%), Positives = 602/700 (86%), Gaps = 8/700 (1%)

Query: 3   DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSA 62
           +S+AQRR KA+Q HL        S +  + T   F  +QGYSV LPEKL TGKWNVYRS 
Sbjct: 2   ESTAQRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYRSV 61

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RSPL L+ R P+HPEIGTLHDNF++A+E + DY YLGTRVR DGTVG YKWMTYGE    
Sbjct: 62  RSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAGTV 121

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN 182
           R  IGSGL  HGL +G  IGLY INRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY+VN
Sbjct: 122 RLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYIVN 181

Query: 183 HAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242
           HA+++AIFC+P TLNTLLSF+SEIPSV L+VVVGG DEH+PSLPS S VKLIS+ +L SQ
Sbjct: 182 HADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLLSQ 241

Query: 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
           G S  QPFCPPKPEDIATICYTSGTTGTPKG +LTHGNLI+ +AG SL ++F PSDIY+S
Sbjct: 242 GHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIYIS 301

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
           YLPLAHIYERANQ++  YYG AVGFYQGDNLKLMDDLA L+PTIF SVPRLYNRIY+GI 
Sbjct: 302 YLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSGIM 361

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
           NAV+ SG LR+ LF AAYNSKKQ I+SG+ PS MWDRLVF+KI+  LGGRV FMGSGASP
Sbjct: 362 NAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGASP 421

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           LSPDVMDFL+VCFGCQV+EGYGMTETSC+IS +DKGDNLSGHVGSPNPACEIKLVDVPEM
Sbjct: 422 LSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVPEM 481

Query: 483 NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           NYTSEDQP+PRGEICVRGP++FQGYYK+EVQT+EVIDGDGWLHTGDIGLWLPGGRLKIID
Sbjct: 482 NYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKIID 541

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
           RKKNIFKLAQGEY+APEKIENVYAKCKFV QCFIYGDS NSCLVAIV+VDPDVLKDWA S
Sbjct: 542 RKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWATS 601

Query: 603 QGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPT 662
           + IK+E+L  LCNDPRARAAVL EM+A+G+E QLRGFE+AK+VTL+ EPF++EN LLTPT
Sbjct: 602 EAIKYENLGHLCNDPRARAAVLTEMDAIGREAQLRGFEFAKSVTLVVEPFTMENDLLTPT 661

Query: 663 FK--------IKRPQAKERFAKAISNMYAELATSDQIPQK 694
           FK        IKRPQAK  F+  ISNMYAE++TSD  PQK
Sbjct: 662 FKASFIILQMIKRPQAKAYFSAPISNMYAEISTSDTNPQK 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis]

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/693 (76%), Positives = 609/693 (87%)

Query: 1   MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYR 60
           M+  SAQRR +A+  HL +      S L  N T G F   QGYSV LPEKLQTGKWNVYR
Sbjct: 1   MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SARSPL LV RFPDHP+IGTLHDNF  +V+ + DYKYLGTR+RVDGTVG YKWMTYGE  
Sbjct: 61  SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
            AR  IGSGL+ HG+ KG  +GLY INRPEWLIVDHACSAYSYISVPLYDTLGPDAVK++
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA+++AIFC+PQTL  LLSF+SEI SV LIVVVGG D+ +PSLPS++GV++++Y +L 
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           SQG S+ QPFCPPKPED+ATICYTSGTTGTPKGA LTHGNLI+NVAG +L  +FYPSDIY
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQ+++VYYGVAVGFYQGDNLKLMDD+A L+PTIF SVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           ITNAVK SG LRE+LF AAYN+KKQAI++G++PS MWDRLVF+KI+ +LGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVM+FLK+CFG +V EGYGMTETSC+ISA+++GDNL+GHVGSPNPACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EM+YTS+DQP+PRGEICVRGPIVFQGY+K+E QTR+VID DGWLHTGDIGLWLP GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVYAKC+F+ QCF+YGDS NS LVAIVAVD D LK WA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCRFIAQCFVYGDSLNSALVAIVAVDQDTLKAWA 600

Query: 601 ASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT 660
           AS+GIK+E+L QLCNDPRARAAVLA+M+AVG+E +LRGFE+AKAVTL+ EPF++ENGLLT
Sbjct: 601 ASEGIKYENLGQLCNDPRARAAVLADMDAVGREAKLRGFEFAKAVTLVLEPFTMENGLLT 660

Query: 661 PTFKIKRPQAKERFAKAISNMYAELATSDQIPQ 693
           PTFKIKRPQAK  F   IS MY ELATSD  P+
Sbjct: 661 PTFKIKRPQAKAYFQNTISKMYEELATSDPSPK 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83320527|gb|ABC02882.1| ACS4 [Ricinus communis]

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/690 (78%), Positives = 608/690 (88%), Gaps = 1/690 (0%)

Query: 1   MEDSSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVY 59
           ME ++AQRR KA++ HL +ST  D  S L  N T   FV +Q YSV LPEKLQTGKWNVY
Sbjct: 1   MESTTAQRRLKAIRGHLISSTVDDHSSPLQANLTASEFVHNQTYSVVLPEKLQTGKWNVY 60

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSPL LV RF DHPEI TLHDNF+ AVE + DYKYLGTR+R DGTVG Y WMTYGE 
Sbjct: 61  RSVRSPLKLVSRFHDHPEIATLHDNFVRAVETFQDYKYLGTRIRQDGTVGEYTWMTYGEA 120

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           + AR+ IGSGL +HG+QKG  +G++ +N+PEWLIVDHAC+AYSYISVPLYDTLGPDAVKY
Sbjct: 121 ATAREAIGSGLRYHGIQKGACVGIFFVNKPEWLIVDHACAAYSYISVPLYDTLGPDAVKY 180

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+P+T N LLSF++EIPSV LIVVVG  DE LPSLPST GVKLISY++L
Sbjct: 181 VVNHANVQAIFCVPETSNALLSFLAEIPSVQLIVVVGAVDEQLPSLPSTFGVKLISYMKL 240

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
             +GCS+ QPF PPKPED+ATICYTSGTTGTPKG VLTHG+LI++VAGF L ++F PSDI
Sbjct: 241 LGEGCSNRQPFIPPKPEDVATICYTSGTTGTPKGVVLTHGSLIASVAGFCLAIKFNPSDI 300

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYER NQ+V VYYGVAVGFYQGDNLKLMDDLA L+PT+F SVPRLYNRIY 
Sbjct: 301 YISYLPLAHIYERTNQMVLVYYGVAVGFYQGDNLKLMDDLAALRPTLFCSVPRLYNRIYD 360

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT AVKASG LRE+LF AAYNSKKQAI+SG+ PS MWD+LVFNKIR +LGGRVRFMGSG
Sbjct: 361 GITKAVKASGVLRERLFRAAYNSKKQAIMSGRNPSPMWDKLVFNKIRGKLGGRVRFMGSG 420

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPD+MDFL+VCFGCQV+EGYGMTETSC+IS +D GDNLSGHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMDFLRVCFGCQVLEGYGMTETSCVISVMDLGDNLSGHVGSPNAACEIKLVDV 480

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYT +DQP+PRGEICVRGP VF+GYYK+ VQTREV D DGW+HTGDIGLWLPGGRLK
Sbjct: 481 PEMNYTLDDQPYPRGEICVRGPTVFKGYYKDGVQTREVFDDDGWMHTGDIGLWLPGGRLK 540

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY+KC+FV QCFIYGDSFNS LVA+VAVDPDVL+DW
Sbjct: 541 IIDRKKNIFKLAQGEYIAPEKIENVYSKCRFVSQCFIYGDSFNSFLVAVVAVDPDVLRDW 600

Query: 600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
           A S+GIK++DL QLCNDPR RAAVLA+M+ VGKE QLRGFE+AKAVTL+PEPFS+ENGLL
Sbjct: 601 AVSEGIKYDDLGQLCNDPRTRAAVLADMDEVGKEAQLRGFEFAKAVTLVPEPFSLENGLL 660

Query: 660 TPTFKIKRPQAKERFAKAISNMYAELATSD 689
           TPTFKIKRP+AKE F KAISNMYAE AT D
Sbjct: 661 TPTFKIKRPRAKEYFEKAISNMYAETATLD 690

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812959|ref|XP_002874363.1| long-chain acyl-CoA synthetase 7 [Arabidopsis lyrata subsp. lyrata] gi|297320200|gb|EFH50622.1| long-chain acyl-CoA synthetase 7 [Arabidopsis lyrata subsp. lyrata]

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/694 (75%), Positives = 601/694 (86%), Gaps = 3/694 (0%)

Query: 4   SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVYR 60
           S AQRR + ++ HL ++  D  S L  N T      F+   GYSV LPEK   GKWNVYR
Sbjct: 5   SPAQRRLETIRSHLYTSPADDQSSLFLNATASSASPFLNKDGYSVVLPEKPDNGKWNVYR 64

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SA+SP  LV RF DHPEIGTLHDNF+YAVE YP+ KYLGTRVR DGT+G Y WMTY E +
Sbjct: 65  SAKSPTKLVSRFQDHPEIGTLHDNFVYAVETYPENKYLGTRVRSDGTIGEYSWMTYAETA 124

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
           + R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS+ISVPLYDTLGPDAVK+V
Sbjct: 125 SERQAIGSGLLFHGINQGACVGLYFINRPEWLVVDHACAAYSFISVPLYDTLGPDAVKFV 184

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  SGV ++SY +L 
Sbjct: 185 VNHATLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPQGSGVNIVSYQKLL 244

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           SQG S+  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F PSD Y
Sbjct: 245 SQGRSTLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFLPSDTY 304

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQI++VY GV VGFYQGD LKLMDD AVL+PTIF SVPRLYNRIY G
Sbjct: 305 ISYLPLAHIYERANQIMAVYGGVTVGFYQGDVLKLMDDFAVLRPTIFCSVPRLYNRIYDG 364

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           IT+AVK+SG ++++LF  AYNSKKQAI++G+ PS  WD+LVFNKI+E+LGGRVRFMGSGA
Sbjct: 365 ITSAVKSSGVIKQRLFQVAYNSKKQAIINGRNPSAFWDKLVFNKIKEKLGGRVRFMGSGA 424

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVMDFL+VCFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDVP
Sbjct: 425 SPLSPDVMDFLRVCFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVP 484

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLKI
Sbjct: 485 EMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKI 544

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDPDV+KDWA
Sbjct: 545 IDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPDVMKDWA 604

Query: 601 ASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT 660
           AS+GIK+E L QLCNDPR R AVLAEM+ +GKE QLRGFE+AKAVTL+PEPF++ENGLLT
Sbjct: 605 ASEGIKYEHLGQLCNDPRVRKAVLAEMDDLGKEAQLRGFEFAKAVTLVPEPFTLENGLLT 664

Query: 661 PTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           PTFKIKRPQAK  FA+AI+ MYAE+A S+ +P K
Sbjct: 665 PTFKIKRPQAKAYFAEAIAKMYAEIAASNPMPSK 698

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327099|ref|NP_198112.2| long-chain acyl-CoA synthetase 7 [Arabidopsis thaliana] gi|313471383|sp|Q8LKS5.2|LACS7_ARATH RecName: Full=Long chain acyl-CoA synthetase 7, peroxisomal gi|332006321|gb|AED93704.1| long-chain acyl-CoA synthetase 7 [Arabidopsis thaliana]

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/695 (75%), Positives = 603/695 (86%), Gaps = 4/695 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
           AAS+GIK+E L QLCNDPR R  VLAEM+ +G+E QLRGFE+AKAVTL+PEPF++ENGLL
Sbjct: 605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLL 664

Query: 660 TPTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           TPTFKIKRPQAK  FA+AIS MYAE+A S+ IP K
Sbjct: 665 TPTFKIKRPQAKAYFAEAISKMYAEIAASNPIPSK 699

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432710|ref|XP_004134142.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal-like [Cucumis sativus]

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/694 (74%), Positives = 606/694 (87%)

Query: 1   MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYR 60
           M+ S+A+RR +A+Q HL   +    SQL  N T G F    GYSV LPEKLQTGKWNVYR
Sbjct: 1   MDSSAARRRIQAIQDHLVPASEFSSSQLQLNATAGEFFSGDGYSVVLPEKLQTGKWNVYR 60

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SARSPL LVDRFPDHPEIGTLHDNF  + + Y DYKYLGTR+R DGTVG YKWMTYGE  
Sbjct: 61  SARSPLKLVDRFPDHPEIGTLHDNFTRSTDVYRDYKYLGTRIRCDGTVGEYKWMTYGEAG 120

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
            AR  +GSGL+ HG+ KG  IGLY INRPEWL+VDHACSAYSYISVPLYDTLGPDAVKY+
Sbjct: 121 TARTALGSGLVNHGIPKGSCIGLYFINRPEWLVVDHACSAYSYISVPLYDTLGPDAVKYI 180

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA ++ IFC+PQTLN+LLSF+SEIP+V LIVVVGG D+ +PSLPS++GV++++Y  L 
Sbjct: 181 VNHALVQVIFCVPQTLNSLLSFLSEIPTVRLIVVVGGVDDQIPSLPSSTGVQVLTYASLL 240

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           SQG ++ QPFCPPK +DIATICYTSGTTGTPKGAVLTHGNLI++VAG SL ++F+PSD+Y
Sbjct: 241 SQGSTNIQPFCPPKSDDIATICYTSGTTGTPKGAVLTHGNLIASVAGCSLALKFFPSDVY 300

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQ+ +VY+GVAVGFYQGDN+KLMDD+  L+PTIF SVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVSTVYFGVAVGFYQGDNMKLMDDMIALRPTIFCSVPRLYNRIYAG 360

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           I NAVK SG L+E+LF AAYNSK+QAI++G++PS +WD+LVFNKI+ +LGGRVR + SGA
Sbjct: 361 IINAVKTSGVLKERLFNAAYNSKRQAIMNGKSPSPLWDKLVFNKIKAKLGGRVRVLASGA 420

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPD+++FLK+CFG  V EGYGMTETSC+ISA+D  D L GHVG+PNPACEIKLVDVP
Sbjct: 421 SPLSPDILEFLKICFGGVVFEGYGMTETSCVISAMDPDDTLCGHVGAPNPACEIKLVDVP 480

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EMNYTS+DQP+ RGEICVRGP+VF+GY+K+EVQTRE +D DGWLHTGDIGLW+ GGRLKI
Sbjct: 481 EMNYTSDDQPYSRGEICVRGPLVFKGYFKDEVQTREAVDEDGWLHTGDIGLWMQGGRLKI 540

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+YGDSFN+ LVA+V+VD + LK WA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSFNASLVAVVSVDVETLKAWA 600

Query: 601 ASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT 660
           +S+GIK+ DL QLCNDPRARAAVLA+M+AVG+E QLRGFE+AKAVTL+ EPF++ENGLLT
Sbjct: 601 SSEGIKYNDLAQLCNDPRARAAVLADMDAVGREAQLRGFEFAKAVTLVHEPFTLENGLLT 660

Query: 661 PTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           PTFKIKRPQAKE FA AISNMYAELA+SD   QK
Sbjct: 661 PTFKIKRPQAKEYFANAISNMYAELASSDSSSQK 694

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20805875|gb|AAM28874.1|AF503757_1 long chain acyl-CoA synthetase 7 [Arabidopsis thaliana]

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/695 (74%), Positives = 602/695 (86%), Gaps = 4/695 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
           AAS+GIK+E L QLCNDPR R  VLAEM+ +G+E QLRGFE+AKAVTL+PEP ++ENGLL
Sbjct: 605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPLTLENGLL 664

Query: 660 TPTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
           TPTFKIKRPQAK  FA+AIS MYAE+A S+ IP K
Sbjct: 665 TPTFKIKRPQAKAYFAEAISKMYAEIAASNPIPSK 699

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max]

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/693 (73%), Positives = 611/693 (88%), Gaps = 3/693 (0%)

Query: 5   SAQRRFKAVQRHLTSTNT--DRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSA 62
           +AQRR KA+  HLT+T T  D  S L+ N T G F   QGYSV LPEKLQTGKWNVYRS 
Sbjct: 6   AAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWNVYRSV 65

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RSPL LV +FP+HPEIGT+HDNF+ +V+ + DYKYLGTRVRVDGTVG YKWMTYGE   A
Sbjct: 66  RSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 125

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN 182
           R  IGSGL+++G+QKG  IGLY INRPEWLIVDHACSAYS++SVPLYDTLGPDAVKY+V+
Sbjct: 126 RSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAVKYIVS 185

Query: 183 HAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242
           HA ++ IFC+P+TLN LLS++S+IP+V LIVVVGG D+ +PS+PS++GV++I+Y +L +Q
Sbjct: 186 HAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYSKLLNQ 245

Query: 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
           G S+ QPFCPPKP+DIATICYTSGTTGTPKGA+LTHGN I++VAG ++  +F PSD+Y+S
Sbjct: 246 GRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPSDVYIS 305

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
           YLPLAHIYERANQ+++V++G+AVGFYQGD++KLMDD+A L+PT+F SVPRLYNRIYAGIT
Sbjct: 306 YLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYAGIT 365

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
           NAVK SG L+E+LF AAYN+K+QA++ G+ PS MWDRLVFNKI+E+LGGRVRFM SGASP
Sbjct: 366 NAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASGASP 425

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           LSPD+M+FLK+CFGC+V EGYGMTE++C+IS ID+GD L GHVGSPN ACEIKLVDVPEM
Sbjct: 426 LSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLVDVPEM 485

Query: 483 NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           NYTS+DQP+PRGEICVRGP+VF+GY+K+E QTR+VID DGWLHTGDIG WLPGGRLKIID
Sbjct: 486 NYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLKIID 545

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
           RKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+YGDS N+ LVA+V+VD D LK WAAS
Sbjct: 546 RKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNASLVAVVSVDHDNLKAWAAS 605

Query: 603 QGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPT 662
           +GI + DL QLCNDP+ARAAVLAEM+A G+E QLRGFE+ KAVTL+ EPF++ENGLLTPT
Sbjct: 606 EGIMYNDLAQLCNDPKARAAVLAEMDAAGREAQLRGFEFVKAVTLVLEPFTLENGLLTPT 665

Query: 663 FKIKRPQAKERFAKAISNMYAELATSDQIPQKT 695
           FK+KRPQAKE FAKAIS+MY+EL+ +D   QKT
Sbjct: 666 FKVKRPQAKEYFAKAISDMYSELSRTDT-SQKT 697

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	698
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.989	0.987	0.738	5.6e-290
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.981	0.977	0.725	2.1e-281
UNIPROTKB|E2R463	698	ACSL5 "Uncharacterized protein	0.815	0.815	0.454	3.5e-137
UNIPROTKB|F1Q0U3	683	ACSL5 "Uncharacterized protein	0.815	0.833	0.454	3.5e-137
UNIPROTKB|Q1LZF6	683	ACSL5 "Acyl-CoA synthetase lon	0.810	0.828	0.450	4.5e-137
ZFIN|ZDB-GENE-050809-115	697	acsl1 "acyl-CoA synthetase lon	0.812	0.813	0.470	2e-136
RGD|69402	683	Acsl5 "acyl-CoA synthetase lon	0.815	0.833	0.447	1.6e-134
RGD|69403	697	Acsl6 "acyl-CoA synthetase lon	0.810	0.812	0.462	2e-134
MGI|MGI:1919129	683	Acsl5 "acyl-CoA synthetase lon	0.813	0.831	0.448	4.1e-134
UNIPROTKB|Q9ULC5	683	ACSL5 "Long-chain-fatty-acid--	0.813	0.831	0.457	5.4e-134

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 2785 (985.4 bits), Expect = 5.6e-290, P = 5.6e-290
 Identities = 513/695 (73%), Positives = 593/695 (85%)

Query:     4 SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
             S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct:     5 SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query:    60 RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLXXXXXXXXXXXXYKWMTYGEV 119
             RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYL            Y WMTYGE 
Sbjct:    65 RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query:   120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
             ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct:   125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query:   180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
             VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct:   185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query:   240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
              SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct:   245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query:   300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
             Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct:   305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query:   360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
             GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct:   365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query:   420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
             ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct:   425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query:   480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
             PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
             IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query:   600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
             AAS+GIK+E L QLCNDPR R  VLAEM+ +G+E QLRGFE+AKAVTL+PEPF++ENGLL
Sbjct:   605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLL 664

Query:   660 TPTFKIKRPQAKERFAKAISNMYAELATSDQIPQK 694
             TPTFKIKRPQAK  FA+AIS MYAE+A S+ IP K
Sbjct:   665 TPTFKIKRPQAKAYFAEAISKMYAEIAASNPIPSK 699

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 2704 (956.9 bits), Expect = 2.1e-281, P = 2.1e-281
 Identities = 498/686 (72%), Positives = 585/686 (85%)

Query:     4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSAR 63
             ++A+RR  A+  HL  T++     L  N T G F    GYSV LPEKL TG WNVYRSA+
Sbjct:    10 AAARRRINAIHSHLV-TSSRSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAK 68

Query:    64 SPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLXXXXXXXXXXXXYKWMTYGEVSAAR 123
             SP  LV RFPDHP+I TLHDNF +AV ++ DYKYL            YKWMTYGE   AR
Sbjct:    69 SPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTAR 128

Query:   124 KEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNH 183
               +GSGL+ HG+  G  +G+Y INRPEWLIVDHACS+YSY+SVPLYDTLGPDAVK++VNH
Sbjct:   129 TALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNH 188

Query:   184 AEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG 243
             A ++AIFC+ +TLN+LLS +SE+PSV L+VVVGG  E LPSLPS+SGVK++SY  L +QG
Sbjct:   189 ATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQG 248

Query:   244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSY 303
              S+PQ F PPKP+D+ATICYTSGTTGTPKG VLTH NLI+NVAG S  V+F+ SD+Y+SY
Sbjct:   249 RSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISY 308

Query:   304 LPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITN 363
             LPLAHIYERANQI++VY+GVAVGFYQGDN+KL+DDLA L+PT+F SVPRLYNRIYAGI N
Sbjct:   309 LPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIIN 368

Query:   364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
             AVK SG L+E+LF AAYN+KKQA+++G++ S +WDRLVFNKI++RLGGRVRFM SGASPL
Sbjct:   369 AVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPL 428

Query:   424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMN 483
             SP+VM+FLKVCFG +V EGYGMTETSC+IS +D+GDNL+GHVGSPNPACE+KLVDVPEMN
Sbjct:   429 SPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMN 488

Query:   484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
             YTS DQPHPRGEICVRGPI+F GYYK+E+QT+EVID DGWLHTGDIGLWLPGGRLKIIDR
Sbjct:   489 YTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDR 548

Query:   544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603
             KKNIFKLAQGEY+APEKIENVYAKCKFV QCFIYGDSFNS LVA+V+VDPDVLK WAAS+
Sbjct:   549 KKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASE 608

Query:   604 GIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTF 663
             GIK  DL +LCN+PR +AAVL++M+ VG+E QLRGFE+AKAVTL+ EPF++ENGLLTPTF
Sbjct:   609 GIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTF 668

Query:   664 KIKRPQAKERFAKAISNMYAELATSD 689
             KIKRPQAKE FA+AI+NMY EL  SD
Sbjct:   669 KIKRPQAKEYFAEAITNMYKELGASD 694

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1324 (471.1 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 266/585 (45%), Positives = 372/585 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGV--RIGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   120 YKWLSYRQVSDRAEYLGSCLLHKGYEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPL 179

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ Y+VN A+I A+ C  PQ  +TL+  + +   P + +I+++   ++ L   
Sbjct:   180 YDTLGAEAIIYIVNKADIAAVICDTPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKER 239

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 G++++S    +  G  + +   PP+PED++ IC+TSGTTG PKGA+LTH N+ISNV
Sbjct:   240 AEKCGIEILSLFDAEILGKENFRKPVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNV 299

Query:   286 AGFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             + F   +++     P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L +DL  
Sbjct:   300 SSFLKCMEYTFKPTPEDVTISYLPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKT 359

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FPSVPRL NRIY  + N  K    L++ L   A + K   +  G      +WD+L
Sbjct:   360 LKPTLFPSVPRLLNRIYDKVQNEAKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKL 417

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+  LGGR+ F+ +GA+P+S  V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   418 IFAKIQATLGGRINFVVTGAAPISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDW 477

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY S +     GEIC++G  VF+GY K+  +T+E +D 
Sbjct:   478 TSGHVGVPLACNHVKLEDVPDMNYFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDE 534

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + V Q F++GDS
Sbjct:   535 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDS 594

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
               S LV +V  DP+VL  + A  G+K   LE+LC +   R A+L ++  VGK+G L+ FE
Sbjct:   595 LRSSLVGVVVPDPEVLPSFVAKLGVK-GSLEELCKNNNVREAILEDLQKVGKDGGLKSFE 653

Query:   641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
               K + L  EPFS+ENGLLTPT K KR +  + F   I+++Y  +
Sbjct:   654 QVKNIFLQLEPFSIENGLLTPTLKAKRGELSKYFRTQINSLYENI 698

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1Q0U3 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1324 (471.1 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 266/585 (45%), Positives = 372/585 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGV--RIGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YKWLSYRQVSDRAEYLGSCLLHKGYEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ Y+VN A+I A+ C  PQ  +TL+  + +   P + +I+++   ++ L   
Sbjct:   163 YDTLGAEAIIYIVNKADIAAVICDTPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKER 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 G++++S    +  G  + +   PP+PED++ IC+TSGTTG PKGA+LTH N+ISNV
Sbjct:   223 AEKCGIEILSLFDAEILGKENFRKPVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNV 282

Query:   286 AGFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             + F   +++     P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L +DL  
Sbjct:   283 SSFLKCMEYTFKPTPEDVTISYLPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKT 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FPSVPRL NRIY  + N  K    L++ L   A + K   +  G      +WD+L
Sbjct:   343 LKPTLFPSVPRLLNRIYDKVQNEAKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+  LGGR+ F+ +GA+P+S  V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   401 IFAKIQATLGGRINFVVTGAAPISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDW 460

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY S +     GEIC++G  VF+GY K+  +T+E +D 
Sbjct:   461 TSGHVGVPLACNHVKLEDVPDMNYFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDE 517

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + V Q F++GDS
Sbjct:   518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDS 577

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
               S LV +V  DP+VL  + A  G+K   LE+LC +   R A+L ++  VGK+G L+ FE
Sbjct:   578 LRSSLVGVVVPDPEVLPSFVAKLGVK-GSLEELCKNNNVREAILEDLQKVGKDGGLKSFE 636

Query:   641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
               K + L  EPFS+ENGLLTPT K KR +  + F   I+++Y  +
Sbjct:   637 QVKNIFLQLEPFSIENGLLTPTLKAKRGELSKYFRTQINSLYENI 681

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)]

 Score = 1324 (471.1 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
 Identities = 262/582 (45%), Positives = 371/582 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YRWLSYKQVSDRAEYLGSCLLHKGYKPSQESFVGIFAQNRPEWVISEFACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +AV Y++N A+I  + C  PQ    L+S + +   P + L++++   ++ L   
Sbjct:   163 YDTLGAEAVIYIINKADIAMVICDTPQKALVLISNVEKGLTPGLKLVILMDPFEDDLKKR 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV+++S    ++ G  + +   PP PED++ IC+TSGTTG PKGA+LTH N++SN 
Sbjct:   223 GEKCGVEILSLFDAENLGKENFRKPVPPAPEDLSIICFTSGTTGDPKGAMLTHANIVSNA 282

Query:   286 AGFSLMVQ--FYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF   ++  F P+  D+ +SYLPLAH++ER  Q++   YG  VGF+QGD   L DD+  
Sbjct:   283 SGFLKCMEGVFEPNPEDVCISYLPLAHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRT 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FP+VPRL N++Y  + N  K    L++ L   A  SK + +  G      +WD+L
Sbjct:   343 LKPTLFPTVPRLLNKVYDKVQNEAKTP--LKKFLLNLAVASKFREVKRGIIRRDSLWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+E LGG+VR + +GA+P+SP V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   401 IFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDW 460

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY + +     GEIC+RG  VF+GY K   +T+E +D 
Sbjct:   461 KSGHVGVPMACNHVKLEDVPDMNYFAVNN---EGEICIRGHNVFKGYLKEPEKTQETLDK 517

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LK+IDRKKNIFKLAQGEY+APEKIE VY +   V Q F++G+S
Sbjct:   518 DGWLHTGDIGRWLPNGTLKVIDRKKNIFKLAQGEYIAPEKIETVYIRSSLVSQIFVHGES 577

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
               S LV +V  DPD L  +AA  G+K   +E+LC +   + A+L +M+ +G +G L+ FE
Sbjct:   578 LQSFLVGVVVPDPDALPPFAAKIGVK-GSIEELCQNQTIKKAILEDMHKIGIDGGLKSFE 636

Query:   641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY 682
               K + L PEPFS+ENGLLTPT K KR    + F   I ++Y
Sbjct:   637 QVKCIHLHPEPFSIENGLLTPTLKAKRGDLAKHFGTQIKSLY 678

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-050809-115 acsl1 "acyl-CoA synthetase long-chain family member 1" [Danio rerio (taxid:7955)]

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 276/586 (47%), Positives = 376/586 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHG-LQKGVR-IGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y EV+   +  GS LL  G  Q G + IG++  NRPEW I + AC  YS ++VPL
Sbjct:   118 YKWLSYKEVADRAEFAGSALLHRGHSQSGDKYIGIFAQNRPEWTISELACYTYSLVAVPL 177

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFIS-EIPSVHLIVVVGGKDEHLPSLP 226
             YDTLG +A+ YV++ A I  I C I      +L  +S    SV  IV++   D  L +  
Sbjct:   178 YDTLGTEAISYVIDKASITTIICDIADKARLILDCVSGRKHSVTTIVIMESFDSELTAQA 237

Query:   227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
                G+ +IS  +L++ G ++ +   PPKPED+A IC+TSGTTG PKGA+LTHGN++SN +
Sbjct:   238 QNCGIDIISLKELEAIGKANHKTPIPPKPEDLALICFTSGTTGNPKGAMLTHGNVVSNCS 297

Query:   287 GFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
              F  + + +     +DI++SYLPLAH++ER  + V + +G  +G++QGD   LMDDL  L
Sbjct:   298 AFIKITEVHCMLNQTDIHISYLPLAHMFERVVEGVLLCHGAKIGYFQGDIRLLMDDLKNL 357

Query:   343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT-PSKMWDRLV 401
             KPTIFP VPRL NR++  I    +A+  L+  L   A + K+  + SG      MWD+L+
Sbjct:   358 KPTIFPVVPRLLNRMFDKIFG--QANTPLKRWLLDFATSRKEAELKSGVVRKDSMWDKLI 415

Query:   402 FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETS--CIISAIDKGD 459
             F+K++  LGGRVR M +GA+P+SP V+ FL+   GCQ  EGYG TE +  C +S    GD
Sbjct:   416 FSKVQASLGGRVRLMITGAAPVSPTVLTFLRAALGCQFYEGYGQTECTAGCTMSL--PGD 473

Query:   460 NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
               +GHVG+P P   +KLVDV EMNY + +     GE+CV+GP VFQGY K+  QT   +D
Sbjct:   474 WTAGHVGAPLPCNFVKLVDVAEMNYFAANG---EGEVCVKGPNVFQGYLKDPEQTSGAVD 530

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
               GWLHTGDIG WLP G LKIIDRKK+IFKLAQGEY+APEKIEN+Y +   V Q F++GD
Sbjct:   531 KAGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYIRSDPVAQVFVHGD 590

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
             S  +CLV +V  DPD L  WA ++GI+      LC     + A+L +M  +GKE  L+ F
Sbjct:   591 SLQACLVGVVVPDPDFLPGWAKNRGIE-GSFNDLCKSKEVKNAILEDMIQLGKEAGLKSF 649

Query:   640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             E  + + L  E FSV+NGLLTPT K KR + K RF + I  +YA++
Sbjct:   650 EQVRDIALHLEMFSVQNGLLTPTLKAKRTELKSRFREQIDQLYAKI 695

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|69402 Acsl5 "acyl-CoA synthetase long-chain family member 5" [Rattus norvegicus (taxid:10116)]

 Score = 1299 (462.3 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
 Identities = 262/585 (44%), Positives = 374/585 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      IG++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YKWISYKQVSDRAEYLGSCLLHKGYKPSQDQFIGIFAQNRPEWVISELACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ YV+N A+I  + C  PQ    L+  + +   P +  ++++   D+ L   
Sbjct:   163 YDTLGAEAIIYVINRADISVVICDTPQKATMLIENVEKDLTPGLKTVILMDPFDDDLMKR 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 G++++S    ++ G  + +   PP PED++ IC+TSGTTG PKGA+LTH N++SN+
Sbjct:   223 GEKCGIEMLSLHDAENLGKENFKKPMPPNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNM 282

Query:   286 AGFSLMVQ--FYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             A F   ++  F P+  D+ +SYLPLAH++ER  Q V    G  +GF+QGD   L DD+  
Sbjct:   283 AAFLKFLEPIFQPTPEDVTISYLPLAHMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKA 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FP+VPRL NR+Y  + N  K    L++ L   A  SK   + +G    + +WD+L
Sbjct:   343 LKPTVFPTVPRLLNRVYDKVQNEAKTP--LKKFLLNLAIISKFNEVRNGIIRRNSLWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             VF+KI+  LGG+VR M +GA+P+S  V+ F +   GC V E YG TE +   S    GD 
Sbjct:   401 VFSKIQSSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDW 460

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              +GHVG+P     +KL DV +MNY S +     GEIC++G  VF+GY K+  +T+EV+D 
Sbjct:   461 TAGHVGTPVSCNFVKLEDVADMNYFSVNN---EGEICIKGNNVFKGYLKDPEKTQEVLDK 517

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIENVY++ + +LQ F++G+S
Sbjct:   518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYSRSRPILQVFVHGES 577

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE 640
               S L+ +V  DP+ L  +AA  G+K    E+LC +   + A+L ++  VGKEG L+ FE
Sbjct:   578 LRSFLIGVVVPDPESLPSFAAKIGVK-GSFEELCQNQCVKKAILEDLQKVGKEGGLKSFE 636

Query:   641 YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
               K++ + PEPFS+ENGLLTPT K KR +  + F   I ++Y  +
Sbjct:   637 QVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0007584 "response to nutrient" evidence=IEP

GO:0008654 "phospholipid biosynthetic process" evidence=IGI

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=IDA

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IDA

GO:0015908 "fatty acid transport" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IGI

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0070723 "response to cholesterol" evidence=IEP

RGD|69403 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Rattus norvegicus (taxid:10116)]

 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 270/584 (46%), Positives = 377/584 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y EV+   + +GSGLL H  + G    IG++  NRPEW+I + AC  YS + VPL
Sbjct:   118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query:   169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
             YDTLGP +++Y++N A+I   I   P     LL  +   E P + L++++   D+ L   
Sbjct:   178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV + S   ++  G  + +   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct:   238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query:   286 AGFSLMV--QFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF  +   Q+ P+  D++ SYLPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct:   298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
             L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct:   358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct:   416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query:   461 LSGHVGSPNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
              SGHVG+P P   IKLVD  E+NY TS+ +    GEICV+GP VF+GY K+E +T+E +D
Sbjct:   476 TSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEALD 531

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
              DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GD
Sbjct:   532 SDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGD 591

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
             S  + LV IV  DP+V+  WA  +GI+  + ++LC     + A+L +M  +GKE  L  F
Sbjct:   592 SLKAFLVGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHSF 650

Query:   640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA 683
             E  KA+ +  + FSV+NGLLTPT K KRP+ +E F K I  +Y+
Sbjct:   651 EQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IGI;ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0007405 "neuroblast proliferation" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008654 "phospholipid biosynthetic process" evidence=IMP

GO:0009629 "response to gravity" evidence=IEP

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=IMP

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IGI

GO:0010976 "positive regulation of neuron projection development" evidence=IMP

GO:0015908 "fatty acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO;IDA

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0048666 "neuron development" evidence=IEP

MGI|MGI:1919129 Acsl5 "acyl-CoA synthetase long-chain family member 5" [Mus musculus (taxid:10090)]

 Score = 1295 (460.9 bits), Expect = 4.1e-134, Sum P(2) = 4.1e-134
 Identities = 263/586 (44%), Positives = 376/586 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YKWISYKQVSDRAEYLGSCLLHKGYKSSQDQFVGIFAQNRPEWVISELACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ +V+N A+I  + C  PQ    L+  + +   P +  I+++   D+ L   
Sbjct:   163 YDTLGTEAIIFVINRADIPVVICDTPQKATMLVENVEKGLTPGLKTIILMDPFDDDLMKR 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV+++S    ++ G  + +   PPKPED++ IC+TSGTTG PKGA+LTH N++SN+
Sbjct:   223 GEKCGVEMLSLHDAENIGKENFKKPVPPKPEDLSVICFTSGTTGDPKGAMLTHENVVSNM 282

Query:   286 AGFSLMVQ--FYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             A F   ++  F P+  D+ +SYLPLAH++ER  Q +    G  +GF+QGD   L DD+  
Sbjct:   283 AAFLKFLEPIFQPTSDDVTISYLPLAHMFERLVQGILFSCGGKIGFFQGDIRLLPDDMKA 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FP+VPRL NR+Y  + N  K    L++ L   A  SK   + +G      +WD+L
Sbjct:   343 LKPTVFPTVPRLLNRVYDKVQNEAKTP--LKKFLLNLAIISKFNEVKNGIIRRDSLWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             VF+KI+  LGG+VR M +GA+P+S  V+ F +   GC V E YG TE +   S    GD 
Sbjct:   401 VFSKIQGSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDW 460

Query:   461 LSGHVGSPNPACE-IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
              +GHVG+P  AC  +KL DV +MNY S +     GEIC++G  VF+GY K+  +T+EV+D
Sbjct:   461 TAGHVGTP-VACNFVKLEDVADMNYFSVNN---EGEICIKGNNVFKGYLKDPEKTQEVLD 516

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
              DGWLHTGDIG WLP G LKI+DRKKNIFKLAQGEY+APEKIENVY++ + VLQ F++G+
Sbjct:   517 KDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGE 576

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
             S  S L+ +V  DPD L  +AA  G+K    E+LC +   + A+L ++  +GKEG L+ F
Sbjct:   577 SLRSFLIGVVVPDPDSLPSFAAKIGVK-GSFEELCKNQCVKEAILEDLQKIGKEGGLKSF 635

Query:   640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             E  K++ + PEPF++ENGLLTPT K KR +  + F   I ++Y  +
Sbjct:   636 EQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=ISO

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=ISO

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=ISO

GO:0015908 "fatty acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

UNIPROTKB|Q9ULC5 ACSL5 "Long-chain-fatty-acid--CoA ligase 5" [Homo sapiens (taxid:9606)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 268/586 (45%), Positives = 373/586 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLGP+A+ ++VN A+I  + C  PQ    L+  + +   PS+ +I+++   D+ L   
Sbjct:   163 YDTLGPEAIVHIVNKADIAMVICDTPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQR 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                SG++++S    ++ G    +   PP PED++ IC+TSGTTG PKGA++TH N++SN 
Sbjct:   223 GEKSGIEILSLYDAENLGKEHFRKPVPPSPEDLSVICFTSGTTGDPKGAMITHQNIVSNA 282

Query:   286 AGFSLMVQF-Y---PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             A F   V+  Y   P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L DD+  
Sbjct:   283 AAFLKCVEHAYEPTPDDVAISYLPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKT 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FP+VPRL NRIY  + N  K    L++ L   A +SK + +  G       WD+L
Sbjct:   343 LKPTLFPAVPRLLNRIYDKVQNEAKTP--LKKFLLKLAVSSKFKELQKGIIRHDSFWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI++ LGGRVR + +GA+P+S  VM F +   GCQV E YG TE +   +    GD 
Sbjct:   401 IFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDW 460

Query:   461 LSGHVGSPNPACE-IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
              SGHVG P  AC  +KL DV +MNY + +     GE+C++G  VF+GY K+  +T+E +D
Sbjct:   461 TSGHVGVPL-ACNYVKLEDVADMNYFTVNN---EGEVCIKGTNVFKGYLKDPEKTQEALD 516

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
              DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + VLQ F++G+
Sbjct:   517 SDGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGE 576

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
             S  S LV +V  D DVL  +AA  G+K    E+LC +   R A+L ++  +GKE  L+ F
Sbjct:   577 SLRSSLVGVVVPDTDVLPSFAAKLGVK-GSFEELCQNQVVREAILEDLQKIGKESGLKTF 635

Query:   640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL 685
             E  KA+ L PEPFS+ENGLLTPT K KR +  + F   I ++Y  +
Sbjct:   636 EQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LKS5	LACS7_ARATH	6, ., 2, ., 1, ., 3	0.7510	0.9899	0.9871	yes	no
Q9JID6	ACSL1_CAVPO	6, ., 2, ., 1, ., 3	0.4421	0.8595	0.8595	yes	no
Q55DR6	FCSA_DICDI	6, ., 2, ., 1, ., 3	0.4297	0.8567	0.8965	yes	no
Q8LPS1	LACS6_ARATH	6, ., 2, ., 1, ., 3	0.7441	0.9727	0.9686	no	no
Q9P7D7	LCF2_SCHPO	6, ., 2, ., 1, ., 3	0.3051	0.9140	0.9259	yes	no
Q91WC3	ACSL6_MOUSE	6, ., 2, ., 1, ., 3	0.4536	0.8108	0.8120	yes	no
P39518	LCF2_YEAST	6, ., 2, ., 1, ., 3	0.3251	0.8567	0.8037	yes	no
P33121	ACSL1_HUMAN	6, ., 2, ., 1, ., 3	0.4347	0.8610	0.8610	yes	no
P33124	ACSL6_RAT	6, ., 2, ., 1, ., 3	0.4623	0.8108	0.8120	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.983
3rd Layer	6.2.1.3	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130195	long-chain acyl-CoA synthetase (EC-6.2.1.3) (696 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•	•		0.904
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•	•		0.900
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•	•		0.900
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	698
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-180
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-164
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-157
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-154
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-127
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-110
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-99
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-88
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	8e-76
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-68
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-66
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-59
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-53
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-53
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-52
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-49
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-47
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-46
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-42
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-42
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-40
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-40
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-39
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-38
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-38
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-37
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-37
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-36
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-36
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-34
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-33
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-33
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-32
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	6e-32
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	9e-32
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-31
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	9e-31
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-30
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	7e-30
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-29
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-28
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-28
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-28
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-28
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-28
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-27
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-27
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-27
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-27
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-26
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-26
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-25
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-25
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-25
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-24
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-24
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	6e-24
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-23
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-23
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-23
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-23
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-22
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-22
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	9e-22
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-21
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	5e-21
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	5e-21
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-20
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	9e-20
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	9e-20
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	6e-19
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-18
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-18
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-18
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	6e-18
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-17
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-17
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-17
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-17
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-17
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	5e-17
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-16
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-16
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	2e-16
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	6e-16
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	9e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-15
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-15
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	7e-15
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	8e-15
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	8e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-14
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-14
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-14
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-13
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-13
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	8e-13
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-12
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	8e-12
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	9e-12
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-11
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-11
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-11
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-11
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-11
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-11
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-10
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-10
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-10
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-10
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	7e-10
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	8e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-09
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-09
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	5e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-08
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-08
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-08
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-08
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-08
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	7e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-07
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-07
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	7e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	9e-07
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	3e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-06
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-06
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	6e-06
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	7e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	8e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-05
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-05
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-05
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	2e-05
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-05
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	4e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-05
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	6e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	7e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	7e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	8e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-04
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-04
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-04
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	6e-04
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-04
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	7e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	0.002
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.002
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.002
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	0.004
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 1348 bits (3492), Expect = 0.0
 Identities = 529/650 (81%), Positives = 593/650 (91%)

Query: 37  FVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYK 96
           FV  QGYSV LPEKLQTGKWNVYRSARSPL LV RFPDHPEIGTLHDNF+YAVE + DYK
Sbjct: 2   FVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYK 61

Query: 97  YLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156
           YLGTR+RVDGTVG YKWMTYGE   AR  IGSGL+ HG+ KG  +GLY INRPEWLIVDH
Sbjct: 62  YLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDH 121

Query: 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVG 216
           ACSAYSY+SVPLYDTLGPDAVK++VNHAE+ AIFC+PQTLNTLLS +SEIPSV LIVVVG
Sbjct: 122 ACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVG 181

Query: 217 GKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVL 276
           G DE LPSLPS +GV++++Y +L +QG SSPQPF PPKPED+ATICYTSGTTGTPKG VL
Sbjct: 182 GADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVL 241

Query: 277 THGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM 336
           THGNLI+NVAG SL  +FYPSD+++SYLPLAHIYER NQIV ++YGVAVGFYQGDNLKLM
Sbjct: 242 THGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLM 301

Query: 337 DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
           DDLA L+PTIF SVPRLYNRIY GITNAVK SG L+E+LF AAYN+KKQA+ +G+ PS M
Sbjct: 302 DDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361

Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID 456
           WDRLVFNKI+ +LGGRVRFM SGASPLSPDVM+FL++CFG +V+EGYGMTETSC+IS +D
Sbjct: 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMD 421

Query: 457 KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE 516
           +GDNLSGHVGSPNPACE+KLVDVPEMNYTSEDQP+PRGEICVRGPI+F+GYYK+EVQTRE
Sbjct: 422 EGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTRE 481

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           VID DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+
Sbjct: 482 VIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541

Query: 577 YGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQL 636
           YGDS NS LVA+V VDP+VLK WAAS+GIK+EDL+QLCNDPR RAAVLA+M+AVG+E QL
Sbjct: 542 YGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQL 601

Query: 637 RGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA 686
           RGFE+AKAVTL+PEPF+VENGLLTPTFK+KRPQAK  FAKAIS+MYAELA
Sbjct: 602 RGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651

Length = 651

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  824 bits (2130), Expect = 0.0
 Identities = 295/577 (51%), Positives = 374/577 (64%), Gaps = 41/577 (7%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G Y+W++Y EV      IGSGL   GL+ G +IG++  NRPEW+I + AC + S + VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
           YDTLG +A++Y++N  EI  +FC                                     
Sbjct: 61  YDTLGEEAIEYILNETEISIVFC------------------------------------- 83

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
             VK+ S+ +L+  G  +  P  PPKPED+ATI YTSGTTG PKG +LTHGN+++ VAG 
Sbjct: 84  DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143

Query: 289 SLMV--QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTI 346
           + +V     P+D+Y+SYLPLAHI+ER  + V +Y G  +G+Y GD   L  D+  LKPT+
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203

Query: 347 FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ-TPSKMWDRLVFNKI 405
           F  VPR+ +RIY GI   V A G L+  LF  AYN K  A+  G    S +WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465
           +  LGGRVR M SG +PLSPD  +FL+V  GC V++GYG+TET    +  D GD  +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G P P CEIKLVDVPEM Y ++D P PRGEIC+RGP VF+GYYKN  +T E  D DGW H
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCL 585
           TGDIG WLP G LKIIDRKKN+FKL+QGEYVA EK+EN+Y     V Q  +YGDS  S L
Sbjct: 383 TGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442

Query: 586 VAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAV 645
           VAIV  D DVL+ WAA  G    D E+LCN+ + + A+L ++N +GKE  L+GFE  KA+
Sbjct: 443 VAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAI 502

Query: 646 TLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY 682
            L PEPF+ ENGLLTPTFK+KRPQ K+R+ K I  MY
Sbjct: 503 HLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  537 bits (1385), Expect = 0.0
 Identities = 276/641 (43%), Positives = 365/641 (56%), Gaps = 20/641 (3%)

Query: 58  VYRSARSPLTLVDRFPD-HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
           VYR+  S       FP    +I T  D F  +VE YPD K LG R  VDG VG Y W TY
Sbjct: 24  VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            EV     +IGS L   G + G R+G+Y  N P+W++   AC+A+S I VPLYDTLGP A
Sbjct: 80  KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139

Query: 177 VKYVVNHAEIEAIFCIPQTLNTLLSF-ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
           V Y+V+HAEI+ +F   + +  LL         +  IV      E      S  GVK  S
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS 199

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQF 294
           ++     G  +P    PPKP DI TI YTSGT+G PKG VLTH  + + V G  L M QF
Sbjct: 200 WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQF 259

Query: 295 ----YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSV 350
                  D+Y+S+LPLAHI +R  +      G +VG+Y GD   L DDL  LKPT+   V
Sbjct: 260 EDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGV 319

Query: 351 PRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG---QTPSKMWDRLVFNKIRE 407
           PR++ RI+ GI  A++     R  +F A Y  K   +  G   +  S M D L F K++ 
Sbjct: 320 PRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKA 379

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHV 465
           +LGGR+R + SG +PLS ++ +FL+V     V++GYG+TET    + +   D +   G V
Sbjct: 380 KLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGTV 438

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G+P    E++L +VPEM Y    +P PRGEICVRG  +F GYYKN   T EV+  DGW H
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFH 496

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCL 585
           TGDIG  LP G LKIIDRKKN+ KL+QGEYVA E +ENVY +   V   ++YGDSF S L
Sbjct: 497 TGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSML 556

Query: 586 VAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAV 645
           VA+V  + +    WA   G      E+LC+ P  +  +L+E+ +  ++ +LRGFEY K V
Sbjct: 557 VAVVVPNEENTNKWAKDNGFT-GSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGV 615

Query: 646 TLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA 686
            L  +PF VE  L+T T K +R    + +   I  MY +LA
Sbjct: 616 ILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKLA 656

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  537 bits (1384), Expect = 0.0
 Identities = 278/642 (43%), Positives = 376/642 (58%), Gaps = 27/642 (4%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
           VYRS  +   L+D  P   +I +    F  AV+ YP+ + LG R   D  VG Y W+TY 
Sbjct: 25  VYRSIYAKDGLLD-LPA--DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYK 81

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           EV  A   IGS +   G+  G R G+Y  N PEW+I   AC++     VPLYDTLG +AV
Sbjct: 82  EVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAV 141

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHL--IVVVGGKDEHLPSLPSTSGVKLIS 235
           ++++NHAE+   F     ++++LS + +  S +L  IV  G             GV   S
Sbjct: 142 EFIINHAEVSIAFVQESKISSILSCLPKCSS-NLKTIVSFGDVSSEQKEEAEELGVSCFS 200

Query: 236 ---YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
              +  + S  C  P    P +  DI TI YTSGTTG PKG +LT+  +I+ V     ++
Sbjct: 201 WEEFSLMGSLDCELP----PKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLL 256

Query: 293 QFY-----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
           +         D Y SYLPLAH+Y++  +   +  G ++GF+QGD   LM+D+  LKPTIF
Sbjct: 257 KVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIF 316

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG---QTPSKMWDRLVFNK 404
             VPR+Y+RIY GI   + + G LR+KLF  AYN K   +  G   +  S   DRLVF+K
Sbjct: 317 CGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDK 376

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-- 462
           I+E LGGRVR + SGA+PL   V +FL+V     + +GYG+TE SC        +  S  
Sbjct: 377 IKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTE-SCGGCFTSIANVFSMV 435

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G VG P    E +L  VPEM Y +     PRGEIC+RG  +F GY+K +  T EV+  DG
Sbjct: 436 GTVGVPMTTIEARLESVPEMGYDALSDV-PRGEICLRGNTLFSGYHKRQDLTEEVLI-DG 493

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN 582
           W HTGDIG W P G +KIIDRKKNIFKL+QGEYVA E +EN Y++C  +   ++YG+SF 
Sbjct: 494 WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFE 553

Query: 583 SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYA 642
           S LVA+V  D   L+DWAA+   K  D + LC + +AR  +L E+N+ GK+ QLRGFE  
Sbjct: 554 SFLVAVVVPDRQALEDWAANNN-KTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEML 612

Query: 643 KAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE 684
           KA+ L P PF +E  L+TPTFK+KRPQ  + +   I  +Y+E
Sbjct: 613 KAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSE 654

Length = 660

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  527 bits (1359), Expect = e-180
 Identities = 222/613 (36%), Positives = 326/613 (53%), Gaps = 38/613 (6%)

Query: 85  FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLY 144
               V++ PD   L  +       GG++ +TY E+    + + SGLL  G+  G R+ ++
Sbjct: 22  LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76

Query: 145 LINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFI 203
             NRPEW I D A  A   +SVP+Y T  P+ + Y++N +E + IF    + L+ +L  +
Sbjct: 77  AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136

Query: 204 SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQLQSQGCSSPQPFC---PPKPEDIA 259
            + P V  ++V+   D    ++ + + V  +     +      S        PPKP+D+A
Sbjct: 137 EDCPKVVDLIVI--IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLA 194

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIYMSYLPLAHIYERANQIVS 318
           TI YTSGTTGTPKG +LTH NL++ VAG   ++    P D  +S+LPLAHI+ERA +   
Sbjct: 195 TIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGL 254

Query: 319 VYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA 378
             YG     ++ D   L++DL  ++PT+   VPR++ ++Y GI   V  +  +R KLF  
Sbjct: 255 ALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRW 314

Query: 379 AYNSKKQ----AIVSGQTPSKM--WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
           A     +    A++ G   S +   DRLVF KIR+ LGGR+R+  SG +PLSP+++ F +
Sbjct: 315 ALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
              G  ++EGYG+TETS ++S       + G VG P P  E+K+ D              
Sbjct: 375 SL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 552
            GEI VRGP V +GYYKN   T E    DGW  TGD+G     G L I  RKK + KL+ 
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSN 479

Query: 553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG-IKFEDLE 611
           G+ +APE IE+  AK   + Q  + GD     LVA++  D D L+ WA S   +     E
Sbjct: 480 GKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASRE 538

Query: 612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK 671
           +L  DP+    +L  +N   K   L GFE  K   L+P+ F+ ENG LTPT K+KR    
Sbjct: 539 ELARDPKLLKLILPRVNKGNKR--LFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVIL 596

Query: 672 ERFAKAISNMYAE 684
           +R+   I  +Y+ 
Sbjct: 597 DRYKDEIEAVYSR 609

Length = 613

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  486 bits (1252), Expect = e-164
 Identities = 262/640 (40%), Positives = 378/640 (59%), Gaps = 26/640 (4%)

Query: 58  VYRSARSPLTLVDRFPDHPE-IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
           VYRS  +     D FP+  E + +  D F  +VE YP+   LG R  VDG  G Y W TY
Sbjct: 27  VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            EV     ++G+ L   G++   + G+Y  N PEW+I   AC+A+    VPLYDTLG  A
Sbjct: 83  QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142

Query: 177 VKYVVNHAEIEAIFC----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
           V+++++H+E+  +F     I +   T  +    + +V   V  GG          T G+ 
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTV---VSFGGVSREQKEEAETFGLV 199

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---- 288
           + ++ +    G          K  DI TI YTSGTTG PKG ++++ ++++ +AG     
Sbjct: 200 IYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLL 259

Query: 289 -SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
            S        D+Y+SYLPLAHI++R  +   + +G A+GF++GD   L++DL  LKPTIF
Sbjct: 260 KSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIF 319

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT---PSKMWDRLVFNK 404
            +VPR+ +R+Y+G+   +   G L++ +F +A++ K   +  GQ+    S + D+LVFNK
Sbjct: 320 CAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNK 379

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-- 462
           +++ LGG VR + SGA+PL+  V  FL+V   C V++GYG+TE SC  + +   D L   
Sbjct: 380 VKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML 438

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G VG P P  +I+L  VPEM Y +     PRGEIC+RG  +F GYYK E  T+EV+  DG
Sbjct: 439 GTVGPPVPNVDIRLESVPEMEYDALAST-PRGEICIRGKTLFSGYYKREDLTKEVLI-DG 496

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN 582
           WLHTGD+G W P G +KIIDRKKNIFKL+QGEYVA E IEN+Y + + V   ++YG+SF 
Sbjct: 497 WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE 556

Query: 583 SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYA 642
           S LVAI   +  +L+ WAA  G+   D   LC + +A+  +L E+  + KE +++GFE  
Sbjct: 557 SFLVAIANPNQQILERWAAENGVS-GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEII 615

Query: 643 KAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY 682
           KA+ L P PF +E  LLTPTFK KRPQ  + +   I  MY
Sbjct: 616 KAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY 655

Length = 666

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  462 bits (1191), Expect = e-157
 Identities = 186/561 (33%), Positives = 276/561 (49%), Gaps = 108/561 (19%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G ++ +T+ E++   + + +GL+  G++ G R+ +   NRPEW+I D A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
           Y T  P+ V Y++N                                              
Sbjct: 61  YPTSSPEEVAYILND--------------------------------------------- 75

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
           SG +++               F   KP+D+AT+ YTSGTTG PKG +LTH NL++  A  
Sbjct: 76  SGARVV---------------FVEDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAAL 120

Query: 289 SLMVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
             ++   P D  +S+LPLAH++E R  + + +  G  V F +     L++DL  ++PT+F
Sbjct: 121 LEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVF 179

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +VPR++ +IYAGI   V A+G L+ KLF  A                            
Sbjct: 180 FAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA---------------------------- 211

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
             GGR+RF  SG +PL P+V++F +   G  ++EGYG+TETS + +    GD   G VG 
Sbjct: 212 LGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGK 270

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P  E+++ +               GEI VRGP V +GYYKN   T E +D DGWLHTG
Sbjct: 271 PLPGVEVRIAED--------------GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTG 316

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVA 587
           DIG     G L I DRKK++   A G+ +AP+ IEN      ++ Q  + GD     L A
Sbjct: 317 DIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDD-RPYLTA 375

Query: 588 IVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTL 647
           ++ +DP+ L+ WA   G+ F     L  DP  RA +  E+       +L   E  K   L
Sbjct: 376 LIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEA--NARLARVEQIKKFVL 433

Query: 648 MPEPFSVENGLLTPTFKIKRP 668
           +P+ FS+E+G LTPT K++R 
Sbjct: 434 LPKEFSIEDGELTPTMKLRRR 454

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  462 bits (1190), Expect = e-154
 Identities = 233/642 (36%), Positives = 344/642 (53%), Gaps = 42/642 (6%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRV--------DG------TVGGYKWMTYGEVSAARKE 125
           TL   F  + + Y D + LGTR  +        DG       +G Y+W+TYG+V      
Sbjct: 59  TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCN 118

Query: 126 IGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
             SGL+  G  K  R+ ++   R EWLI    C   +   V +Y +LG +A+ + +N  E
Sbjct: 119 FASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETE 178

Query: 186 IEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC 244
           +  + C  + L  L+   S++ +V  +I +     +   SL  +S   + S+ +++  G 
Sbjct: 179 VTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGK 238

Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSY 303
            +P     P P DIA I YTSG+TG PKG ++THGN+++ VAG   +V +   +D+Y++Y
Sbjct: 239 ENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAY 298

Query: 304 LPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD-----------DLAVLKPTIFPSVPR 352
           LPLAHI E A + V    G A+G+  G  L L D           D + LKPT+  +VP 
Sbjct: 299 LPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPA 356

Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ-----TPSKM-WDRLVFNKIR 406
           + +R+  G+   V A G L +KLF  AY  ++ A + G         K+ WD LVF KIR
Sbjct: 357 ILDRVRDGVRKKVDAKGGLAKKLFDIAYK-RRLAAIEGSWFGAWGLEKLLWDALVFKKIR 415

Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-GHV 465
             LGGR+RFM SG +PLS D   F+ +C G  + +GYG+TET C  +   + D+ S G V
Sbjct: 416 AVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRV 474

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV--IDGDG- 522
           G P P C +KLV   E  Y   D+P PRGEI + GP V  GY+KN+ +T EV  +D  G 
Sbjct: 475 GPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGM 534

Query: 523 -WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF 581
            W +TGDIG + P G L+IIDRKK+I KL  GEYV+  K+E   +   +V    ++ D F
Sbjct: 535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF 594

Query: 582 NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEY 641
           +S  VA+V      L+ WA   GI + +  +LC    A   V   ++   K  +L  FE 
Sbjct: 595 HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEI 654

Query: 642 AKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA 683
              + L+PEP++ E+GL+T   K+KR Q +++F   +  +Y 
Sbjct: 655 PAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  392 bits (1010), Expect = e-127
 Identities = 202/599 (33%), Positives = 299/599 (49%), Gaps = 45/599 (7%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           +++TY E+       G GL   GL KG  + +Y   R EWL   +   + S ++  +Y  
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179

Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS---T 228
           LG DA+ Y +   E +AI C  + +  LL  +      +  ++      +L SLP+   T
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTII------YLDSLPASVDT 233

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPE---DIATICYTSGTTGTPKGAVLTHGNLISNV 285
            G +L+++  + ++G S+        PE   D+A I YTSGTTG PKG + THG+L + +
Sbjct: 234 EGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGI 293

Query: 286 AGFS-----LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD--- 337
                    L+      + Y SYLPLAHI E     + +  G  +GF  G    L D   
Sbjct: 294 LALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDTFA 351

Query: 338 ----DLAVLKPTIFPSVPRLYNRIYAGITNAVKAS----GTLREKLFTAAYNSKKQAIVS 389
               DL   +P     VPR    I+  I  AV+A     G+L+ ++F  AY S+ +A+  
Sbjct: 352 RPHGDLTEFRPVFLIGVPR----IFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407

Query: 390 GQ-TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET 448
           G+ TP   W+  VF+  R  LGGRVR M SG  PLS    +F+ V FG  V++G+G+TET
Sbjct: 408 GKDTP--YWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGM-VIQGWGLTET 464

Query: 449 SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY 508
            C       GD     VG      E+KL+D  E  +T  D P PRGEI +RGP +F+GYY
Sbjct: 465 VCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYY 522

Query: 509 KNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKC 568
           K E  TREV+D DGW HTGD+G     G L+II R K + K   GEY+A E +E +Y + 
Sbjct: 523 KQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQN 582

Query: 569 KFVLQ---CFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLA 625
           + V+    C +      S + A+V  D      +A   GI+ E    +  DP  +     
Sbjct: 583 ELVVPNGVCVLV-HPARSYICALVLTDEAKAMAFAKEHGIEGE-YPAILKDPEFQKKATE 640

Query: 626 EMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE 684
            +    +    + FE  + V ++ + ++ ENG+LT   K+KR    ER+A  I  ++A+
Sbjct: 641 SLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD 699

Length = 700

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  343 bits (881), Expect = e-110
 Identities = 188/577 (32%), Positives = 264/577 (45%), Gaps = 99/577 (17%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G +   T+ +V+   + I + L   GL+ G RI +   N  EW+I D A     ++SVPL
Sbjct: 2   GQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPL 61

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEH---LPSL 225
           Y TL  + ++YV+ H++ +A+F                        VG  D+       +
Sbjct: 62  YPTLTAETIRYVLEHSDAKALF------------------------VGKLDDWDAMKAGV 97

Query: 226 PSTSGVKLISYLQLQ------SQGCSSPQPFCP---PKPEDIATICYTSGTTGTPKGAVL 276
           P      ++                ++ +P      P+PED+ATI YTSGTTG PKG +L
Sbjct: 98  PEGLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157

Query: 277 THGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQG-DNLK 334
           + G       G   ++   P+D  +SYLPLAHI ER   +  S+Y G  V F +  D   
Sbjct: 158 SFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--T 215

Query: 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS 394
              DL   +PT+F SVPRL+ +   GI    K        L        K  I+S     
Sbjct: 216 FAADLQRARPTVFFSVPRLWTKFQQGILA--KLPPEKLNLLL-------KIPILS----- 261

Query: 395 KMWDRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS 453
                LV  KI + LG  + R  GSGA+P+ P ++ + +   G  + EGYGMTE     S
Sbjct: 262 ----SLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK-LGLPICEGYGMTEN-FAYS 315

Query: 454 AIDK-GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV 512
            ++  GD   G VG P P  E+K+         SED     GEI +R P +  GYYK+  
Sbjct: 316 TLNYPGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPE 361

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL 572
           +T E    DGWLHTGD G     G LKI  R K +FK ++G+YVAP  IEN+ +    V 
Sbjct: 362 KTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVE 421

Query: 573 QCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGK 632
           Q  + G       VA+V     VL + A               DP  R  V   +     
Sbjct: 422 QVCVVGSGLPQP-VALV-----VLSEAA---------------DPLEREEVEESLQQTLA 460

Query: 633 E--GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKR 667
           +   +L   E   A+ ++ E ++VENGLLTPT KIKR
Sbjct: 461 KVNSELESHERLSALVVVKEAWTVENGLLTPTLKIKR 497

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  310 bits (795), Expect = 6e-99
 Identities = 118/470 (25%), Positives = 186/470 (39%), Gaps = 66/470 (14%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+      + + L   G+  G R+ + L N PEW++   A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
           + + Y++  +E + +    + L  LL  + ++  +  +++VG             G  L 
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVG-----------DDGEGLD 109

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
                   G S+  P  P  P+D+A I YTSGTTG PKG +LTH NL++  AG +     
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169

Query: 295 YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK---LMDDLAVLKPTIFPSVP 351
            P D  +  LPL            +  G  +       L    L+D +   K T+   VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229

Query: 352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG 411
            L   +                                                 +    
Sbjct: 230 TLLRLLLKAPEEK------------------------------------------KYDLS 247

Query: 412 RVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETS--CIISAIDKGDNLSGHVGSP 468
            +R + SG  PL P+++    +   G  ++ GYG TET+     +     +   G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL--HT 526
            P  E+K++D           P   GE+C+RGP V +GY  +   T E    DGW    T
Sbjct: 308 LPGVEVKVLD----EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRT 363

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           GD+G W   G L+I+ RK +  K+  GE + P +IE V  +   V +  +
Sbjct: 364 GDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  287 bits (735), Expect = 1e-88
 Identities = 161/622 (25%), Positives = 253/622 (40%), Gaps = 113/622 (18%)

Query: 71  RFPDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIG 127
           R        TL      A    PD     +LG   R          +TY E+      + 
Sbjct: 3   RLMRMTAELTLASLLERAARRNPDRPALIFLGRGGR----------LTYRELDRRANRLA 52

Query: 128 SGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIE 187
           + L   G++ G R+ + L N PE+LI   A      ++VPL   L P  + Y++N A  +
Sbjct: 53  AALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAK 112

Query: 188 AIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
            +    +    L +    +P V ++++VG  D+ LP          I+   L ++G    
Sbjct: 113 VLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP----------ITLEALAAEGPGPD 162

Query: 248 QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--PSDIYMSYLP 305
               P  P+D+A + YTSGTTG PKG VLTH NL++N AG +  +     P D+ +S+LP
Sbjct: 163 ADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLP 222

Query: 306 LAHIYE-RANQIVSVYYGVAVGFYQG---DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           L HI+      +  +  G  +        D  +++  +   K T+   VP     +    
Sbjct: 223 LFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL---- 278

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
                    L                                   + L   +R + SG +
Sbjct: 279 ---------LDNPEK----------------------------DDDDLSSSLRLVLSGGA 301

Query: 422 PLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVD 478
           PL P++++  +  FG   ++EGYG+TETS +++    D      G VG P P  E+++VD
Sbjct: 302 PLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD 361

Query: 479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL 538
                   E  P   GEI VRGP V +GY+     T E  D DGWL TGD+G     G L
Sbjct: 362 PD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYL 417

Query: 539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDV 595
            I+ R K++     GE + PE+IE V A+   V +  + G   + +   +VA+V     V
Sbjct: 418 YIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVV-----V 471

Query: 596 LKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSV 654
           LK    ++    E+L                        +L  ++  + V  + E P   
Sbjct: 472 LKPGGDAELTA-EELRAFL------------------RKRLALYKVPRIVVFVDELP--- 509

Query: 655 ENGLLTPTFKIKRPQAKERFAK 676
                T + KI R   +E +  
Sbjct: 510 ----RTASGKIDRRALREEYRA 527

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  254 bits (651), Expect = 8e-76
 Identities = 178/614 (28%), Positives = 267/614 (43%), Gaps = 63/614 (10%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
            G+  +TY +   A ++     L  GL++   +G+   N PEW I          I+V +
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSVHLIVVVGGK-DEHLPSLP 226
           Y T  P+A +YV   +E   +       L  +L+   ++P +  I+       E  P   
Sbjct: 64  YTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEP--- 120

Query: 227 STSGVKLISYLQLQSQGCSSP-----QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
                 L S+ +    G S P           KP    T+ YTSGTTG PKG +L+H N+
Sbjct: 121 -----NLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175

Query: 282 ISNVAGFSLMVQFYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVG----FYQGDNLK- 334
                     +       +  +SYLPL+HI   A QI+ ++  ++VG    F Q D LK 
Sbjct: 176 TWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKG 232

Query: 335 -LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA------YNSKKQAI 387
            L+  L  ++PT F  VPR++ +I   +      S  L+ K+ + A       N K    
Sbjct: 233 TLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGG 292

Query: 388 VSGQTPSKMW-DRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM 445
            S          +LVF K+R+ LG  R +   +GA+P+S + ++F  +     +ME YGM
Sbjct: 293 ESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LSLNIPIMELYGM 351

Query: 446 TETS-CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVF 504
           +ETS     +  +   L    G   P CE K+ + P+ +          GEIC+ G  VF
Sbjct: 352 SETSGPHTVSNPQNYRL-LSCGKALPGCETKIHN-PDAD--------GIGEICIWGRHVF 401

Query: 505 QGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN- 563
            GY   E +T E ID DGWLH+GD+G     G L I  R K +   A GE V P  IE  
Sbjct: 402 MGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEA 461

Query: 564 VYAKCKFVLQCFIYGDS--FNSCLVAI-VAVDP------DVLKD----WAASQGIKFEDL 610
           V  +   +    + GD   F S L+ +   VDP      D L +    +    G     +
Sbjct: 462 VKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPETGEPLDNLTEEAIEFCRLLGSHATTV 521

Query: 611 EQLCN--DPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRP 668
            ++    DP    A+   +  V KE      +  K V L  + FSV  G L PT K+KRP
Sbjct: 522 SEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGPTMKLKRP 580

Query: 669 QAKERFAKAISNMY 682
              +++   I  +Y
Sbjct: 581 VVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  231 bits (592), Expect = 2e-68
 Identities = 156/589 (26%), Positives = 232/589 (39%), Gaps = 165/589 (28%)

Query: 81  LHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQK 137
           L D    A   +PD     + G            + +TY E+        + L   G++K
Sbjct: 1   LADLLERAARRFPDRPALTFFG------------RKLTYAELDELSDRFAAYLQQLGVKK 48

Query: 138 GVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN 197
           G R+ L L N P++ I          + VP+     P  +++ +N +  + +        
Sbjct: 49  GDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA----- 103

Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPED 257
                                               IS+    + G +         P+D
Sbjct: 104 ------------------------------------ISFEDALASG-APLPLPVELSPDD 126

Query: 258 IATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHIYERANQ 315
           +A + YT GTTG PKGA+LTH NL++NV   +  V+      D +++ LPL HI+     
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIF---GL 183

Query: 316 IVSVYYGVAVGFYQGDNLKLM---DDLAVLK------PTIFPSVPRLYNRIYAGITNAVK 366
            V     + +G   G    L+     + VLK       TIFP VP LYN +         
Sbjct: 184 TV----NMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNAL--------- 230

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
               L    F       K+   S                       +R   SG +PL  +
Sbjct: 231 ----LNHPEF-------KKYDFS----------------------SLRLCISGGAPLPVE 257

Query: 427 VMD-FLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMN 483
           V + F +   G  ++EGYG+TETS + +   +D G+   G +G P P  E+K+VD  E  
Sbjct: 258 VAERFEEK-TGAPLVEGYGLTETSPVTTVNPLD-GERKPGSIGLPLPGTEVKIVD-DE-- 312

Query: 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
             +E  P   GE+ VRGP V +GY+    +T EV+  DGWL TGDIG     G   I+DR
Sbjct: 313 -GNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDR 370

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD--------- 594
           KK++  +  G  V P +IE V      VL+             A+V V PD         
Sbjct: 371 KKDMI-IVGGFNVYPREIEEVLYSHPAVLEA------------AVVGV-PDPYRGEAVKA 416

Query: 595 --VLKDWAASQGIKFEDLEQLCND-------PRARAAVLAE--MNAVGK 632
             VLK+ A+   +  E+L   C +       PR +     E   +AVGK
Sbjct: 417 FVVLKEGAS---LTEEELIAFCRERLAAYKVPR-QVEFRDELPKSAVGK 461

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  226 bits (578), Expect = 6e-66
 Identities = 141/586 (24%), Positives = 238/586 (40%), Gaps = 118/586 (20%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+     +    +PD + +           G +  TY E+      + + L   G++KG 
Sbjct: 7   TIGRILRHGARKHPDKEAV--------YFDGRRT-TYAELDERVNRLANALRALGVKKGD 57

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ ++  N  E+L    A      +  P+   L P+ + Y++N AE   +    + +  L
Sbjct: 58  RVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLL 117

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
            + + ++P+V  ++V G          +    ++  Y +L     S    F      D A
Sbjct: 118 AAILPQLPTVRTVIVEGDGPA------APLAPEVGEYEEL-LAAASDTFDFPDIDENDAA 170

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            + YTSGTTG PKG VL+H NL  +       ++    D+Y+  +P+ H++      +++
Sbjct: 171 AMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLAL 230

Query: 320 YYG---VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLF 376
             G   V    +  +NL   D +   + T F +VP ++  +             L+    
Sbjct: 231 MAGAKQVIPRRFDPENLL--DLIETERVTFFFAVPTIWQML-------------LKAPR- 274

Query: 377 TAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM-DFLKVCF 435
                              +     F+ +R  +         G + L P ++ +F +  F
Sbjct: 275 ----------------AYFVD----FSSLRLVI--------YGGAALPPALLREFKEK-F 305

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGH------VGSPNPACEIKLVDVPEMNYTSEDQ 489
           G  +++GYGMTETS ++S +   D L G        G P P  E ++VD  + +    + 
Sbjct: 306 GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGD----EL 360

Query: 490 PHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           P      GEI VRGP + QGY+     T E IDG GWLHTGD+G     G L I DR K+
Sbjct: 361 PPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLHTGDVGYIDEDGYLYITDRIKD 419

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD-----------V 595
           +     GE + P ++E+       V +            VA++ V PD           V
Sbjct: 420 VIISG-GENIYPRELEDALYGHPAVAE------------VAVIGV-PDEKWGERPVAVVV 465

Query: 596 LKDWAASQGIKFEDLEQLCND-------PRARAAVLAEM--NAVGK 632
           LK  A    +  ++L             P+ R A + E+   +VGK
Sbjct: 466 LKPGAT---LDAKELRAFLRGRLAKFKLPK-RIAFVDELPRTSVGK 507

Length = 521

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  202 bits (517), Expect = 2e-59
 Identities = 102/364 (28%), Positives = 156/364 (42%), Gaps = 66/364 (18%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG VL+H NL++N    +  +     D+ +S LPL H+    + +
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 317 VS-VYYGVAVGFYQGDN--LKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           +  +  G  V  Y+G    L  ++ +   + T+   VP LY+ +                
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                A   +   + S                       +R + SG  PLSP++++  + 
Sbjct: 105 ---AKAAEDRGYDLSS-----------------------LRLLISGGEPLSPELLERFEE 138

Query: 434 CFGCQVMEGYGMTETSCIISAI-DKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
             G  ++EGYG+TETS + S   D      G VG P P  E+++VD        E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191

Query: 493 ---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
               GE+ VRGP V +GY+ N  +T      DGW  TGD+G     G L I  R K++ K
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIK 251

Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYG--DSFNSCLVAIVAV-------DPDVLKDWA 600
           +  GE V P ++E+V  +   V +  + G  D      +    V         + LK   
Sbjct: 252 VG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310

Query: 601 ASQG 604
             + 
Sbjct: 311 RERL 314

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  190 bits (486), Expect = 4e-53
 Identities = 117/472 (24%), Positives = 191/472 (40%), Gaps = 90/472 (19%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E++A  +   + L   G+ KG R+ ++  N P W+I          + VPL     
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D   Y++   + +A+F +   L    S  + +P++  +V+                 K+
Sbjct: 91  ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICE------TEEDDPHTEKM 144

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            ++    + G    +      P+D+A I +TSGTTG PKGA+LTH  L+SN A ++  + 
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL----------- 342
               D Y++  P  H++           G   G     N  LM    +L           
Sbjct: 204 LTEGDRYLAANPFFHVF-----------GYKAGV----NAPLMRGATILPLPVFDPDEVF 248

Query: 343 ------KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
                 + T+ P  P +YN +                                 Q P + 
Sbjct: 249 RLIETERITVLPGPPTMYNSLL--------------------------------QHPDRS 276

Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETS---CII 452
            + L            +R   +GA+ +   +++  +   G   V+ GYG++E S      
Sbjct: 277 AEDL----------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFN 326

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV 512
              D    ++G +G+     E K+V+        E      GE+ VRGP V +GYY +  
Sbjct: 327 RLDDDRKTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPE 382

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            T   ID DGWLHTGD+G     G L I+DRKK++F +  G  V P ++E V
Sbjct: 383 ATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF-IVGGFNVYPAEVEEV 433

Length = 513

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  190 bits (484), Expect = 7e-53
 Identities = 132/507 (26%), Positives = 202/507 (39%), Gaps = 94/507 (18%)

Query: 72  FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
            P      +L    +     + D   L     +D   G  + +TY E+    + + +GL 
Sbjct: 1   IPKDL---SLDSASLLFASEFGDRPAL-----IDAATG--RALTYAELERLVRRLAAGLA 50

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
             G +KG  + L   N  E+ +V  A  +   +         P  +   V  +  +    
Sbjct: 51  ARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAIT 110

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             +    L S      ++  +V++   D+              +   L       P P  
Sbjct: 111 TSELAEKLASL-----ALEPVVLLDSADDGS-----------AAIDDLLFADEPEP-PVV 153

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV--QFYPSDIYMSYLPLAHI 309
             K +D+A + Y+SGTTG  KG +LTH NLI+NVA         F   D+ +  LP+ HI
Sbjct: 154 VIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHI 213

Query: 310 YERANQIVSVYYG--------VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           Y     +  +           V +  +  D  K +  +   K T  P VP     I   +
Sbjct: 214 Y----GLTVILLALLRLGATVVVMPRF--DLEKFLAAIEKYKVTHLPVVPP----IVLAL 263

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
                                 K  IV                 +  L   ++ +GSGA+
Sbjct: 264 V---------------------KHPIVD----------------KYDLS-SLKQIGSGAA 285

Query: 422 PLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKLVD 478
           PL  ++ +  +  F G ++ +GYGMTE+S + +     + D   G VG   P  E K+VD
Sbjct: 286 PLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVD 345

Query: 479 VPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
            PE   T E  P    GE+ VRGP V +GY  N   T E ID DGWLHTGD+G +   G 
Sbjct: 346 -PE---TGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGY 401

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENV 564
           L I+DR K + K  +G  VAP ++E +
Sbjct: 402 LFIVDRLKELIKY-KGFQVAPAELEAL 427

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  184 bits (470), Expect = 2e-52
 Identities = 96/319 (30%), Positives = 141/319 (44%), Gaps = 59/319 (18%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY-ERA 313
           P+D A I YTSGTTG PKGA+LTH N+++N    +  +     D  +  +PL H++    
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 314 NQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
             + S+  G  +     F  G  L+L++     + T    VP ++  +            
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERE---RITALHGVPTMFIAL------------ 105

Query: 370 TLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
            L    F                 S                  +R   SG +P+ P+++ 
Sbjct: 106 -LEHPDFDKF-----------DLSS------------------LRTGISGGAPVPPELVR 135

Query: 430 FLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYT 485
            ++  F   ++  GYGMTETS + +     D        VG P P  E+K+VD P+    
Sbjct: 136 RIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD-PD---G 191

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
            E  P   GEICVRG  V +GYY +   T E ID DGWLHTGD+G     G L+I+ R K
Sbjct: 192 GEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIK 251

Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++     GE + P +IE  
Sbjct: 252 DMIIRG-GENIYPAEIEEA 269

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  185 bits (471), Expect = 1e-49
 Identities = 128/430 (29%), Positives = 210/430 (48%), Gaps = 22/430 (5%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYE 311
            P+ I +I YTSGT+G PKG +L++ NL + V       + + Y    ++SYLP++HIYE
Sbjct: 302 DPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYE 361

Query: 312 RANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
           R    +S   G  +  +  D      D+   K  I   VP+++NRIY  I   +     L
Sbjct: 362 RVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPL 421

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRL--VFNKIRERLGGRVRFMGSGASPLSPDVMD 429
           +  L     + +K    +    SK  + +  + +KI++++   +  + +G   LSP + +
Sbjct: 422 KRFLVKKILSLRKS--NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE 479

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSP-NPACEIKLVDVPEMNYTSED 488
            L V       +GYG+TET+  I      DN +  +G P +P  + K+       Y + D
Sbjct: 480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWE--TYKATD 537

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
              P+GE+ ++   +F GY+  + QT+     DG+  TGDI      G L  +DR K + 
Sbjct: 538 TL-PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV 596

Query: 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDV----LKD--WAAS 602
           KL+QGEY+  + + N+Y++  F+  C +YGD      +AI++VD  +    LKD     S
Sbjct: 597 KLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLES 656

Query: 603 QGIKFED-LEQL----CNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENG 657
            GI  ++ LE+L     N+      V  +M  V K+  L  +     + L  + +   N 
Sbjct: 657 TGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNN- 715

Query: 658 LLTPTFKIKR 667
            LTPTFK+KR
Sbjct: 716 YLTPTFKVKR 725

Length = 746

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  173 bits (441), Expect = 1e-47
 Identities = 110/390 (28%), Positives = 167/390 (42%), Gaps = 65/390 (16%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG VLTHGNL +N        ++  SD+ +  LPL H++   N +
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148

Query: 317 -VSVYYGVAVGFYQGDNLKLMDDLAVLKP-TIFPSVPRLYNRIYAGITNAVKASGTLREK 374
              ++ G +V F    + +  D L +L   T+F  VP +Y R+               E 
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC 434
              AA                +                 R   SG++ L   V++  +  
Sbjct: 198 DDAAA-----------AAARNL-----------------RLFVSGSAALPVPVLERWEER 229

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
            G  ++E YGMTET   +S    G+   G VG P P  E+++VD       +  +    G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286

Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK-NIFKLAQG 553
           EI VRGP VF  Y+     T E    DGW  TGD+G+    G  +I+ RK  +I K   G
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSG-G 345

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKDWAASQG 604
             V+  +IE    +   V +  + G     +   +VA+V      A+    L+ WA  + 
Sbjct: 346 YKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKL 405

Query: 605 IKFEDLEQLCNDPRARAAVLAEM--NAVGK 632
             ++  +++         V+ E+  NA+GK
Sbjct: 406 APYKIPKRVI--------VVDELPRNAMGK 427

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  170 bits (434), Expect = 4e-46
 Identities = 117/442 (26%), Positives = 183/442 (41%), Gaps = 68/442 (15%)

Query: 136 QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT 195
           ++G  IG+ L +     + + A      + V L  T G + ++     A I+ +      
Sbjct: 29  KEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVI----- 83

Query: 196 LNTLLSFISEIPSVHLIVVVGGKD----EHLPSLPSTSGV-KLISYLQLQSQGCSSPQPF 250
             T  +F+ ++    L+V++ G      E L      S   KL ++L  +          
Sbjct: 84  --TSRAFLEKLKLEGLVVLLEGVRIVYLEDL--RAKISKADKLKAFLAAKLPPALLRLFL 139

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
              KP+D A I +TSG+ G PKG VL+H NL++N+   + ++     D+ +  LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL---KPTIFPSVPRLYNRIYAGITNAVKA 367
                      G+ V       L L+  L V+    P     +  L   I        KA
Sbjct: 200 -----------GLTVTLL----LPLLTGLRVVYYPNPLDAKKIAEL---IRD-----YKA 236

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDV 427
           +       F   Y             ++      F+ +R         + +GA  L    
Sbjct: 237 TILCGTPTFLRGY-------------ARNAHPEDFSSLR--------LVVAGAEKLPEAT 275

Query: 428 MDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSE 487
            +  +  FG +++EGYG TE S +IS      N  G VG P P  E+++V       T E
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPE----THE 331

Query: 488 DQPHPR-GEICVRGPIVFQGYYKNEVQTREV-IDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
           + P    G + VRGP V  GY  NE +T EV + GDGW  TGDIG     G L I+ R K
Sbjct: 332 ELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLK 391

Query: 546 NIFKLAQGEYVAPEKIENVYAK 567
              K+  GE V+   +E + ++
Sbjct: 392 RFAKIG-GEMVSLTAVEELLSE 412

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  159 bits (405), Expect = 1e-42
 Identities = 110/495 (22%), Positives = 174/495 (35%), Gaps = 136/495 (27%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TYGE+  A   + + L   G++ G  +   L N  E+++V  AC+    +  P+     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + +++  A    +F +P                       G D              
Sbjct: 62  ERELGFILRQARARVLF-VPD-------------------EFRGFD-------------- 87

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
             Y  +               P+D+A + YTSGTTG PKG + TH  L++ V  +   + 
Sbjct: 88  --YAAM---------------PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD------LAVL---KP 344
             P D+ +   PLAHI           YG+ +    G  + L D       L ++     
Sbjct: 131 LTPDDVVLMPSPLAHI-------TGFLYGLELPLLLGATVVLQDRWDPARALELIREHGV 183

Query: 345 TIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNK 404
           T             A +  A  A+G     L                             
Sbjct: 184 TFTMGATPFL----ADLLAAADAAGPDLPSL----------------------------- 210

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK--GDNLS 462
                    R    G +P+  ++        G +V+  YGMTE   +         D  +
Sbjct: 211 ---------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRA 261

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVID 519
              G P P  E+++VD        +    P    GE+ VRGP +F GY        E   
Sbjct: 262 ATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYLDPP-DNTEAFT 313

Query: 520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
            DGW  TGD+G     G L+I  RKK+I  +  GE ++  +IE++  +   V +      
Sbjct: 314 DDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAE------ 366

Query: 580 SFNSCLVAIVAVDPD 594
                 VA+VA+ PD
Sbjct: 367 ------VAVVAM-PD 374

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  155 bits (394), Expect = 7e-42
 Identities = 109/376 (28%), Positives = 163/376 (43%), Gaps = 79/376 (21%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D A I +TSGTTG PKG  LTH NL+++    +   +  PSD  ++ +PL HI+    
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIH---G 57

Query: 315 QIVSVYY-----GVAV---GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            IVS+       G  V    F      K  DD+A  + T + +VP ++            
Sbjct: 58  LIVSLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH------------ 102

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                             Q ++    P+         K   RL    RF+ S ++PL P 
Sbjct: 103 ------------------QILLKTAKPNPG-------KPPPRL----RFIRSASAPLPPA 133

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           V+D L+  FG  V+E YGMTE +  I++  +       G VG P    E+ ++D      
Sbjct: 134 VLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVAILD------ 186

Query: 485 TSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
             + +P P    GEI +RGP V  GY  N    RE    DGW  TGD+G     G L + 
Sbjct: 187 -DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLT 244

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ--CF-----IYGDSFNS--CLVAIVAVD 592
            R K +     GE ++P ++E V  +   V +   F     +YG+   +   L A   V 
Sbjct: 245 GRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVT 303

Query: 593 PDVLKDWAASQGIKFE 608
            + L+D+A  +   F+
Sbjct: 304 IEELRDFARKRLAAFK 319

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  153 bits (389), Expect = 2e-40
 Identities = 96/497 (19%), Positives = 173/497 (34%), Gaps = 98/497 (19%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ ++      +   L   G++ G R+ L   N  E +++ HAC         L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
           +     +   +++ +      L     F ++  S+  I                    L 
Sbjct: 61  NERTNQLEDLDVQLLLT-DSLL-EEKDFQAD--SLDRI-----------EAAGRYETSLS 105

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
           +   +                + IAT+ +TSGTTG PK    T  N  ++  G    + F
Sbjct: 106 ASFNM----------------DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGF 149

Query: 295 YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY 354
              D ++  LPL HI   +     +  G  +      N +L++ +A  + T    VP   
Sbjct: 150 TEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQL 208

Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414
           NR+        +       +                                  LGG   
Sbjct: 209 NRL------LDEGGHNENLRKI-------------------------------LLGG--- 228

Query: 415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLSGHVGSPNPACE 473
                 S +   +++     +G  +   YGMTET S + +A  +  +    VG P    E
Sbjct: 229 ------SAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGRE 281

Query: 474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL 533
           IK+           D     GEI V+G  + +GY     +     +  GW +TGDIG   
Sbjct: 282 IKI---------KVDNKEGHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELD 331

Query: 534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVA 590
             G L ++ R+ ++  ++ GE + PE+IE V  +   + +  +       +    VA + 
Sbjct: 332 GEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390

Query: 591 VDPDVLKDWAASQGIKF 607
            +     D + ++ I +
Sbjct: 391 SE----SDISQAKLIAY 403

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  155 bits (394), Expect = 2e-40
 Identities = 128/514 (24%), Positives = 201/514 (39%), Gaps = 95/514 (18%)

Query: 87  YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI 146
           +A   + D       +      G     TY +     + + + L   G++ G R+     
Sbjct: 4   HAARYFGD-----REIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAW 58

Query: 147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SE 205
           N    L +  A      +   L   L P+ + Y++NHAE + IF +      LL  I   
Sbjct: 59  NTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIF-VDDDFLPLLEAIAPR 117

Query: 206 IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPED-IATICYT 264
           +P+V  +VV    D    SLP      + +Y +L  +   SP+   P   E+  A +CYT
Sbjct: 118 LPTVKAVVVYDDADMPETSLP-----NVYAYEELLEEE--SPEYEWPELDENTAAGLCYT 170

Query: 265 SGTTGTPKGAVLTHGNL------ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS 318
           SGTTG PKG V +H +L       +      L      SD  +  +P+ H     N    
Sbjct: 171 SGTTGNPKGVVYSHRSLVLHTLASALPDSLGLS----ESDTVLPVVPMFH----VNAWGL 222

Query: 319 VYYGVAVG---FYQGDNLKLMDDLAVL----KPTIFPSVPRLYNRIYAGITNAVKASGTL 371
            Y    VG      G  L     L  L    K T+   VP     I+ G+ N ++A+G  
Sbjct: 223 PYAATMVGAKLVLPGRYLDP-ASLLDLIEEEKVTVSAGVPT----IWLGLLNYLEANG-- 275

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
                                     D     +           +  G S L   +++ L
Sbjct: 276 -------------------------KDLSSLRR-----------VVVGGSALPRSLIEKL 299

Query: 432 KVCFGCQVMEGYGMTETSCIISA-----------IDKGDNLSGHVGSPNPACEIKLVDVP 480
           +   G +V+  +GMTETS + +             ++   L    G P P  E+++VD  
Sbjct: 300 EE-RGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-D 357

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           E N    D     GE+ VRGP V   YYK+  +T E+   DGW  TGD+ +    G ++I
Sbjct: 358 EGNELPWDGKTV-GELVVRGPWVTGSYYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQI 415

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
            DR K++ K + GE+++  ++EN       V + 
Sbjct: 416 TDRAKDVIK-SGGEWISSVELENALMAHPAVAEA 448

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  151 bits (383), Expect = 2e-39
 Identities = 62/153 (40%), Positives = 86/153 (56%), Gaps = 5/153 (3%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
           +R + SGA+PLS ++ + L+  F    + +GYGMTET    +    GD   G VG   P 
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
            E K+VD         ++   RGE+CV+GP + +GY  N   T+E ID DGWLHTGDIG 
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           +   G   I+DRKK + K  +G  V P ++E V
Sbjct: 382 FDEDGNFYIVDRKKELIKY-KGYQVPPAELEAV 413

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  150 bits (380), Expect = 2e-38
 Identities = 109/371 (29%), Positives = 160/371 (43%), Gaps = 78/371 (21%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSD--IYMSYLPLAHIY 310
           P P+D+A I YTSGTTG PKGA LTH NL +N A     V          ++ LP+ H Y
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAY 275

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDD------LAVLK---PTIFPSVPRLYNRIYAGI 361
                   +   + +    G  L L+        L  +K   PT  P VP LY +I    
Sbjct: 276 -------GLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEA- 327

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAI-VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
                               ++++ + +SG                      VR   SGA
Sbjct: 328 --------------------AEERGVDLSG----------------------VRNAFSGA 345

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDV 479
             L    ++  +   G  ++EGYG+TETS II      D+   G+VG P P  E+++VD 
Sbjct: 346 MALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD- 404

Query: 480 PEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL 538
           PE     E  P    GE+ VRGP VF+GY+    +T +    DGW  TGD+ +    G +
Sbjct: 405 PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFI 461

Query: 539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG----DSFNSCLVAIV----- 589
           +I+DR K +  +  G  V P ++E V  +   V    + G    D     + A+V     
Sbjct: 462 RIVDRIKELI-ITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA 520

Query: 590 AVDPDVLKDWA 600
           A+DP+ L+ + 
Sbjct: 521 ALDPEGLRAYC 531

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  146 bits (371), Expect = 4e-38
 Identities = 103/366 (28%), Positives = 150/366 (40%), Gaps = 75/366 (20%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG +LTH  L+      + ++   P D+ ++ LPL HI     Q 
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138

Query: 317 VSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY---AGITNAVKASGTLRE 373
            SVY  + VG        L     VL P    S  R ++++    A + N + A      
Sbjct: 139 YSVYAALLVG------ATL-----VLLPRFSAS--RFWDQVRKHGATVFNLLGAMA---- 181

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                       AI+  Q PS   DR             +RF+     PL   +    + 
Sbjct: 182 ------------AILMKQPPS-PDDR----------DHPLRFVFGA--PLPAAIWPAFEE 216

Query: 434 CFGCQVMEGYGMTETS-CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
            FG +++EGYGMTET   II+  D      G  G P P  E+++VD        + +  P
Sbjct: 217 RFGVKLVEGYGMTETGVPIIAPGDPA--PPGSCGRPRPGVEVRIVD-------EDGREVP 267

Query: 493 ---RGEICVR---GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
               GE+ VR      +F+GYY     T +     GW HTGD G     G L  +DRKK+
Sbjct: 268 PGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRN-GWFHTGDRGRRDEDGFLYFVDRKKD 326

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG--DSFNSCLVAIVAV-------DPDVLK 597
             +  +GE ++  ++E        V +  +           V  V V       DP+ L 
Sbjct: 327 AIR-RRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALL 385

Query: 598 DWAASQ 603
           ++   +
Sbjct: 386 EFCRDR 391

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  147 bits (372), Expect = 2e-37
 Identities = 138/504 (27%), Positives = 218/504 (43%), Gaps = 105/504 (20%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV---PL 168
           K +TYGE+    + + + L   GL KG R+ + + N  ++ +   A     Y+ V   PL
Sbjct: 47  KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIV--------------- 213
           Y    P  +++ +  +  EAI  +     T+   +++    H++V               
Sbjct: 107 YT---PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVN 163

Query: 214 -VVGGKDEHLP--SLPSTSGVKLISYLQLQSQGCSSPQPFCPPK--PEDIATICYTSGTT 268
            VV    + +P  SLP       + +    ++G    Q F P K  P+D+A + YT GTT
Sbjct: 164 FVVRRVKKMVPAWSLPGH-----VRFNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTT 216

Query: 269 GTPKGAVLTHGNLISNVAGFSLMVQ----FYPSD---IYMSYLPLAHIYERANQIVSVYY 321
           G  KGA L H N+++NV      +Q      P      ++  LPL HI+      V    
Sbjct: 217 GVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALT---VCGLL 273

Query: 322 GVAVGFYQGDNL---------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
           G+  G   G N+           + +L   +  IFP+V  LYN                 
Sbjct: 274 GMRTG---GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN----------------- 313

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                A  N+              +D+L F+K+    GG       G +   P    +L+
Sbjct: 314 -----ALLNNPD------------FDKLDFSKLIVANGG-------GMAVQRPVAERWLE 349

Query: 433 VCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP 490
           +  GC + EGYG++ETS + +   +D     SG +G P P+ E+ + D  + N     +P
Sbjct: 350 MT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP 406

Query: 491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
              GEIC+RGP V  GY+    +T +V+  DG+  TGD+G+    G  KI+DRKK++  L
Sbjct: 407 ---GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMI-L 462

Query: 551 AQGEYVAPEKIENVYAKCKFVLQC 574
             G  V P +IE V A    VL+ 
Sbjct: 463 VSGFNVYPNEIEEVVASHPGVLEV 486

Length = 557

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  144 bits (365), Expect = 3e-37
 Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 60/350 (17%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315
           +D+A I YTSGTTG PKG + TH  +++  A  +      P  + +++LPL H+      
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAG---- 139

Query: 316 IVSVYYGVAVGFYQGDNLKLM---DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
              +   +    Y G  L L+   D  A  +     ++ R     Y              
Sbjct: 140 ---MQGSMNAPIYTGATLVLLTRWDREAAAR-----AIER-----YRV------------ 174

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
               T   N     +     P             +     ++ +G G + L P V + LK
Sbjct: 175 ----THWTNIVTMVVDLLAHPR----------FADYDLSSLKVVGGGGAALPPAVAERLK 220

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
              G    EGYG+TET    +  +  D      +G P    + +++D PE   T E+ P 
Sbjct: 221 ALTGLLYEEGYGLTET-HTCTHFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEELPP 275

Query: 492 PR-GEICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
              GEI VRGP VF+GY+     T E    +DG  +  TGD+G     G    +DR K +
Sbjct: 276 GEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRM 335

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPD 594
                G  V P ++E +  +   VL+  + G         + A V + PD
Sbjct: 336 IN-VSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  144 bits (366), Expect = 1e-36
 Identities = 134/546 (24%), Positives = 217/546 (39%), Gaps = 91/546 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
            T+ E+      +   L   G+  G R+ + ++NR E++    A +    I+VP+   L 
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI-PSVHLIVVVGGKDEHLPSLPSTSGVK 232
           P  + ++V+      +      L  + + + +I P +  +VV GG         S   V 
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA-ALAPVATAVRDIVPLLSTVVVAGG--------SSDDSV- 152

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDI-ATICYTSGTTGTPKGAVLTHGNLISN-VAGFSL 290
            + Y  L ++   +  P     P D  A I YTSGTTG PKGAVLTH NL    +     
Sbjct: 153 -LGYEDLLAEAGPAHAPV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT 209

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFY---QGDNLKLMDDLAVLKPTIF 347
                 SD+    +PL HI    + +  +  G     Y     D  +L+D L   K T  
Sbjct: 210 NGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGI 269

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
             VP                              ++ QA+ + Q              R 
Sbjct: 270 FLVP------------------------------AQWQAVCAEQQA------------RP 287

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLS--GH 464
           R    +R +  GA+P S  ++  +   F   Q++  +G TE S +   +   D +   G 
Sbjct: 288 R-DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGS 346

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           VG   P    ++VD   MN   +      GEI  R P +  GY+ N   T E   G GW 
Sbjct: 347 VGKVIPTVAARVVD-ENMN---DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWF 401

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
           H+GD+      G + ++DRKK++  ++ GE +   ++ENV A    +++  + G   + +
Sbjct: 402 HSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADEKW 460

Query: 582 NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR------AAVLAEM--NAVGK- 632
               VA+ AV  D          +  EDL +   D  AR        ++  +  N  GK 
Sbjct: 461 GEVPVAVAAVRND-------DAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKV 513

Query: 633 -EGQLR 637
            + +LR
Sbjct: 514 LKTELR 519

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  144 bits (365), Expect = 2e-36
 Identities = 125/517 (24%), Positives = 189/517 (36%), Gaps = 100/517 (19%)

Query: 69  VDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGS 128
           V RFPD   +   H                  R             T+ +++ A   +  
Sbjct: 28  VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60

Query: 129 GLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           GLL  G+Q G R+G++  N  EWL+   A +    I V +        ++Y +  + +  
Sbjct: 61  GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120

Query: 189 IFCIP-----QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL--------PSTSGVKLIS 235
           + C            L   +   P +          E LP L            G     
Sbjct: 121 VICADAFKTSDYHAMLQELL---PGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWH 177

Query: 236 YLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
            LQ + +  S             +D   I YTSGTTG PKGA L+H N+++N    +  +
Sbjct: 178 ELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG---FYQGDNLKLMDDLAVLKPTIFPS 349
                D     +PL H +     +++    + VG    Y  +     D LA L+      
Sbjct: 238 GLTEHDRLCVPVPLYHCF---GMVLANLGCMTVGACLVYPNEAF---DPLATLQ------ 285

Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
                                + E+  TA Y      I     P     R  F+    R 
Sbjct: 286 --------------------AVEEERCTALYGVPTMFIAELDHP----QRGNFDLSSLRT 321

Query: 410 GGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH---V 465
           G     M    +P   +VM  +       +V   YGMTETS +       D+L      V
Sbjct: 322 G----IMA--GAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETV 375

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G   P  E+K+VD P+       +    GE+C RG  V +GY+ N   T E ID DGW+H
Sbjct: 376 GRTQPHLEVKVVD-PDGATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           TGD+      G ++I+ R K++  +  GE + P +IE
Sbjct: 432 TGDLATMDEQGYVRIVGRSKDMI-IRGGENIYPREIE 467

Length = 558

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  138 bits (350), Expect = 1e-34
 Identities = 100/486 (20%), Positives = 164/486 (33%), Gaps = 106/486 (21%)

Query: 105 DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI 164
           DG  G ++ +TYG++      + + L   G  KG R+ +Y+ N PE +I   A +    I
Sbjct: 32  DGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAI 91

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS---VHLIVVVGGKDEH 221
              +   L  +AV   +     + +     T            +   +  +VVV      
Sbjct: 92  PAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLW 151

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
                  +  K                 F P   +D   + YTSGTTG PKG V +HG  
Sbjct: 152 YDEAVEKASEKF---------------EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGY 196

Query: 282 ISNVAGFSLM--------VQFYPSDI-------YMSYLPLAH-----IYERANQIVSVYY 321
           +      +            +  SD        Y  + PLA      +Y+          
Sbjct: 197 LVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR-------- 248

Query: 322 GVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYN 381
                FY  +   L + L   K TIF + P    R+           G       +    
Sbjct: 249 ----PFYSPER--LWEALEKYKVTIFGTSPTFLRRL--------MKLGLGEPYDLS---- 290

Query: 382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVME 441
                                          +R +GS   PL+P+  ++     G  +++
Sbjct: 291 ------------------------------SLRVLGSAGEPLNPEAFEWFYSALGVWILD 320

Query: 442 GYGMTET-SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG 500
            YG TET    I+        +G  G P P   ++ VD  E N      P   GE+ VR 
Sbjct: 321 IYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVD-DEGN----PVPPGVGELVVRL 373

Query: 501 --PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP 558
             P +   Y+ +  + +E   G  +   GD       G   +  R  ++ K++ G+ + P
Sbjct: 374 PWPGMALTYWNDPERYKEAYFGRWYRT-GDWAERDEDGYFWLHGRSDDVIKVS-GKRIGP 431

Query: 559 EKIENV 564
            +IE+V
Sbjct: 432 LEIESV 437

Length = 528

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  134 bits (339), Expect = 2e-33
 Identities = 116/463 (25%), Positives = 183/463 (39%), Gaps = 87/463 (18%)

Query: 110 GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY 169
             K +T+ E+  A   +   L   G++KG R+ L + N  E ++V HA      ++V L 
Sbjct: 24  EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  + + + ++ AE++ +            F +++                       
Sbjct: 84  TRLSREELLWQLDDAEVKCLITDD-------DFEAKL----------------------I 114

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
               + + +L +      +       +++ATI YTSGTTG PKG + T+GN   +  G +
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174

Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFP 348
           L +     D +++ +P+ HI   +  + SV YG+ V   +  D  K+   L     TI  
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            V  +  R              L E+L    Y S                          
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSS------------------------- 255

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVC--FGCQVMEGYGMTETSCIISAIDKGDNLS--GH 464
                R M  G  P    +   L+ C   G  V + YGMTET+  I  +   D L+  G 
Sbjct: 256 ----FRCMLLGGGPAPKPL---LEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
            G P   CE+K+             P   GEI V+GP V +GY   E  TRE    DGW 
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQ-DGWF 362

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
            TGDIG     G L ++DR+ ++  ++ GE + P +IE V   
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLS 404

Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  134 bits (339), Expect = 3e-33
 Identities = 137/567 (24%), Positives = 207/567 (36%), Gaps = 140/567 (24%)

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
               +PL+ ++R                A + YPD     T V V G     ++ TY E 
Sbjct: 1   YVPLTPLSFLER----------------AAKVYPDR----TAV-VYGDR---RY-TYRET 35

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
               + + S L   G+ KG  + +   N P  L           + VPL   L  D + +
Sbjct: 36  YDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAF 95

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           ++NH+E + +F   + L+     ++ + +  +I             P+    +   Y  L
Sbjct: 96  ILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEII-----VISPAAEDSEEGDYEDL 150

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            + G   P P  P    D  ++ YTSGTTG PKG V TH     N  G  +        +
Sbjct: 151 LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPV 210

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDN-----------LKLMDDLAVLKPTIFP 348
           Y+  LP+ H     N     +   AVG   G +             L++   V   T   
Sbjct: 211 YLWTLPMFH----CNGWCFPWAITAVG---GTHVCLRKVDAPAIYDLIEKHKV---THLC 260

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
             P + N     + NA +A                 + + +G  P       V  K+ E 
Sbjct: 261 GAPTVLN----MLANAPEADK--------LPLPRPVRVMTAGAPPPPA----VIKKM-EE 303

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA---IDKGDNLS--- 462
           LG  V                         V   YG+TET   I+      + D L    
Sbjct: 304 LGFEV-----------------------THV---YGLTETYGPITVCEWKPEWDALPAEE 337

Query: 463 ----------GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGY 507
                      +VG      E+ +VD PE       +  PR     GEI +RG  V +GY
Sbjct: 338 RARLKARQGVRYVG----LEEVDVVD-PETM-----KDVPRDGKTIGEIVMRGNTVMKGY 387

Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
           YKN   T E   G GW H+GD+ +  P G ++I DR K+I  ++ GE ++  ++E V  K
Sbjct: 388 YKNPEATEEAFAG-GWFHSGDLAVVHPDGYIEIKDRSKDII-ISGGENISSIEVEGVLYK 445

Query: 568 CKFVLQCFIYGDSFNSCLVAIVAVDPD 594
              VL+             A+VA  PD
Sbjct: 446 HPAVLEA------------AVVAR-PD 459

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  130 bits (329), Expect = 5e-32
 Identities = 134/511 (26%), Positives = 212/511 (41%), Gaps = 113/511 (22%)

Query: 81  LHDNFIYAVENYPDYKYLGTRV-RVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           LHD   Y  E   ++     R   +DG  G  +  TY +V    + + +GL   G+++G 
Sbjct: 25  LHD---YCFERLSEFS---DRPCLIDGATG--RVYTYADVELLSRRVAAGLHKLGIRQGD 76

Query: 140 RIGLYLINRPEWLIVDHACS---AYSYISVPLYDTLGPDAVKYVVNHAEIE--AIFCIPQ 194
            + L L N PE+++     S   A +  + P Y              AEI   A     +
Sbjct: 77  VVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP------------AEIAKQAKASGAK 124

Query: 195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS---------YLQLQSQGCS 245
            + T   ++                + L  L    GV +++         +    +Q   
Sbjct: 125 LIITQSCYV----------------DKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADE 168

Query: 246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYM 301
           +  P     P+D+  + Y+SGTTG PKG +LTH  L+++VA    G +  + F+  D+ +
Sbjct: 169 NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL 228

Query: 302 SYLPLAHIYERANQIV--SVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
             LP+ HIY   N ++   +  G A+      +   L++ +   K TI P VP       
Sbjct: 229 CVLPMFHIYS-LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVP------- 280

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                       IV     S + ++   + IR         + S
Sbjct: 281 ---------------------------PIVLAIAKSPVVEKYDLSSIR--------MVLS 305

Query: 419 GASPLSPDVMDFLKVCFGCQVM-EGYGMTETSCIIS-----AIDKGDNLSGHVGSPNPAC 472
           GA+PL  ++ D  +      V+ +GYGMTE   +++     A +     SG  G+     
Sbjct: 306 GAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA 365

Query: 473 EIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
           E+K+VD PE   T    P  + GEIC+RGP + +GY  +   T   ID DGWLHTGDIG 
Sbjct: 366 ELKIVD-PE---TGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGY 421

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
                 L I+DR K + K  +G  VAP ++E
Sbjct: 422 IDDDDELFIVDRLKELIKY-KGFQVAPAELE 451

Length = 537

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  126 bits (320), Expect = 6e-32
 Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 35/238 (14%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPN 469
            +R +  GA+P+  ++   +   FG   ++GYGMTET    + +   D L   G VG P 
Sbjct: 116 SLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDI 529
           P  E+++VD  +     E  P   GEI VRGP V  GY+     T E +  DGWLHTGD+
Sbjct: 176 PGVEVRIVD-EDGR---ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDL 230

Query: 530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLV 586
           G     G L I+DRKK++     GE + P ++ENV      V    + G   + +   +V
Sbjct: 231 GYLDEDGYLYIVDRKKDMIISG-GENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVV 289

Query: 587 AIV------AVDPDVLKDWAASQ--GIK----FEDLEQLCNDPRARAAVLAEMNAVGK 632
           A+V       +D + L  +   +  G K     E +++L   PR         NA GK
Sbjct: 290 AVVVLRPGATLDAEELIAFCRERLAGYKVPKSVEFVDEL---PR---------NASGK 335

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 9e-32
 Identities = 123/520 (23%), Positives = 204/520 (39%), Gaps = 108/520 (20%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH--G 134
           +L  N   +   YPD     + G  +            +Y E+     E  +G L    G
Sbjct: 11  SLFHNLEVSARRYPDKTAIVFYGRAI------------SYREL-LEEAERLAGYLQQECG 57

Query: 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194
           ++KG R+ LY+ N P+++I  +A    + + VP+      + + + V  +         +
Sbjct: 58  VRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSE 117

Query: 195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ--SQGCSSP----- 247
               +   +  +   H+IV      ++   LP+   + + ++L+ +   Q  +       
Sbjct: 118 LAPKVAPAVGNLRLRHVIVA-----QYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAW 172

Query: 248 -----QPFCPPK----PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSD 298
                    PP     P+D+A + YTSGTTG PKG + TH  +++N  G  L     P  
Sbjct: 173 KEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES 232

Query: 299 IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
           + ++ LPL H       +  + + +    Y G  + LM              PR ++R  
Sbjct: 233 VVLAVLPLFH-------VTGMVHSMNAPIYAGATVVLM--------------PR-WDREA 270

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
           A              +L       + +       P+ + D L    + ER    +R++G 
Sbjct: 271 AA-------------RLI-----ERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGG 312

Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKL-- 476
           G + +   V + LK   G   +EGYG+TET   ++          H    NP    KL  
Sbjct: 313 GGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HS---NPPDRPKLQC 358

Query: 477 VDVPEMNY--------TSEDQPHPR-GEICVRGPIVFQGYYKNEVQTREV---IDGDGWL 524
           + +P            T E+ P    GEI V GP VF+GY+     T E    IDG  + 
Sbjct: 359 LGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFF 418

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            TGD+G     G   I DR K +   A G  V P ++EN+
Sbjct: 419 RTGDLGRMDEEGYFFITDRLKRMIN-ASGFKVWPAEVENL 457

Length = 546

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  128 bits (325), Expect = 1e-31
 Identities = 119/519 (22%), Positives = 189/519 (36%), Gaps = 92/519 (17%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TYGE+       G+ L   G+++  R+ L L++ PE+            + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS---LPSTSGV 231
           D  +Y +N +    +    +    L   + + P +  ++VVGG      S   L +T+  
Sbjct: 92  DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATAAE 151

Query: 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM 291
           +L +                    +D+A   Y+SG+TG PKG V  H +++     ++  
Sbjct: 152 ELEA---------------AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKN 196

Query: 292 V-QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD-------LAVL- 342
           V      D+  S   L   Y   N    +Y+ ++VG      + LM +        A + 
Sbjct: 197 VLGITEDDVVFSAAKLFFAYGLGN---GLYFPLSVG---ATTV-LMPERPTPDAVFATIE 249

Query: 343 --KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400
             KPT+F  VP LY  +                                          L
Sbjct: 250 RYKPTVFFGVPTLYAAM------------------------------------------L 267

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              +  ER    +R   S    L  ++    K  FG ++++G G TE   I  +   G  
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAV 327

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREV 517
             G  G P P  E+KLVD        + +    GEI    VRG     GY+    +TRE 
Sbjct: 328 KYGTSGKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRET 380

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             G  W  TGD       G      R  ++ K   G +V+P ++E+   +   VL+  + 
Sbjct: 381 FVG-EWTRTGDKYYRDEDGYYWYCGRSDDMLK-VSGIWVSPFEVEDALLQHPAVLEAAVV 438

Query: 578 GDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND 616
           G      L    A    VLKD          +L+    D
Sbjct: 439 GAEDEDGLTKPKAF--VVLKDGYQPSPELETELKDFVKD 475

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  127 bits (321), Expect = 5e-31
 Identities = 136/517 (26%), Positives = 215/517 (41%), Gaps = 89/517 (17%)

Query: 112 KWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA--CSAYSYISV-P 167
           K +TY E     ++  + LL    L+KG R+ L + N  ++ I       +  + ++V P
Sbjct: 49  KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNP 108

Query: 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS--- 224
           LY    P  +K+ +  +    +  I     T+   I++ P   +I    G     P    
Sbjct: 109 LYT---PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAAL 165

Query: 225 -----------LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG 273
                      +P       I + +  + G     P    +P+DIA + YT GTTG  KG
Sbjct: 166 VNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKG 225

Query: 274 AVLTHGNLISNVAGFSLMVQFYPS-----DIYMSYLPLAHIYE-RANQIVSVYYGVAVGF 327
           A+LTH NL++N+      +          ++ ++ LPL HI+   AN +V +  G     
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHL 285

Query: 328 YQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385
                D    + +L   + T F  V  L+N    G+ N                      
Sbjct: 286 ISNPRDMPGFVKELKKTRFTAFTGVNTLFN----GLLN---------------------- 319

Query: 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM 445
                 TP   +D++ F+ ++  LGG +    S        V +  K   G  ++E YG+
Sbjct: 320 ------TPG--FDQIDFSSLKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGL 363

Query: 446 TETS--CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI---CVRG 500
           TETS    I+ +   +  +G +G P P+ +  + D               GEI   C++G
Sbjct: 364 TETSPAACINPLTLKEY-NGSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKG 415

Query: 501 PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560
           P V +GY+K   +T +V+D DGWLHTGDI      G + I+DRKK++  L  G  V P +
Sbjct: 416 PQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNE 474

Query: 561 IENVYAKCKFVLQCFIYG----DSFNSCLVAIVAVDP 593
           IE+V A    VL+    G     S     V IV  DP
Sbjct: 475 IEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP 511

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  123 bits (312), Expect = 9e-31
 Identities = 84/308 (27%), Positives = 129/308 (41%), Gaps = 56/308 (18%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A   +T GTTG PK A  +H N ++N    +L+    P D+ ++ LPL H+     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHV---GG 57

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
            IV+    +A G            + +  P+ F + P +    +  I    + +      
Sbjct: 58  AIVTGLAPLARG----------ATVVLPTPSGFRN-PAVVANFW-KIVERYRVT------ 99

Query: 375 LFTA---AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
           L +A      +  Q  +     S +                 R+  +GA+PL  +V    
Sbjct: 100 LLSAVPTVLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRF 142

Query: 432 KVCFGCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKLVDV-PEMNYTSED 488
           +   G  V+EGYGMTE +  +SAI+   G    G VG   P   +++  +        + 
Sbjct: 143 EAVTGVPVVEGYGMTEGTG-VSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDC 201

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG-------LWLPGGRLK-- 539
            P   G + +RGP VF G Y N+         DGWL+TGD+G       LWL  GR K  
Sbjct: 202 APGEVGVLAIRGPNVFPG-YLNDAHNAGARLEDGWLNTGDLGRIDADGYLWL-TGRAKDL 259

Query: 540 IIDRKKNI 547
           II    NI
Sbjct: 260 IIRGGHNI 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  127 bits (320), Expect = 1e-30
 Identities = 119/503 (23%), Positives = 201/503 (39%), Gaps = 85/503 (16%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           +L D +       PD   +     VD    G  + TY  +  A   + + LL  G++ G 
Sbjct: 24  SLADYWQQTARAMPDKIAV-----VDNH--GASY-TYSALDHAASRLANWLLAKGIEPGD 75

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
           R+   L    E+ I+  AC     +SVPL  +     + +V+N  + +  F       T 
Sbjct: 76  RVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTR 135

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS-YLQLQSQGCSSPQPFCPP 253
               +L   +++P +  IV V   D+  P+  S S  ++I+ Y  L +            
Sbjct: 136 PVDLILPLQNQLPQLQQIVGV---DKLAPATSSLSLSQIIADYEPLTT--------AITT 184

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             +++A + +TSGT G PKG +LTH N++++   +   +     D++M   PL H     
Sbjct: 185 HGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH----- 239

Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                     A GF  G          V  P +  +   L +     I         L  
Sbjct: 240 ----------ATGFLHG----------VTAPFLIGARSVLLD-----IFTPDACLALL-- 272

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV---RFMGSGASPLSPDVMDF 430
                    ++   + G TP  ++D L  N + ++    +   RF   G + +   V   
Sbjct: 273 -------EQQRCTCMLGATPF-IYDLL--NLLEKQ-PADLSALRFFLCGGTTIPKKV--- 318

Query: 431 LKVCF--GCQVMEGYGMTETSCIISAIDKGDNLSGHV---GSPNPACEIKLVDVPEMNYT 485
            + C   G +++  YG TE S   + ++  D LS  +   G      EIK+VD       
Sbjct: 319 ARECQQRGIKLLSVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EAR 373

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P   GE   RGP VF GY      T   +D +GW ++GD+      G +KI  RKK
Sbjct: 374 KTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKK 433

Query: 546 NIFKLAQGEYVAPEKIENVYAKC 568
           +I  +  GE ++  ++E++  + 
Sbjct: 434 DII-VRGGENISSREVEDILLQH 455

Length = 547

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  123 bits (311), Expect = 7e-30
 Identities = 111/481 (23%), Positives = 189/481 (39%), Gaps = 92/481 (19%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
             G +W TY E+ A    + + L   G   G R+ +   N    + +  AC+    I VP
Sbjct: 18  ALGRRW-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP 76

Query: 168 LYDTLGPDAVKYVVNHAEIEAIF--CIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL 225
           L   L           +E++A+     P+                  +++G  D+ + + 
Sbjct: 77  LNWRLSA---------SELDALLQDAEPR------------------LLLG--DDAVAAG 107

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
             T    L +++   S     P       PE ++ I +TSGT+G PKG +L+  NL    
Sbjct: 108 -RTDVEDLAAFIA--SADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTA 164

Query: 286 AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY-YG----VAVGFYQGDNLKLMDDLA 340
             F ++ +      ++   P+ HI      +  V   G    V+ GF     L  + D A
Sbjct: 165 HNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPA 224

Query: 341 VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400
            L  T +  VP++     A             +  F AA      A+ +G          
Sbjct: 225 -LGITHYFCVPQMAQAFRA-------------QPGFDAAALRHLTALFTG---------- 260

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS-AIDKG- 458
                             GA   + D++ +L    G  +++G+GM+E   +   ++D   
Sbjct: 261 ------------------GAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDV 300

Query: 459 -DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV 517
               +G  G P P  + ++VD    +  ++      GE+ +RGP +  GY++    T   
Sbjct: 301 IRAKAGAAGIPTPTVQTRVVD----DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARA 356

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             GDGW  TGDI      G   ++DRKK++F ++ GE V P +IE V A    + +C + 
Sbjct: 357 FTGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVV 415

Query: 578 G 578
           G
Sbjct: 416 G 416

Length = 488

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  123 bits (310), Expect = 1e-29
 Identities = 121/491 (24%), Positives = 189/491 (38%), Gaps = 130/491 (26%)

Query: 107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV 166
           T  G ++ TYG++ AA   + + L+  G++ G R+ + +   PE L +  A      + +
Sbjct: 23  TPDGLRY-TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL 81

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           PL        + Y +  AE                     P++  +V        L  + 
Sbjct: 82  PLNTAYTLAELDYFIGDAE---------------------PAL--VVCDPANFAWLSKIA 118

Query: 227 STSGVKLI---------SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT 277
           + +G   +         S L+  +          P   +D+A I YTSGTTG  KGA+L+
Sbjct: 119 AAAGAPHVETLDADGTGSLLEAAA-AAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLS 177

Query: 278 HGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM- 336
           HGNL+SN        +F P D+ +  LP+ H +               G +   N+ L+ 
Sbjct: 178 HGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH---------------GLFVATNVALLA 222

Query: 337 ----------DDLAVLK----PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS 382
                     D  AVL      T+   VP  Y R+             L+E   T    +
Sbjct: 223 GASMIFLPKFDPDAVLALMPRATVMMGVPTFYTRL-------------LQEPRLTREAAA 269

Query: 383 KKQAIVSGQTPSKMWDRLV---FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
             +  +SG  P      L+     + +ER G  +                          
Sbjct: 270 HMRLFISGSAP------LLAETHREFQERTGHAI-------------------------- 297

Query: 440 MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEIC-- 497
           +E YGMTET+   S    G+  +G VG P P   +++ D PE          P GEI   
Sbjct: 298 LERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE-----TGAELPPGEIGMI 351

Query: 498 -VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV 556
            V+GP VF+GY++   +T E    DG+  TGD+G     G + I+ R K++  +  G Y 
Sbjct: 352 EVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDL--IISGGY- 408

Query: 557 APEKIENVYAK 567
                 NVY K
Sbjct: 409 ------NVYPK 413

Length = 504

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  119 bits (301), Expect = 1e-28
 Identities = 108/417 (25%), Positives = 162/417 (38%), Gaps = 115/417 (27%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH----IY 310
           P+DIA I ++SG+TG PKG +LTH NL++N+       +    D+++S++PL H    I 
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLI- 163

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY----NRIYAGITNAVK 366
                +     G+        N  LM         +F   P L+    ++  A I     
Sbjct: 164 --GFHLTPTALGI--------NQYLMP------TRLFIRRPLLWLDKASQHRATIL---- 203

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD----RLVFNKIRERLGGRVRFMGSGASP 422
           +S     K     + ++K            WD    RL+FN               GA P
Sbjct: 204 SSPNFGYKYLLKHFKTEKI---------IDWDLSSVRLIFN---------------GAEP 239

Query: 423 LSPDVM-DFLKVCFGCQVME-----GYGMTETSCIIS----------------------- 453
           +S D+  +FL+      +        YG+ E +  +S                       
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVK 299

Query: 454 --AIDKGDNLSG---HVGSPNPACEIKLVD-----VPEMNYTSEDQPHPRGEICVRGPIV 503
              ID  ++ +     VGSP   CEI++VD     +P+            G I ++G  V
Sbjct: 300 IIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTI---------GHIQIKGDNV 350

Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN-IFKLAQGEYVAPEKIE 562
             GYY N   T++ I  DGWL TGD+G  L  GRL I  R K+ I    Q  Y  P  IE
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGF-LRNGRLVITGRAKDIIIVNGQNYY--PHDIE 407

Query: 563 NVYAK---CKF--VLQCFIYGDSFNSCLVAIVAVDPDVLKDWA-ASQGIKFEDLEQL 613
            V  +    K   V  C +Y +   S  V I       L D+   +  IK    +++
Sbjct: 408 RVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKM 464

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  119 bits (301), Expect = 2e-28
 Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 5/157 (3%)

Query: 418 SGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLV 477
           SG   L     +  K   GC + EGYGMTETS ++S         G +G P P+   K++
Sbjct: 333 SGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVI 392

Query: 478 DVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
           D  + N     +    GE+CV+GP V +GY++    T E++D DGWL TGDI L    G 
Sbjct: 393 D-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGY 448

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
           ++I+DRKK++  L  G  V P ++E+V A    VLQC
Sbjct: 449 MRIVDRKKDMI-LVSGFNVYPNELEDVLAALPGVLQC 484

Length = 562

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  119 bits (300), Expect = 4e-28
 Identities = 137/639 (21%), Positives = 226/639 (35%), Gaps = 165/639 (25%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI-----VDHACSAYS- 162
           G ++ +TY E     + I   LL  GL            RP  +I     ++HA  A + 
Sbjct: 21  GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70

Query: 163 -YISVPL------YDTLGPD--AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIV 213
            Y  VP+      Y  L  D   ++++ +     A+F   +        ++ +    + V
Sbjct: 71  MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFA--EDGAAFARALAALGLAGVPV 128

Query: 214 VVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG 273
           V        P++   +       L       +    F    P+ +A   +TSG+TG PK 
Sbjct: 129 VAVRGAPGGPAIAFAA-------LLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKA 181

Query: 274 AVLTHGNLISNVAGFSLMVQFYPSD--IYMSYLPLAHIYERANQIV--SVYYG------- 322
            + TH  L +N A  +    F   +  + + +LP  H +   N      +Y G       
Sbjct: 182 VINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFG-GNHNFNMVLYNGGTLYIDD 240

Query: 323 ---VAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA 378
              V   F +   NL+       + PT++ +VP+ +  +     +A++    LR + F  
Sbjct: 241 GKPVPGLFEETLRNLRE------VSPTVYFNVPKGFEML----VDALERDAALRRRFF-- 288

Query: 379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL-----KV 433
                                            R+R +    + L  DV D L     + 
Sbjct: 289 --------------------------------KRLRLLFYAGAALPQDVWDRLQALAVRT 316

Query: 434 CFGCQV--MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
             G ++    G G TET+   + +    + SG +G P P  E+KLV              
Sbjct: 317 T-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV-------------- 361

Query: 492 PRG---EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD-----------IGLWLPGGR 537
           P G   E+ V+GP V  GY+++   T E  D +G+   GD            GL   G  
Sbjct: 362 PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVDPDDPERGLVFDG-- 419

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIEN-VYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD-- 594
                R    FKLA G +V+   +   + A    ++Q     D        +   D D  
Sbjct: 420 -----RVAEDFKLASGTWVSVGALRVALVAALAPLVQ-----D------AVVAGHDRDEI 463

Query: 595 ---VLKDWAASQ---GIKFEDLEQLCNDPRARAAV---LAEMNAVGKEGQLRGFEYAKAV 645
              V  + AA +   G+     E +   P  R A+   LA  N     G  R        
Sbjct: 464 GLLVFPNLAACRRLAGLAEASAEDVLAHPAVREALAARLAAHNR-AATGSTR----VTRA 518

Query: 646 TLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE 684
            L+ EP S++ G +T    I +     R A  +  +YA+
Sbjct: 519 LLLAEPPSIDAGEITDKGYINQRAVLARRAALVERLYAD 557

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  118 bits (298), Expect = 6e-28
 Identities = 106/334 (31%), Positives = 150/334 (44%), Gaps = 71/334 (21%)

Query: 251 CPPKP----EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF------YPS--D 298
             PKP    +D+A I Y+SGTTG  KG VLTH NLI+ V    L V+F      YP   +
Sbjct: 189 FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV---ELFVRFEASQYEYPGSDN 245

Query: 299 IYMSYLPLAHIYERANQIV---SVYYGVAV--GFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
           +Y++ LP+ HIY  +  +V   S+   + V   F   D +K++D   V   T FP VP  
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKV---THFPVVPP- 301

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
              I   +T   K               S KQ                            
Sbjct: 302 ---ILMALTKKAKGVCGE-------VLKSLKQ---------------------------- 323

Query: 414 RFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH--VGSPNP 470
             +  GA+PLS   + DF++       ++GYGMTE++ + +     + LS +  VG   P
Sbjct: 324 --VSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAP 381

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
             + K+VD    +      P   GE+ ++GP V +GY  N   T+  ID DGWL TGDI 
Sbjct: 382 NMQAKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIA 438

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            +   G L I+DR K I K  +G  +AP  +E V
Sbjct: 439 YFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471

Length = 560

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  118 bits (297), Expect = 6e-28
 Identities = 141/533 (26%), Positives = 212/533 (39%), Gaps = 114/533 (21%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
           ++RS R P   V      P+  TL D  +   E Y D         V+   G  K +TYG
Sbjct: 14  IFRS-RYPSVPV------PDKLTLPDFVLQDAELYADKVAF-----VEAVTG--KAVTYG 59

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           EV    +     L   GL+KG  + + L N  E+ IV     A   +      T     +
Sbjct: 60  EVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEI 119

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD--------EHLPSLPSTS 229
           K     A  + I  +    N       ++  + L V+V G++        + L      +
Sbjct: 120 KKQAEAAGAKLI--VTNDTN-----YGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRA 172

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG-- 287
           G    +   LQ+  C+ P               ++SGTTG  KG +LTH NL++N+    
Sbjct: 173 GDTSDNEEILQTDLCALP---------------FSSGTTGISKGVMLTHRNLVANLCSSL 217

Query: 288 FSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG--------VAVGFYQGDNLKLMDDL 339
           FS+  +     + +  +P  HIY     I  +           V +  +  +    ++ L
Sbjct: 218 FSVGPEMIGQVVTLGLIPFFHIY----GITGICCATLRNKGKVVVMSRF--ELRTFLNAL 271

Query: 340 AVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
              + +  P VP +   I   + N +     L  KL       K QAI++   P      
Sbjct: 272 ITQEVSFAPIVPPI---ILNLVKNPIVEEFDL-SKL-------KLQAIMTAAAP------ 314

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG 458
                                  L+P+++   +  F G QV E YG+TE SCI   +  G
Sbjct: 315 -----------------------LAPELLTAFEAKFPGVQVQEAYGLTEHSCI--TLTHG 349

Query: 459 DNLSGH-------VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNE 511
           D   GH       VG   P  E+K +D        ++ P   GE+CVR   V QGYY N+
Sbjct: 350 DPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNK 406

Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            +T   ID DGWLHTGDIG     G + I+DR K + K  +G  VAP ++E +
Sbjct: 407 EETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 458

Length = 546

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (296), Expect = 1e-27
 Identities = 122/480 (25%), Positives = 194/480 (40%), Gaps = 89/480 (18%)

Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           G+    R+G  + N  E L V  A +    +  PL   L  D + +++NHAE E I   P
Sbjct: 60  GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119

Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           +    L   + E P V  +V +G  D    +     G+K+ SY  L   G S+   + P 
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDW-PE 177

Query: 254 KPEDI-ATICYTSGTTGTPKGAVLTHGNL----ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
             E   A ICY++GTTG PKG V +H +L    +S     SL V    S  ++  +P+ H
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGES--FLCCVPIYH 235

Query: 309 IYERANQIVSVYYGVAV-GFYQGDNLKLMDDLAVLKPTIFP----SVPRLYNRIYAGITN 363
           +         + +GV +  F  G             P +FP    S P L   I   +  
Sbjct: 236 V---------LSWGVPLAAFMSG------------TPLVFPGPDLSAPTLAKIIATAMPR 274

Query: 364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
                 TL  +L    +  K         P +M  + ++                G S +
Sbjct: 275 VAHGVPTLWIQLMV--HYLKN-------PPERMSLQEIY---------------VGGSAV 310

Query: 424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV--------GSPNPACEIK 475
            P ++   +  +G  V+  +GMTETS + +       +SG          G    + E +
Sbjct: 311 PPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYR 370

Query: 476 LVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----------REVIDG---- 520
           +V+  + M  T  ++    GEI VRG  V   YY +  +            +V D     
Sbjct: 371 IVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRF 426

Query: 521 --DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             DGWL TGD+G     G L I DR +++ + + GE++   ++EN       V++C + G
Sbjct: 427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  114 bits (289), Expect = 2e-27
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 24/180 (13%)

Query: 439 VMEGYGMTETSCIISAIDKGDNL--SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI 496
           +   YGMTET+  ++ +   D L   G VG P P  E+++V+  +            GEI
Sbjct: 216 LYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQD------------GEI 263

Query: 497 CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV 556
            VRGP +F GY      T  + D DGW HTGD+G     G L ++ R+ ++  ++ GE +
Sbjct: 264 LVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI-ISGGENI 321

Query: 557 APEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV-----AVDPDVLKDWAASQGIKFE 608
            PE+IE V  +   V +  + G   D +    VA V      V  + L+ + A +  K++
Sbjct: 322 YPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSVEELQAFLADKLAKYK 381

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  116 bits (293), Expect = 3e-27
 Identities = 132/562 (23%), Positives = 221/562 (39%), Gaps = 116/562 (20%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T++D+    V + PD K   T VR+    G  +  TY E++A    +  GL   G+ +G 
Sbjct: 25  TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---- 195
            +   L N  E+ ++  ACS    +  PL        + +++ HAE   +  +P+T    
Sbjct: 82  VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140

Query: 196 -----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF 250
                   L     E+P++  +VVVGG           S   L+     + Q   +P   
Sbjct: 141 DHAAMARRLR---PELPALRHVVVVGGDGA-------DSFEALLITPAWE-QEPDAPAIL 189

Query: 251 CP--PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               P P+D+  + YTSGTTG PKG + T   L++N+  ++  +     D+ +   P+AH
Sbjct: 190 ARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAH 249

Query: 309 IYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS 368
                            GF  G  + +M     L  T           +   I +  +A+
Sbjct: 250 Q---------------TGFMYGLMMPVM-----LGATA----------VLQDIWDPARAA 279

Query: 369 GTLREK--LFTAAYNSKKQAIVSGQTP--SKMWDRLVFNKIRERLGGRVRFMGSGASPLS 424
             +R +   FT A            TP  + +       +    +     F+ +GA P+ 
Sbjct: 280 ELIRTEGVTFTMA-----------STPFLTDLTR--AVKESGRPVSSLRTFLCAGA-PIP 325

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSC--IISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
             +++  +   G +++  +GMTE     +    D  +  S   G P P  E+++VD    
Sbjct: 326 GALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD---- 381

Query: 483 NYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
              ++  P P G+I    VRG   F GY K         D DGW  TGD+      G ++
Sbjct: 382 ---ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADGYIR 436

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD----- 594
           I  R K++  +  GE +   +IE +  +   + Q            VAIVA  PD     
Sbjct: 437 ISGRSKDVI-IRGGENIPVVEIEALLYRHPAIAQ------------VAIVAY-PDERLGE 482

Query: 595 ------VLKDWAASQGIKFEDL 610
                 V +     Q + FE++
Sbjct: 483 RACAFVVPR---PGQSLDFEEM 501

Length = 547

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  115 bits (290), Expect = 3e-27
 Identities = 91/328 (27%), Positives = 128/328 (39%), Gaps = 76/328 (23%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312
           P P+  A I YTSGTTG PKG VL+   + +++   +   Q+   D+ +  LPL H++  
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVH-- 182

Query: 313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY-------AGITNAV 365
                    G+ +G              VL P       R+ NR              A+
Sbjct: 183 ---------GLVLG--------------VLGPL------RIGNRFVHTGRPTPEAYAQAL 213

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
              GTL    F                P+ +W R+  +    R     R + SG++ L  
Sbjct: 214 SEGGTL---YFG--------------VPT-VWSRIAADPEAARALRGARLLVSGSAALPV 255

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
            V D L    G + +E YGMTET   +S    G+   G VG P    E +LVD       
Sbjct: 256 PVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDE-----D 310

Query: 486 SEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
               PH     GE+ VRGP +F GY      T      DGW  TGD+ +  P G  +I+ 
Sbjct: 311 GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVG 370

Query: 543 R------KKNIFKLAQGEYVAPEKIENV 564
           R      K   +++  GE      IE  
Sbjct: 371 RESTDLIKSGGYRIGAGE------IETA 392

Length = 471

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score =  114 bits (287), Expect = 2e-26
 Identities = 147/661 (22%), Positives = 240/661 (36%), Gaps = 172/661 (26%)

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RS   L     D+P    L D  ++  +  PD  +L  R    G  GG++ +TY E    
Sbjct: 29  RSAEPL----GDYPR--RLTDRLVHWAQEAPDRVFLAER----GADGGWRRLTYAEALER 78

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLI-----VDHA----------------CSAY 161
            + I   LL  GL            RP  +I     ++HA                  AY
Sbjct: 79  VRAIAQALLDRGLSAE---------RP-LMILSGNSIEHALLALAAMYAGVPYAPVSPAY 128

Query: 162 SYISVPL------YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVV 215
           S +S          + L P  V +  + A                  ++ +    + VV 
Sbjct: 129 SLVSQDFGKLRHVLELLTPGLV-FADDGAAFARA-------------LAAVVPADVEVVA 174

Query: 216 GGKDEHLPSLPSTSGVKLISYLQLQSQGCSS--PQPFCPPKPEDIATICYTSGTTGTPKG 273
                      +  G     +  L +   ++          P+ IA   +TSG+TG PK 
Sbjct: 175 VR--------GAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKA 226

Query: 274 AVLTHGNLISNVAGFSLMVQFYPSD-----IYMSYLPLAHIYERANQIV--SVYYG---- 322
            + TH  L +N     ++ Q +P       + + +LP  H +   N  +   +Y G    
Sbjct: 227 VINTHRMLCANQQ---MLAQTFPFLAEEPPVLVDWLPWNHTFG-GNHNLGIVLYNGGTLY 282

Query: 323 ------VAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
                    GF +   NL+ +       PT++ +VP+ +      +  A++    LR + 
Sbjct: 283 IDDGKPTPGGFDETLRNLREI------SPTVYFNVPKGW----EMLVPALERDAALRRRF 332

Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL---- 431
           F                                   R++ +    + LS DV D L    
Sbjct: 333 F----------------------------------SRLKLLFYAGAALSQDVWDRLDRVA 358

Query: 432 -KVCFGCQV--MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSED 488
              C G ++  M G GMTET+   +      + +G++G P P CE+KLV V         
Sbjct: 359 EATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV-------GG 410

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL----PGGRLKIIDRK 544
               + E+ V+GP V  GY++    T E  D +G+  +GD   ++    P   L    R 
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRI 466

Query: 545 KNIFKLAQGEYVA--PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
              FKL+ G +V+  P +   V A    V    I G   +  +  +V  + D  +  A  
Sbjct: 467 AEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD-EIGLLVFPNLDACRRLAG- 524

Query: 603 QGIKFEDLEQLCNDPRARAAV---LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL 659
             +    L ++   P  RAA    LA +NA       R    A+A+ L+ EP S++ G +
Sbjct: 525 -LLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTR---VARAL-LLDEPPSLDAGEI 579

Query: 660 T 660
           T
Sbjct: 580 T 580

Length = 614

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  109 bits (274), Expect = 6e-26
 Identities = 82/378 (21%), Positives = 131/378 (34%), Gaps = 87/378 (23%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D+A I YTSG+TG PKG +L+H NL +     +  ++    D  ++ LP +  Y   +
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LS 59

Query: 315 QIVSVYYGVAVGFYQGDNLKLM----------DDLAVLKPTIFPSVPRLYNRIYAGITNA 364
           Q+++        F  G  L L             LA  + T F  VP  +          
Sbjct: 60  QLLTA-------FRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 365 VKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLS 424
                    +L                              RE     +R++ +    L 
Sbjct: 103 --------AQLLRLD-----------------------PLAREDFP-SLRYLTNAGGALP 130

Query: 425 PDVMDFLKVCF-GCQVMEGYGMTE-TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
              +  L+  F   ++   YG+TE         ++ D     +G   P  E+ +VD    
Sbjct: 131 AKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD---- 186

Query: 483 NYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVID-----GDGWLHTGDIGLWLP 534
               +         GE+  RG  V +GY+ +   T E +      G+  L+TGD+     
Sbjct: 187 ---EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDE 243

Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAV--- 591
            G L  + RK ++ K   G  V+P +IE V      V +  + G        AIVAV   
Sbjct: 244 EGYLYFVGRKDDMIKTR-GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVS 302

Query: 592 ------DPDVLKDWAASQ 603
                 D   L       
Sbjct: 303 ADGESLDEKELLKHCRKH 320

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score =  112 bits (282), Expect = 2e-25
 Identities = 92/321 (28%), Positives = 137/321 (42%), Gaps = 62/321 (19%)

Query: 249  PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
             FC   P+D A I +TSG+ GTPKG VL+H NL++N A  +  + F P D   + LP+ H
Sbjct: 786  YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Query: 309  IYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS------VPRLYNRIYAGIT 362
                        +G+  G        ++  L+ +K  ++PS      +P L   IY   T
Sbjct: 846  -----------SFGLTGGL-------VLPLLSGVKVFLYPSPLHYRIIPEL---IYD--T 882

Query: 363  NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
            NA    GT     F   Y             ++      F          +R++ +GA  
Sbjct: 883  NATILFGT---DTFLNGY-------------ARYAHPYDFR--------SLRYVFAGAEK 918

Query: 423  LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
            +  +        FG +++EGYG+TET+ +I+      N +G VG   P  E +L  VP +
Sbjct: 919  VKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGI 978

Query: 483  NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
            +          G + VRGP V  GY + E         DGW  TGDI      G + I  
Sbjct: 979  D--------EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKG 1030

Query: 543  RKKNIFKLAQGEYVAPEKIEN 563
            R K   K+A GE ++   +E 
Sbjct: 1031 RAKRFAKIA-GEMISLAAVEE 1050

Length = 1140

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  110 bits (276), Expect = 3e-25
 Identities = 124/470 (26%), Positives = 206/470 (43%), Gaps = 77/470 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS-----VPL 168
           +TY E+ A  +   + LL  G  K   + LYL N P     DH  + +  +      V L
Sbjct: 47  ITYTELEAMAETAAAALLRAGYGKDASVALYLGNTP-----DHPINFFGALKAGARVVHL 101

Query: 169 YDTLGPDAVKYVVNH--AEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL---- 222
               G  A+ + ++   A +     +   L   L F+ +     LIV    +D++     
Sbjct: 102 SPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVC---EDDNWGKVG 158

Query: 223 -PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            P  P  +  ++++Y     +G ++P  +    P+D+A + YT GTTG PKGA+LTHGNL
Sbjct: 159 TPQAPIPADPRIVTYADF-VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNL 217

Query: 282 ISNVAGFSL---MVQFYPSDIY--MSYLPLAHIYERANQIV-SVYYGVAVGFYQG-DNLK 334
            S V+ + +     +    D+   +  LPL HIY     ++ S+  G  +  +Q  D   
Sbjct: 218 TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAA 277

Query: 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS 394
           +  D+   + T+FP VP ++                                I     PS
Sbjct: 278 VFRDIEEKRATVFPGVPTMW--------------------------------IALANDPS 305

Query: 395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET-SCIIS 453
                     + +R    +  +GSG +PL  +V +F +   G ++  G+GMTET S    
Sbjct: 306 ----------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTG 355

Query: 454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYYKNEV 512
              +G +  G +G   P  E+   DV  ++  ++  P    GE+ +RGP V +GY+    
Sbjct: 356 HPPEGPDKPGSIGLMLPGIEL---DVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPE 412

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           ++ E   GD +L TGDIG     G   ++DRKK++  ++ G  V P+ IE
Sbjct: 413 ESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMI-ISGGFNVYPQMIE 460

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  109 bits (274), Expect = 6e-25
 Identities = 123/524 (23%), Positives = 190/524 (36%), Gaps = 128/524 (24%)

Query: 203 ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL---QLQSQGCSSPQPFCPPKPEDIA 259
              +PS+   V +        S  S+  + L S+L    L+ +   + +      P+D  
Sbjct: 123 NDRLPSLMWQVFLE-------SPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAV 175

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            IC+TSGTTG PKG  ++H  LI        +V +   D+Y+   PL HI      + S 
Sbjct: 176 LICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI----GGLSSA 231

Query: 320 YYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
              + VG        F     L+ +    V   T   +VP                   +
Sbjct: 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNV---TSMITVP-----------------AMM 271

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
            +             ++S    S  W   VF  +R+ L G           LS  ++   
Sbjct: 272 AD-------------LISLTRKSMTWK--VFPSVRKILNG--------GGSLSSRLLPDA 308

Query: 432 KVCFGC-QVMEGYGMTET-----------------SCIISAIDKGDNLSGH------VGS 467
           K  F   ++   YGMTE                     +  +++  + S H      VG 
Sbjct: 309 KKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGK 368

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P  E+K+           D+    G I  RGP V  GY+    +T  V+  DGWL TG
Sbjct: 369 PAPHVELKI---------GLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG 419

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG--DS-FNSC 584
           DIG     G L +I R  +  K   GE V PE++E V ++   V    + G  DS     
Sbjct: 420 DIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEM 478

Query: 585 LVAIVAVDPDVLKD---WAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEY 641
           +VA V      L+D   W+ ++    +    L ++          +    +E  L  F+ 
Sbjct: 479 VVACVR-----LRDGWIWSDNEKENAKKNLTLSSE---------TLRHHCREKNLSRFKI 524

Query: 642 AKAVTLMPEPFSVENGLLTPTFKIKRPQAK----ERFAKAISNM 681
            K      +PF      LT T KI+R + +           SN+
Sbjct: 525 PKLFVQWRKPFP-----LTTTGKIRRDEVRREVLSHLQSLPSNL 563

Length = 563

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  108 bits (270), Expect = 2e-24
 Identities = 118/516 (22%), Positives = 198/516 (38%), Gaps = 83/516 (16%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T++D+F  AV N PD   L T  R     G  +  +Y E+      I  GL   G+ +G 
Sbjct: 23  TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN-- 197
            +   L NR E+  +  AC+    +  PL        + +++NHA+   +F +P      
Sbjct: 80  VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHAD-SKVFVVPSVFRGF 138

Query: 198 ----TLLSFISEIPSVHLIVVVGGK-----DEHLPSLPSTSGVKLISYLQLQSQGCSSPQ 248
                     S++P++  +VV+ G      D  L +          + L           
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPR------- 191

Query: 249 PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               P P+D+  + YTSGTTG PKG + T   L SN+  ++  ++    D+ +   P+AH
Sbjct: 192 ----PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247

Query: 309 IYERANQIVSVYYGVAVGFYQGDNLKLM-DDLAVLKPTIFPSVPRLYNRIYAGITNAVKA 367
                            GF  G  + L+ +  AVL+                 I N  +A
Sbjct: 248 Q---------------TGFMYGLMMPLILNATAVLQD----------------IWNPARA 276

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDV 427
           +  +RE   T    S     ++              +    +     F+ +GA P+   +
Sbjct: 277 AELIRETGVTFTMAST--PFLTDLCR-------AVKESGAPVPSLFTFLCAGA-PIPGIL 326

Query: 428 MDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHV-GSPNPACEIKLVDVPEMNYT 485
           ++      G  ++  +GMTE   + ++  D     +    G P P  E+K++D       
Sbjct: 327 VERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID------- 379

Query: 486 SEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           +      +GE     VRG   F GY K         D +GW  TGD+      G ++I  
Sbjct: 380 ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDLAFQDAEGYIRING 437

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           R K++  +  GE +   +IEN+  +   V Q  I  
Sbjct: 438 RSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  105 bits (265), Expect = 3e-24
 Identities = 79/319 (24%), Positives = 119/319 (37%), Gaps = 62/319 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLI---SNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311
            +DIA   YTSGTTG PKG +  H + +      A   L +Q  P D   S   L   Y 
Sbjct: 90  ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQ--PGDRIFSSSKLFFAYG 147

Query: 312 RANQIVSVYYGVAVG----FYQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
             N   S+ + +  G       G      ++D LA  +PT+   VP LY  +        
Sbjct: 148 LGN---SLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL-------- 196

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                + SG   +              L   VR   S    L  
Sbjct: 197 ---------------------LESGAGSA-------------PLFRSVRLCVSAGEALPA 222

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
            + +      G ++++G G TE   I  +   G    G  G P P  E +LVD       
Sbjct: 223 GLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVD-ESGREV 281

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
                   G++ VRGP +  GY+    +T+  +  DGWL TGD       G  +   R  
Sbjct: 282 PAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRYQGRAD 337

Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++ K++ G++V+P ++E  
Sbjct: 338 DMIKVS-GQWVSPLEVEAA 355

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  105 bits (264), Expect = 6e-24
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 35/239 (14%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-N 469
            +R +  G +PLSP++   ++   GC + + +GM E     + +D   ++     G P +
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPIS 315

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
           PA EI++VD        + +P P GE+     RGP   +GYY+           DG+  T
Sbjct: 316 PADEIRIVDD-------QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL--QCFIYGDSF--- 581
           GD+      G  +++ R K+      GE ++PE+IEN+      V         D     
Sbjct: 369 GDLVRIDADGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGE 427

Query: 582 NSCLVAI----VAVDPDVLKDWAASQGI-KF---EDLEQLCNDPRARAAVLAEMNAVGK 632
             C   +     A     L+ +   QG+ KF   + LE + + P            VGK
Sbjct: 428 RICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEVVDSLPL---------TPVGK 477

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  105 bits (263), Expect = 1e-23
 Identities = 95/324 (29%), Positives = 151/324 (46%), Gaps = 63/324 (19%)

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFY-----PSDIYMSYL 304
           C P+  D+A + YT GTTG PKG +LTH NL+SN    +LM VQ+        ++ +  L
Sbjct: 202 CDPE-NDLALLQYTGGTTGFPKGVMLTHKNLVSN----TLMGVQWLYNCKEGEEVVLGVL 256

Query: 305 PLAHIY-ERANQIVSVYYGVAVGFYQGDNLKLM-DDLAVLKPTIFPSVPRLYNRIYAGIT 362
           P  H+Y   A   +S+  G  +      ++K++ + +   K T+FP  P +Y        
Sbjct: 257 PFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYI------- 309

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
            A+  S  L+E   ++                                  +R   SG++P
Sbjct: 310 -ALLNSPLLKEYDISS----------------------------------IRACISGSAP 334

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCII-SAIDKGDNLSGHVGSPNPACEIKLVDVPE 481
           L  +V +  +   G +++EGYG+TE+S +  S       + G +G P P  E  ++ +  
Sbjct: 335 LPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE- 393

Query: 482 MNYTSED-QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              T E   P   GEI V+GP + +GY+    +T  V+  DGWLHTGD+G     G   +
Sbjct: 394 ---TGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYV 449

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
            DRKK++  +A G  V P ++E V
Sbjct: 450 KDRKKDMI-VASGFNVYPREVEEV 472

Length = 563

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  103 bits (258), Expect = 2e-23
 Identities = 84/339 (24%), Positives = 134/339 (39%), Gaps = 69/339 (20%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS--DIYMSYLPLAHIYER 312
            +D A + YTSGTTG PKGA+  H  L+ ++ G  L  +  P   D++ +    A I   
Sbjct: 87  SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146

Query: 313 ANQIV-SVYYGVAV------GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
            + ++ ++Y+GV V       F       LM    V    + P+  ++  R+ +      
Sbjct: 147 LDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGS------ 200

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                          +D             R+R + SG   L  
Sbjct: 201 ---------------------------ERARYDL------------RLRAVASGGESLGE 221

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIIS-AIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           +++++ +   G  V E YG TE + ++      G    G +G P P  E+ +VD      
Sbjct: 222 ELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD------ 275

Query: 485 TSEDQPHP---RGEICVR--GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
               +P P    GEI V+   P++F GY+ N   T     GD WL TGD+G     G L 
Sbjct: 276 -DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDADGYLW 333

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
              R  ++ K + G  + P +IE    K   VL+  + G
Sbjct: 334 FKGRADDVIKSS-GYRIGPAEIEECLLKHPAVLEAAVVG 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  103 bits (259), Expect = 2e-23
 Identities = 83/366 (22%), Positives = 124/366 (33%), Gaps = 85/366 (23%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A I +TSG+TG PKG  ++H NL S +            D++ +  P        +
Sbjct: 96  PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPF-------S 148

Query: 315 QIVSV---YYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITN 363
             +SV   +  +A G            D L L + L     T++ SVP            
Sbjct: 149 FDLSVFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSF---------- 198

Query: 364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
              AS  L  +                  PS    R               F G     L
Sbjct: 199 ---ASLLLLSRELN-----------PESLPSL---RTFL------------FCGE---VL 226

Query: 424 SPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDNLSGHVGSPNPACEIKLV 477
              +   L+  F   +++  YG TE +  ++A +        N    +G P P     ++
Sbjct: 227 PKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALIL 286

Query: 478 DVPEMNYTSEDQ----PHPRGEICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIG 530
           D        ED     P   GE+ + GP V  GY  N  +T +     +G  W  TGD+ 
Sbjct: 287 D--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLV 338

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI---YGDSFNSCLVA 587
                G L  + RK    KL  G  +  E+IE        V +  +           LVA
Sbjct: 339 YLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVA 397

Query: 588 IVAVDP 593
            V    
Sbjct: 398 FVVGKE 403

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  104 bits (262), Expect = 3e-23
 Identities = 103/456 (22%), Positives = 167/456 (36%), Gaps = 90/456 (19%)

Query: 131 LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           L H  G+  G  +   L N PE         A   I+ P+   L P+ +  ++  A  + 
Sbjct: 74  LLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKV 132

Query: 189 IFCI---PQT--LNTLLSFISEIPSVHLIVVVGG-------KDEHLPSLPSTSGVKLISY 236
           +  +   P T     +   ++ +P +  +V V         K   +P +   +  +++ +
Sbjct: 133 LVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192

Query: 237 LQLQSQGCSSPQPFC--PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
               +      + F   P  P+D+A   +T GTTG PK A  THGN ++N    +L++  
Sbjct: 193 DAELA-RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL 251

Query: 295 YPSDIYMSYLPLAHIYERANQIV-------SVYYGVAVGFYQGDNLKLMDDL----AVLK 343
            P D     LPL H+       +        V      G Y+G    ++ +        +
Sbjct: 252 GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQG-YRGPG--VIANFWKIVERYR 308

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
                 VP +Y  +     +    S             S + A+  G  P  +    VF 
Sbjct: 309 INFLSGVPTVYAALLQVPVDGHDIS-------------SLRYAL-CGAAPLPV---EVFR 351

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNL 461
           +     G R+                           EGYG+TE +C+ S    D G+  
Sbjct: 352 RFEAATGVRIV--------------------------EGYGLTEATCVSSVNPPD-GERR 384

Query: 462 SGHVGSPNPACEIKLVDV-PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            G VG   P   +++V +     Y  +      G +C+ GP VF GY       + +   
Sbjct: 385 IGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLE 443

Query: 521 DGWLHTGDIG-------LWLPGGRLK--IIDRKKNI 547
           DGWL+TGD+G        WL  GR K  II    NI
Sbjct: 444 DGWLNTGDLGRIDADGYFWLT-GRAKDLIIRGGHNI 478

Length = 632

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  100 bits (252), Expect = 1e-22
 Identities = 88/352 (25%), Positives = 130/352 (36%), Gaps = 89/352 (25%)

Query: 258 IATIC---YTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           I       YTSGTTG PK A+++H   +   A F  +    P D+    LPL H    +N
Sbjct: 80  IVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYH----SN 135

Query: 315 QIVSVYYGVAVGFYQGDNLKL---------MDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
              ++  G +     G +L L           D+     T F  V  L            
Sbjct: 136 ---ALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL------------ 180

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                 R  L                 P K  DR   + +R+ +G  +R          P
Sbjct: 181 -----CRYLL---------------NQPEKPDDRD--HPLRKIIGNGLR----------P 208

Query: 426 DVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV----- 479
           D+ D  K  FG  +++E YG TE    +  I+   N  G VG   P   I +V       
Sbjct: 209 DIWDEFKERFGVPRIVEFYGSTE--GNVGFINL-FNKPGAVG-RLPPAAIAVVKYDVETE 264

Query: 480 -PEMNYTSEDQPHPRGE-------ICVRGPIVFQGYYKNEVQTREVI-----DGDGWLHT 526
            P  +        P GE       I  R P  F GY  +E   ++++      GD + +T
Sbjct: 265 EPIRDANGFCIKVPPGEVGLLLGEITDRNP--FDGYTDDEATEKKILRDVFKKGDAYFNT 322

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           GD+      G    +DR  + F+  +GE V+  ++E V AK   V +  +YG
Sbjct: 323 GDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  101 bits (253), Expect = 2e-22
 Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 11/134 (8%)

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGHVGS---PNPACEIKLVDVPEMNYTSEDQPHP 492
           G  ++EGYG+TE S ++S      +L  + GS   P P+ EIKLVD  + N     +P  
Sbjct: 350 GQYLLEGYGLTECSPLVSVNPY--DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEP-- 404

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 552
            GE+ V+GP V  GY++    T EVI  DGWL TGDI +    G L+I+DRKK++  L  
Sbjct: 405 -GELWVKGPQVMLGYWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMI-LVS 461

Query: 553 GEYVAPEKIENVYA 566
           G  V P +IE+V  
Sbjct: 462 GFNVYPNEIEDVVM 475

Length = 560

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 88/393 (22%), Positives = 145/393 (36%), Gaps = 67/393 (17%)

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
           L+FI E     L++        L  L     +     L       + P P  P  P+D+A
Sbjct: 64  LAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLA 123

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            + YTSG+TG PKG V+TH +L++ +A  +      P D  + +  L+            
Sbjct: 124 YVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSF----------- 172

Query: 320 YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL-FTA 378
                             D +V    IF +       + AG T  V      R+     A
Sbjct: 173 ------------------DASVE--EIFGA-------LLAGATLVVPPEDEERDDAALLA 205

Query: 379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLKVCFGC 437
           A  ++    V   TPS +   L            +R +  G   L+P ++D +     G 
Sbjct: 206 ALIAEHPVTVLNLTPS-LLALLA--AALPPALASLRLVILGGEALTPALVDRWRARGPGA 262

Query: 438 QVMEGYGMTETSC-----IISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
           +++  YG TET+      ++   D        +G P     + ++D        + +P P
Sbjct: 263 RLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVP 315

Query: 493 R---GEICVRGPIVFQGYYKNEVQTREVI--------DGDGWLHTGDIGLWLPGGRLKII 541
               GE+ + GP V +GY      T E          DG     TGD+  +LP G L+ +
Sbjct: 316 VGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL 375

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
            R  +  K+ +G  +   +IE    +   V + 
Sbjct: 376 GRIDDQVKI-RGYRIELGEIEAALLRHPGVREA 407

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 99.5 bits (248), Expect = 9e-22
 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 8/145 (5%)

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
           GC ++EGYG+TETS + S    G  L+  G VG P P   +K++D    +  +E     R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           GE+C++GP V +GY++    T E +D +GW  TGDI +  P G ++I+DRKK++  +  G
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI-IVSG 471

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG 578
             V P +IE+V      V  C   G
Sbjct: 472 FNVYPNEIEDVVMAHPKVANCAAIG 496

Length = 562

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 114/482 (23%), Positives = 185/482 (38%), Gaps = 77/482 (15%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y +++    ++   L   GL  G R+ L + +  E+++   A S    + VPL D   
Sbjct: 44  ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
           P A +  V      A   +                  L V VGG         S   V L
Sbjct: 103 PIA-EQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLS---VHL 158

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            +  +      S+P+   P    D A I +T GTTG PK    TH N+ S+V       +
Sbjct: 159 DAATEPTPA-TSTPEGLRP----DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR 213

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYG------VAVGFYQGDNLKLMDDLAVLKPTIF 347
             P D  ++ +PL H +     +++           A G +        DD+  +  T +
Sbjct: 214 LSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTF--WDDIKAVGATWY 271

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +VP ++ +I             L E+  T     K  A+                    
Sbjct: 272 TAVPTIH-QI-------------LLERAATEPSGRKPAAL-------------------- 297

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISAIDKGDNLS 462
                 RF+ S ++PL+ +    L+  F   V+  +GMTE     T+  I  I + +N  
Sbjct: 298 ------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPV 351

Query: 463 GHVG--SPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREV 517
              G    +   +I++V        S+  P P    GE+ +RG  V +GY  +   T   
Sbjct: 352 VSTGLVGRSTGAQIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN 404

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
              DGWL TGD+G     G L I  R K +     GE ++PE++E V A    V++  ++
Sbjct: 405 FT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVF 462

Query: 578 GD 579
           G 
Sbjct: 463 GV 464

Length = 534

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 97.7 bits (243), Expect = 4e-21
 Identities = 95/507 (18%), Positives = 158/507 (31%), Gaps = 99/507 (19%)

Query: 70  DRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
                 P   T+H  F       PD   L         V G + +TY E+ A    +   
Sbjct: 218 ALAAPIPLRLTIHLLFEEQAATTPDAVAL---------VRGGQQLTYAELDARANRLARL 268

Query: 130 LLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
           L+  G+  G  + +      E ++    V  A +AY    VPL      + + Y++  + 
Sbjct: 269 LISLGVGPGETVAILADRSLELVVALLAVLKAGAAY----VPLDPLYPAERLAYILEDSR 324

Query: 186 IEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS 245
              +         L      +P + L   +    +  P   +                  
Sbjct: 325 PTLLLTQAH----LRVDDVGLPGLALDDALSEIPDTDPIPQAL----------------- 363

Query: 246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP 305
                     + +A I YTSG+TG PKG  + H  L + +            D  ++   
Sbjct: 364 --------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALAS 415

Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRI-YAGIT-- 362
           L+          SV + +     +G  L L   L  + P        L   +   GIT  
Sbjct: 416 LSF-------DASV-FEIFGALLEGARLVLAPALLQVDPA------ALLELLEAQGITVL 461

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
             V     L  +L   A      A+           R +        GG        A P
Sbjct: 462 LLV----PLLLRLLLLA------ALAPDLISPCERLRQLL------SGGE-------ALP 498

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVP 480
           L+             +++  YG TE +    +  I         +G P    ++ ++D  
Sbjct: 499 LALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-- 556

Query: 481 EMNYTSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
                   +P P    GE+ + G  +  GY      T E         TGD+   L  G 
Sbjct: 557 -----QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGA 611

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENV 564
           L+ + RK +  K+ +G  +   +IE  
Sbjct: 612 LEYLGRKDSQVKI-RGFRIELGEIEAA 637

Length = 642

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 97.1 bits (242), Expect = 5e-21
 Identities = 124/517 (23%), Positives = 180/517 (34%), Gaps = 121/517 (23%)

Query: 89  VENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR 148
            E YPD       +   GT       TY E + A       L   G+++G R+ L   NR
Sbjct: 31  AERYPD----RPLLVFGGT-----RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81

Query: 149 PEWLIVDHACSAYSYISVP---------LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
            E+L V   C+    I+VP         L   L     + +V  A + A       L   
Sbjct: 82  IEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA------ALEAA 135

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
                 +P+V L+      D    S+   +G        L      +P P    +P D A
Sbjct: 136 DPGDLPLPAVWLL------DAP-ASVSVPAGWSTAPLPPL-----DAPAPAAAVQPGDTA 183

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-------------PSDIYMSYLPL 306
            I YTSGTTG  KG    H              QFY               D+  + LPL
Sbjct: 184 AILYTSGTTGPSKGVCCPHA-------------QFYWWGRNSAEDLEIGADDVLYTTLPL 230

Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            H                  F+Q     L     VL+P    S          G   AV+
Sbjct: 231 FHTNALN------------AFFQA---LLAGATYVLEPRFSAS----------GFWPAVR 265

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
             G     L  A  +     I+  Q   +           +R   RVR       P    
Sbjct: 266 RHGATVTYLLGAMVS-----ILLSQPARE----------SDR-AHRVRVALGPGVP--AA 307

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
           +    +  FG  +++GYG TET+ +I A+  G    G +G   P  E ++VD        
Sbjct: 308 LHAAFRERFGVDLLDGYGSTETNFVI-AVTHGSQRPGSMGRLAPGFEARVVD-------E 359

Query: 487 EDQPHPR---GEICVRG--PIVF-QGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
            DQ  P    GE+ +R   P  F  GY+    +T E    + W HTGD  +    G  + 
Sbjct: 360 HDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRF 418

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
           +DR K+  +  +GE ++  ++E V      V    ++
Sbjct: 419 VDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454

Length = 542

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 97.2 bits (243), Expect = 5e-21
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 13/128 (10%)

Query: 442 GYGMTETSCII--SAIDKGDNLS---GHVGSPNPACEIKLVDVPEMNYTSEDQPH-PRGE 495
            YGMTETS +   +  D  D L      VG   P  E+K+VD PE   T E  P   +GE
Sbjct: 347 AYGMTETSPVSTQTRTD--DPLEKRVTTVGRALPHLEVKIVD-PE---TGETVPRGEQGE 400

Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
           +C RG  V +GY+ +  +T E ID DGW+HTGD+ +    G + I+ R K++  +  GE 
Sbjct: 401 LCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGGEN 459

Query: 556 VAPEKIEN 563
           + P +IE 
Sbjct: 460 IYPREIEE 467

Length = 559

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 111/509 (21%), Positives = 198/509 (38%), Gaps = 82/509 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY  +S     + SGL   GL +G R+ +YL  R E +      +    + VP+   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            + V +++    +  +    + L+ L   +     +  +++VG         P   G + 
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            S+ +L + G     P  P    D+A I YTSG+TG PKG VL+H NL++     +  ++
Sbjct: 143 ASWPKLLALG--DADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
             P D  ++ LPL+  Y   NQ+ +        FY G  + L D L          +PR 
Sbjct: 201 NRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL----------LPR- 241

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
                  +  A++     +  +   A             P  +W +L      E     +
Sbjct: 242 ------DVLKALE-----KHGITGLA----------AVPP--LWAQLAQLDWPESAAPSL 278

Query: 414 RFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTE----TSCIISAIDKGDNLSGHVGSP 468
           R++ +    +    +  L+      ++   YG+TE    T      +D+       +G  
Sbjct: 279 RYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRR---PDSIGKA 335

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----REVIDGDGWL 524
            P  E+ ++        SE  P   GE+  RG +V  GY+ +  +T    R +    G L
Sbjct: 336 IPNAEVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGEL 391

Query: 525 HTGDIGLWLPG--------GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           H  ++ +W  G        G L  + R+  + K + G  V+P ++E V      V +   
Sbjct: 392 HLPELAVW-SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEVAYATGLVAEAVA 449

Query: 577 YG---DSFNSCLVAIV------AVDPDVL 596
           +G    +    +V +V       +D   L
Sbjct: 450 FGVPDPTLGQAIVLVVTPPGGEELDRAAL 478

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 92.7 bits (231), Expect = 9e-20
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +T+ ++      +  GL   GL++G  + L   N  E+  V   C A   I      +  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS----LPSTS 229
           PD + + +  ++ + IFC P  L+ +     E+  V  I+V+    + +      L    
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
           G +              P P      +D A + Y+SGTTG PKG +L+H N+I+N    S
Sbjct: 131 GAEDEFR----------PTPL-IDGKDDTAALLYSSGTTGLPKGVMLSHKNIIAN---LS 176

Query: 290 LMVQFY------PSDIYMSYLPLAHIY 310
            +           +D+ +++LP  H Y
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 92.6 bits (230), Expect = 9e-20
 Identities = 106/489 (21%), Positives = 192/489 (39%), Gaps = 79/489 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E      +    L   G+ +G  + L + N   +L +  A S    + +P+   L 
Sbjct: 28  ISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLA 87

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D V Y++  A  + +    +       F + +      +V+   D    +         
Sbjct: 88  ADEVAYILGDAGAKLLLVDEE-------FDAIVALETPKIVI---DAAAQADSRRLA--- 134

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
                   QG     P     P D+  + YTSGTT  PKG + ++GNL        + + 
Sbjct: 135 --------QGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALG 186

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
              S+  +   PL H+   A  +     G+AV  + G  L++  +       +  ++ R 
Sbjct: 187 LTASERLLVVGPLYHV--GAFDLP----GIAV-LWVGGTLRIHREFD--PEAVLAAIER- 236

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
            +R+       V  S                  +++        DR   + +   +GG  
Sbjct: 237 -HRLTCAWMAPVMLS-----------------RVLTVPDR----DRFDLDSLAWCIGG-- 272

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPA 471
                G       + DF +V    + ++ YG+TET    + ++ G  +   G  G     
Sbjct: 273 -----GEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAH 327

Query: 472 CEIKLVDVPEMNYTSED----QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
            EI++ D               P+ +GEIC+RGP V +GY+K+  +T E   GD W  +G
Sbjct: 328 VEIRIAD--------GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-WFRSG 378

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSC 584
           D+G     G L + DRKK++  ++ GE +A  ++E V  +   V +  + G   D +   
Sbjct: 379 DVGYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGER 437

Query: 585 LVAIVAVDP 593
           + A+V ++P
Sbjct: 438 ITAVVVLNP 446

Length = 497

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 104/455 (22%), Positives = 172/455 (37%), Gaps = 68/455 (14%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++YGE+ A  + +G+ L   G+++  R+ L +++  ++ I          + V L   L 
Sbjct: 31  LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D   Y++  +    +F   + L  + + + + P +   VVVG         P    V+L
Sbjct: 91  ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR--------PEAGEVQL 142

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI---SNVAGFSL 290
              L  +S+    P        +D A   Y+SG+TG PKG V TH N        A  +L
Sbjct: 143 AELLATESEQ-FKPAATQA---DDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQI---VSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
            ++    D+  S   L   Y   N +   +SV     +   +     + D L   +PTIF
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
             VP L    YA +                                           +  
Sbjct: 257 YGVPTL----YAAMLAD--------------------------------------PNLPA 274

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
               R+R   S    L  +V    +  FG  +++G G TE   I  +   GD   G  G 
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P   ++LV        +  +P   GE+ + GP     Y+ N  +TR+   G  W  +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQG-EWTRSG 389

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           D  +    G      R  ++ K++ G YV+P +IE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIE 423

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 39/198 (19%)

Query: 419 GASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV------GSPNPA 471
           GASP+SP  + + ++  FG    + YG TE   +I+ + K D+           G P P 
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 472 CEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
             + L+D        + +   +   GEICVRGP+V  GY+    +T E    DGWLHTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTGD 399

Query: 529 IGLWLPGGRLKIIDRKK--------NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG-- 578
           +      G   I+DRKK        N+F         P ++E+V A+   V Q  + G  
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVF---------PREVEDVLAEHPAVAQVAVIGVP 450

Query: 579 -DSFNSCLVAIVAVDPDV 595
            + +   + A+V + P  
Sbjct: 451 DEKWGEAVTAVVVLRPGA 468

Length = 524

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 87.9 bits (219), Expect = 2e-18
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 72/373 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A + YTSG+TG PKG ++ H  L++ +A           D  + +   +       
Sbjct: 92  PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSF------ 145

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
                                  D +V    IFP        + +G T  +     LR+ 
Sbjct: 146 -----------------------DASVW--EIFPP-------LLSGATLVLAPPEVLRDP 173

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLKV 433
              A    + +  V    PS +   L+       L   +R +  G   L  +++  + ++
Sbjct: 174 EALAELLREHRITVLHLVPS-LLRALLDALEPAALPS-LRLVIVGGEALPAELVRRWREL 231

Query: 434 CFGCQVMEGYGMTETSCIISA--IDKGDNLSGHV--GSPNPACEIKLVDVPEMNYTSEDQ 489
             G +++  YG TET+  ++   +D  D   G V  G P     + ++D        + +
Sbjct: 232 FPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-------EDLR 284

Query: 490 PHPR---GEICVRGPIVFQGYYKNEVQTRE-------VIDGDGWLHTGDIGLWLPGGRLK 539
           P P    GE+ + G  V +GY      T E          G+    TGD+  WLP G L+
Sbjct: 285 PVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLE 344

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC--FIYGDSF-NSCLVA-IVA----- 590
            + R  +  K+  G  +   +IE        V +       D      LVA +V      
Sbjct: 345 FLGRADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE 403

Query: 591 VDPDVLKDWAASQ 603
           +D   L+ + A +
Sbjct: 404 LDAAELRAFLAER 416

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 101/466 (21%), Positives = 170/466 (36%), Gaps = 71/466 (15%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
           + G +  +Y E+      + +GL   G+++G    + L N  E+ IV  A        V 
Sbjct: 43  ICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVL 102

Query: 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQ----TLNTLL-SFISEIPSVHLIVVVGGKDEHL 222
              +     +    +  E               +       S++P++  I+V G   E  
Sbjct: 103 ALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEA- 161

Query: 223 PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
                         L L  +  + P  F P K +++A    + G+TGTPK    TH +  
Sbjct: 162 -------------ELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYY 208

Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
            +V     +        Y+  LP AH Y  ++       G    FY G  + L  D +  
Sbjct: 209 YSVRRSVEICWLTQQTRYLCALPAAHNYPLSSP------GALGVFYAGGCVVLAPDPSPT 262

Query: 343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF 402
               FP + R    + A +  AV         L+  A +  +  + S             
Sbjct: 263 --DCFPLIERHKVTVTALVPPAVA--------LWMQAASKSRADLSS------------- 299

Query: 403 NKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS 462
                     ++ +  G +  S      +   FGCQ+ + +GM E     + +D    + 
Sbjct: 300 ----------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEII 349

Query: 463 GHV-GSP-NPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREV 517
               G P +P  E+++VD           P   GE   +  RGP  F+GYYK        
Sbjct: 350 FTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAA 402

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            D +G+ +TGD+    P G + ++ R K+      GE +A E+IEN
Sbjct: 403 FDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-GEKIAAEEIEN 447

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 87.4 bits (217), Expect = 6e-18
 Identities = 102/469 (21%), Positives = 167/469 (35%), Gaps = 97/469 (20%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSD---IYMSYLPLAHIYE 311
           P+ +A   +TSG+TG PK  + T   + +N+A    +    P     + + ++P  H   
Sbjct: 219 PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTM- 277

Query: 312 RANQIVSVYYGVAVGF----YQGDNLKLMD-------------DLAVLKPTIFPSVPRLY 354
                     G    F    + G  L + D             +L  + PT++ +VP   
Sbjct: 278 ----------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPA-- 325

Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS--GQT-PSKMWDRLVFNKIRERLGG 411
              YA +  A++    LR   F      K   +++  G T    +++R+    +R   G 
Sbjct: 326 --GYAMLAEAMEKDDALRRSFF------KNLRLMAYGGATLSDDLYERMQALAVRT-TGH 376

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
           R+ F                          GYG TET+   +         G +G P P 
Sbjct: 377 RIPFY------------------------TGYGATETAPTTTGTHWDTERVGLIGLPLPG 412

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
            E+KL  V +           + E+ V+GP V  GY+K+   T    D +G+   GD   
Sbjct: 413 VELKLAPVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR 461

Query: 532 WL----PGGRLKIIDRKKNIFKLAQGEYV--APEKIENVYAKCKFVLQCFIYGDSFNSCL 585
           ++    P   L    R    FKL+ G +V     + + V A    +    + G       
Sbjct: 462 FVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFI- 520

Query: 586 VAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE---MNAVGKEGQLRGFEYA 642
             +   +P   +  A       ED+ +      A  A+L E    +     G        
Sbjct: 521 GLLAWPNPAACRQLAGDPDAAPEDVVKH----PAVLAILREGLSAHNAEAGGSSS---RI 573

Query: 643 KAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELATSDQI 691
               LM EP S++ G +T    I +    ER A  +  +YAE    D I
Sbjct: 574 ARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAEPPGPDVI 622

Length = 624

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 86.3 bits (214), Expect = 1e-17
 Identities = 87/391 (22%), Positives = 147/391 (37%), Gaps = 77/391 (19%)

Query: 244 CSSPQPFCP-PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
            + P  F   PK +D A I +TSG+TG PKG V TH    + +     +      D  ++
Sbjct: 72  EAEPDAFIGIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLA 131

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
             P   ++           G A+G            +  + P + P+ P           
Sbjct: 132 AFPPFALF-----------GPALG------------VTTVIPAMDPTAP--------AAL 160

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG---GRVRFMGSG 419
           +  K +  +RE   +  + S          P+ +   +   +  E  G     +R + S 
Sbjct: 161 DPAKLAQAIREIGASCVFGS----------PA-LLKNVA--RYCEENGIQLPSLRRVLSA 207

Query: 420 ASPLSPDVM----DFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH----------- 464
            +P+ PD++      L      ++   YG TE +  +++I+  + L+             
Sbjct: 208 GAPVPPDLLRRFVANLMP--EAEIHTPYGATE-ALPVASIEGREVLAESAEPPEAGAGVC 264

Query: 465 VGSPNPACE---IKLVDVP--EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTR--EV 517
           VG P P  +   I + D P    +   E  P   GEI V GP V + YY     T+  ++
Sbjct: 265 VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKI 324

Query: 518 IDGDGWLH-TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            DG+   H  GD+G +   GRL    RK +  + A G  +    +E V+ +   V +  +
Sbjct: 325 SDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGG-TLFTVPVEQVFNRHPGVRRSAL 383

Query: 577 YG--DSFNSCLVAIVAVDPDVLKDWAASQGI 605
            G         V +V   P VL      +G 
Sbjct: 384 VGVGKPGTQAPVLVVEPMPPVLDRRKRLEGR 414

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 86.0 bits (214), Expect = 2e-17
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 44/230 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+          YPD + L   V  D    G +W TY E +     +  GLL  G++KG 
Sbjct: 17  TIGQLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGD 69

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISV---PLYDTLGPDAVKYVVNHAEIEAIFCIP--- 193
           R+G++  N PEW++   A +    I V   P Y       ++Y +N +  +A+       
Sbjct: 70  RVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFK 126

Query: 194 -----QTLNTLLSFI----------SEIPSVHLIVVVGGKDEHLPSLPSTSGVKL----I 234
                  L  L   +          + +P +  ++ +G  DE  P + +   +      +
Sbjct: 127 DSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGMLNFDELLALGRAV 184

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN 284
              +L ++  +         P+D   I YTSGTTG PKGA LTH N+++N
Sbjct: 185 DDAELAARQATL-------DPDDPINIQYTSGTTGFPKGATLTHRNILNN 227

Length = 559

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 86.3 bits (214), Expect = 2e-17
 Identities = 91/333 (27%), Positives = 140/333 (42%), Gaps = 73/333 (21%)

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
              +PED A I +TSG+ G PKG V +H +L++NV     +  F P+D +MS LPL H  
Sbjct: 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS- 418

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS------VPRL-YNRIYAGITN 363
                     +G+ VG +      L+    V    ++PS      VP L Y+R      N
Sbjct: 419 ----------FGLTVGLFT----PLLTGAEVF---LYPSPLHYRIVPELVYDR------N 455

Query: 364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
                GT     F   Y             ++  +   F ++R        ++ +GA  L
Sbjct: 456 CTVLFGT---STFLGNY-------------ARFANPYDFARLR--------YVVAGAEKL 491

Query: 424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMN 483
                   +  FG +++EGYG+TE + ++S         G VG   P  + +L+ VP + 
Sbjct: 492 QESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGI- 550

Query: 484 YTSEDQPHPRGEICVRGPIVFQGY------YKNEVQTREVIDGD---GWLHTGDIGLWLP 534
                     G + ++GP +  GY         EV T E   G+   GW  TGDI  +  
Sbjct: 551 -------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDE 603

Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
            G ++I  R K   K+A GE V+ E +E +   
Sbjct: 604 QGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALG 635

Length = 718

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 86.8 bits (215), Expect = 2e-17
 Identities = 127/601 (21%), Positives = 239/601 (39%), Gaps = 65/601 (10%)

Query: 108  VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
             G  +W+TYG V A  +E+GSGLL  G++ G  IG+        +I++ AC+ Y + ++P
Sbjct: 452  SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511

Query: 168  LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVV---GGKDEHLPS 224
            L        ++ +++  +I+ +F    ++  +L+      S  L  VV      DE   +
Sbjct: 512  LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILT----CRSRKLETVVYTHSFYDEDDHA 565

Query: 225  LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG---AVL--THG 279
            +     + LI Y  ++ +G   P P             Y    T +  G   AV+  TH 
Sbjct: 566  VARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHA 624

Query: 280  NL---ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM 336
            ++   IS +    ++   +   + + + P A ++ R   +    +G AV      +L+  
Sbjct: 625  DVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQ-- 682

Query: 337  DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
                  +PTI  + P L++     ++ A +    +   LF  A+  + + I   +  S +
Sbjct: 683  RAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSL 742

Query: 397  WDRLVFNKIRERLGGRVR--FMGSGASPLSPDVMDFLKVCFGCQVME-GYGMTETSCIIS 453
               + F   +E LGG V    +       S  +++ + VC+   + E  +  +E      
Sbjct: 743  LRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVF--- 799

Query: 454  AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ 513
             +D         G+P P+ ++ L           D+P     I   G +V     K E +
Sbjct: 800  CVD---------GTPAPSLQVDLEPF--------DEPSDGAGI---GQLVLA--KKGEPR 837

Query: 514  TREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ 573
                I             W     L+++     I      EYV   ++E ++++ ++V  
Sbjct: 838  RTLPI----------AAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVND 887

Query: 574  CFIYGDSFNSCLVAIVAVDPDVLK-DWAASQGIKF--EDLEQLCNDPRARAA---VLAEM 627
             F+Y D     ++AIV+ + D ++ +W  S  +        QL        A   + A+ 
Sbjct: 888  IFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF 946

Query: 628  NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELAT 687
              + KE  L      + V L P  F   +  LTP  KI+R      F+  I   Y+++ T
Sbjct: 947  ACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Query: 688  S 688
            +
Sbjct: 1007 T 1007

Length = 1452

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 60/300 (20%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
            P+D A + YTSG+TG PKG V+TH N+ + +     ++   P D               
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDR-------------- 142

Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                V    ++ F          D+++L   IF +       + AG T  +       E
Sbjct: 143 -----VLQFASIAF----------DVSIL--EIFTT-------LLAGGTLVIPPEELRLE 178

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
            L  A + ++ +  V+  TPS      +   +       +R +  G       ++D    
Sbjct: 179 DL--AEFLNRLRVTVAHLTPS------LLALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
               +++  YG TE +   +A         ++G P P     ++D               
Sbjct: 231 P--RRLLNTYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAV--- 285

Query: 494 GEICVRGPIVFQGYYKNEVQTREV-IDGDGWL--------HTGDIGLWLPGGRLKIIDRK 544
           GE+C+ GP V +GY      T E  I    WL         TGD+  +L  G L+ + RK
Sbjct: 286 GELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRK 345

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 84.4 bits (209), Expect = 5e-17
 Identities = 108/511 (21%), Positives = 184/511 (36%), Gaps = 139/511 (27%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+G++     +  +     G+ KG  + L L  R E+     A      I++P    L  
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 175 DAVKYVVNHAEIEAIFC-----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             + Y +  A I+ I C     +P+ ++       E  S  L+V+VG             
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLVLVGDPVPE-------- 157

Query: 230 GVKLISYLQLQSQGCSSPQPFCPP-------KPEDIATICYTSGTTGTPKGAVLTHGNLI 282
               I +     +   +  P             +DI  + +TSGTTG PK  ++ H +  
Sbjct: 158 --GWIDF----DKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK--MVEHDHT- 208

Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHI----YERANQIVSVYY----------------- 321
                                 PL HI    Y +  +   ++                  
Sbjct: 209 ---------------------YPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYG 247

Query: 322 ----GVAVGFYQGDNL---KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
               G AV  Y  D      L++ +     T F + P +Y R              ++E 
Sbjct: 248 QWIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKED 294

Query: 375 LFTAAYNSKKQAIVSGQ--TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
           L     +S +    +G+   P       VFN  +E+ G                      
Sbjct: 295 LSKYDLSSLRYCTTAGEPLNPE------VFNTFKEKTG---------------------- 326

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
                ++MEG+G TET+  I+     +   G +G P+P  +I ++D P+       +   
Sbjct: 327 ----IKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-PD---GKSCEVGE 378

Query: 493 RGEICVR----GPI-VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
            GEI +R     P+ +F GYY++  +T EV   DG+ HTGD       G L  + R  ++
Sbjct: 379 EGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DGYYHTGDTAWMDEDGYLWFVGRADDL 437

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            K + G  + P ++E+   +   VL+C + G
Sbjct: 438 IKSS-GYRIGPFEVESALIQHPAVLECAVTG 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 82.7 bits (205), Expect = 2e-16
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 9/200 (4%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G   W TY E+ AA   + + LL  GL+KG R+     N   + ++  AC+    + VP+
Sbjct: 33  GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
              L  + + Y+++H+   A    P    T  + ++ +P   LI+        +      
Sbjct: 92  NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL------SLVLGGREA 145

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G   + +      G S  +P      +D+A I YTSGT   PKGA+LTH  LI+     
Sbjct: 146 PG-GWLDFADWAEAG-SVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203

Query: 289 SLMVQFYPSDIYMSYLPLAH 308
            +       DI +  LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 81.8 bits (203), Expect = 2e-16
 Identities = 85/389 (21%), Positives = 133/389 (34%), Gaps = 111/389 (28%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS------------ 302
           P+D+A + YTSG+TG PKG  ++H  L++ +   +       SD  ++            
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVLE 151

Query: 303 -YLPL---AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
             LPL   A +   + + V             D  +L   +A  + TI            
Sbjct: 152 LLLPLLSGATVVIASAETVR------------DPERLARLIADERITIM----------- 188

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN---KIRERLGGRVRF 415
                                     QA     TP+  W R++     + RE L      
Sbjct: 189 --------------------------QA-----TPA-TW-RMLLAAGWRGRESLT----- 210

Query: 416 MGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV--GSPNPACE 473
              G   L  D+ + L    G ++   YG TET  I S   +     G V  G P    +
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTET-TIWSTCARVTAADGPVTIGRPIANTQ 268

Query: 474 IKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVI-------DGDGW 523
           + ++D        + QP P    GE+ + G  V +GY      T E          G   
Sbjct: 269 VYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRL 321

Query: 524 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF-- 581
             TGD+  W P GRL+ + R  +  K+ +G  +   +IE        V    +       
Sbjct: 322 YRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEGP 380

Query: 582 -NSCLVAIV------AVDPDVLKDWAASQ 603
            +  LVA V      A D + L+    + 
Sbjct: 381 GDQRLVAYVVPKAGAAPDAEALRAALRAT 409

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 83.4 bits (207), Expect = 2e-16
 Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 23/166 (13%)

Query: 413  VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS-----AIDKGD-----NLS 462
            +R + +GA  L P+V D  +  FG +++EGYG TETS + S      +         +  
Sbjct: 900  LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959

Query: 463  GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREVI- 518
            G VG P P   +++VD PE  +    +  P GE   I + GP V +GY  +  +T EVI 
Sbjct: 960  GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013

Query: 519  --DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
              DG GW  TGD G     G L I DR     K+  GE V    +E
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 67/329 (20%), Positives = 127/329 (38%), Gaps = 51/329 (15%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D A + +TSGTTG PK  + TH   + ++   +  +   P D+               
Sbjct: 80  ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDL--------------- 124

Query: 315 QIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                ++ +A  G+ +G    L     +          R          +A +    L  
Sbjct: 125 -----HWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRF---------DAERTLELL-- 168

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                    ++  + +   P   +  L+   +       +R + S   PL+P+V+D+ + 
Sbjct: 169 ---------ERYGVTTFCAPPTAYRMLLQQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRA 219

Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  + +GYG TET  +++     +   G +G P P   + ++D  E N     +    
Sbjct: 220 ATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE--- 275

Query: 494 GEICV----RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
           G+I V    R P +F+GY K+  +T   I    W  TGD  +    G    + R  ++ K
Sbjct: 276 GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIK 334

Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            + G  + P ++E+   +   V +  + G
Sbjct: 335 -SSGYRIGPFEVESALIEHPAVAEAAVVG 362

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.4 bits (204), Expect = 2e-16
 Identities = 101/396 (25%), Positives = 156/396 (39%), Gaps = 100/396 (25%)

Query: 213 VVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK 272
           VVVG        +    G+++++   L +     P        +D+A +  TSG+TG+PK
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPVETGE---DDLALMQLTSGSTGSPK 168

Query: 273 GAVLTHGNLISNVAGFSLMVQFYP-SDIYMSYLPLAH----IYERANQIVSVYYGVAVGF 327
              +THGNL +N     +  +F   +D+ +S+LPL H    +       V +Y+G     
Sbjct: 169 AVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMV---GFLTVPMYFGA---- 221

Query: 328 YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387
                     +L  + P  F   P L+  +   I+   K  GT+     TAA N    A+
Sbjct: 222 ----------ELVKVTPMDFLRDPLLWAEL---IS---KYRGTM-----TAAPNF-AYAL 259

Query: 388 VS----GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM-DFLKVC--FGCQ-- 438
           ++     Q     +D    + +R  L G        A P+ P  + D L     FG +  
Sbjct: 260 LARRLRRQAKPGAFD---LSSLRFALNG--------AEPIDPADVEDLLDAGARFGLRPE 308

Query: 439 -VMEGYGMTETSCIISAIDKGDNL--------------------SGHV------GSPNPA 471
            ++  YGM E +  +S    G  L                     G+       G P P 
Sbjct: 309 AILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPG 368

Query: 472 CEIKLVDVPEMNYTSED---QPHPR--GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
            E+++VD        ED    P PR  G I +RG  V  GY   +       D DGWL T
Sbjct: 369 LEVRVVD--------EDGQVLP-PRGVGVIELRGESVTPGYLTMD-GFIPAQDADGWLDT 418

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           GD+G     G + +  R K++  +A G  + P  IE
Sbjct: 419 GDLGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE 453

Length = 545

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 15/171 (8%)

Query: 413 VRFMGSGASPLSPDVMDFLK---VCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGS 467
           VR+  +G +P   ++M         FG    +G+GMTETS  +  + + D     G +G 
Sbjct: 266 VRWFYNGGAPCPEELMREFIDRGFLFG----QGFGMTETSPTVFMLSEEDARRKVGSIGK 321

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P   C+ +L+D       ++ +    GE+ +RGP V + Y+     T E I  DGWL TG
Sbjct: 322 PVLFCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTG 376

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           D+      G + I+ RKK +  ++ GE + P ++E V  K   V +  + G
Sbjct: 377 DLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVG 426

Length = 496

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 79.9 bits (198), Expect = 9e-16
 Identities = 60/177 (33%), Positives = 84/177 (47%), Gaps = 33/177 (18%)

Query: 442 GYGMTE---TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICV 498
           GYG+TE   T C   A    D L+G VGSP P  E+KLVD               GEI +
Sbjct: 270 GYGLTEMASTVCAKRA----DGLAG-VGSPLPGREVKLVD---------------GEIWL 309

Query: 499 RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP 558
           RG  +  GY++   Q   +++ +GW  T D G W   G L I+ R  N+F  + GE + P
Sbjct: 310 RGASLALGYWRQG-QLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQP 366

Query: 559 EKIENVYAKCKFVLQCFIY--GDS-FNSCLVAIVAVD----PDVLKDWAASQGIKFE 608
           E+IE V  +   V Q F+    D+ F    VA+V  D       L +W   +  +F+
Sbjct: 367 EEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQ 423

Length = 458

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 79.9 bits (198), Expect = 1e-15
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 26/199 (13%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E+    + I + L   G   G R+ L      +++     C     I+VP      
Sbjct: 24  LTYAELDRRARAIAARLQALGAP-GDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRR 82

Query: 174 P----DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                  +  ++  A   A+      L  L + ++   ++ L+++          L + +
Sbjct: 83  LGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIA------ADDLAALA 136

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
                          +  +P  PP P+DIA + YTSG+TG PKG ++THGNL++N+   +
Sbjct: 137 A--------------ADWRP-PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181

Query: 290 LMVQFYPSDIYMSYLPLAH 308
                 P D+ +S+LPL H
Sbjct: 182 RAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 62/261 (23%)

Query: 414 RFMGSGASPLSPDVM---DFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP 470
           RF+  G + +SP ++     L    G  V EGYG++E + ++S    G +  G VG P P
Sbjct: 240 RFVAVGGARVSPSLLQRARAL----GLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLP 295

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
             ++ +         + D     GEI VRG  +  GY      T      D W  TGD+G
Sbjct: 296 HVQVSI---------AND-----GEILVRGS-LMLGYLGEPPAT------DDWWATGDLG 334

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAI 588
                G L I  RKKN+   + G  V+PE +E+   +   + Q  ++GD+  F   L+  
Sbjct: 335 HLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDAQPFLVALI-- 392

Query: 589 VAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYA--KAVT 646
                       A   I  + LE            + ++NA     QL   +YA  K   
Sbjct: 393 ----------VPAPN-ISDDQLEA----------AVQQINA-----QLP--DYARIKTWV 424

Query: 647 LMPEPFSVENGLLTPTFKIKR 667
            + +PFS  NGLLT   + +R
Sbjct: 425 RLRQPFSTANGLLTANGRPRR 445

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 77.7 bits (192), Expect = 7e-15
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 79  GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKG 138
            TL +    A E+ P      T +  DG     ++ +Y E+    + I +GL   GL+ G
Sbjct: 10  RTLEEALQRAAEHAPGRG--ITYIDADG---SEEFQSYAELLEEAERILAGLRALGLKPG 64

Query: 139 VRIGLYLINRPEWLIVDH-ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN 197
             + +  + R E  +    AC    ++ VP+   + P    Y   +A +  +  I + L 
Sbjct: 65  DSV-ILQLERNEDFVTAFWACVLGGFVPVPV--AVPPT---YDEPNAAVAKLRNIWELLG 118

Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS-QGCSSPQPFCPPKPE 256
           + +  +++   V            L  L + +G++ +  L ++  +      P  P +P+
Sbjct: 119 SPV-ILTDAALV----------AALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPD 167

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           D A +  TSG+TG PK  VLTH N+++  AG   +  F P D+ ++++PL H+
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 77.5 bits (191), Expect = 8e-15
 Identities = 103/443 (23%), Positives = 174/443 (39%), Gaps = 76/443 (17%)

Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V+ AC     + +P    L    + Y +  ++ + I    
Sbjct: 63  GLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSD 122

Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS--QGCSSPQPFC 251
           +    + S  SE PS+   ++V        S  S  G     +L  +   +  S+     
Sbjct: 123 ELAPAVDSIASECPSLKTKLLV--------SEHSRDG-----WLNFKELLKEASTEHTCV 169

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
             K ++   I +TSGTTG PK A  +H +L +         +   PSDI  +      I 
Sbjct: 170 KTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIK 229

Query: 311 ERANQIVSVYYGVAVGFY----QGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                + S +   A  F     + D   ++  L+    T F S P +Y  +         
Sbjct: 230 AAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLV-------- 281

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                            +Q + S +  S                  +R   +G  PL+P+
Sbjct: 282 -----------------QQDLTSYKFKS------------------LRHCVTGGEPLNPE 306

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDVPEMNYT 485
           V++  K   G  + EGYG TET  +I A  KG  +  G +G  +P  +++++D    N  
Sbjct: 307 VLEQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVL 364

Query: 486 SEDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
               P   G+I +R  P     +F  Y  N  +T   I GD ++ TGD G+    G    
Sbjct: 365 P---PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWF 420

Query: 541 IDRKKNIFKLAQGEYVAPEKIEN 563
           + R  ++   + G  + P ++E+
Sbjct: 421 VGRADDVI-NSSGYRIGPFEVES 442

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 62/322 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D+    YTSGTTG PKG  +    L +          FY    YM Y     I  R +
Sbjct: 87  DDDLFAQMYTSGTTGLPKGVPVPLNALAA----------FYA---YMRY----AIDLRDD 129

Query: 315 QIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIF----PSVPRLYNRIYA-GITNAVKAS 368
               V++ +A  G+  G    +   LA+   T+F     +    Y+ +   G+TN   + 
Sbjct: 130 ---DVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSP 186

Query: 369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM 428
              R              +++                  R+  ++R   S   PL+P+V+
Sbjct: 187 TAYR-------------MLMAAGAD-----------AAARIKLKLRVASSAGEPLNPEVV 222

Query: 429 DFLKVCFGCQVMEGYGMTETSCII--SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
            + +   G  + + YG TET   +        +  +G +G P P   I ++D  +     
Sbjct: 223 RWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQ--- 278

Query: 487 EDQPHPRGEICVR----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
                  G++ +       + F GY+ +  +T E+I G  W  TGD+      G    I 
Sbjct: 279 PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAG-RWYVTGDLVERDEDGYFWFIG 337

Query: 543 RKKNIFKLAQGEYVAPEKIENV 564
           R  ++   A G  + P  +E+ 
Sbjct: 338 RADDVIISA-GYRIGPFDVESA 358

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 23/143 (16%)

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGH-----VGSPNPACEIKLVDVPEMNYTSEDQ 489
           FG +++  YGMTET  I+  I  GD          +G P    E ++ D         ++
Sbjct: 311 FGVRLLTSYGMTET--IVGII--GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HNR 359

Query: 490 PHPR---GEICVRG---PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
           P P    GEIC++G     +F+ YY +   T +V++ DGWLHTGD G     G    +DR
Sbjct: 360 PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR 419

Query: 544 KKNIFKLAQGEYVAPEKIENVYA 566
           + N+ K   GE V+  ++EN+ A
Sbjct: 420 RCNMIKRG-GENVSCVELENIIA 441

Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 49/136 (36%), Positives = 65/136 (47%), Gaps = 15/136 (11%)

Query: 436 GCQVMEG-YGMTET-SC--IISAIDKGD-NLSGH---VGSPNPACEIKLVDVPEMNYTSE 487
           G  + E  +GMTET +C    +     D +L      VG P P  E K+ D      T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407

Query: 488 DQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
             P    GEI VR P + +GY+     T E +  DGWLHTGDIG     G L  + R+K 
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKE 466

Query: 547 IFKLAQGEYVAPEKIE 562
           + K+  G  V P ++E
Sbjct: 467 MLKV-NGMSVFPSEVE 481

Length = 567

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHACSAYSYISV 166
           +   + MTY ++     ++ + L++   ++KG RI +   N  E++++  A +    I+V
Sbjct: 22  ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           PL   L  + + + +  +    +F      N  LS         +I +            
Sbjct: 82  PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITS---------- 131

Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
                       L+         F          ICYTSGTTG PKGAVLT  N+  N  
Sbjct: 132 ------------LKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179

Query: 287 GFSLMVQFYPSDIYMSYLPLAHI 309
             +  +     D  +  LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202

Length = 496

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 75.7 bits (187), Expect = 3e-14
 Identities = 69/269 (25%), Positives = 90/269 (33%), Gaps = 77/269 (28%)

Query: 411 GRVRFMGSGASPLSPDVMD-----FLKVCFGCQVME-GYGMTETSCIISA---------- 454
              R   +GA P+  D ++     F    F  +     YG+ E +  +S           
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVL 329

Query: 455 -IDKGDNLSGHV----------------GSPNPACEIKLVDVPEMNYTSEDQPHPR-GEI 496
            +D+     G                  G P P  E+++VD PE   T    P    GEI
Sbjct: 330 RVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PE---TRRPLPDGEVGEI 385

Query: 497 CVRGPIVFQGYYKNEVQTREV------IDGDGWLHTGDIGLWLPG-----GRLK--IIDR 543
            VRGP V  GY+     T E        D  GWL TGD+G    G     GRLK  II R
Sbjct: 386 WVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLIIIR 445

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQC-----FIYGDSFNSCLVAIVAVDPDVLKD 598
            +N +         P+ IE    +    L+      F         LV +  V    L  
Sbjct: 446 GRNHY---------PQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLP- 495

Query: 599 WAASQGIKFEDLEQLCNDPRARAAVLAEM 627
                     DL  L      RAAV  E 
Sbjct: 496 ---------ADLAALAE--AIRAAVAREH 513

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 5e-14
 Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 26/159 (16%)

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET---SCIISAIDKGDNLS 462
           R  +   V  M +GA+P    V+  ++   G  +   YG+TET   + + +   + D L 
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 463 --------GHVGSPNPACE-IKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGYY 508
                      G   P  E + ++D   M      QP P      GEI  RG IV +GY 
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403

Query: 509 KNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
           KN   T E   G GW HTGD+ +  P G +KI DR K+I
Sbjct: 404 KNPKATEEAFAG-GWFHTGDLAVLHPDGYIKIKDRSKDI 441

Length = 545

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 44/173 (25%)

Query: 411 GRVRFMGSGASPLSPDV-MDFLKVC--FGC--QVME-GYGMTET-SCIISA--IDKGDNL 461
             +R++ +    +       FL++   +G     +   +GM+ET S +  +     G + 
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348

Query: 462 SGH------------------------VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEIC 497
            G                         +G P P   I++VD        +    P GE+ 
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------EDGALLPEGEVG 401

Query: 498 ---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
              VRGP V  GYY+N     E    DGW  TGD+G +L  GRL I  R+K++
Sbjct: 402 RLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDGRLTITGREKDM 453

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 94/389 (24%), Positives = 147/389 (37%), Gaps = 87/389 (22%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNV-AGFSLMVQFYP--SDIYMSYLPLAHIYE 311
           PED+A I +TSGT   PKG  LTH NL++N  A       F P   D+ MS+LP  H Y 
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF---FSPKEDDVMMSFLPPFHAYG 238

Query: 312 -RANQIVSVYYGVAVGF-----YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
             +  +  +  GV V F     Y    ++++D+    K T   S P  ++ I   +  A 
Sbjct: 239 FNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDE---AKVTFLGSTPVFFDYI---LKTAK 292

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF-NKIRERLGGRVRFMGSGASPLS 424
           K    L          S +  ++ G           F + + +            A    
Sbjct: 293 KQESCL---------PSLRFVVIGGD---------AFKDSLYQ-----------EALKTF 323

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMN 483
           P +          Q+ +GYG TE S +I+            VG P    ++ +V      
Sbjct: 324 PHI----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV------ 367

Query: 484 YTSEDQ--PHPRGE---ICVRGPIVFQGYYKNEVQTREV-IDGDGWLHTGDIGLWLPGGR 537
             SE+   P   GE   +  RG  +F GY   +     V + G+ W  TGD+G     G 
Sbjct: 368 --SEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGE 425

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAK---------CKFVLQCFIYGDSFNSCLVAI 588
           L +  R     K+   E V+ E +E++  +            ++ C + G+    CL   
Sbjct: 426 LFLKGRLSRFVKIG-AEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTT 484

Query: 589 VAVD----PDVLKDWAASQGIKFEDLEQL 613
                    D+LK+   S  +K     Q+
Sbjct: 485 FPTSISEVNDILKNSKTSSILKISYHHQV 513

Length = 539

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 69.8 bits (172), Expect = 8e-13
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           +D A I YTSGTTG PKG +LTH NL++N       V   P D+Y+   PL H 
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA 54

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 70.3 bits (173), Expect = 1e-12
 Identities = 124/535 (23%), Positives = 208/535 (38%), Gaps = 99/535 (18%)

Query: 86  IYAVENYPDYKYLGTRVRV---DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIG 142
            +A    PD      R  +    GT      +TY E+      +  GLL  G++ G  + 
Sbjct: 56  AHAARRAPD------RAALIDERGT------LTYAELDEQSNALARGLLALGVRAGDGVA 103

Query: 143 LYLINRPEWLIVDHACSAYSYISVPLYDT-LGPDAVKYVVNHAEIEAIFCIPQTLNTLLS 201
           +   N     ++    +      + L +T      +  V     ++A+         LLS
Sbjct: 104 VLARNH-RGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALV-YDDEFTDLLS 161

Query: 202 FI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIAT 260
            +  ++  +         DE     PS S  + +    L +   ++P P  PPKP  I  
Sbjct: 162 ALPPDLGRLRAWGGNPDDDE-----PSGSTDETLD--DLIAGSSTAPLP-KPPKPGGI-- 211

Query: 261 ICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY 320
           +  TSGTTGTPKGA     + ++ +AG    V F   +  +   P+ H    A+  +++ 
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271

Query: 321 YGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379
            G  V   +  D    ++D+A  K T    VP + +RI       +     +  K  T+ 
Sbjct: 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRI-------LDLGPEVLAKYDTS- 323

Query: 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
             S K   VSG                              S LSP++       FG  +
Sbjct: 324 --SLKIIFVSG------------------------------SALSPELATRALEAFGPVL 351

Query: 440 MEGYGMTETSCIISAIDKGDNLS---GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE- 495
              YG TE +   + I   ++L+   G VG P     +K++D             PRG  
Sbjct: 352 YNLYGSTEVA--FATIATPEDLAEAPGTVGRPPKGVTVKILD-------ENGNEVPRGVV 402

Query: 496 --ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
             I V     F+GY   + + +++I  DG L +GD+G +   G L +  R  ++  ++ G
Sbjct: 403 GRIFVGNGFPFEGY--TDGRDKQII--DGLLSSGDVGYFDEDGLLFVDGRDDDMI-VSGG 457

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKDW 599
           E V P ++E++ A    V++  + G   + F   L A V      A+D D +KD+
Sbjct: 458 ENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDY 512

Length = 549

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 68.5 bits (168), Expect = 5e-12
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 16/224 (7%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+        + L   G+  G R+ ++L N P++ IV         + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP------ST 228
             + Y +N A  E +  + Q    +    +E    H+IV      + LP+ P      S 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVT--SLADVLPAEPTLPLPDSL 177

Query: 229 SGVKL-----ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
              +L     I  L    + C++P P  PP  + +A + YT GTTG PKG   T  +++ 
Sbjct: 178 RAPRLAAAGAIDLLPAL-RACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 284 NVAGFSLM-VQFYPSDIYMSYLPLAHIY-ERANQIVSVYYGVAV 325
             A    + V      +++S+LP   I  E    +  ++ G  +
Sbjct: 237 TAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280

Length = 567

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 68.4 bits (168), Expect = 6e-12
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 37/210 (17%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            + D F    +  PD        RV   V G + +TY E+      +   L+  GL  G 
Sbjct: 4   NIADLFEAVADAVPD--------RV-ALVCGDRRLTYAELEERANRLAHYLIAQGLGPGD 54

Query: 140 RIGLYLINRPEWLIVDHACSA---------YSYISVPLYDTLGPDAVKYVVNHAEIEAIF 190
            +G+Y  NR E++                 Y Y+          D ++Y+++ ++  A+ 
Sbjct: 55  HVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV---------EDELRYLLDDSDAVALV 105

Query: 191 CIPQTLNTLLSFISEIPSVHLIVVVG-GKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
              +    +   +  +P +  +VVV  G    L        V    Y    + G S  + 
Sbjct: 106 YEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLP----GAV---DYEDALAAG-SPERD 157

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
           F    P+D+  + YT GTTG PKG +    
Sbjct: 158 FGERSPDDLYLL-YTGGTTGMPKGVMWRQE 186

Length = 533

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 67.8 bits (166), Expect = 8e-12
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 131 LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           LF+  G++KG ++ L+L N PE++      +    I VP+   L  +   +++ +++   
Sbjct: 53  LFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASL 112

Query: 189 IFCIPQTLNTLLSFISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
           +    Q          E    +  I +         +LP+  GV   S+ QL++Q  ++ 
Sbjct: 113 LVTSAQFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATL 164

Query: 248 QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLP 305
               P   +D A I +TSGTT  PKG V+TH NL    AG+  +        D+Y++ +P
Sbjct: 165 CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMP 222

Query: 306 LAHI 309
             HI
Sbjct: 223 AFHI 226

Length = 517

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 98/442 (22%), Positives = 172/442 (38%), Gaps = 99/442 (22%)

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFC------IPQTLNTLLSFISEIPSVHLIVVVGGKDE 220
           P+   L   ++  ++ HA+ + +F       + + +  LLS      ++ +I +      
Sbjct: 93  PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFI------ 146

Query: 221 HLPSLPSTSGVKLISYLQLQSQGCSSP----QPFCPPKPEDIATICYTSGTTGTPKGAVL 276
           H    P     + + Y  L  +G  +P    + F      D  ++ YTSGTT  PKG V+
Sbjct: 147 HEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVI 206

Query: 277 THG----NLISNVAGFSLMVQFYPSDIYMSYLPLAH---------IYERANQIVSVYYGV 323
           +H     + +S + G+ +     P  +Y+  LP+ H            R    V + +  
Sbjct: 207 SHRGAYLSTLSAIIGWEMGT--CP--VYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT 262

Query: 324 AVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK 383
           A   Y+  N+++ +       T    VP ++N +  G              L  +  +  
Sbjct: 263 APEIYK--NIEMHN------VTHMCCVPTVFNILLKG------------NSLDLSPRSGP 302

Query: 384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGY 443
              +  G  P          K  +RLG +V                          M  Y
Sbjct: 303 VHVLTGGSPPPA-----ALVKKVQRLGFQV--------------------------MHAY 331

Query: 444 GMTETSCII---SAIDKGDNLSGH----VGSPNPACEIKLVDVPEMNYTSEDQPHPR--- 493
           G+TE +  +      D+ + L  +    + +      + L DV   N     +  PR   
Sbjct: 332 GLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKN-KETQESVPRDGK 390

Query: 494 --GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551
             GEI ++G  + +GY KN   T E     GWL+TGD+G+  P G ++I DR K+I  ++
Sbjct: 391 TMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDII-IS 448

Query: 552 QGEYVAPEKIENVYAKCKFVLQ 573
            GE ++  ++ENV  K   VL+
Sbjct: 449 GGENISSVEVENVLYKYPKVLE 470

Length = 579

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 17/198 (8%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPA 471
           R +   A+P   DV   +   +G  + E YG TE+  +  A    D LS  G VG   P 
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFA-TSEDALSHPGTVGKAAPG 332

Query: 472 CEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E++ VD        + +P P+   GEI  R        Y N+ + R  ID  G++ +GD
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGD 385

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG--DS-FNSCL 585
           +G     G L + DRK+++  ++ G  + P +IE V      V  C ++G  D+ F   L
Sbjct: 386 VGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEAL 444

Query: 586 VAIVAVDPDVLKDWAASQ 603
           +A+V   P    D A  +
Sbjct: 445 MAVVEPQPGATLDEADIR 462

Length = 509

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)

Query: 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII 452
           P  +W   +   +  +   R+R   S   PL+P+V++ +K  +G  + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP--RGEICVR---GPI-VFQG 506
                     G +G P P   + L+D        E +  P   GEI +     PI +  G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293

Query: 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY-VAPEKIENV 564
           Y  +  +T     G G+  TGD       G L  + R  ++FK    +Y ++P ++E+ 
Sbjct: 294 YMGDPEKTAAAFRG-GYYRTGDKAYRDEDGYLWFVGRADDVFK--SSDYRISPFEVESA 349

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 37/183 (20%)

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           RI L L N  +W+I D AC     + +P+         ++++N A  + +        + 
Sbjct: 26  RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASA 85

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
           L          L + +          PS + V+L                     P   A
Sbjct: 86  LHTPFATLGEDLYIAL---------RPSANPVEL---------------------PAGTA 115

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI--YMSYLPLAHIYERANQIV 317
            I YTSG+TG PKG  L+    +  VA  SL       +   ++  LPLA + E    I 
Sbjct: 116 KITYTSGSTGQPKGVCLSAAA-LETVAQ-SLAEAIAILEPERHLCLLPLATLLE---NIA 170

Query: 318 SVY 320
            VY
Sbjct: 171 GVY 173

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 34/253 (13%)

Query: 396 MWDRL--VFNKIRERLGGR-VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII 452
           M+DR+  +  ++R R  GR +RF  +  S + PDV+      FG  +   Y  TE   I 
Sbjct: 294 MFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMI- 352

Query: 453 SAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQG 506
            A     +L       G P    EI+++D        + +  P GE   I VR    F G
Sbjct: 353 -ATATPADLRAAPDTAGRPAEGTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDG 404

Query: 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA 566
           Y      T++  DG  ++ +GD+G     GRL ++ R   +  ++ GE V P ++E   A
Sbjct: 405 YTSG--STKDFHDG--FMASGDVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLA 459

Query: 567 KCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND--PRARA 621
               V +  + G   + +   L A V + P      A  + +K    + L N   PR   
Sbjct: 460 THPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS---ATPETLKQHVRDNLANYKVPR-DI 515

Query: 622 AVLAEM--NAVGK 632
            VL E+   A GK
Sbjct: 516 VVLDELPRGATGK 528

Length = 537

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 65.3 bits (160), Expect = 4e-11
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           +  ATI +TSG+TG PK  V T GN +++  G +  +   P D ++  LPL H+
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 65.7 bits (161), Expect = 6e-11
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
             KP+D ATI ++SG+ G PKG +L+H N++SN+   S +      D+ +S LP  H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 39/200 (19%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV-------- 166
           TY E+     +  + L   G++KG R+ +++   PE            Y ++        
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPEL-----------YFALLGALKNGA 123

Query: 167 ---PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVVGGKDEH 221
              PL++    +AV+  +  +E + +     T   LL      ++PS+  +++VG   E 
Sbjct: 124 IVGPLFEAFMEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEE 179

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP-KPEDIATICYTSGTTGTPKGAVLTHGN 280
            P          + +  L  Q  +S +        ED A + YTSG+TG PKG +  H  
Sbjct: 180 GP--------GTLDFNALMEQ--ASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNA 229

Query: 281 LISNVAGFSLMVQFYPSDIY 300
           ++ +      ++  +  D+Y
Sbjct: 230 MLQHYQTGKYVLDLHEDDVY 249

Length = 570

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 23/144 (15%)

Query: 435 FGCQVMEGYGMTETSCI--ISAIDKG-DNLSGHV--------GSPNPACEIKLVDVPEMN 483
            G +V   +GMTE S +  ++A+      L G          G P    E+K+ D     
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD---- 372

Query: 484 YTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              ++ P      G + VRGP V   YY+ +    E++D DG+  TGD+      G ++I
Sbjct: 373 -AGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRI 428

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
            DR K++ K + GE+++   +EN+
Sbjct: 429 TDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 63.7 bits (156), Expect = 2e-10
 Identities = 123/621 (19%), Positives = 190/621 (30%), Gaps = 233/621 (37%)

Query: 47  LPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDG 106
           LP  L+  K     +  S  +L D F +             A   +PD       +  + 
Sbjct: 18  LPGILRGLKRTALITPDSKRSLGDVFEE-------------AAARHPD----RPALLFED 60

Query: 107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WL---------- 152
                  ++Y E++A            G+ KG  + L + NRPE    WL          
Sbjct: 61  QS-----ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVA 115

Query: 153 -----------------------IVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI 189
                                  IV           V  ++    D  +           
Sbjct: 116 LLNTQQRGAVLAHSLNLVDAKHLIVGEEL-------VEAFEEARADLARPPRLWVAGGDT 168

Query: 190 FCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
              P+    L +  +  P+               +  S SGV                  
Sbjct: 169 LDDPEGYEDLAAAAAGAPT--------------TNPASRSGVTA---------------- 198

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
                 +D A   YTSGTTG PK AV++H   +  + GF  +++  P D+    LPL   
Sbjct: 199 ------KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPL--- 249

Query: 310 YERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
                     Y+                       T+  S               + A  
Sbjct: 250 ----------YHNTGG-------------------TVAWSS-------------VLAAGA 267

Query: 370 T--LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI--------------------RE 407
           T  LR K F+A               S+ WD +   +                      +
Sbjct: 268 TLALRRK-FSA---------------SRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD 311

Query: 408 RLGGRVRFM-GSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHV 465
           R   R+R M G+G   L PD+ D  +  FG  +++E Y  +E    +  I+   N  G V
Sbjct: 312 R-DHRLRLMIGNG---LRPDIWDEFQQRFGIPRILEFYAASE--GNVGFINV-FNFDGTV 364

Query: 466 G-SP-NPACEIKLVDVPEMNYTSED---------QPHPRGE-------ICVRGPIVFQGY 507
           G  P   A    +V   + +  + +              GE       I  RGP  F GY
Sbjct: 365 GRVPLWLAHPYAIV---KYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGP--FDGY 419

Query: 508 YKNEVQTREVI------DGDGWLHTGD----IGLWLPGGRLKIIDRKKNIFKLAQGEYVA 557
              E  + + I       GD W +TGD     G     G  + +DR  + F+  +GE VA
Sbjct: 420 TDPE-ASEKKILRDVFKKGDAWFNTGDLMRDDGF----GHAQFVDRLGDTFRW-KGENVA 473

Query: 558 PEKIENVYAKCKFVLQCFIYG 578
             ++EN  +    V +  +YG
Sbjct: 474 TTEVENALSGFPGVEEAVVYG 494

Length = 600

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 107/504 (21%), Positives = 185/504 (36%), Gaps = 115/504 (22%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E+ A  + + + L   G++   R+ +   N      VD        I++     LG
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNS-----VDAV------IALLALHRLG 77

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
             AV  ++N          P  +  L+    E+ +  + V     D    S      + L
Sbjct: 78  --AVPALMNPR------LKPAEIAELIKR-GEMTAAVIAVDAQVMDAIFQSGSGVRVLAL 128

Query: 234 ISYLQLQSQGCSSPQPFCPP-KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
              + L     + P    PP +PE  A + YTSGTTG PKGAV+      S V   S   
Sbjct: 129 GDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQA 188

Query: 293 --QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG-------------FYQGDNLKLMD 337
             +    ++ +  +PL H        V  ++ V V              F   D LKL++
Sbjct: 189 GLRHGRHNVVLGLMPLYH--------VIGFFAVLVAALALDGTYVVVEEFDPADALKLIE 240

Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM- 396
              V                      ++ A+ T  + L  A          +   P K+ 
Sbjct: 241 QERV---------------------TSLFATPTHLDALAAA----------AEGAPLKLD 269

Query: 397 -WDRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISA 454
             + + F               +GA+   PD V++ +      + +  YG TE    +++
Sbjct: 270 SLEHVTF---------------AGAT--MPDAVLERVNQHLPGEKVNIYGTTEA---MNS 309

Query: 455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE----ICVRGPIVFQGYYKN 510
           +   D  +G    P    E+++V +      S D+  P GE    +       F GY   
Sbjct: 310 LYMRDPRTGTEMRPGFFSEVRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQ 365

Query: 511 EVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF 570
              T E +  DGW  T D+ +  P G ++I+ R  ++  ++ GE + P ++E V  +   
Sbjct: 366 PQATAEKLQ-DGWYRTSDVAVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPG 423

Query: 571 VLQCFI-------YGDSFNSCLVA 587
           V +  +       +G S  +C+V 
Sbjct: 424 VTEVVVIGLPDERWGQSVTACVVP 447

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV-GSP-NPA 471
           R +  G + LS  +   +    GCQ+ + +GM E     + +D    +  H  G P +P 
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E+++VD       ++  P   GE+     RGP   +GYY+         D DG+  +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           +    P G L +  R K+      GE +A E++EN
Sbjct: 421 LVRRDPDGYLVVEGRVKDQINRG-GEKIAAEEVEN 454

Length = 542

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 49/176 (27%), Positives = 64/176 (36%), Gaps = 48/176 (27%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQ------VMEGYGMTETSCIISAIDKG--------- 458
           R  G GA  + PDV+      F          M  YG+ E +  +S    G         
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361

Query: 459 -DNLSGH------------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICV 498
            D L                      G   P  EI++ +           P    G ICV
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNE-----AGMPLPERVVGHICV 416

Query: 499 RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNI 547
           RGP +  GY+++E     V+  DGWL TGD+G  L G     GR K  II   +NI
Sbjct: 417 RGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNI 471

Length = 579

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 63/332 (18%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSYLPLAHIYER 312
             +D+A I +TSGTTG PKG +  H ++++    F   V Q  P D+++   PLA  +  
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204

Query: 313 ANQIV-SVYYGV-AVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
              ++  + +G  AV   Q     L+  +   + TI  + P  Y      +   VKA   
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR----AMLIKVKAFDI 260

Query: 371 LREKLFTAAYNSKKQAIVSGQT-PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
                     +S ++ + +G+T P+K+W         ER G +                 
Sbjct: 261 ----------SSLRKCVSAGETLPAKVWQDW-----YERTGLK----------------- 288

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQ 489
                    +++G G TE   I  + ++ +   G  G P P  E ++VD        +  
Sbjct: 289 ---------IIDGIGATEMLHIFISANEENAKPGATGKPVPGYEARIVD-------DQGN 332

Query: 490 PHPRGE---ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
             PRGE   + VRGP   + Y  +E Q   V   DGW  TGDI      G    + R  +
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDD 389

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           +  ++ G  +A  ++E+       V +C + G
Sbjct: 390 MI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.7 bits (150), Expect = 7e-10
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 17/74 (22%)

Query: 248 QPFCP--PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP--------- 296
           QP     P+ +D+A + YT GTTG  KGA+LTH NL++N      M+Q            
Sbjct: 197 QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVAN------MLQCRALMGSNLNEG 250

Query: 297 SDIYMSYLPLAHIY 310
            +I ++ LPL HIY
Sbjct: 251 CEILIAPLPLYHIY 264

Length = 562

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 61.5 bits (150), Expect = 8e-10
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 27/141 (19%)

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGHV----GSP-NPACEIKLVDVPEMNYTSEDQ 489
            GCQ+ + +GM E     + +D  D     +    G P +P  E+ + D       ++  
Sbjct: 324 LGCQLQQVFGMAEGLVNYTRLDDSDE---RIFTTQGRPMSPDDEVWVAD-------ADGN 373

Query: 490 PHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           P P+GE+     RGP  F+GYYK+        D +G+  +GD+    P G + ++ R+K+
Sbjct: 374 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD 433

Query: 547 IFKLAQ----GEYVAPEKIEN 563
                Q    GE +A E+IEN
Sbjct: 434 -----QINRGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 103 RVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162
           RV+G +  Y   TY +     K++   L   G++ G R+G    N    L   +  S   
Sbjct: 32  RVEGDIHRY---TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSG 88

Query: 163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVGGKDEH 221
            +   +   L P+ + Y+VNHAE +       T   L+  ++ + P+V   V +     H
Sbjct: 89  AVCHTINPRLFPEQIAYIVNHAE-DRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA-H 146

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKGAVLTH 278
           LP+        L+ Y  L   G        P   E+ A+ +CYTSGTTG PKGA+ +H
Sbjct: 147 LPA----GSTPLLCYETLV--GAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 65/355 (18%), Positives = 113/355 (31%), Gaps = 67/355 (18%)

Query: 228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG 287
               K         +                  + YT+GTTG PKG V +H  L+ +   
Sbjct: 125 VMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLA 184

Query: 288 FSLMVQFY--PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQGDNLKLM-DDLAVLK 343
            SL+        D+ +  +P+ H+         ++     V      +   + +      
Sbjct: 185 ASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 244

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
            T    VP ++  + A    +                                       
Sbjct: 245 VTFTAGVPTVWLAL-ADYLESTGHRLK--------------------------TL----- 272

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCI------I 452
                     R +  G++   P  +       G +V +GYG+TE                
Sbjct: 273 ---------RRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 321

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICV---RGPIVFQGYYK 509
            + ++   L    G P P   +++ D           P     +     +GP +  GYY 
Sbjct: 322 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPV-----PKDGKALGEVQLKGPWITGGYYG 376

Query: 510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           NE  TR  +  DG+  TGDI +W   G ++I DR K++ K   GE+++   +EN 
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENA 430

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 50/229 (21%), Positives = 75/229 (32%), Gaps = 53/229 (23%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           TL D        +PD      R  V   V G + +TY E+ AA   + +GLL  G+  G 
Sbjct: 16  TLGDLLAANAARHPD------RTAV---VDGPRRLTYRELDAAVDRLAAGLLALGIGPGD 66

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ + L N  E++I+  A      I V                  EI             
Sbjct: 67  RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR---------AHEIGH----------- 106

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
             F  +  +   I+                      Y  L  +         P    D+A
Sbjct: 107 --FARQSEAKAYIIA--------------DRFSGFDYAALARELLEE----LP----DVA 142

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               + GTTG PK    TH + + +    +      P  +Y++ LP AH
Sbjct: 143 LFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH 191

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 59.6 bits (145), Expect = 4e-09
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
           E ++VD  + N  +  +    GEI  R P +  GY+ +  +T E   G GW H+GD+G+ 
Sbjct: 351 ETRVVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAFRG-GWFHSGDLGVM 405

Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
              G + ++DRKK++ K   GE VA  ++E  
Sbjct: 406 DEEGYITVVDRKKDMIKTG-GENVASREVEEA 436

Length = 523

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           E  P   GEICV GP VF GYY N     +    DGW  TGD+G     G L I  R  +
Sbjct: 360 ELPPGETGEICVIGPAVFAGYYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASD 418

Query: 547 IFKLAQGEYVAPEKIE 562
           ++ ++ G  V P +IE
Sbjct: 419 MY-ISGGSNVYPREIE 433

Length = 528

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.2 bits (141), Expect = 9e-09
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISA--IDKGDNLSGHV----GS 467
           G S   P ++   +  +G +V+  +GMTE     T C +         +    +    G 
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGR 360

Query: 468 PNPACEIKLVDVPEMNYTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
                ++K+V          + P      G++ VRGP V   Y++ +         DGW 
Sbjct: 361 VIYGVDMKIVGD-----DGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV----DGWF 411

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            TGD+      G ++I DR K++ K + GE+++   IENV
Sbjct: 412 PTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 114 MTYGEVSAARKEIGSGL-LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD 170
           +TYG+       I   +  F   GL  G  + L  +NRPE L+   A          L+ 
Sbjct: 38  LTYGQ---LADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94

Query: 171 TLGPDAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
               D   YV+  A I  +   P   +   L+ ++ +PS+  ++ +G         P   
Sbjct: 95  LGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPD 145

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPK-PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
           GV L++       G   P P      P DIA + YT GTTG PKG + TH ++ +     
Sbjct: 146 GVDLLA--AAAKFG---PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ-- 198

Query: 289 SLMVQF-YPSDI-YMSYLPLAH 308
             + ++ +P+D  ++   PL+H
Sbjct: 199 IQLAEWEWPADPRFLMCTPLSH 220

Length = 524

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 1e-08
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 36/173 (20%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           +TY E++     +   L   G+  G  + L L   PE ++    +  A +AY    VPL 
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPL- 67

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
           D   P                         L+F+ E     +++     DE L  L    
Sbjct: 68  DPAYPAER----------------------LAFMLEDSGARVLLT----DESLAPLARAD 101

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
            + L+     +     +  P      +D+A + YTSG+TG PKG  + H  ++
Sbjct: 102 QLPLVILE-EELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           GEI +RG +V +GY KN     E     GW H+GD+G+  P G ++I DR K+I  ++ G
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAFAN-GWFHSGDLGVKHPDGYIEIKDRSKDII-ISGG 460

Query: 554 EYVAPEKIENV 564
           E ++  ++ENV
Sbjct: 461 ENISSLEVENV 471

Length = 567

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV-PLYDTLG 173
           TY ++     ++   L   G++ G R+         W    H  + Y  + +  +  T+ 
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATI-----AWNTWRHLEAWYGIMGIGAICHTVN 95

Query: 174 P----DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
           P    + + +++NHAE   +      +  L     ++PSV   VV+         +P T+
Sbjct: 96  PRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH----MPQTT 151

Query: 230 GVKLISYLQL--QSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKGAVLTHGN-----L 281
               ++Y +   ++ G  + + F     E+ A  +CYTSGTTG PKG + +H +     L
Sbjct: 152 LKNAVAYEEWIAEADGDFAWKTF----DENTAAGMCYTSGTTGDPKGVLYSHRSNVLHAL 207

Query: 282 ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
           ++N            +D  +  +PL H
Sbjct: 208 MANNGDALGTSA---ADTMLPVVPLFH 231

Length = 542

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 443 YGMTETSCIISAIDKGDNLSG--HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG 500
           YGMTET+  I+ +   D L+G    G   P  +I +              +  G I ++ 
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQTGNITIQA 308

Query: 501 PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560
             +  GYY        ++D  G   T D+G     G L I+ R      +  GE V P +
Sbjct: 309 QSLALGYYPQ------ILDSQGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAE 361

Query: 561 IENVYAKCKFVLQCFIYG--DS-FNSCLVAIV-----AVDPDVLKDWAASQGIKF 607
           +E        V    + G  D  +   + AI      ++  + LK     Q   F
Sbjct: 362 VEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSPF 416

Length = 452

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TYGE+ A    +  GL   GL++G  + + L N PE+  V  A         P+   L 
Sbjct: 12  VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS--VHLIVVVGGKDEHLPSLPSTSGV 231
              + Y+V+ +  + +       +T     +E+P+    L+VV G               
Sbjct: 72  AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRS-------- 123

Query: 232 KLISYLQLQSQGCSSPQPFCPPKPEDI-ATICYTSGTTGTPKGAV--LTHG----NLISN 284
               Y +  +      QP  P   E   A + Y+SGTTG PKG    L            
Sbjct: 124 ----YEEALAA-----QPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMM 174

Query: 285 VAGFSLMVQFYPSDIYMSYLPLAH 308
           +A     +   P  +Y+S  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 12/97 (12%)

Query: 225 LPSTSGVKLISYLQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           +P+    + + + Q   QG   S +P  P   +DIA + YT GTTG  KGA+LTHGNL++
Sbjct: 176 VPAYHLPQAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVA 234

Query: 284 NVAG-FSLMVQFYP---------SDIYMSYLPLAHIY 310
           N+    + + Q  P          ++ ++ LPL HIY
Sbjct: 235 NMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271

Length = 562

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 6/59 (10%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYMSYLPLAH 308
           +P+DIA + YTSG+T  PKG  ++HGNL++N      GF + +   P D+ +S+LPL H
Sbjct: 164 QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLN--PDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 418 SGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAI----------DKGDNLSGH- 464
           S  +P+   V++  +       +++  YG TE +  IS+I             DN +G  
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATE-ALPISSIESREILFATRAATDNGAGIC 353

Query: 465 VGSPNPACEIKLVDVPE--MNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTRE--V 517
           VG P    E++++ + +  +    +         GEI V GP+V + YY     TR   +
Sbjct: 354 VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKI 413

Query: 518 IDGDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
            DG G  W   GD+G     GRL    RK +  + A G  
Sbjct: 414 PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL 453

Length = 552

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 105 DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI 164
           DG+V  +   TY E++     + SGL   GL KG R+G+Y+   PE ++   A +    I
Sbjct: 2   DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFC 191
           +VP++   GPDAV   +  AE + +  
Sbjct: 59  AVPIFSGFGPDAVATRLQDAEAKVLIT 85

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 62/279 (22%), Positives = 95/279 (34%), Gaps = 59/279 (21%)

Query: 416 MGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK 475
            G+  +P   D+  F +  FGC V++G+G TE    I+     D   G +G   P   + 
Sbjct: 273 YGNEGAP--GDIARFARR-FGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VA 325

Query: 476 LVDVPEMNYTSEDQPHPRGEIC----------------VRGPIVFQGYYKNEVQTREVID 519
           +VD P+          P  E                    GP  F+GYY +     E + 
Sbjct: 326 IVD-PDTG-----TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR 379

Query: 520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
             G   +GD+      G      R  +  ++  GE +    IE +  +     +  +Y  
Sbjct: 380 -GGVYWSGDLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYA- 436

Query: 580 SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF 639
                 V    V   V+     + G KF        DP A A  LA    +G +      
Sbjct: 437 ------VPDPVVGDQVMAALVLAPGAKF--------DPDAFAEFLAAQPDLGPKQWPS-- 480

Query: 640 EYAKAVTLMPEPFSVENGLLTPTFKI-KRPQAKERFAKA 677
            Y +    +P          T TFK+ KR  + E    A
Sbjct: 481 -YVRVCAELPR---------TATFKVLKRQLSAEGVDCA 509

Length = 529

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           ++Y E++     +   L+  G+   V +G+ +    E ++    V  A  AY    VPL 
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                D + Y+++ + +  +      L              L V  G     L SL    
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLA------------QLPVPAG-----LRSLC--- 633

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
               +        G S   P     P+++A + YTSG+TG PKG  ++HG L + V   +
Sbjct: 634 ----LDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689

Query: 290 LMVQFYPSDIYMSYLPLA 307
             +Q    D  +     A
Sbjct: 690 ERLQLAADDSMLMVSTFA 707

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 110  GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WLIVDHACSAYSYIS 165
            G + +TYGE++     +   L+  G+   V +G+ +    E     L +  A  AY    
Sbjct: 1596 GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY---- 1651

Query: 166  VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL 225
            VPL      + + Y++  + IE           LL   S +                  L
Sbjct: 1652 VPLDPEYPRERLAYMIEDSGIE-----------LLLTQSHL---------------QARL 1685

Query: 226  PSTSGVKLISYLQLQS--QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
            P   G++ +   Q     +G S   P     P+++A + YTSG+TG PKGA   HG L++
Sbjct: 1686 PLPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745

Query: 284  NVAGFSLMVQFYPSDIYMSYLPLA 307
             +       Q   +D+ + +   A
Sbjct: 1746 RLCATQEAYQLSAADVVLQFTSFA 1769

Length = 3956

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 249 PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPLA 307
               P P+DIA + Y+SG+T  P+G ++TH  L++N+   S   ++  P D  +S+LP  
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228

Query: 308 H 308
           H
Sbjct: 229 H 229

Length = 579

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.1 bits (131), Expect = 2e-07
 Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 54/218 (24%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY- 169
           Y  +++ E+ A    I  GL   G+ +G+R    L+  P               S+  + 
Sbjct: 39  YDELSFAELDARSDAIAHGLNAAGIGRGMRA--VLMVTP---------------SLEFFA 81

Query: 170 ---------------DT-LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHL 211
                          D  +G   +K  +  A+ +A   IP     L   +     PSV  
Sbjct: 82  LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP--KAHLARRLFGWGKPSVRR 139

Query: 212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTP 271
           +V VGG+           G  L + L+  +    +P P     P+D+A I +TSG+TGTP
Sbjct: 140 LVTVGGR-------LLWGGTTLATLLRDGAA---APFPMADLAPDDMAAILFTSGSTGTP 189

Query: 272 KGAVLTHGNLISNVAGFSLMVQFY---PSDIYMSYLPL 306
           KG V THG      A    + + Y   P +I +   PL
Sbjct: 190 KGVVYTHGMF---EAQIEALREDYGIEPGEIDLPTFPL 224

Length = 552

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 26/190 (13%)

Query: 431 LKVCF-GCQVMEGYGMTETS--CIISAIDKGDNLSGHV--GSPNPACEIKLVDVPEMNYT 485
           L+    G +++   G TE S   I   ID  D     +  G P P  +  ++D       
Sbjct: 263 LRALAPGARLVSLGGATEASIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-----ED 317

Query: 486 SEDQPH--PRGEICVRGPIVFQGYYKNEVQTRE--VIDGDG--WLHTGDIGLWLPGGRLK 539
             D P   P GE+ + G  V  GY+ +   T E  +    G     TGD+G + P G ++
Sbjct: 318 GRDCPDWVP-GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIE 376

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ--CFIYGDSFNSCLVAIV------AV 591
            + R  +  K+ +G  V   +IE   A+   V +    + GD     L A V      AV
Sbjct: 377 FLGRADHQVKI-RGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAV 435

Query: 592 DPDVLKDWAA 601
           D  VL+   A
Sbjct: 436 DAAVLRAALA 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 37/189 (19%)

Query: 443 YGMTETSCIISAI-------DKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE 495
           YG TE +  +++I       D+   L   +G   P   + ++D  E     + +    GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346

Query: 496 ICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIG-----LWLPGGRLKIIDRKKNI 547
           I + GP V +GY  N  +T E     DG    HTGD G     L    GR   ID     
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGR---ID----- 398

Query: 548 F--KLAQGEYVAPEKIENVYAKCKFVLQCF---IYGDSFNSCLVA-IVAVDPDVLKDWAA 601
           F  KL  G  +  E+IE    +  +V          D     L+A +V  + D  +++  
Sbjct: 399 FQIKLN-GYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFEL 457

Query: 602 SQGIKFEDL 610
           ++ IK ++L
Sbjct: 458 TKAIK-KEL 465

Length = 503

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 443 YGMTETSCIISAIDKGDNLSGHV---GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICV 498
           YG +E   +++     D +S  +   G P +P   ++  D  +     + +    GEI +
Sbjct: 326 YGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES---GEIEI 382

Query: 499 RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP 558
           R P + +GY  N   T   +  DG+  TGD+G     G+     R  +  +L  G  V P
Sbjct: 383 RAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLG-GFLVNP 441

Query: 559 EKIENVYAKCKFVLQCFIYG 578
            +IE+       V    + G
Sbjct: 442 AEIEHALEALPGVAAAQVVG 461

Length = 540

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPN 469
             +R + S   PL+P+V+ + +   G  + + +  TET  I+ A   G  +  G +G P 
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P  E  +++      T    P   GE+ ++   P +F+GY  NE +       DGW  TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           D+      G    + R  ++ K A G  V P ++E+ 
Sbjct: 326 DLAYRDEDGYFWFVGRADDVIKTA-GHLVGPFEVESA 361

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNV----AGFSLMVQFYPSDIYMSYLPLAHI 309
            PED+A + YT GTTG  KGA+LTH N+++N+    A +  ++     ++ ++ LPL HI
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH-PGKELVVTALPLYHI 262

Query: 310 Y 310
           +
Sbjct: 263 F 263

Length = 560

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
           RV F G+ ASP   D+ +F +  FGCQV +GYG +E + I+          G +G   P 
Sbjct: 268 RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPG 321

Query: 472 CEIKLVDVPEMNYTSEDQPHPR--------GEICVR-GPIVFQGYYKNEVQTREVIDGDG 522
             I   +       +    H          GE+    G   F+GYY N   T E +   G
Sbjct: 322 VAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HG 380

Query: 523 WLHTGDIG 530
              +GD+ 
Sbjct: 381 MYWSGDLA 388

Length = 540

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF-YPSDIYMSYLP 305
                PP     A +  T+G+TGTP+ A+L+ G ++SN+ G +  V     +D+  S+LP
Sbjct: 143 SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLP 202

Query: 306 LAH 308
           L H
Sbjct: 203 LYH 205

Length = 525

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 46/217 (21%)

Query: 110 GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY 169
              W T+ E++    ++ +     G + G  + L++ NR E++ +    +     +  + 
Sbjct: 1   DRHW-TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN 59

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  +++ + +  ++ +A   I   L+ LL+  S  P                  PS  
Sbjct: 60  SNLRLESLLHCITVSKAKA--LIFNLLDPLLTQSSTEP------------------PSQD 99

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
            V                         D     YTSGTTG PK AV+ H       AG  
Sbjct: 100 DVNF----------------------RDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAY 137

Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG 326
                 P D+    LPL   Y  A  I+ V   +  G
Sbjct: 138 YAFGMRPEDVVYDCLPL---YHSAGGIMGVGQALLHG 171

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 114  MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WLIVDHACSAYSYISVPLY 169
            +TY E++     +   L+  G+   V +G+ +    E     L V  A  AY    VPL 
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAY----VPL- 4631

Query: 170  DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                           + E     P+     L+++ E     L++    +   L  LP   
Sbjct: 4632 ---------------DPE----YPRER---LAYMMEDSGAALLLT---QSHLLQRLPIPD 4666

Query: 230  GVKLISYLQLQS-QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G+  ++  + +  +G  +  P     P+++A + YTSG+TG PKG  ++HG+L++++   
Sbjct: 4667 GLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHAT 4726

Query: 289  SLMVQFYPSDIYMSYLPLA 307
                +  P D  + ++  +
Sbjct: 4727 GERYELTPDDRVLQFMSFS 4745

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 23/81 (28%), Positives = 36/81 (44%)

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G    S L                +P+ +AT+  TSG+TG PK AV T    +++  G 
Sbjct: 108 EGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGV 167

Query: 289 SLMVQFYPSDIYMSYLPLAHI 309
             ++ F   D ++  LPL H+
Sbjct: 168 LSLMPFTAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 49.9 bits (120), Expect = 4e-06
 Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 69/265 (26%)

Query: 64  SPLTLVDR----FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           +PL+ ++R    +PD P +       I+           G R R           T+ E 
Sbjct: 19  TPLSFLERAAEVYPDRPAV-------IH-----------GDRRR-----------TWAET 49

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP--------LYDT 171
            A  + + S L   G+ +G  + + L N P  +             VP        L   
Sbjct: 50  YARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFG--------VPMAGAVLNTLNTR 101

Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231
           L   ++ +++ H E + +    +        ++ +P    +V+    D   P  P    +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVI----DVDDPEYPGGRFI 157

Query: 232 KLISYLQLQSQGCSSPQPFCPPKPED----IATICYTSGTTGTPKGAVLTH-G---NLIS 283
             + Y    + G   P  F    P D    IA + YTSGTTG PKG V  H G   N +S
Sbjct: 158 GALDYEAFLASG--DP-DFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGAYLNALS 213

Query: 284 NVAGFSLMVQFYPSDIYMSYLPLAH 308
           N+  + +        +Y+  LP+ H
Sbjct: 214 NILAWGMP----KHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 24/202 (11%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC--SAYSYISVPLYDTL 172
           TY E+      +       GL++G  + +++ N   +L V  A   S   Y  V  +  L
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
            P    Y+V+ +   A+      L+   + + + P V   +V+ G  E    L    G  
Sbjct: 84  TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE----LEGFVGY- 138

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKG--AVLTHGNLISNVAGFS 289
                        +  P  P   E + T + Y+SGTTG PKG    L      + +   +
Sbjct: 139 ---------AEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTA 189

Query: 290 L---MVQFYPSDIYMSYLPLAH 308
               +  F    +Y+S  PL H
Sbjct: 190 FLQRLWGFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.7 bits (117), Expect = 7e-06
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E++     + +GLL  G++ G R+ L L N PE+L    A +    ++VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 175 DAVKYVVNHAEIEAIFCIPQTL 196
           + + ++++H+    I      +
Sbjct: 65  EELAHILDHSGARLIVVDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.7 bits (117), Expect = 8e-06
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 52/203 (25%)

Query: 89  VENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYL 145
            +  PD   Y YLG +            +TYG++      + + +    L     I ++ 
Sbjct: 12  AQTQPDFPAYDYLGEK------------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFG 59

Query: 146 INRPEWLIVDHAC--SAYSYISVPLYDTLGP-DAVKYVVNHAEIEAIFCIPQTLNTLLSF 202
              PE L        + ++YI V   D   P + ++ ++  A+   I             
Sbjct: 60  HMSPEMLATFLGAVKAGHAYIPV---DVSSPAERIEMIIEVAKPSLIIAT---------- 106

Query: 203 ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC--SSPQPFCPPKPEDIAT 260
             E+P                      G+ +I+  +L+      +        K +D   
Sbjct: 107 -EELP------------------LEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYY 147

Query: 261 ICYTSGTTGTPKGAVLTHGNLIS 283
           I +TSGTTG PKG  ++H NL+S
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVS 170

Length = 503

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ E+        + L   G+ +G R+ + L   PE   V   C     + +P    LGP
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFIS 204
             ++Y +  A   AI         LL F S
Sbjct: 62  KDIRYRLERAGARAIVTSADDP-ALLYFTS 90

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 202 FISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATI 261
            +++ P++  ++V G  +                   L         P  P    ++A  
Sbjct: 147 LVAKHPTLRHVIVAGEAEHPSVLE-----------AALCHPA-GLFTPAPPADAGEVAFF 194

Query: 262 CYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
             + GTTGTPK    TH +   +V   + +  F    +Y+  LP AH +
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243

Length = 542

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 68/357 (19%), Positives = 118/357 (33%), Gaps = 73/357 (20%)

Query: 220  EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
             HL  LP   GV+++  L    +  +   P     PE++A + YTSG+TG PKG  + H 
Sbjct: 3162 SHL-RLPLAQGVQVLD-LDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHS 3219

Query: 280  NLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDL 339
             L +++                                                 L    
Sbjct: 3220 ALSNHLCW-----------------------------------------MQQAYGLGVGD 3238

Query: 340  AVLKPTIFP---SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
             VL+ T F     V  L+  + +G    +      R+        + +   V    PS M
Sbjct: 3239 RVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPS-M 3297

Query: 397  WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID 456
              +    +        ++ +  G   L  D+    +V  G  +   YG TE +  ++   
Sbjct: 3298 L-QAFLEEEDAHRCTSLKRIVCGGEALPADLQQ--QVFAGLPLYNLYGPTEATITVTHWQ 3354

Query: 457  KGDNLSGH--VGSPNPACEIKLVDVPEMNYTSEDQPHPRG---EICVRGPIVFQGYYKNE 511
              +       +G P       ++D          +P P G   E+ + G  + +GY+   
Sbjct: 3355 CVEEGKDAVPIGRPIANRACYILD-------GSLEPVPVGALGELYLGGEGLARGYHNRP 3407

Query: 512  VQTRE------VIDGDGWLHTGDIGLWLPGGRLKIIDR-----KKNIFKLAQGEYVA 557
              T E       + G+    TGD+  +   G ++ I R     K   F++  GE  A
Sbjct: 3408 GLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEA 3464

Length = 5163

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 441 EGYGMTETSCIISAIDKGDNLSGH-VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR 499
           E YG +E S + + +D+      + VG P    ++++ +        E Q    G + V+
Sbjct: 284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAG----EEVQKGEIGTVYVK 339

Query: 500 GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPE 559
            P  F GY          ++ DGW+   D+G     G + I+ R+KN+  L  G  + PE
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGINIFPE 397

Query: 560 KIENVYAKCKFVLQCFIYG--DSF-NSCLVAIV 589
           +IE+V  +   V +  + G  DS+     VAI+
Sbjct: 398 EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAII 430

Length = 487

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 28/199 (14%)

Query: 113 WMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTL 172
           W  +   SAAR       L     +   +G+ L N PE+ ++  A +    + V L  T 
Sbjct: 31  WREHIRGSAARAAALRARL--DPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTR 88

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
              A+   + HA+ + +             ++E     L+  +      +        V 
Sbjct: 89  RGAALARDIAHADCQLV-------------LTESAHAELLDGLDPGVRVI-------NVD 128

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
             ++    +    +  PF    P+D+  + +TSGT+G PK    TH  + S  AG  L  
Sbjct: 129 SPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVAS--AGVMLAQ 186

Query: 293 QF--YPSDI-YMSYLPLAH 308
           +F   P D+ Y+S +PL H
Sbjct: 187 RFGLGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
              P+D+A + +TSG+TG PKG ++TH   +
Sbjct: 122 RVDPDDLAYVIFTSGSTGEPKGVMITHRAAV 152

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 31/182 (17%)

Query: 411 GRVRFMGSGASPLSPDVMD-FLKVC--FGCQ---VMEGYGMTETSCIISA---------- 454
           G +R   +G  P+  D  + F      FG         YG+ E++C ++           
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 455 ---IDKGDNLSGH--VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK 509
               D G     H  +G+P P  E+++         +       GEI +RG  +  GY  
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDG---AAGVAGREIGEIEIRGASMMSGYLG 388

Query: 510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK 569
                   ID D W  TGD+G  + GG L +  R K +  +A G  + P +IE V A+ +
Sbjct: 389 QAP-----IDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVA-GRNIFPTEIERVAAQVR 441

Query: 570 FV 571
            V
Sbjct: 442 GV 443

Length = 525

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
            + LP       +  + Y    +       P    +P   A I +TSG+TG PKG ++  
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620

Length = 1296

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 47/196 (23%)

Query: 92  YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW 151
              Y+Y G              +TY ++      + + +    L K   I +Y    P  
Sbjct: 16  TIAYRYQGQE------------LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHM 63

Query: 152 LIVDHAC--SAYSYISVPLYDTLGP-DAVKYVVNHAEIEAIFCI-PQTLNTLLSFISEIP 207
           L+       S ++YI V   DT  P + ++ ++  A  E +      +++ + + I  + 
Sbjct: 64  LVAFLGSIKSGHAYIPV---DTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLS 120

Query: 208 SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGT 267
           ++        +    P             +                K +D   I YTSG+
Sbjct: 121 ALEQA-----ETSGGP-------------VSFDH----------AVKGDDNYYIIYTSGS 152

Query: 268 TGTPKGAVLTHGNLIS 283
           TG PKG  ++H NL+S
Sbjct: 153 TGNPKGVQISHDNLVS 168

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 25/132 (18%)

Query: 413 VRFMGSGAS-PLSPDVMDFLKVCFGCQVMEGYGMTETSCI----------ISAIDKGDNL 461
           +R +G G S  ++ DV  F++   G +  + YG++ET C           I  I+     
Sbjct: 288 LRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIE----- 340

Query: 462 SGHVGSPNPACEIKLVDV----PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV 517
           +G VG P P  ++ L       P             G + ++ P    GY+ N  +T EV
Sbjct: 341 AGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASF--GTLWIKSPANMLGYWNNPERTAEV 398

Query: 518 IDGDGWLHTGDI 529
           +  DGW++TGD+
Sbjct: 399 L-IDGWVNTGDL 409

Length = 540

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 416 MGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLSGHVGSP--NPA 471
           + SG +  SP V +  L++     + +  G +ET       + KG   + H G P     
Sbjct: 301 IASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG---AVHTGGPRFTIG 357

Query: 472 CEIKLVDVPEMNYTSEDQP--HPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHT 526
               ++D       +  +P     G I  RG I   GYYK+  +T E    IDG  +   
Sbjct: 358 PRTVVLDED----GNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRYAIP 412

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNS 583
           GD       G + ++ R         GE V PE++E        V    + G   + +  
Sbjct: 413 GDRARVEADGTITLLGRGSVCINTG-GEKVFPEEVEEALKAHPDVADALVVGVPDERWGQ 471

Query: 584 CLVAIVAVDPDV 595
            +VA+V +    
Sbjct: 472 EVVAVVQLREGA 483

Length = 533

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 50/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%)

Query: 412 RVRFM-GSGASPLSPDVMDFLKVCFGCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSPN 469
           +VR   G+G   L PD+ +  +  F    + E Y  TE     +  + G   +G +G   
Sbjct: 203 KVRVAYGNG---LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPFTAGAIGFSG 259

Query: 470 PACEIKLVD--VPEMNYTSEDQP--HPRGEICVRGPI----------------VFQGYYK 509
                 L +           D P   P+   CVR P+                +FQGY K
Sbjct: 260 LIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLK 319

Query: 510 NEVQT-----REVID-GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           NE  T     R+V   GD W  TGD+      GR   +DR  + F+  + E V+  ++ +
Sbjct: 320 NEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRW-KSENVSTGEVAD 378

Query: 564 VYAKCKFVLQCFIYG 578
           V      V +  +YG
Sbjct: 379 VLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY- 295
           L L S   S  +P   P     A + YTSG+T TP G +++H N+I+N     LM  ++ 
Sbjct: 144 LDLDSPRGSDARPRDLP---STAYLQYTSGSTRTPAGVMVSHRNVIANFE--QLMSDYFG 198

Query: 296 ------PSDIYM-SYLPLAH 308
                 P D  + S+LP  H
Sbjct: 199 DTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
            +D A I YTSGTTG PKG V TH       A
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 38/179 (21%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           + Y E++     +   L+  G+   V +G+ +    E ++    +  A  AY    VPL 
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY----VPLD 592

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-PSLPST 228
                + + Y++  + ++           LLS                   HL   LP  
Sbjct: 593 PEYPAERLAYMLEDSGVQ----------LLLS-----------------QSHLGRKLPLA 625

Query: 229 SGVKLISYLQ--LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
           +GV+++   +     +G S   P     PE++A + YTSG+TG PKGA   H  L + +
Sbjct: 626 AGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIY 300
           P+C P+P   ED   I YTSG+TG PKG V T G  +   A     V    P D+Y
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVY 270

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.0 bits (110), Expect = 5e-05
 Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 29/200 (14%)

Query: 423 LSPD-VMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHV--GSPNPACEIKLV 477
           LSP  V   L  C G +++ GYG TE +   +   I + D  +  +  G P P   + ++
Sbjct: 252 LSPAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIPIGRPIPNTTVYIL 311

Query: 478 DVPEMNYTSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREV------IDGDGWLHTGD 528
           D        E QP P    GE+ V G  +  GY      T E         G+    TGD
Sbjct: 312 D-------EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD 364

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSC---L 585
           +  W P G ++ + R     K+ +G  +   +IE    +   V +  +      +    L
Sbjct: 365 LARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRL 423

Query: 586 VAIV----AVDPDVLKDWAA 601
           VA V    A+D   L+   A
Sbjct: 424 VAYVVARGALDAAELRAHLA 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 35/198 (17%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++  E+ A    + + L   G+++G R+ ++L N  EW+++  AC+      +       
Sbjct: 36  LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI------- 88

Query: 174 PDAVKYVVNHAEIEAIFCIPQT-------------LNTLLSFI--SEIPSVHLIVVVGGK 218
             AV       E+  I    +                 +L+ +    +P +  I VV   
Sbjct: 89  --AVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDA 146

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICY-TSGTTGTPK----- 272
            +  P+    + V+L +                     D   + + TSGTT  PK     
Sbjct: 147 ADATPAPAPGARVQLFA----LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHR 202

Query: 273 -GAVLTHGNLISNVAGFS 289
              +L H   I+   G+ 
Sbjct: 203 QATLLRHARAIARAYGYD 220

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 9/157 (5%)

Query: 412 RVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP 470
            +R + S  +  SP+V    L++     +++  G +ET    S++ +    S   G    
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGASA-TGKFEL 194

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTG 527
             +  ++D  + +          G I   G +   GYYK+  +T +    IDG  +   G
Sbjct: 195 GPDTVVLD-EDGSEVPPGSGEV-GWIARGGRVP-LGYYKDPEKTAKTFREIDGVRYAVPG 251

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           D       G + ++ R         GE V PE++E  
Sbjct: 252 DFARVEADGTITLLGRGSVCINTG-GEKVFPEEVEEA 287

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 26/221 (11%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSG---HVGSPN 469
           +R + S    L P +       +G  +  GYG TE    I A+    +L      VG P 
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IGALATPADLRDAPETVGKPV 351

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDI 529
             C ++++D           P   G I V G +    Y   +   + V+DG     TGD+
Sbjct: 352 AGCPVRILD----RNNRPVGPRVTGRIFVGGELAGTRY--TDGGGKAVVDG--MTSTGDM 403

Query: 530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLV 586
           G     GRL I+ R+ ++  ++ GE V P  +EN  A    V    + G   + F   L 
Sbjct: 404 GYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLA 462

Query: 587 AIVA------VDPDVLKDWAASQGIKFE---DLEQLCNDPR 618
           A V       VD   L+D+   +  +FE   D+  + + PR
Sbjct: 463 AFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPR 503

Length = 516

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           P  +D+A +  TSGTTGTPKGA+LT   L +
Sbjct: 32  PIDDDVALVVATSGTTGTPKGAMLTAAALTA 62

Length = 358

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           PED A + +TSGTTG PKG +  H  ++++ A    ++   P D+Y
Sbjct: 88  PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 63/195 (32%)

Query: 115 TYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           TY E           L     +Q G  + +   N  E++ +  A  +             
Sbjct: 7   TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWS------------- 53

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
                          I  +P  +N  LS     P +H +                SG K 
Sbjct: 54  ---------------IGAVPAFINYNLS---GDPLIHCL--------------KISGAKF 81

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           +                    P+D A + YTSGTTG PKG  ++    +      S  + 
Sbjct: 82  VIV-----------------DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLN 124

Query: 294 FYPSDIYMSYLPLAH 308
               D   + +PL H
Sbjct: 125 LQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAV-LTHGNLISNVAGFSLMVQFYPSDIY 300
            +C P+P   ED   I YTSG+TG PKG +  T G L+        +      DI+
Sbjct: 226 AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIF 281

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI--SVPLYDT 171
           +++ E+ +    + + L   G++ G R+  YL N PE +I   A ++   I  S      
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSC----- 141

Query: 172 LGPD-AVKYVVNH-AEIEA--IFCIP---------QTLNTLLSFISEIPSVHLIVVVGGK 218
             PD  V+ V++   +IE   +F +               +   +  +PS+  +VVV   
Sbjct: 142 -SPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYL 200

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
                          + +     +  ++P  F     +    I Y+SGTTG PK  V   
Sbjct: 201 SSDAQPAALKFSALTLLWSLAGDR--AAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGA 258

Query: 279 GN-LISNVAGFSLMVQFYPSDIYMSY 303
           G  L+ ++    L     P D    Y
Sbjct: 259 GGTLLQHLKEHGLHCDLRPGDRLFYY 284

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 77/351 (21%), Positives = 128/351 (36%), Gaps = 92/351 (26%)

Query: 261 ICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---------------VQFYPSDI------ 299
           I YTSGTTG PKG V   G       G+++                V +  SD+      
Sbjct: 225 ILYTSGTTGKPKGVVRDTG-------GYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGH 277

Query: 300 -YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
            Y+ Y PL H             G     Y+G            KP   P     Y R+ 
Sbjct: 278 SYIVYGPLLH-------------GATTVLYEG------------KPVGTPD-AGAYWRVI 311

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAI--VSGQTPSKMWDRLVFNKIRERLGGRVRFM 416
                 V A       LFTA       AI  +  Q P   +       I++     +R +
Sbjct: 312 E--EYGVNA-------LFTAP-----TAIRAIRKQDPDGEY-------IKKYDLSSLRAL 350

Query: 417 GSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPN-PAC-- 472
                 L    +++++   G  V++ +  TET   I+A   G + L    GSP  P    
Sbjct: 351 FLAGERLDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGY 410

Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPI---VFQGYYKNEVQTREVI--DGDGWLHTG 527
           +++++D        E  P   G I ++ P+        + ++ + +++      G+  TG
Sbjct: 411 DVQVLD-ETGE---ELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTG 466

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           D G     G L ++ R  ++  +A G  ++  ++E    K   V +C + G
Sbjct: 467 DSGYKDEDGYLFVMGRTDDVINVA-GHRLSTGEMEESVLKHPDVAECAVVG 516

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN-EVQTREVIDGDG-- 522
           G   P   + +VD   +    +++    GEI   GP +  GY++N E   +  ++ DG  
Sbjct: 373 GRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKTFVEHDGRT 429

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ 573
           WL TGD+G +L  G L +  R K++  + +G  + P+ IE    +   V++
Sbjct: 430 WLRTGDLG-FLRDGELFVTGRLKDML-IVRGHNLYPQDIEKTVEREVEVVR 478

Length = 4334

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           P+D+A + YTSG+TG PKG  + H N  +
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 255  PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
             E++A + YTSG+TG PKG  ++HG L+++        +  P+D  + ++  +
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFS 2197

Length = 5163

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 42.7 bits (100), Expect = 6e-04
 Identities = 86/430 (20%), Positives = 154/430 (35%), Gaps = 92/430 (21%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +T+G++      +G  L   GL  G R+ L L + P+ + +  AC A             
Sbjct: 31  VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG----------- 79

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGG-KDEHLPSLPSTSGVK 232
                       + A    P+      +  +      L+V     +D   PS       +
Sbjct: 80  ------------VMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R 120

Query: 233 LISYLQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL- 290
           +    +L S+    +P  + P   + +A   YTSGTTG PK A+  H + ++ V      
Sbjct: 121 VAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRK 180

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDN-LKLMDDLAVLKPTIF-P 348
            ++  P D  +    +   Y   N   SV++ +A G     N   +  + A +    F P
Sbjct: 181 ALRLTPEDTGLCSARMYFAYGLGN---SVWFPLATGGSAVINSAPVTPEAAAILSARFGP 237

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
           SV       +A + ++              ++ S +  + +G+             + ER
Sbjct: 238 SVLYGVPNFFARVIDSCSPD----------SFRSLRCVVSAGEALEL--------GLAER 279

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSP 468
           L   + F G                  G  +++G G TE      +    +   G +G  
Sbjct: 280 L---MEFFG------------------GIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRV 318

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN-----------EVQTREV 517
            P  EI++V  P+    +   P   G++ VRGP + +GY+             + + R  
Sbjct: 319 LPPYEIRVV-APD---GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVC 374

Query: 518 IDGDGWLHTG 527
           ID DGW+   
Sbjct: 375 IDSDGWVTYR 384

Length = 705

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 263 YTSGTTGTPKGAVLTHGNL 281
           +TSGTTG PK AVLTHG +
Sbjct: 170 FTSGTTGRPKAAVLTHGQM 188

Length = 528

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               + IA + YTSG+T  P G  +TH NL +NV      ++    D  +S+LP  H
Sbjct: 176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFH 232

Length = 631

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.8 bits (101), Expect = 8e-04
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 222  LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            L  LP+ +G   ++  +L   G S   P      E++A + YTSG+TG PKG  + HG L
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262

Length = 3956

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+        + L   G+  G R+ L L + PE +    AC     ++V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 175 DAVKYVVNHAE 185
             ++++++ + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 26/86 (30%), Positives = 36/86 (41%)

Query: 222  LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            L  LP   GV  I+   L      S  P      +++A + YTSG+TG PKG   TH  L
Sbjct: 1239 LERLPQAEGVSAIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAAL 1298

Query: 282  ISNVAGFSLMVQFYPSDIYMSYLPLA 307
               +           SD+ M   P++
Sbjct: 1299 AERLQWMQATYALDDSDVLMQKAPIS 1324

Length = 4334

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 48/207 (23%), Positives = 72/207 (34%), Gaps = 31/207 (14%)

Query: 115 TYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE----WLIVDH-----ACSAYSYI 164
           TY EV     ++   LL H GL+ G  + L L N P     WL +       A    +  
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIR 64

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS 224
           S  L         + +V   E+         L  +   +  + ++ + V           
Sbjct: 65  SGSLLHCFRCCGARVLVADPEL---------LEAVEEILPALRAMGVRVFYLSHTSP--- 112

Query: 225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATIC---YTSGTTGTPKGAVLTHGNL 281
                GV  IS L         P P        I +     YTSGTTG PK A ++H  +
Sbjct: 113 ---PEGV--ISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRV 167

Query: 282 ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
           +   +G   +      D+  + LPL H
Sbjct: 168 LQ-CSGMLSLCGVTADDVVYTTLPLYH 193

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 17/79 (21%), Positives = 37/79 (46%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           + +TYGE+ A    +   LL  GL  G R+ +      E++++  A      ++VPL  +
Sbjct: 10  RSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPS 69

Query: 172 LGPDAVKYVVNHAEIEAIF 190
                + Y+++ ++   + 
Sbjct: 70  YPAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGSPNPA 471
           +R + S   PL+P+V+ +    FG  + + + MTET  I I+     D   G +G P P 
Sbjct: 325 LRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E  +VD    +  +E  P+  G + ++   P + +G + N  +      G  W  +GD
Sbjct: 385 IEAAIVD----DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAG-DWYVSGD 438

Length = 570

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 39/189 (20%)

Query: 443 YGMTETSCIISA-------IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP--- 492
           YG TE +  +++       +D+   L   +G   P   + ++D        E +P P   
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIG-----LWLPGGRLKIIDRK 544
           +GEI + GP V +GY  N  +T E     +G     TGD G          GR   +D +
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGR---LDFQ 398

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY-----GDSFNSCLVAIVAVDPDVLKDW 599
               KL  G  +  E IE    +  ++    +             + AIV    D  K++
Sbjct: 399 ---IKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEF 454

Query: 600 AASQGIKFE 608
             ++ IK E
Sbjct: 455 QLTKAIKKE 463

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 51/239 (21%), Positives = 78/239 (32%), Gaps = 66/239 (27%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
           E L  LP T+   L                F  PK E+I  I  +SGTTG P     T  
Sbjct: 63  EDLAKLPFTTKDDLRENYPFG--------DFAVPK-EEIVRIHASSGTTGKPTVFGYTAK 113

Query: 280 NLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV-----AVGFYQG-DNL 333
           +           ++ +   +  S         R    V   YG       +G + G + +
Sbjct: 114 D-----------IERWAELLARSLYS---AGVRKGDKVQNAYGYGLFTGGLGLHYGAERI 159

Query: 334 KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393
                      T+ P        I  G T          E+      + K   I +  TP
Sbjct: 160 GA---------TVIP--------ISGGNT----------ERQLELMKDFKPTVIAA--TP 190

Query: 394 SKMWDRLVFNKIRERLGGR-----VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE 447
           S +   L   +  E  G       ++    GA P S ++   ++  FGC+  + YG+TE
Sbjct: 191 SYL---LYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246

Length = 438

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY-MSYLPLAH 308
               +D++ + YTSG+T  P G  +TH  + +N+    L +     + + +S+LPL H
Sbjct: 189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYH 246

Length = 612

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 251 CPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
           C P+P   ED   I YTSG+TG PKG + T G
Sbjct: 237 CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTG 268

Length = 637

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	698
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.98
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
PRK09188	365	serine/threonine protein kinase; Provisional	99.8
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.8
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.72
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.88
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.86
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.51
PLN02249	597	indole-3-acetic acid-amido synthetase	98.37
PLN02247	606	indole-3-acetic acid-amido synthetase	97.88
PLN02620	612	indole-3-acetic acid-amido synthetase	97.59
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.45
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.71
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.17
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	84.99

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-114  Score=917.67  Aligned_cols=624  Identities=50%  Similarity=0.864  Sum_probs=578.8

Q ss_pred             CcccccCCCCc-cccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCC
Q 005406           56 WNVYRSARSPL-TLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG  134 (698)
Q Consensus        56 ~~~~r~~~~~~-~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g  134 (698)
                      .++||+...+. .+...  ......|+++.|.+.+..+|+.++++.+...+ ..++|+|+||+|+.+++.++|++|+++|
T Consensus        53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG  129 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLG  129 (691)
T ss_pred             CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence            46778776642 22222  24578999999999999999999999995544 3578999999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEec-ccchHHHHhhhh--cCCceeE
Q 005406          135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI-PQTLNTLLSFIS--EIPSVHL  211 (698)
Q Consensus       135 v~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~-~~~~~~~~~~~~--~~~~~~~  211 (698)
                      +++++.|||++.|++||+++.+||..+|+++|||+++++++++.||++++.+.++|++ ++....+.+...  .+|.++.
T Consensus       130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~  209 (691)
T KOG1256|consen  130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA  209 (691)
T ss_pred             CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence            9999999999999999999999999999999999999999999999999999999999 566777777666  3789999


Q ss_pred             EEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCC-CCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc
Q 005406          212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF-CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL  290 (698)
Q Consensus       212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~  290 (698)
                      +|.+++............++.+++|+++++.|....... .++.|+|.|.|+|||||||+|||||+||+|+++.+.....
T Consensus       210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~  289 (691)
T KOG1256|consen  210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF  289 (691)
T ss_pred             EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence            999999888888888888999999999999997766665 5889999999999999999999999999999986553211


Q ss_pred             ---c---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHH
Q 005406          291 ---M---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNA  364 (698)
Q Consensus       291 ---~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  364 (698)
                         .   ......|+++|||||+|+++++.....++.|++++|+++|+..+.+++++.+||.+.+||++|+++++.+++.
T Consensus       290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~  369 (691)
T KOG1256|consen  290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ  369 (691)
T ss_pred             hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence               1   1223479999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHHHH-HHHHcCCCC--chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceec
Q 005406          365 VKASGTLREKLFTAAYNSKK-QAIVSGQTP--SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVME  441 (698)
Q Consensus       365 ~~~~~~~~~~l~~~~~~~k~-~~~~~~~~~--~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~  441 (698)
                      +.+.+.+++++|+.|+..|. ..+..|...  ..+||+++|+|+++.||+++|.+++|++|+++++..+++..+||+|++
T Consensus       370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e  449 (691)
T KOG1256|consen  370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE  449 (691)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence            99999999999999999999 777777765  699999999999999999999999999999999999999999999999


Q ss_pred             ccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCC
Q 005406          442 GYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD  521 (698)
Q Consensus       442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~  521 (698)
                      +||+|||++.++...+++...+++|.|+|++++|++|+++++|...+.   .|||||||+++|.|||+||++|+++||+|
T Consensus       450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD  526 (691)
T KOG1256|consen  450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED  526 (691)
T ss_pred             cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence            999999998788777777799999999999999999999999999987   89999999999999999999999999999


Q ss_pred             CceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHH
Q 005406          522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAA  601 (698)
Q Consensus       522 gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~  601 (698)
                      ||+||||+|+|+++|.|+|+||+|++||+++||||.|+.||+++.+.+.|.+++|+|++.+.+++|+|+|+++....|+.
T Consensus       527 GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~  606 (691)
T KOG1256|consen  527 GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAA  606 (691)
T ss_pred             cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          602 SQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                      ++++. .+++++|++.++++.+..+|.++.++++|.+++..+.|++.+++||++||++|||.|++|..+.++|+++||+|
T Consensus       607 ~~~~~-~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~m  685 (691)
T KOG1256|consen  607 KDGVK-GTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDEL  685 (691)
T ss_pred             HccCc-hhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            88888 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccc
Q 005406          682 YAELA  686 (698)
Q Consensus       682 y~~~~  686 (698)
                      |++.+
T Consensus       686 Y~~~~  690 (691)
T KOG1256|consen  686 YKEIK  690 (691)
T ss_pred             Hhhcc
Confidence            99864

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-110  Score=843.53  Aligned_cols=640  Identities=39%  Similarity=0.633  Sum_probs=594.3

Q ss_pred             CceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEee--------cCCc------
Q 005406           42 GYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVR--------VDGT------  107 (698)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~--------~~~~------  107 (698)
                      +++|++.....++++.+|||....+.|++.  +.+...|++++|+..++++.++.++++|+.        .||+      
T Consensus         6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~   83 (678)
T KOG1180|consen    6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE   83 (678)
T ss_pred             hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence            466766666566778899999886667754  466899999999999999999999999865        3454      


Q ss_pred             cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccc
Q 005406          108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVR-IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (698)
Q Consensus       108 ~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~-V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~  186 (698)
                      .++|.|+||.|+.+++.++|++|.+.|++++++ |+|+++.+.+|+++.+||++.+.++|.++.+++.+.+.|-|+++++
T Consensus        84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~  163 (678)
T KOG1180|consen   84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES  163 (678)
T ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence            578999999999999999999999999998775 9999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCC----CCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEE
Q 005406          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLP----SLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATIC  262 (698)
Q Consensus       187 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  262 (698)
                      +.+||+.+.+..+...++.++.++.||.+++.+....    ......++.+++|+++++.+.....++.++.|+|+|+||
T Consensus       164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM  243 (678)
T KOG1180|consen  164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM  243 (678)
T ss_pred             eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence            9999999999999988899999999999996443222    112346789999999999998887777788999999999


Q ss_pred             ecCCCCCCcceeeechHHHHHHHHhccccc-ccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC----Ch-----
Q 005406          263 YTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG----DN-----  332 (698)
Q Consensus       263 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~~-----  332 (698)
                      |||||||.||||+++|+|+++.+....... .+.+.|+++.|+||+|++++...+.+++.|+++++.+.    |.     
T Consensus       244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~  323 (678)
T KOG1180|consen  244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIK  323 (678)
T ss_pred             EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhc
Confidence            999999999999999999999998877664 78899999999999999999999999999999998651    11     


Q ss_pred             hhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCc
Q 005406          333 LKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR  412 (698)
Q Consensus       333 ~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~  412 (698)
                      ..---++..+|||+|.+||.+|+++.+.+.+++...+.+.+.+|..++..|+..+......+.++|.++|+++|..+|++
T Consensus       324 kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~  403 (678)
T KOG1180|consen  324 KGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGN  403 (678)
T ss_pred             cCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCc
Confidence            11223678899999999999999999999999999999999999999999999998877888999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCC
Q 005406          413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP  492 (698)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~  492 (698)
                      ||++++||+|++++..+|+..+++|++.++||.||+++..+...+.+...|.+|.|+++++++++|.++++|...+.| |
T Consensus       404 lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-P  482 (678)
T KOG1180|consen  404 LRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-P  482 (678)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             ccEEEEeCCCccccccCChhhhcccccC-CC--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCc
Q 005406          493 RGEICVRGPIVFQGYYKNEVQTREVIDG-DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK  569 (698)
Q Consensus       493 ~GEl~v~g~~~~~GY~~~~~~t~~~f~~-~g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p  569 (698)
                      +|||||+|+++..|||+||+.|++.|.. +|  ||+|||+|++.+||.|.|+||+||++|+.+||||+++.||++|+.+|
T Consensus       483 rGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p  562 (678)
T KOG1180|consen  483 RGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSP  562 (678)
T ss_pred             CceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCc
Confidence            9999999999999999999999999977 88  99999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec
Q 005406          570 FVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP  649 (698)
Q Consensus       570 ~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~  649 (698)
                      .|..++|++++....+||+|||+...+..|+.+.|++..+++++|++.++.+++.++|.+.+++.+|.++++|..|++.+
T Consensus       563 ~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~  642 (678)
T KOG1180|consen  563 YVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSP  642 (678)
T ss_pred             chhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecC
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhc
Q 005406          650 EPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE  684 (698)
Q Consensus       650 ~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~  684 (698)
                      +++|.|||++|+..|++|+.++..|+++|+++|++
T Consensus       643 e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  643 EPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             CCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999986

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.7e-100  Score=870.82  Aligned_cols=648  Identities=81%  Similarity=1.353  Sum_probs=579.3

Q ss_pred             ccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHH
Q 005406           38 VQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG  117 (698)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~  117 (698)
                      .+.+.||++++++.+.+.+.+||+...+..+.+++++.+...|++++|+++++++|+++|++.+...++..++++++||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~   82 (651)
T PLN02736          3 VHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYG   82 (651)
T ss_pred             ccccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHH
Confidence            34567999999999999999999988888888777677788999999999999999999997652123333457889999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchH
Q 005406          118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN  197 (698)
Q Consensus       118 el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  197 (698)
                      ||.++++++|++|+++|+++||+|+|+++|++||+++++||+++|+++||++++++.+++.+++++++++++|++.+...
T Consensus        83 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~  162 (651)
T PLN02736         83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN  162 (651)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeec
Q 005406          198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT  277 (698)
Q Consensus       198 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~t  277 (698)
                      .+......++.++.+++.+.............+....+|++++..+...+.+.....++++++|+|||||||.||||++|
T Consensus       163 ~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~ls  242 (651)
T PLN02736        163 TLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLT  242 (651)
T ss_pred             HHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEe
Confidence            77776667788888887754221111111123456778998887554332333445789999999999999999999999


Q ss_pred             hHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHH
Q 005406          278 HGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRI  357 (698)
Q Consensus       278 h~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l  357 (698)
                      |+++++.+.+....+++.++|++++++|++|++++...+.+++.|+++++.++++..+++.|++++||+++++|++|..+
T Consensus       243 h~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l  322 (651)
T PLN02736        243 HGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRI  322 (651)
T ss_pred             cHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHH
Confidence            99999998888777888999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC
Q 005406          358 YAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC  437 (698)
Q Consensus       358 ~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~  437 (698)
                      .+.+...+...+.+++.++..++..+...+..+..+...++.+++++++..+|+++|.+++||+++++++.++++..+|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~  402 (651)
T PLN02736        323 YDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGG  402 (651)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            99998888889999999999999988877777767777889999999999999999999999999999999999988999


Q ss_pred             ceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccc
Q 005406          438 QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV  517 (698)
Q Consensus       438 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~  517 (698)
                      +++++||+||+++.++.....+...+++|+|+|+++++|+|.+++.+...+.+++.|||+++||++|.|||++|+.|++.
T Consensus       403 ~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~  482 (651)
T PLN02736        403 RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV  482 (651)
T ss_pred             CeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhh
Confidence            99999999999877766666566778999999999999999776666666666678999999999999999999999999


Q ss_pred             ccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHH
Q 005406          518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLK  597 (698)
Q Consensus       518 f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~  597 (698)
                      |+.+|||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||+|.+|+|+|+..++.++|+|+++++.+.
T Consensus       483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~  562 (651)
T PLN02736        483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLK  562 (651)
T ss_pred             hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHH
Confidence            98899999999999999999999999999999878999999999999999999999999998778899999999999999


Q ss_pred             HHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          598 DWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      .|.+..+++..++.++|+++++++.+.++|++.+++.+|++|++|++|++++++|+++||++|++||++|+++++.|+++
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~  642 (651)
T PLN02736        563 AWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKA  642 (651)
T ss_pred             HHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence            99998888767889999999999999999999988789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q 005406          678 ISNMYAEL  685 (698)
Q Consensus       678 i~~ly~~~  685 (698)
                      |++||++.
T Consensus       643 i~~~y~~~  650 (651)
T PLN02736        643 ISDMYAEL  650 (651)
T ss_pred             HHHHHhhc
Confidence            99999875

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.6e-97  Score=852.91  Aligned_cols=638  Identities=36%  Similarity=0.643  Sum_probs=553.9

Q ss_pred             CCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeec--------CC------
Q 005406           41 QGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRV--------DG------  106 (698)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------~~------  106 (698)
                      .+++++++....++  .+|||+... .+...  +.+...|+.++|+++++++||++|++++...        ++      
T Consensus        25 ~~~~~~~~~~~~~~--~~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~   99 (696)
T PLN02387         25 KKRGVPVDVGGEPG--YAIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL   99 (696)
T ss_pred             ccceecCCCCCCCC--CceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence            45788888555444  359999855 44433  2457889999999999999999999876321        22      


Q ss_pred             ccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccc
Q 005406          107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (698)
Q Consensus       107 ~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~  186 (698)
                      ..++|+++||+|++++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++|||+++++++++.++|+++++
T Consensus       100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~  179 (696)
T PLN02387        100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV  179 (696)
T ss_pred             cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence            12568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCC-CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecC
Q 005406          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL-PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTS  265 (698)
Q Consensus       187 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  265 (698)
                      +++|++.+....+......++.++.++.+++........ ....++.+.+|+++...+...+.+...+.++|+++|+|||
T Consensus       180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS  259 (696)
T PLN02387        180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS  259 (696)
T ss_pred             CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence            999999888777777777778888899887643211100 1223456778999887665433333456789999999999


Q ss_pred             CCCCCcceeeechHHHHHHHHhcccc-cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC----C-----hhhH
Q 005406          266 GTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG----D-----NLKL  335 (698)
Q Consensus       266 GTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~-----~~~l  335 (698)
                      ||||.||||++||+|+++.+...... .++.++|++++++|++|++++...+.+++.|+++.+...    +     ...+
T Consensus       260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~  339 (696)
T PLN02387        260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT  339 (696)
T ss_pred             CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence            99999999999999999888766544 357889999999999999999887777888888876431    1     2345


Q ss_pred             HHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHHHcC
Q 005406          336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG-----QTPSKMWDRLVFNKIRERLG  410 (698)
Q Consensus       336 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~-----~~~~~~~d~~~~~~~~~~~g  410 (698)
                      ++++++++||+++++|++|+++.+.+...+...+.+++.++..++..+...+...     ...+.+||.++|+++++.+|
T Consensus       340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg  419 (696)
T PLN02387        340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG  419 (696)
T ss_pred             hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence            6789999999999999999999999888888888999999999998887765432     23457899999999999999


Q ss_pred             CcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCC
Q 005406          411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (698)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~  490 (698)
                      +++|.+++||+++++++.++++..+|++++++||+||+++.++.....+...+++|.|+|+++++|+|.+++++...+.+
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~  499 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP  499 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence            99999999999999999999998889999999999999887776666666778999999999999999888877766666


Q ss_pred             CCccEEEEeCCCccccccCChhhhcccc--cCCC--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHh
Q 005406          491 HPRGEICVRGPIVFQGYYKNEVQTREVI--DGDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA  566 (698)
Q Consensus       491 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f--~~~g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~  566 (698)
                      ++.|||+|+||++|.|||++|+.|+++|  +.+|  ||+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.
T Consensus       500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~  579 (696)
T PLN02387        500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS  579 (696)
T ss_pred             CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence            6789999999999999999999999998  4455  99999999999999999999999999987899999999999999


Q ss_pred             cCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEE
Q 005406          567 KCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVT  646 (698)
Q Consensus       567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~  646 (698)
                      +||.|.+|+|+|++.+.+++|+|+|+++.+..|+.+.+++..++.++|+++++++.+.+.+.+.+++.+|++|++|++|+
T Consensus       580 ~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~  659 (696)
T PLN02387        580 VSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIK  659 (696)
T ss_pred             cCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEE
Confidence            99999999999998889999999999999999999998877789999999999999999999998888999999999999


Q ss_pred             EecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHh
Q 005406          647 LMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA  683 (698)
Q Consensus       647 ~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~  683 (698)
                      +++++||++||++||++|++|+.+++.|+++|++||+
T Consensus       660 l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        660 LLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             EECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999995

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.2e-96  Score=837.09  Aligned_cols=629  Identities=40%  Similarity=0.714  Sum_probs=527.6

Q ss_pred             CCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh
Q 005406           53 TGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF  132 (698)
Q Consensus        53 ~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~  132 (698)
                      +.++++||++.....+..   +.+...|+.++|+++++++||++|++++...++..+.++++||+||+++++++|++|++
T Consensus        22 ~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~   98 (666)
T PLN02614         22 PSVGPVYRSIFAKDGFPN---PIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS   98 (666)
T ss_pred             CCCCCcccCcccccccCC---CCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH
Confidence            567888998865555432   24467799999999999999999998652112222446789999999999999999999


Q ss_pred             CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhc-CCceeE
Q 005406          133 HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE-IPSVHL  211 (698)
Q Consensus       133 ~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~  211 (698)
                      +|+++||+|+|+++|++||+++++||+++|+++||++++++.+++.+++++++++++|++.+....+...... .+.++.
T Consensus        99 ~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~  178 (666)
T PLN02614         99 VGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKT  178 (666)
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceE
Confidence            9999999999999999999999999999999999999999999999999999999999987655544333222 233666


Q ss_pred             EEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc
Q 005406          212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM  291 (698)
Q Consensus       212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  291 (698)
                      ++.+++............+..+.++++++..+.....+.....++|+++|+|||||||.||||++||+|+++.+......
T Consensus       179 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~  258 (666)
T PLN02614        179 VVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRL  258 (666)
T ss_pred             EEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence            77765421110000111244567888887654322222233568999999999999999999999999999877654433


Q ss_pred             c-----ccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHh
Q 005406          292 V-----QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK  366 (698)
Q Consensus       292 ~-----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  366 (698)
                      +     ++.++|++++++|++|++++...+.+++.|+++++.++++..++++|++++||+++++|++|+.++..+...+.
T Consensus       259 ~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  338 (666)
T PLN02614        259 LKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS  338 (666)
T ss_pred             ccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHh
Confidence            2     57789999999999999999776677889999999888999999999999999999999999999998888888


Q ss_pred             hcchHHHHHHHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceeccc
Q 005406          367 ASGTLREKLFTAAYNSKKQAIVSGQTP---SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGY  443 (698)
Q Consensus       367 ~~~~~~~~l~~~~~~~k~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~Y  443 (698)
                      ..+.+++.++..++..+...+..+...   ..+++.++++++++.+|+++|.+++||+++++++.++++...+++++++|
T Consensus       339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~Y  418 (666)
T PLN02614        339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGY  418 (666)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeC
Confidence            888888899998888776666554322   36778889999999999999999999999999875555443358999999


Q ss_pred             CcchhcchhcccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCC
Q 005406          444 GMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG  522 (698)
Q Consensus       444 G~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~g  522 (698)
                      |+||+++.++...+.+ ...+++|+|+|+++++|+|++++++.+ ..+++.|||+|+||++|.|||++|+.|++.| .+|
T Consensus       419 G~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dG  496 (666)
T PLN02614        419 GLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDG  496 (666)
T ss_pred             chHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCCCceEEEcCCcccccccCCHHHhhhhh-ccC
Confidence            9999986555444433 356899999999999999965543221 2234589999999999999999999999999 589


Q ss_pred             ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHH
Q 005406          523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS  602 (698)
Q Consensus       523 w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~  602 (698)
                      ||+|||+|++|+||+|+|+||+||+||+++|+||+|.|||++|.+||+|.+|+|+|++.+.+++|+|+|+.+.+..|+.+
T Consensus       497 w~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~  576 (666)
T PLN02614        497 WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAE  576 (666)
T ss_pred             CcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHh
Confidence            99999999999999999999999999987899999999999999999999999999987889999999999999999999


Q ss_pred             cCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHH
Q 005406          603 QGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY  682 (698)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly  682 (698)
                      +++. .+..++|+++++++.+.+++.+.+++.+|++|++|++|+++++.||++||++|||+|++|+.+.+.|+++|++||
T Consensus       577 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly  655 (666)
T PLN02614        577 NGVS-GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY  655 (666)
T ss_pred             cCCC-cCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHH
Confidence            9887 478899999999999999999998778999999999999999999999999999999999999999999999999


Q ss_pred             hcccC
Q 005406          683 AELAT  687 (698)
Q Consensus       683 ~~~~~  687 (698)
                      ++..+
T Consensus       656 ~~~~~  660 (666)
T PLN02614        656 KTTNE  660 (666)
T ss_pred             Hhhhh
Confidence            97654

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.5e-96  Score=832.69  Aligned_cols=628  Identities=24%  Similarity=0.394  Sum_probs=534.9

Q ss_pred             CCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHH
Q 005406           41 QGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS  120 (698)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~  120 (698)
                      ..|+..++.+....++.+||.......     .+.....|+.++|.++++++|+++|+...  .++  ..++++||+|+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~--~~g--~~~~~~Ty~el~   98 (746)
T PTZ00342         28 KGYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH--SCG--EPQNYITYGNFF   98 (746)
T ss_pred             ceeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc--CCC--CCceeeeHHHHH
Confidence            458899999888888999998765554     12346789999999999999999999753  011  236889999999


Q ss_pred             HHHHHHHHHHHhC---CCCCC-----------CEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccc
Q 005406          121 AARKEIGSGLLFH---GLQKG-----------VRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (698)
Q Consensus       121 ~~~~~la~~L~~~---gv~~g-----------~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~  186 (698)
                      +++.++|++|.++   |+++|           |+|+|+++|++||+++++||+++|+++||++++++.+++.++|+++++
T Consensus        99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~  178 (746)
T PTZ00342         99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL  178 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence            9999999999974   99998           899999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCC-----------------CC-------------------------
Q 005406          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-----------------PS-------------------------  224 (698)
Q Consensus       187 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-----------------~~-------------------------  224 (698)
                      +++|++.+..+.+.+....++.++.++++++.....                 ..                         
T Consensus       179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (746)
T PTZ00342        179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL  258 (746)
T ss_pred             CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998888888777777788899999887532110                 00                         


Q ss_pred             ---------------CCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc
Q 005406          225 ---------------LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS  289 (698)
Q Consensus       225 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  289 (698)
                                     .....+.....|+++.+.... ..+..+..++|+++|+|||||||.||||++||+|+++.+....
T Consensus       259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~  337 (746)
T PTZ00342        259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC  337 (746)
T ss_pred             ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence                           000112344556665543211 2223345789999999999999999999999999998876554


Q ss_pred             ccc--ccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhh
Q 005406          290 LMV--QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA  367 (698)
Q Consensus       290 ~~~--~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  367 (698)
                      ...  ...+.|++++++|++|++++...+.+++.|++++++++++..++++|++++||++++||++|++|++.+...+..
T Consensus       338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~  417 (746)
T PTZ00342        338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINN  417 (746)
T ss_pred             hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhh
Confidence            321  233568999999999999998888889999999999889999999999999999999999999999999888888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHcCCCCchhhHHH--HHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCc
Q 005406          368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL--VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM  445 (698)
Q Consensus       368 ~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~--~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~  445 (698)
                      .+.+++.++.+++..+..... + ..+.+++.+  +|+++++.+|+++|.+++||+|+++++.++|+..+|++++++||+
T Consensus       418 ~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGl  495 (746)
T PTZ00342        418 LPPLKRFLVKKILSLRKSNNN-G-GFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGL  495 (746)
T ss_pred             cCHHHHHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeecc
Confidence            888999999999988877533 2 244566655  799999999999999999999999999999998899999999999


Q ss_pred             chhcchhcccCCCCCCCCCccCCC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCce
Q 005406          446 TETSCIISAIDKGDNLSGHVGSPN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL  524 (698)
Q Consensus       446 TE~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~  524 (698)
                      ||+++.++...+.+...+++|+|+ |+++++|+|.++.....   +.+.|||+++||++|.|||++|+.|+++|+.||||
T Consensus       496 TEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~---~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~  572 (746)
T PTZ00342        496 TETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATD---TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF  572 (746)
T ss_pred             CcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCC---CCCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence            999877776666667789999998 99999999866533222   22479999999999999999999999999889999


Q ss_pred             ecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcC
Q 005406          525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG  604 (698)
Q Consensus       525 ~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~  604 (698)
                      +|||+|++|+||+|+|+||+||+||+++|+||+|.+||++|.+||.|.+|+|+|++...+++|+|+|+++.+..|+++.+
T Consensus       573 ~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~  652 (746)
T PTZ00342        573 KTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN  652 (746)
T ss_pred             cCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence            99999999999999999999999998899999999999999999999999999987678999999999999999998753


Q ss_pred             ------CCcccHHH-----hhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          605 ------IKFEDLEQ-----LCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       605 ------~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                            +....+.+     .|+++++.+.+.+++.+..++.+|++|+++++|+++++.||+ +|++|||.|++|+.+.+.
T Consensus       653 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTpt~KlkR~~v~~~  731 (746)
T PTZ00342        653 MLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLTPTFKVKRFYVFKD  731 (746)
T ss_pred             CccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccChhhhhhHHHHHHH
Confidence                  33234444     556778899999999999887899999999999999999999 679999999999999999


Q ss_pred             HH---HHHHHHHhc
Q 005406          674 FA---KAISNMYAE  684 (698)
Q Consensus       674 ~~---~~i~~ly~~  684 (698)
                      |+   +.|++||.+
T Consensus       732 y~~~i~~i~~~y~~  745 (746)
T PTZ00342        732 YAFFIDQVKKIYKN  745 (746)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99   777888864

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.3e-95  Score=828.82  Aligned_cols=626  Identities=43%  Similarity=0.733  Sum_probs=533.9

Q ss_pred             CCcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh
Q 005406           53 TGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF  132 (698)
Q Consensus        53 ~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~  132 (698)
                      ++++++||++...+.+...   .+...|++++|.++++++|+++|++.+...++..++++++||+||.++++++|++|.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~   96 (660)
T PLN02861         20 PSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS   96 (660)
T ss_pred             CCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH
Confidence            5678899999877766543   3567899999999999999999998753223334567889999999999999999999


Q ss_pred             CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCC-ceeE
Q 005406          133 HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP-SVHL  211 (698)
Q Consensus       133 ~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~  211 (698)
                      +|+++||+|+|+++|++||+++++||+++|+++|||+++++.+++.+++++++++++|++.+....+......++ .++.
T Consensus        97 ~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~  176 (660)
T PLN02861         97 RGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKT  176 (660)
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999998776665555444443 5777


Q ss_pred             EEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc
Q 005406          212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM  291 (698)
Q Consensus       212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  291 (698)
                      ++.+++............+....+|+++...+... ....+..++|+++|+|||||||.||||++||+++++.+......
T Consensus       177 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~  255 (660)
T PLN02861        177 IVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHL  255 (660)
T ss_pred             EEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhc
Confidence            77776432111001111234567888887654321 12234568999999999999999999999999999887665443


Q ss_pred             cc-----cCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHh
Q 005406          292 VQ-----FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK  366 (698)
Q Consensus       292 ~~-----~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  366 (698)
                      ++     +.++|++++++|++|++++...+.+++.|+++++.++++..++++|++++||+++++|++|+.+++.+...+.
T Consensus       256 ~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  335 (660)
T PLN02861        256 LKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKIS  335 (660)
T ss_pred             cccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHh
Confidence            33     4688999999999999998877778999999999888999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC-Cceecc
Q 005406          367 ASGTLREKLFTAAYNSKKQAIVSGQTP---SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEG  442 (698)
Q Consensus       367 ~~~~~~~~l~~~~~~~k~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~  442 (698)
                      ..+.+++.++.+++..+...+..+...   .+.++.++|+++++.+|+++|.+++||+++++++.++++ .++ ..++++
T Consensus       336 ~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~~~  414 (660)
T PLN02861        336 SGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLSQG  414 (660)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCeeEe
Confidence            999999999999999888877654322   356788899999999999999999999999999876554 455 479999


Q ss_pred             cCcchhcchhcccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCC
Q 005406          443 YGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD  521 (698)
Q Consensus       443 YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~  521 (698)
                      ||+||+++.++.....+ ...+++|+|+|+++++|+|.+++++... .+++.|||+|+||+++.|||++|+.|++.| .+
T Consensus       415 YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~-~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~d  492 (660)
T PLN02861        415 YGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDAL-SDVPRGEICLRGNTLFSGYHKRQDLTEEVL-ID  492 (660)
T ss_pred             cchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccC-CCCCceeEEEcCCcccccccCCHHHHHhhh-hc
Confidence            99999987655443332 3568999999999999999655443221 233589999999999999999999999999 58


Q ss_pred             CceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHH
Q 005406          522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAA  601 (698)
Q Consensus       522 gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~  601 (698)
                      |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|.+.++.++|+|+++.+.+..|+.
T Consensus       493 Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~  572 (660)
T PLN02861        493 GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAA  572 (660)
T ss_pred             cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHH
Confidence            99999999999999999999999999998789999999999999999999999999998778999999999999999999


Q ss_pred             HcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          602 SQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                      +.++. ..+.++|++.+.+..+.+++++.+++.+|+.|++++.|+++++.||++||++|+++|++|+++.+.|+++|++|
T Consensus       573 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~l  651 (660)
T PLN02861        573 NNNKT-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQL  651 (660)
T ss_pred             HcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHH
Confidence            88764 46788999999999999999999987789999999999999999999999999999999999999999999999


Q ss_pred             Hhccc
Q 005406          682 YAELA  686 (698)
Q Consensus       682 y~~~~  686 (698)
                      |++..
T Consensus       652 Y~~~~  656 (660)
T PLN02861        652 YSEAK  656 (660)
T ss_pred             HHhhh
Confidence            99754

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.5e-95  Score=825.49  Aligned_cols=628  Identities=43%  Similarity=0.695  Sum_probs=541.1

Q ss_pred             CcCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC
Q 005406           54 GKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH  133 (698)
Q Consensus        54 ~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~  133 (698)
                      .++++||++...+.+..   ..++..|++++|.+.++++|+++|++.+...++..++++|+||+|+.+++.++|++|.+.
T Consensus        20 ~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~   96 (660)
T PLN02430         20 SVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRAS   96 (660)
T ss_pred             CCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHc
Confidence            37899999876655432   245789999999999999999999987632234445678899999999999999999999


Q ss_pred             CCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHH-HHhhhhcCCceeEE
Q 005406          134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT-LLSFISEIPSVHLI  212 (698)
Q Consensus       134 gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i  212 (698)
                      |+++||+|+|+++|++||+++++||+++|+++||++++++++++.+++++++++++|++...... +.......+.++.+
T Consensus        97 Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~i  176 (660)
T PLN02430         97 GAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAI  176 (660)
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999998764332 22222335567788


Q ss_pred             EEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc-
Q 005406          213 VVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-  291 (698)
Q Consensus       213 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-  291 (698)
                      |.+++............+...++|++++..+...+....+..|+|+++|+|||||||.||||++||+|+++.+...... 
T Consensus       177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~  256 (660)
T PLN02430        177 VSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFM  256 (660)
T ss_pred             EEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhc
Confidence            8876532211111112345667899988766443333344578999999999999999999999999999877654321 


Q ss_pred             ----cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhh
Q 005406          292 ----VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA  367 (698)
Q Consensus       292 ----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  367 (698)
                          .+++++|++++++|++|++++...+.+++.|++++++..++..+++++++++||++.++|++|+++.+.+...+..
T Consensus       257 ~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~  336 (660)
T PLN02430        257 EQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE  336 (660)
T ss_pred             cccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhc
Confidence                2567899999999999999998877788999999998889999999999999999999999999999999888888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHcCCC---CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccC
Q 005406          368 SGTLREKLFTAAYNSKKQAIVSGQT---PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYG  444 (698)
Q Consensus       368 ~~~~~~~l~~~~~~~k~~~~~~~~~---~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG  444 (698)
                      .+.+++.++..++..|...+..+..   .+.++|.++|+++++.+|+++|.+++||+++++++.++++...++.++++||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG  416 (660)
T PLN02430        337 LNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYG  416 (660)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecc
Confidence            8889999999999999888766542   3467899999999999999999999999999999988877654578999999


Q ss_pred             cchhcchhcccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCc
Q 005406          445 MTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGW  523 (698)
Q Consensus       445 ~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw  523 (698)
                      +||+++.++...+.+ ...+++|+|.++++++++|++++++.+.+. ++.|||+|+||+++.|||++|+.|++.| .+||
T Consensus       417 ~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~-~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw  494 (660)
T PLN02430        417 LTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGE-PPRGEICVRGKCLFSGYYKNPELTEEVM-KDGW  494 (660)
T ss_pred             hhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCC-CCcceEEecCCCccccccCChHHhhhhh-hccc
Confidence            999987766654443 457899999999999999877766554433 2479999999999999999999999999 6999


Q ss_pred             eecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHc
Q 005406          524 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ  603 (698)
Q Consensus       524 ~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~  603 (698)
                      |+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.+++++|+|+|+++.+..|+...
T Consensus       495 ~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~  574 (660)
T PLN02430        495 FHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDN  574 (660)
T ss_pred             eeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhC
Confidence            99999999999999999999999999888999999999999999999999999998777899999999999999999988


Q ss_pred             CCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHh
Q 005406          604 GIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA  683 (698)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~  683 (698)
                      ++. ....++|+++++++.+.+++.+.+++.+|++|+++++|+++++.||++||++|||+|++|+.+.+.|+++|++||+
T Consensus       575 ~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  653 (660)
T PLN02430        575 GFT-GSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR  653 (660)
T ss_pred             CCC-CCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence            876 5678899999999999999999987788999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 005406          684 ELAT  687 (698)
Q Consensus       684 ~~~~  687 (698)
                      +...
T Consensus       654 ~~~~  657 (660)
T PLN02430        654 KLAE  657 (660)
T ss_pred             hhhh
Confidence            7654

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1e-93  Score=774.56  Aligned_cols=584  Identities=39%  Similarity=0.640  Sum_probs=503.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...++..++.+.++.+|+.+++...     ..+.++.+||+|+.+++.++|++|++.|++.||+|+|++.|++||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~   88 (613)
T COG1022          14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL   88 (613)
T ss_pred             hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4577899999999999998888765     24668999999999999999999999999779999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchH-HHHhhhhcCCceeEEEEeCC----CCC-CCCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN-TLLSFISEIPSVHLIVVVGG----KDE-HLPSLPSTSG  230 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~ii~~~~----~~~-~~~~~~~~~~  230 (698)
                      ||+.+|++.||++++.+++++.|+|++++++++|++..... .+......++.+..++...+    ... ..........
T Consensus        89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (613)
T COG1022          89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD  168 (613)
T ss_pred             HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence            99999999999999999999999999999999999985543 34434443333222221111    000 0000000011


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc-cCCCcEEEEcCChhhH
Q 005406          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-FYPSDIYMSYLPLAHI  309 (698)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~  309 (698)
                      .....+ .+....  ......+..+||+|.|+|||||||.|||||+||+|+++++........ ++++|++++++|++|+
T Consensus       169 ~~~~~~-~~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi  245 (613)
T COG1022         169 EGISLF-LIDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI  245 (613)
T ss_pred             ccchhh-hhcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHH
Confidence            111111 111111  111224678999999999999999999999999999999999998886 8999999999999999


Q ss_pred             HHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          310 YERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      +++.+.......|+...++..++..+.+++++++||++++||++|+.+.+.+.+++.+.+..++.+|.+++..+......
T Consensus       246 ~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~  325 (613)
T COG1022         246 FERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR  325 (613)
T ss_pred             HHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence            99998655555566666677899999999999999999999999999999999999999999999999999877543322


Q ss_pred             ----CCCCc--hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCC
Q 005406          390 ----GQTPS--KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSG  463 (698)
Q Consensus       390 ----~~~~~--~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~  463 (698)
                          +....  ...|+++|+|+++.+|+++|++++||+++++++..+++. .|+++.++||+|||++++++.++.+...+
T Consensus       326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~-lGi~i~eGYGlTEts~~~~v~~~~~~~~g  404 (613)
T COG1022         326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGLTETSAVVSVNPPDRFVLG  404 (613)
T ss_pred             hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHH-cCCCeEEEecccccccceEEccccCcccC
Confidence                22222  357999999999999999999999999999999999998 48999999999999999999999999999


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|.|+|++|+||+|              .|||+||||++|+|||++|++|+++|++||||+|||+|.+|++|+|+|+||
T Consensus       405 tvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gR  470 (613)
T COG1022         405 TVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR  470 (613)
T ss_pred             CcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeec
Confidence            999999999999999              699999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCC-cccHHHhhCCHHHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIK-FEDLEQLCNDPRARAA  622 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  622 (698)
                      +||+||+++|+||+|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.+.+..|+...+.. ..+..+++.++++.+.
T Consensus       471 kK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~  549 (613)
T COG1022         471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKL  549 (613)
T ss_pred             ccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHH
Confidence            99999999999999999999999999999999999 668999999999999999999887743 3678899999999999


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhccc
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA  686 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~~  686 (698)
                      +..++....+  .+..++.++++.+.++.++.++|.+|++.|++|+.+.+.|+++|+.+|.+..
T Consensus       550 ~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~  611 (613)
T COG1022         550 ILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQS  611 (613)
T ss_pred             HHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhccc
Confidence            9999999874  5589999999999999999999999999999999999999999999999754

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.1e-92  Score=809.53  Aligned_cols=629  Identities=32%  Similarity=0.549  Sum_probs=536.9

Q ss_pred             CCceEEcCCCCCCCcCcccccCCCCc----cccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEee----------cCC
Q 005406           41 QGYSVRLPEKLQTGKWNVYRSARSPL----TLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVR----------VDG  106 (698)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~----------~~~  106 (698)
                      ..|++++++......+++||++....    .+..   ..+...|++++|.++++++||++|++++..          .++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~  106 (700)
T PTZ00216         30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRN---EWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADG  106 (700)
T ss_pred             CCcceecCCCCCCCCCCcccCcccccchhccccc---ccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCC
Confidence            46889999888888899999976443    2222   234567999999999999999999998621          012


Q ss_pred             c--------cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHH
Q 005406          107 T--------VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK  178 (698)
Q Consensus       107 ~--------~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~  178 (698)
                      .        .++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.
T Consensus       107 ~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~  186 (700)
T PTZ00216        107 KERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALA  186 (700)
T ss_pred             ccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHH
Confidence            1        13578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccceEEEecccchHHHHhhhhc--CCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCC--CCCC-CCCCC
Q 005406          179 YVVNHAEIEAIFCIPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC--SSPQ-PFCPP  253 (698)
Q Consensus       179 ~il~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~  253 (698)
                      +++++++++++|++......+......  .+.. .++.+++....    ....+...++|++++..+.  .... ...+.
T Consensus       187 ~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (700)
T PTZ00216        187 YALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPE  261 (700)
T ss_pred             hhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCC
Confidence            999999999999987766555444332  2333 45555542211    1223556789999887652  1111 12345


Q ss_pred             CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccc-----ccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEe
Q 005406          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-----QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFY  328 (698)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~  328 (698)
                      .++|+++|+|||||||.||||++||+|+++.+.+....+     .+.++|++++++|++|++++......++.|+++++ 
T Consensus       262 ~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~-  340 (700)
T PTZ00216        262 NNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF-  340 (700)
T ss_pred             CcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE-
Confidence            789999999999999999999999999998877654432     24678999999999999998876667888888776 


Q ss_pred             CCChhhHHH-------HHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHH
Q 005406          329 QGDNLKLMD-------DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLV  401 (698)
Q Consensus       329 ~~~~~~l~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~  401 (698)
                       .++..+.+       ++++++||++.++|++|+.+.+.+...+...+.+++++|..++..+...+..+. ..++++.++
T Consensus       341 -~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v  418 (700)
T PTZ00216        341 -GSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKV  418 (700)
T ss_pred             -CCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHH
Confidence             45666655       789999999999999999999999888888889999999999998887776543 346789999


Q ss_pred             HHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCC
Q 005406          402 FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPE  481 (698)
Q Consensus       402 ~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~  481 (698)
                      |++++..+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|++|++++|+|.++
T Consensus       419 ~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~  497 (700)
T PTZ00216        419 FSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE  497 (700)
T ss_pred             HHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechh
Confidence            99999999999999999999999999999988778 99999999999877766666666778999999999999999654


Q ss_pred             CCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHH
Q 005406          482 MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKI  561 (698)
Q Consensus       482 ~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eI  561 (698)
                      ..  ....+++.|||+|+||+++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+++|++|+|++|
T Consensus       498 ~~--~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eI  575 (700)
T PTZ00216        498 YK--HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEAL  575 (700)
T ss_pred             hc--cCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHH
Confidence            22  2234445899999999999999999999999999999999999999999999999999999999669999999999


Q ss_pred             HHHHhcCcCcee--EEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCc
Q 005406          562 ENVYAKCKFVLQ--CFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGF  639 (698)
Q Consensus       562 E~~l~~~p~V~~--~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~  639 (698)
                      |++|.+||.|.+  ++|++.++..+++|+|+++.+.+..|+.++++. .++.++|+++++++.+.+++++..++.+|.+|
T Consensus       576 E~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  654 (700)
T PTZ00216        576 EALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIE-GEYPAILKDPEFQKKATESLQETARAAGRKSF  654 (700)
T ss_pred             HHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999997  567776778999999999999999999998876 67889999999999999999999988899999


Q ss_pred             ceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhc
Q 005406          640 EYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE  684 (698)
Q Consensus       640 ~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~  684 (698)
                      ++|++|+++++.||++||++|||+|++|+++.+.|+++|++||++
T Consensus       655 e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        655 EIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             eeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999985

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-80  Score=616.96  Aligned_cols=554  Identities=23%  Similarity=0.314  Sum_probs=458.4

Q ss_pred             hHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHH
Q 005406            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (698)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (698)
                      +-++.+++.+|+++.+-+...+-+..+-.--.                    +..|-..-..-.        =...|+.+
T Consensus         3 ~~~~~~~~~~l~~~~a~~s~~~i~~~~~~~~~--------------------~~~~~~g~~~ip--------l~~~Tigq   54 (596)
T KOG1177|consen    3 SLLQTISAYVLRQRSAFFSTFCISTNGWVLLS--------------------SHRYVHGCSQIP--------LDSETIGQ   54 (596)
T ss_pred             hhhhhhHHHHHHHHHhhcccccccccCceecc--------------------cccccCCCCCCC--------cccccHHH
Confidence            56788999999999988754443322221000                    000111111001        14579999


Q ss_pred             HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        84 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      +++..+++.||+.|+++..  .+     .++||+|+...++++|++|.++|+++||+|+|+.+|+.+|+...|||.++|.
T Consensus        55 ~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~  127 (596)
T KOG1177|consen   55 LLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL  127 (596)
T ss_pred             HHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence            9999999999999998851  22     3489999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccc-----hHHHHhhhh-------------cCCceeEEEEeCCCCCCCCCC
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFIS-------------EIPSVHLIVVVGGKDEHLPSL  225 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~-----~~~~~~~~~-------------~~~~~~~ii~~~~~~~~~~~~  225 (698)
                      +.|++||.+..+++++.|++.+++++|+....     .+.+.++..             .+|.+..+|..+++...    
T Consensus       128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~----  203 (596)
T KOG1177|consen  128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPL----  203 (596)
T ss_pred             EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcC----
Confidence            99999999999999999999999999997643     233333332             35667778877643211    


Q ss_pred             CCCCCceEeeHHHHHhcCCCCCCC-----CCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEE
Q 005406          226 PSTSGVKLISYLQLQSQGCSSPQP-----FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY  300 (698)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  300 (698)
                           ...+.++|++..+......     .....|||++.|.|||||||.|||+.+||-|++++.......+++...+++
T Consensus       204 -----~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i  278 (596)
T KOG1177|consen  204 -----PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRI  278 (596)
T ss_pred             -----CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEE
Confidence                 1236788888776542221     234578999999999999999999999999999999988888999999999


Q ss_pred             EEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005406          301 MSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT  377 (698)
Q Consensus       301 l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~  377 (698)
                      .+..|++|.+|... .+.++..|++++|..  +++...++.|.++|+|.++++|++|..|++.....             
T Consensus       279 ~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~-------------  345 (596)
T KOG1177|consen  279 CIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQ-------------  345 (596)
T ss_pred             EecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhc-------------
Confidence            99999999999666 889999999999976  89999999999999999999999999888631110             


Q ss_pred             HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccC
Q 005406          378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAID  456 (698)
Q Consensus       378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~  456 (698)
                                                   ..-.+++|.++.||+++|+++++.+...... .+...||+|||+...+...
T Consensus       346 -----------------------------~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~  396 (596)
T KOG1177|consen  346 -----------------------------QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSL  396 (596)
T ss_pred             -----------------------------cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeec
Confidence                                         0011589999999999999999998876654 4889999999998877766


Q ss_pred             CCC---CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEe
Q 005406          457 KGD---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL  533 (698)
Q Consensus       457 ~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  533 (698)
                      +.|   ....++|..+++.|.+|+| .++...+.+.   .||||+||++.+.|||++++.|.+..+.|.||+|||+|.+|
T Consensus       397 ~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~  472 (596)
T KOG1177|consen  397 LGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMD  472 (596)
T ss_pred             CCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceecCceEEEc
Confidence            655   4567899999999999999 5666566665   69999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccH
Q 005406          534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       534 ~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~  610 (698)
                      ++|+++|+||.+|+|+ ++|++|+|.|||+.|.+||.|.++.|+|.++   ++.++|.|-+.+....             
T Consensus       473 enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~-------------  538 (596)
T KOG1177|consen  473 ENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEG-------------  538 (596)
T ss_pred             CCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccc-------------
Confidence            9999999999999999 6999999999999999999999999999775   4788999988774310             


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAI  678 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i  678 (698)
                                ....++|+++|| .+|.+|++|+.|++++++|      +|-+|||+|-+++++.+.++
T Consensus       539 ----------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~FP------lT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  539 ----------KTTAETLKAMCK-GKLAHFKIPKYFVFVDEFP------LTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             ----------cccHHHHHHHHh-cccccccCCcEEEEeccCc------ccccccchhHHHHHHHHhhc
Confidence                      134789999998 7799999999999999999      99999999999999998654

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-80  Score=666.09  Aligned_cols=498  Identities=29%  Similarity=0.412  Sum_probs=415.9

Q ss_pred             HHHHhCCCC-CceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           87 YAVENYPDY-KYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG--LQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        87 ~~a~~~pd~-~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      +.+..++++ +++++.   +.   ..+.+||+|+++++.++|.+|.++|  +++||+|+++++|+++++++++||+..|+
T Consensus        24 ~~~~~~~~~~~~~i~~---~~---~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga   97 (537)
T KOG1176|consen   24 RPAFVYLDRNTSLVYQ---DS---DGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGA   97 (537)
T ss_pred             ccccccccCcceEEEe---cC---CCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence            334444444 777665   21   1356999999999999999999876  88999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee-HHHHHhc
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS-YLQLQSQ  242 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  242 (698)
                      ++.|+||.+.+.++.+.+++++++++|++.+..+.+.++...+.  ..++++.........   .......+ +.++...
T Consensus        98 ~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~  172 (537)
T KOG1176|consen   98 VLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVISI---SDLVEDLDAFEDLMPE  172 (537)
T ss_pred             cccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCcccc---ccccccccchhhcccc
Confidence            99999999999999999999999999999999998887776655  334444432111000   00111112 4444433


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH-HHHh
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV-SVYY  321 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~-~l~~  321 (698)
                      +....  ..+.+.+|++.|+|||||||.||||++||++++...........+...|+.++.+|++|.+|+...+. .+..
T Consensus       173 ~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~  250 (537)
T KOG1176|consen  173 GLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG  250 (537)
T ss_pred             CCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence            32222  45567799999999999999999999999999998877666677778999999999999999999777 5556


Q ss_pred             CcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHH
Q 005406          322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (698)
Q Consensus       322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (698)
                      |+++++.+ +++..+++.|++|++|+++++|.++..|.+....                                     
T Consensus       251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~-------------------------------------  293 (537)
T KOG1176|consen  251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIV-------------------------------------  293 (537)
T ss_pred             CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCcc-------------------------------------
Confidence            66666666 6999999999999999999999999999873100                                     


Q ss_pred             HHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC-CceecccCcchhcchhcccCCCC-CCCCCccCCCCCcEEEEEe
Q 005406          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVD  478 (698)
Q Consensus       401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d  478 (698)
                           .....+++|.+.+||+++++++.+.+++.++ ..+.++||+||+++.++.+...+ ..++++|.++++++.++.+
T Consensus       294 -----~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~  368 (537)
T KOG1176|consen  294 -----KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD  368 (537)
T ss_pred             -----CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC
Confidence                 0011169999999999999999999999998 88999999999998777766655 4889999999988888877


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecc
Q 005406          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP  558 (698)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p  558 (698)
                       +.+..++.++   .||||+||+++++|||+||++|++.|+++|||||||+|++|+||+|+|+||+||+||. +|++|+|
T Consensus       369 -e~g~~l~~~~---~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P  443 (537)
T KOG1176|consen  369 -ETGVSLGPNQ---TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSP  443 (537)
T ss_pred             -CCCCCCCCCC---ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCH
Confidence             6666666665   8999999999999999999999999988899999999999999999999999999996 9999999


Q ss_pred             hHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCC
Q 005406          559 EKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQ  635 (698)
Q Consensus       559 ~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  635 (698)
                      .|||++|..||.|.||+|+|.++   ++.++|+||.+++.                         ....++|.++++ ++
T Consensus       444 ~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~-------------------------~lte~di~~~v~-k~  497 (537)
T KOG1176|consen  444 AEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS-------------------------TLTEKDIIEYVR-KK  497 (537)
T ss_pred             HHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC-------------------------cCCHHHHHHHHH-hh
Confidence            99999999999999999999765   68999999998732                         122677888886 89


Q ss_pred             CCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          636 LRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       636 L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      |+.|++|+.++|++++|      +|++|||+|+.|+++|.+
T Consensus       498 l~~y~~~~~V~Fvd~lP------Ks~~GKi~R~~lr~~~~~  532 (537)
T KOG1176|consen  498 LPAYKLPGGVVFVDELP------KTPNGKILRRKLRDIAKK  532 (537)
T ss_pred             CChhhccCeEEEeccCC------CCCcchHHHHHHHHHHHh
Confidence            99999999999999999      999999999999999875

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.2e-75  Score=689.78  Aligned_cols=574  Identities=21%  Similarity=0.337  Sum_probs=474.9

Q ss_pred             cccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 005406           67 TLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI  146 (698)
Q Consensus        67 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~  146 (698)
                      .+...+++.+...|+.++|.+.++++|+++|++.+   . ..++++++||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus       415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~  490 (1452)
T PTZ00297        415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE  490 (1452)
T ss_pred             hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence            34556777888999999999999999999999643   1 1234688999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCC-CCCCC
Q 005406          147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HLPSL  225 (698)
Q Consensus       147 n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~~  225 (698)
                      |++||+++++||+++|+++||++++  .+++.+++++++++++|++.+....+.+...  +.++.+|++++... .....
T Consensus       491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~  566 (1452)
T PTZ00297        491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV  566 (1452)
T ss_pred             CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence            9999999999999999999999864  6789999999999999999877776665432  36888998864211 10001


Q ss_pred             CCCCCceEeeHHHHHhcCCCCCCC-CCCCCCCCeEEEEe---cCCCCCCcceeeechHHHHHHHHhccccc---ccCCCc
Q 005406          226 PSTSGVKLISYLQLQSQGCSSPQP-FCPPKPEDIATICY---TSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSD  298 (698)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d  298 (698)
                      ....++.+++|++++..+.....+ ....+++|++.|+|   ||||||.||||++||+|+++.+.......   ...++|
T Consensus       567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D  646 (1452)
T PTZ00297        567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH  646 (1452)
T ss_pred             cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence            112245678899999877432221 23347899999996   99999999999999999999988765422   356789


Q ss_pred             EEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005406          299 IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA  378 (698)
Q Consensus       299 ~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~  378 (698)
                      ++++++||+|++++...+.+++.|+++++  +++..++++|++++||++++||++|+++.+.+...+...+.++++++.+
T Consensus       647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~  724 (1452)
T PTZ00297        647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER  724 (1452)
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999998888888999999976  5789999999999999999999999999999998888888999999999


Q ss_pred             HHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCC--CCCHHHHHHHHHHhCCceecccCcchhcchhcccC
Q 005406          379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS--PLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID  456 (698)
Q Consensus       379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~--~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~  456 (698)
                      ++..|......+...+.++|+++|+++|+.+|+++|.+++||+  +++..+..      ++++..+||+||+.   +.+.
T Consensus       725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~  795 (1452)
T PTZ00297        725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS  795 (1452)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence            9998887777666667899999999999999999999999984  55543332      67899999999953   3344


Q ss_pred             CCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCC
Q 005406          457 KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG  536 (698)
Q Consensus       457 ~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G  536 (698)
                      +.+...  .|.|+|++++||.+++++.+.  +   +.|||+++       |++||+.|++.+  +||+         +||
T Consensus       796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~--~---~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG  850 (1452)
T PTZ00297        796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG--A---GIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDR  850 (1452)
T ss_pred             CCCccc--CCeecCceEEEEcccccccCC--C---CCCeEEEE-------ECCChHHHHHhh--CcCc---------cCC
Confidence            444433  499999999999987665432  1   37999996       458999999854  5775         699


Q ss_pred             cEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHH-HHHHHcCCCc-------c
Q 005406          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLK-DWAASQGIKF-------E  608 (698)
Q Consensus       537 ~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~-~~~~~~~~~~-------~  608 (698)
                      +|+|+||+||+||+++|+||+|+.||++|.++|.|.+++|+|++. ..++|+|+|+.+.+. +|+.++++..       .
T Consensus       851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~  929 (1452)
T PTZ00297        851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQL  929 (1452)
T ss_pred             eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCCccccccccC
Confidence            999999999999999999999999999999999999999999874 459999999999999 9999988742       1


Q ss_pred             cHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhcccC
Q 005406          609 DLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELAT  687 (698)
Q Consensus       609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~~~  687 (698)
                      ...+++++  ..+.+.+.+++..+.+++.++++++.|+++++.||++||++|||+|++|+.+.++|+++|++||++.++
T Consensus       930 ~~~el~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~~~ 1006 (1452)
T PTZ00297        930 GWTELVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006 (1452)
T ss_pred             CHHHHHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhccccc
Confidence            34455532  233455666555555678999999999999999999999999999999999999999999999997543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.9e-75  Score=664.94  Aligned_cols=542  Identities=23%  Similarity=0.335  Sum_probs=437.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ....|+.++|+++++++|+++|+.+.   +. .++++++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~~-~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  111 (614)
T PRK08180         36 DYPRRLTDRLVHWAQEAPDRVFLAER---GA-DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA  111 (614)
T ss_pred             CcCccHHHHHHHHHHHCCCCceeeec---cC-CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            35678999999999999999999764   21 234678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCC-----HHHHHHHHhhccceEEEecccc-hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCC
Q 005406          156 HACSAYSYISVPLYDTLG-----PDAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS  229 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~-----~~~l~~il~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~  229 (698)
                      +||+++|++++|+++.++     .+++.+++++++++++|++... .......... ...+ ++..+....         
T Consensus       112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~---------  180 (614)
T PRK08180        112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVE-VVAVRGAVP---------  180 (614)
T ss_pred             HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCce-EEEecCCCC---------
Confidence            999999999999999998     7999999999999999997542 1111111111 1122 233322100         


Q ss_pred             CceEeeHHHHHhcCCCCC--CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccC--CCcEEEEcCC
Q 005406          230 GVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--PSDIYMSYLP  305 (698)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p  305 (698)
                      .....+|+++........  .......++++++|+|||||||.||||++||+++++.+......+++.  .++++++++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lP  260 (614)
T PRK08180        181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLP  260 (614)
T ss_pred             CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecc
Confidence            001245666654321111  111234679999999999999999999999999998887766655553  5689999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC--CC---hhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ--GD---NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~--~~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      ++|.+++.. .+.+++.|+++++.+  ++   ...+++.++++++|+++++|++|..|.+.+....              
T Consensus       261 l~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~--------------  326 (614)
T PRK08180        261 WNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA--------------  326 (614)
T ss_pred             hHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch--------------
Confidence            999999865 567899999999875  23   3467889999999999999999999887432110              


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH----hC--CceecccCcchhcchhc
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG--CQVMEGYGMTETSCIIS  453 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g--~~l~~~YG~TE~~~~~~  453 (698)
                                              ..+...++++|.+++||+++++++.+++.+.    +|  ++++++||+||++++++
T Consensus       327 ------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~  382 (614)
T PRK08180        327 ------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSAT  382 (614)
T ss_pred             ------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceE
Confidence                                    0111223689999999999999999988874    33  67999999999987766


Q ss_pred             ccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEE-
Q 005406          454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW-  532 (698)
Q Consensus       454 ~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~-  532 (698)
                      ........++++|+|++|++++|+|.        +   ..|||+++|++++.|||++|+.|++.|+.+|||+|||+|++ 
T Consensus       383 ~~~~~~~~~~svG~p~pg~~v~i~d~--------~---~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~  451 (614)
T PRK08180        383 FTTGPLSRAGNIGLPAPGCEVKLVPV--------G---GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV  451 (614)
T ss_pred             ecccccCCCCcccCccCCcEEEEecC--------C---CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEec
Confidence            55444566789999999999999983        1   26999999999999999999999999988999999999999 


Q ss_pred             ---ecCCcEEEEccCCCeEecCCceeec--chHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCc
Q 005406          533 ---LPGGRLKIIDRKKNIFKLAQGEYVA--PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKF  607 (698)
Q Consensus       533 ---~~~G~l~i~GR~~d~ikls~G~~v~--p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~  607 (698)
                         |++|+|+|+||+||+||+++|++|+  |.|+|.++.+||.|.+|+|+|.+ .+.++|+|+++++....|+...  ..
T Consensus       452 ~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~-~~~~~a~V~~~~~~~~~~~~~~--~~  528 (614)
T PRK08180        452 DPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD-RDEIGLLVFPNLDACRRLAGLL--AD  528 (614)
T ss_pred             CCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC-CCceEEEEEcCHHHHHHHHhhc--cc
Confidence               5689999999999999988899777  78889999999999999999987 4578899999998777776554  11


Q ss_pred             ccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhcc
Q 005406          608 EDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAEL  685 (698)
Q Consensus       608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~  685 (698)
                      ....+.++.+++++.+.+.|.++.+ .....+++|++|.+++++|+..+|.+|++||++|+++.+.|+++|++||++.
T Consensus       529 ~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~~  605 (614)
T PRK08180        529 ASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYADE  605 (614)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCCC
Confidence            2344556788899999998888764 4455677999999999999999999999999999999999999999999864

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.2e-76  Score=656.57  Aligned_cols=506  Identities=30%  Similarity=0.453  Sum_probs=422.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...++.+++.++++.+|+++|+.+.   +..    ..+||+||+++++++|++|++.|+++||+|+|+++|+++++++++
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~   81 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFL   81 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4678999999999999999999875   221    159999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++||||.+...++.++++++++++++++......+.......+....+...........          .++
T Consensus        82 a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  151 (534)
T COG0318          82 AALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP----------ITL  151 (534)
T ss_pred             HHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEeccccccccc----------ccH
Confidence            9999999999999999999999999999999999998844444444433333332222221110000          245


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc--cCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--FYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      +++..............+++++++|+|||||||.||||++||+|++.+.......+.  +++.|++++++|++|++|+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~  231 (534)
T COG0318         152 EALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIV  231 (534)
T ss_pred             HHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHH
Confidence            555333222222222367999999999999999999999999999999888877777  899999999999999999998


Q ss_pred             HHH-HHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          315 QIV-SVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       315 ~~~-~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      .+. .++.|+++++.+   +++..++..+.++++|++.++|+++..+++.....-                         
T Consensus       232 ~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-------------------------  286 (534)
T COG0318         232 GLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-------------------------  286 (534)
T ss_pred             HHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-------------------------
Confidence            655 589999999987   799999999999999999999999999876321100                         


Q ss_pred             CCCchhhHHHHHHHHHHHcCC-cEEEEEecCCCCCHHHHHHHHHHhC-CceecccCcchhcchhcccCCCC--CCCCCcc
Q 005406          391 QTPSKMWDRLVFNKIRERLGG-RVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGD--NLSGHVG  466 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~-~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG  466 (698)
                                       .... ++|.+++||+++++++++.+++.++ ..++++||+||+++.++.....+  ...+++|
T Consensus       287 -----------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  349 (534)
T COG0318         287 -----------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVG  349 (534)
T ss_pred             -----------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCccc
Confidence                             0002 4999999999999999999999998 47999999999998777766655  4678889


Q ss_pred             CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      .|+|+++++|+|.++....+    ++.|||+++||+++.|||++|+.|.+.|+.+|||+|||+|++|++|+++|+||.||
T Consensus       350 ~~~pg~~v~Ivd~~~~~~~p----g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd  425 (534)
T COG0318         350 RPLPGVEVRIVDPDGGEVLP----GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKD  425 (534)
T ss_pred             ccCCCcEEEEEeCCCCccCC----CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccce
Confidence            99999999999965543333    34899999999999999999999999996679999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      +|+. +|++|+|.|||+++.+||.|.+|+|+|.++   ++.++|+|++++...        .               ...
T Consensus       426 ~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~--------~---------------~~~  481 (534)
T COG0318         426 LIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD--------A---------------ELT  481 (534)
T ss_pred             EEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC--------C---------------CCC
Confidence            9995 999999999999999999999999999664   689999999987420        0               012


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .++|.++++ ..++.|++|+.|++++++|      +|++||++|++|++.+.+
T Consensus       482 ~~~i~~~~~-~~l~~~~~P~~v~~v~~lP------~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         482 AEELRAFLR-KRLALYKVPRIVVFVDELP------RTASGKIDRRALREEYRA  527 (534)
T ss_pred             HHHHHHHHH-hhhhcccCCeEEEEeCCCC------CCCchhhhHHHHHHHHHh
Confidence            566677775 5899999999999999999      999999999999999987

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-75  Score=663.29  Aligned_cols=563  Identities=22%  Similarity=0.314  Sum_probs=445.4

Q ss_pred             CcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCC
Q 005406           56 WNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGL  135 (698)
Q Consensus        56 ~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv  135 (698)
                      ++.+|....+...-.++++.+...|+.++|+++++++||++|+.+.   +...+.++.+||+||.++++++|++|.+.|+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv  102 (624)
T PRK12582         26 ISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGL  102 (624)
T ss_pred             eEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCC
Confidence            4455554333323334555667889999999999999999999764   3212346789999999999999999999999


Q ss_pred             CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCH-----HHHHHHHhhccceEEEecccc-hHHHHhhhhcCCce
Q 005406          136 QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP-----DAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSV  209 (698)
Q Consensus       136 ~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~-----~~l~~il~~~~~~~v~~~~~~-~~~~~~~~~~~~~~  209 (698)
                      ++||+|+++++|+++|+++++||+++|++++|+++.++.     +++.+++++++++++|++... .......... ...
T Consensus       103 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~  181 (624)
T PRK12582        103 DPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV  181 (624)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc
Confidence            999999999999999999999999999999999999885     899999999999999998642 2222222211 122


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCC--CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHh
Q 005406          210 HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG  287 (698)
Q Consensus       210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~  287 (698)
                      + ++.++....         ......+.++........  .......++++++|+|||||||.||||++||+++++.+..
T Consensus       182 ~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~  251 (624)
T PRK12582        182 T-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM  251 (624)
T ss_pred             e-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH
Confidence            3 333332110         111245666554322110  0112346799999999999999999999999999887765


Q ss_pred             cccccccCC---CcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeCC--C---hhhHHHHHhhhcCcEEeechHHHHHHH
Q 005406          288 FSLMVQFYP---SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQG--D---NLKLMDDLAVLKPTIFPSVPRLYNRIY  358 (698)
Q Consensus       288 ~~~~~~~~~---~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~~--~---~~~l~~~i~~~~~t~~~~~P~~~~~l~  358 (698)
                      .........   .+++++++|++|.+++.. .+.+++.|+++++.+.  +   ...+++.++++++|+++++|+++..|.
T Consensus       252 ~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~  331 (624)
T PRK12582        252 QEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLA  331 (624)
T ss_pred             HHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHH
Confidence            544444433   589999999999999876 4567899999988652  2   345677889999999999999999887


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh---
Q 005406          359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---  435 (698)
Q Consensus       359 ~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---  435 (698)
                      +.+...    +                                  ..+....+++|.+++||+++++++.+++.+.+   
T Consensus       332 ~~~~~~----~----------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~  373 (624)
T PRK12582        332 EAMEKD----D----------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRT  373 (624)
T ss_pred             HHHhhC----H----------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhh
Confidence            642210    0                                  00111125899999999999999999998753   


Q ss_pred             ---CCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChh
Q 005406          436 ---GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV  512 (698)
Q Consensus       436 ---g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~  512 (698)
                         +++++++||+||++.+++.........+++|+|+||+++++++        .+   +.|||+|+|++++.|||++|+
T Consensus       374 ~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G---~~GEl~vrg~~v~~GY~~~p~  442 (624)
T PRK12582        374 TGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VG---DKYEVRVKGPNVTPGYHKDPE  442 (624)
T ss_pred             cCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CC---CceEEEEECCcccccccCCcc
Confidence               3689999999999876654333445678999999999999975        22   379999999999999999999


Q ss_pred             hhcccccCCCceecCcEEEE-e---cCCcEEEEccCCCeEecCCceeecchHHH--HHHhcCcCceeEEEEEcCCCCeEE
Q 005406          513 QTREVIDGDGWLHTGDIGLW-L---PGGRLKIIDRKKNIFKLAQGEYVAPEKIE--NVYAKCKFVLQCFIYGDSFNSCLV  586 (698)
Q Consensus       513 ~t~~~f~~~gw~~TGDlg~~-~---~~G~l~i~GR~~d~ikls~G~~v~p~eIE--~~l~~~p~V~~~~V~g~~~~~~~v  586 (698)
                      .|++.|+.+|||+|||+|++ |   ++|+|+|+||+||+||+++|++|+|.+||  .++.+||.|.+|+|+|.+ ...+.
T Consensus       443 ~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g  521 (624)
T PRK12582        443 LTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIG  521 (624)
T ss_pred             chhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEE
Confidence            99999988999999999998 4   56999999999999998899999998885  688999999999999986 77889


Q ss_pred             EEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcc-eeeEEEEecCCCCCCCCccCcccCC
Q 005406          587 AIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFE-YAKAVTLMPEPFSVENGLLTPTFKI  665 (698)
Q Consensus       587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~-~p~~i~~~~~~p~~~~~~~T~~GKi  665 (698)
                      ++|+|+......|....+.   ...+.++++++.+.+.+.|.++.  ..++.+. +|+++++++++|+.++|.+|++||+
T Consensus       522 ~lv~p~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~  596 (624)
T PRK12582        522 LLAWPNPAACRQLAGDPDA---APEDVVKHPAVLAILREGLSAHN--AEAGGSSSRIARALLMTEPPSIDAGEITDKGYI  596 (624)
T ss_pred             EEEecCHHHHHHHHhcCCC---CHHHHhcCHHHHHHHHHHHHHHH--hhcCCChhheEEEEEeCCCCCccCCcCCccccc
Confidence            9999999887766655332   23456778899999999988885  4789998 9999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhcccC
Q 005406          666 KRPQAKERFAKAISNMYAELAT  687 (698)
Q Consensus       666 ~R~~l~~~~~~~i~~ly~~~~~  687 (698)
                      +|+++.+.|+++|++||++...
T Consensus       597 ~R~~~~~~y~~~i~~ly~~~~~  618 (624)
T PRK12582        597 NQRAVLERRAALVERLYAEPPG  618 (624)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999997543

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.5e-73  Score=609.86  Aligned_cols=494  Identities=23%  Similarity=0.306  Sum_probs=404.3

Q ss_pred             HHHHHHHHh-CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 005406           83 DNFIYAVEN-YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSA  160 (698)
Q Consensus        83 ~~l~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~lA~~~  160 (698)
                      ..++++... .+|+.|+++.   +. .+..+.+||+||.+.++++|+.|++ .|+ +||||+|++|+.+|.++++|||++
T Consensus        13 n~~dr~~~~~~~~~~aii~~---~e-~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r   87 (528)
T COG0365          13 NALDRHLEADRPDDTAIIFD---GE-DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR   87 (528)
T ss_pred             hhhhhhhhccCCCceEEEEE---cC-CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence            356666653 4789999885   32 2223889999999999999999986 678 999999999999999999999999


Q ss_pred             cCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhh--hhcCC-ceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          161 YSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSF--ISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       161 ~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~--~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      +|++.+|+.+.++++++++.+++++++++|+++.........  ..... .+..+++....           +   +.|.
T Consensus        88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~~  153 (528)
T COG0365          88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWYD  153 (528)
T ss_pred             cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccHH
Confidence            999999999999999999999999999999987654432211  10000 00003332221           1   5677


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc-ccccccCCCcEEEEcCChhhHHHHHH-H
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF-SLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (698)
                      ++...... ..+..+.+++|+++|+|||||||+||||+++|++++...... ...+.+.++|++++..++.|++|... .
T Consensus       154 ~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v  232 (528)
T COG0365         154 EAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSV  232 (528)
T ss_pred             HHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHH
Confidence            77654432 233444789999999999999999999999999776655433 34577789999999999999999998 7


Q ss_pred             HHHHHhCcEEEEeCC----ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005406          316 IVSVYYGVAVGFYQG----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (698)
Q Consensus       316 ~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (698)
                      +.+|..|++++++.+    ++..+++.|+++++|.+++.|+.++.|.+...                             
T Consensus       233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-----------------------------  283 (528)
T COG0365         233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-----------------------------  283 (528)
T ss_pred             HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------------
Confidence            889999999999873    27889999999999999999999999986311                             


Q ss_pred             CCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCC
Q 005406          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA  471 (698)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~  471 (698)
                                   .++...++||.+.+.||||++++++++.+.+|++|.+.||+||++++.....+ ...+++.|.|+||
T Consensus       284 -------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG  349 (528)
T COG0365         284 -------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPG  349 (528)
T ss_pred             -------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCC
Confidence                         01112268999999999999999999999999999999999999955554444 5556666999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCC--CccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      +++.++|.+ ++.++.+   . |+|+++.+  ++++|||+||+.+.+.|-+. ||+|||.+++|+||+++|+||.||+||
T Consensus       350 ~~~~vvdd~-g~~~~~~---~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~  423 (528)
T COG0365         350 YAVRRVDDE-GNPVPPG---V-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIK  423 (528)
T ss_pred             ceeEEECCC-CCcCCCC---c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEe
Confidence            999999944 5544433   4 99999986  99999999999999988433 999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + .|++|.|.|||++|.+||.|.||+|+|.++   ++.++|||++.++.          .          ..   .+.++
T Consensus       424 v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~----------~----------~~---~L~~e  479 (528)
T COG0365         424 V-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGV----------E----------PN---ELAEE  479 (528)
T ss_pred             c-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCC----------C----------hH---HHHHH
Confidence            7 699999999999999999999999999765   46799999999853          1          11   56778


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      |++++++ .+.++..|+.|.+++++|      +|.||||.|+.|++.+.+
T Consensus       480 i~~~vr~-~~~~~~~p~~i~fv~~LP------kT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         480 IRRHVAR-NIGPHAIPRKIRFVDELP------KTASGKIQRRLLRKILHK  522 (528)
T ss_pred             HHHHHHh-ccCcccCCceEEEecCCC------CCCcccHHHHHHHHHHhh
Confidence            8888764 444599999999999999      999999999999998874

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-72  Score=642.19  Aligned_cols=529  Identities=17%  Similarity=0.184  Sum_probs=411.1

Q ss_pred             CCCCCCHHHHHHHHHHh--CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH
Q 005406           75 HPEIGTLHDNFIYAVEN--YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL  152 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~  152 (698)
                      ....++..++|+++++.  +||++|+++.   ....+..+.+||+||+++++++|++|+++|+++||+|+|+++|++||+
T Consensus        55 ~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~  131 (647)
T PTZ00237         55 GGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPL  131 (647)
T ss_pred             CCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            34566778889888765  7999999874   221123478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc---------chHHHHhhhhcCC-ceeEEEEeCCCCC--
Q 005406          153 IVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ---------TLNTLLSFISEIP-SVHLIVVVGGKDE--  220 (698)
Q Consensus       153 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~---------~~~~~~~~~~~~~-~~~~ii~~~~~~~--  220 (698)
                      +++|||+++|++++|+++.++.+++.++|++++++++|+++.         ....+.++..... ....++.+.....  
T Consensus       132 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  211 (647)
T PTZ00237        132 IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITS  211 (647)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccc
Confidence            999999999999999999999999999999999999999752         2222333322111 1234444321110  


Q ss_pred             -C-CC---CCCCCCCceEeeHHHHHhcCC----CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHH-HHHHHHhccc
Q 005406          221 -H-LP---SLPSTSGVKLISYLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGN-LISNVAGFSL  290 (698)
Q Consensus       221 -~-~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~  290 (698)
                       . ..   ......  ....|++++....    ..........++++++|+|||||||.||||+++|++ +.+.......
T Consensus       212 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~  289 (647)
T PTZ00237        212 ESDLKKIETIPTIP--NTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS  289 (647)
T ss_pred             ccccccccccCCCc--ccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH
Confidence             0 00   000001  1245777664321    111122345789999999999999999999999998 5443333334


Q ss_pred             ccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCC-------hhhHHHHHhhhcCcEEeechHHHHHHHHHHHH
Q 005406          291 MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGD-------NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITN  363 (698)
Q Consensus       291 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~-------~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~  363 (698)
                      .+....+|+++++.|++|+++....+.+++.|+++++++++       +..+++.|+++++|++.++|+++..|.+....
T Consensus       290 ~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  369 (647)
T PTZ00237        290 IIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE  369 (647)
T ss_pred             hcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence            45677889999999999998776788899999999998753       57899999999999999999999988763110


Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceeccc
Q 005406          364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGY  443 (698)
Q Consensus       364 ~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~Y  443 (698)
                      ...                             .        ......++||.+++||+++++++.+++++.+|+++++.|
T Consensus       370 ~~~-----------------------------~--------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~y  412 (647)
T PTZ00237        370 ATI-----------------------------I--------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGY  412 (647)
T ss_pred             ccc-----------------------------c--------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeee
Confidence            000                             0        000011589999999999999999999998999999999


Q ss_pred             CcchhcchhcccCCC-CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CccccccCChhhhccccc
Q 005406          444 GMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVID  519 (698)
Q Consensus       444 G~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~~~f~  519 (698)
                      |+||++++++..... ....+++|+|+|+++++|+| +++..++.++   .|||+++||   +++.|||++++.+++.|+
T Consensus       413 G~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~  488 (647)
T PTZ00237        413 GQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFS  488 (647)
T ss_pred             chHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHh
Confidence            999998665443322 23348999999999999999 4666665554   899999986   789999999999998885


Q ss_pred             C-CCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhH
Q 005406          520 G-DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDV  595 (698)
Q Consensus       520 ~-~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~  595 (698)
                      . +|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++   ++.++|+|+++++.
T Consensus       489 ~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~  567 (647)
T PTZ00237        489 KFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQ  567 (647)
T ss_pred             CCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCc
Confidence            4 799999999999999999999999999997 799999999999999999999999999764   57899999987531


Q ss_pred             HHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          596 LKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      .       +..       . +   .+.+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|+.|++.+.
T Consensus       568 ~-------~~~-------~-~---~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~  622 (647)
T PTZ00237        568 S-------NQS-------I-D---LNKLKNEINNIIT-QDIESLAVLRKIIIVNQLP------KTKTGKIPRQIISKFLN  622 (647)
T ss_pred             c-------ccC-------C-C---HHHHHHHHHHHHH-hhcCccccCcEEEEcCCCC------CCCCccEeHHHHHHHHc
Confidence            0       000       0 0   1244667777776 6899999999999999999      99999999999998864

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.9e-72  Score=632.37  Aligned_cols=524  Identities=22%  Similarity=0.270  Sum_probs=412.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..-|+.++|++.++++|+++|+...   +      +.+||+||+++++++|++|.++|+++||+|+|+++|+++|+++++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3468999999999999999998542   1      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhh-hcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      ||+++|++++||++.++.+++.++++++++++++++........... ..++.++.++..++......    .....+..
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence            99999999999999999999999999999999999876533222221 23455555555443210000    00001122


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (698)
                      .+++...............++++++|+|||||||.||||+++|++++.........+++.++|++++++|++|++++...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~  231 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA  231 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence            22222111111111123467999999999999999999999999998877666666788999999999999999999888


Q ss_pred             HHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCc
Q 005406          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (698)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (698)
                      +.++..|+++++.+ +++..+++.++++++|++.++|+++..|.+......                             
T Consensus       232 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------  282 (563)
T PLN02860        232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM-----------------------------  282 (563)
T ss_pred             HHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----------------------------
Confidence            88999999998877 799999999999999999999999998876321100                             


Q ss_pred             hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC--------------
Q 005406          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--------------  459 (698)
Q Consensus       395 ~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~--------------  459 (698)
                                 ......++|.+++||+++++++.+.|++.+ ++++++.||+||+++.++.....+              
T Consensus       283 -----------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (563)
T PLN02860        283 -----------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN  351 (563)
T ss_pred             -----------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhc
Confidence                       000115899999999999999999999888 789999999999986554322111              


Q ss_pred             ---------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEE
Q 005406          460 ---------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG  530 (698)
Q Consensus       460 ---------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg  530 (698)
                               ....++|+|+++++++|++.+         +++.|||+++|++++.|||++|+.|++.|+.+|||+|||+|
T Consensus       352 ~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~---------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~  422 (563)
T PLN02860        352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDE---------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG  422 (563)
T ss_pred             ccccccccccCCcccCCccCCcEEEEecCC---------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceE
Confidence                     112378999999999999843         23589999999999999999999999999889999999999


Q ss_pred             EEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCc
Q 005406          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKF  607 (698)
Q Consensus       531 ~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~  607 (698)
                      ++|+||+++|+||+||+||+ +|++|+|.|||+++.+||+|.+|+|++.++   ++.++|+|++.++.  .|...     
T Consensus       423 ~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~-----  494 (563)
T PLN02860        423 WIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGW--IWSDN-----  494 (563)
T ss_pred             EEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcc--ccccc-----
Confidence            99999999999999999997 899999999999999999999999999654   47899999987642  00000     


Q ss_pred             ccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEe-cCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406          608 EDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLM-PEPFSVENGLLTPTFKIKRPQAKERFAKAISN  680 (698)
Q Consensus       608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~-~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~  680 (698)
                       ........   .....++|++++++.+|+.|++|+.|+++ +++|      +|++||++|++|++++.+.++.
T Consensus       495 -~~~~~~~~---~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP------~t~~GKi~r~~L~~~~~~~~~~  558 (563)
T PLN02860        495 -EKENAKKN---LTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFP------LTTTGKIRRDEVRREVLSHLQS  558 (563)
T ss_pred             -cchhhccc---ccccHHHHHHHHhhCcccccccceEEEEEecCCC------CCcccchhHHHHHHHHHHHHhc
Confidence             00000000   01224567777764579999999998765 6799      9999999999999988766544

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.4e-71  Score=634.67  Aligned_cols=521  Identities=17%  Similarity=0.189  Sum_probs=408.0

Q ss_pred             CCCHHHHHHHHHH-hCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVE-NYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .+..+++|+++++ .+|+++|+++.   ....+..+.+||+||.+++.++|++|++.|+++||+|+|+++|++|+++++|
T Consensus        87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l  163 (666)
T PLN02654         87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML  163 (666)
T ss_pred             eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3445788888876 48999999874   2222345789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchH---------HHHhhhhcC----CceeEEEEeCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN---------TLLSFISEI----PSVHLIVVVGGKDEHLP  223 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~---------~~~~~~~~~----~~~~~ii~~~~~~~~~~  223 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++.....         .+.......    .....++..+.......
T Consensus       164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
T PLN02654        164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR  243 (666)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence            99999999999999999999999999999999999875321         111111111    11122222222110000


Q ss_pred             CCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHH-HHhcccccccCCCcEEEE
Q 005406          224 SLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN-VAGFSLMVQFYPSDIYMS  302 (698)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~  302 (698)
                      ............|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. .......++++++|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~  322 (666)
T PLN02654        244 EDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWC  322 (666)
T ss_pred             cccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            000000001234556543221 112223357899999999999999999999999997643 344455678899999999


Q ss_pred             cCChhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHH
Q 005406          303 YLPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLF  376 (698)
Q Consensus       303 ~~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~  376 (698)
                      ++|++|+++... .+.+|+.|+++++++     .++..+++.|+++++|+++++|+++..|.+......           
T Consensus       323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------  391 (666)
T PLN02654        323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV-----------  391 (666)
T ss_pred             cCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc-----------
Confidence            999999999766 678899999999986     378899999999999999999999998876311000           


Q ss_pred             HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhc
Q 005406          377 TAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIIS  453 (698)
Q Consensus       377 ~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~  453 (698)
                                        .-++           .++||.+++||+++++++.+++.+.+|   +++.+.||+||+++...
T Consensus       392 ------------------~~~~-----------l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~  442 (666)
T PLN02654        392 ------------------TRHS-----------RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI  442 (666)
T ss_pred             ------------------ccCC-----------hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence                              0000           148999999999999999999998887   78999999999987655


Q ss_pred             ccCCC--CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecC
Q 005406          454 AIDKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTG  527 (698)
Q Consensus       454 ~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TG  527 (698)
                      ...+.  ...++++|.|++|++++|+| ++++.++.+   ..|||++++  |+++.|||+|++.+.+.+.  .+|||+||
T Consensus       443 ~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~---~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  518 (666)
T PLN02654        443 TPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGE---CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSG  518 (666)
T ss_pred             ccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCC---CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeC
Confidence            44332  24678999999999999999 455555433   379999999  7899999999999887652  37999999


Q ss_pred             cEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcC
Q 005406          528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQG  604 (698)
Q Consensus       528 Dlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~  604 (698)
                      |+|++|+||+++|+||+||+||+ +|++|+|.|||+++.+||.|.+++|+|.++   ++.++|+|++.++.         
T Consensus       519 D~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~---------  588 (666)
T PLN02654        519 DGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV---------  588 (666)
T ss_pred             ceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC---------
Confidence            99999999999999999999997 799999999999999999999999999654   46899999988632         


Q ss_pred             CCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                       .        ..    +.+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|+.|++.+..
T Consensus       589 -~--------~~----~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        589 -P--------YS----EELRKSLILTVR-NQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASR  640 (666)
T ss_pred             -C--------CC----HHHHHHHHHHHH-HhCCCCcCCCEEEECCCCC------CCCCcCchHHHHHHHHcC
Confidence             0        01    234556777775 7899999999999999999      999999999999988653

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=8.9e-71  Score=629.11  Aligned_cols=517  Identities=20%  Similarity=0.240  Sum_probs=417.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .....+++|+++++.+|+++|+++.   +...++.+.+||+||++++.++|++|+++|+++||+|+++++|++++++++|
T Consensus        55 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  131 (625)
T TIGR02188        55 ELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAML  131 (625)
T ss_pred             EEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3456788888889899999999875   3223446789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcCC-ceeEEEEeCCCCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIP-SVHLIVVVGGKDEHLPSLP  226 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~  226 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.+....++ .++.+++++....... ..
T Consensus       132 A~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  210 (625)
T TIGR02188       132 ACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-WV  210 (625)
T ss_pred             HHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-cc
Confidence            999999999999999999999999999999999998653         233344444455 5666666654321110 00


Q ss_pred             CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCC
Q 005406          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p  305 (698)
                        . .....++++...... ........++++++|+|||||||.||||+++|++++.... .....+++.++|++++++|
T Consensus       211 --~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  286 (625)
T TIGR02188       211 --E-GRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTAD  286 (625)
T ss_pred             --c-cccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCC
Confidence              0 112456666554321 2233346789999999999999999999999999865543 3344568889999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      ++|+++... .+.+++.|+++++++     .++..+++.++++++|++.++|+++..|.+......              
T Consensus       287 ~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------  352 (625)
T TIGR02188       287 VGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV--------------  352 (625)
T ss_pred             chhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--------------
Confidence            999988765 678899999999986     378999999999999999999999988876311000              


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccC
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAID  456 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~  456 (698)
                                                +....++||.+++||+++++++.+++.+.++   +++++.||+||+++.++...
T Consensus       353 --------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~  406 (625)
T TIGR02188       353 --------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPL  406 (625)
T ss_pred             --------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecC
Confidence                                      0011158999999999999999999998875   78999999999987655433


Q ss_pred             CC--CCCCCCccCCCCCcEEEEEecCCCCCCC-CCCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecCcE
Q 005406          457 KG--DNLSGHVGSPNPACEIKLVDVPEMNYTS-EDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGDI  529 (698)
Q Consensus       457 ~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~-~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TGDl  529 (698)
                      +.  ...++++|+|++|++++|+| ++++.++ .+   +.|||+++|  |++++|||++++.+.+.+.  .+|||+|||+
T Consensus       407 ~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g---~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl  482 (625)
T TIGR02188       407 PGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPG---EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDG  482 (625)
T ss_pred             CCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCC---CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCce
Confidence            32  34578999999999999999 5566554 44   489999999  6899999999998877763  4789999999


Q ss_pred             EEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCC
Q 005406          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIK  606 (698)
Q Consensus       530 g~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~  606 (698)
                      |++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++   ++.++|+|++.++.          .
T Consensus       483 ~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~----------~  551 (625)
T TIGR02188       483 ARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY----------E  551 (625)
T ss_pred             EEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC----------C
Confidence            999999999999999999997 799999999999999999999999999653   57899999987642          0


Q ss_pred             cccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          607 FEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                              .+    +.+.++|+++++ .+|+.+++|+.|++++++|      +|++||++|+.|++.+.
T Consensus       552 --------~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~r~~l~~~~~  601 (625)
T TIGR02188       552 --------PD----DELRKELRKHVR-KEIGPIAKPDKIRFVPGLP------KTRSGKIMRRLLRKIAA  601 (625)
T ss_pred             --------CC----HHHHHHHHHHHH-hhcCCCccCcEEEECCCCC------CCCCccchHHHHHHHHc
Confidence                    01    124566777775 7899999999999999999      99999999999998864

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.4e-71  Score=620.97  Aligned_cols=494  Identities=22%  Similarity=0.275  Sum_probs=410.9

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.++|++.++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999753   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.+++++++++++|++.+....+.......+.+..++.......       .....+.++++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  192 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD  192 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence            99999999999999999999999999999999998776665554444444444433222110       01123456777


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (698)
                      +.......   ..+..+++.++++|||||||.||||+++|+++++.+......+++.++|++++.+|++|.+++...+.+
T Consensus       193 ~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~  269 (549)
T PRK07788        193 LIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA  269 (549)
T ss_pred             HhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence            76543221   122346788999999999999999999999999988877777888899999999999999999888889


Q ss_pred             HHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      +..|+++++.. +++..+++.++++++|++.++|+++..+.+.......                               
T Consensus       270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------------  318 (549)
T PRK07788        270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-------------------------------  318 (549)
T ss_pred             HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------------
Confidence            99999998876 7999999999999999999999999988763211000                               


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEE
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL  476 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i  476 (698)
                               ....+++|.+++||+++++++.+++.+.+++.+++.||+||++..+...... ...++++|+|+++++++|
T Consensus       319 ---------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  389 (549)
T PRK07788        319 ---------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI  389 (549)
T ss_pred             ---------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence                     0001589999999999999999999998999999999999998655433221 245678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceee
Q 005406          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (698)
Q Consensus       477 ~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v  556 (698)
                      +| +++..++.+.   .|||+++|++++.||+++++.  . + .+|||+|||+|++|++|.++|+||.||+||+ +|++|
T Consensus       390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v  460 (549)
T PRK07788        390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENV  460 (549)
T ss_pred             EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEE
Confidence            99 5556555554   899999999999999998875  2 2 4799999999999999999999999999996 89999


Q ss_pred             cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE  633 (698)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  633 (698)
                      +|.+||+++.+||+|.+++|++.++   ++.++|+|+++++.        ..+                 .++|+++++ 
T Consensus       461 ~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~~~-----------------~~~l~~~~~-  514 (549)
T PRK07788        461 FPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA--------ALD-----------------EDAIKDYVR-  514 (549)
T ss_pred             CHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC--------CCC-----------------HHHHHHHHH-
Confidence            9999999999999999999998654   46789999987632        111                 355666665 


Q ss_pred             CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          634 GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       634 ~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      .+|+.|++|+.|++++++|      +|++||++|++|++
T Consensus       515 ~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  547 (549)
T PRK07788        515 DNLARYKVPRDVVFLDELP------RNPTGKVLKRELRE  547 (549)
T ss_pred             HhhhcCCCCcEEEEeCCCC------CCCCcCEeHHHhhc
Confidence            6899999999999999999      99999999999975

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.3e-70  Score=621.43  Aligned_cols=523  Identities=22%  Similarity=0.291  Sum_probs=418.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|++++|.+.++++|+++|+.+... .+.....+++||+||.+++.++|++|+++|+++|++|+++++|+++|++++|
T Consensus        23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            356899999999999999999987411 1112345789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc-----hHHHHhhhhcCCceeEEEEeCCCCCCCC--CC----
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLP--SL----  225 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~~~~~--~~----  225 (698)
                      ||+++| +++|+++.++++++.+++++++++++|++...     ...+.......+.++.++.++.......  ..    
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence            999999 56999999999999999999999999997543     3445455556677777777654321000  00    


Q ss_pred             -CCCCCceEeeHHHHHhcCCCCC-CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEc
Q 005406          226 -PSTSGVKLISYLQLQSQGCSSP-QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSY  303 (698)
Q Consensus       226 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  303 (698)
                       ....+..+..|.+.+....... .......++++++|+|||||||.||||++||+++++........+++.++|++++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~  260 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG  260 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence             0002223456666655432211 12233467999999999999999999999999999888777767788999999999


Q ss_pred             CChhhHHHHHH-HHHHHHhCcEEEEeCC----C---hhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHH
Q 005406          304 LPLAHIYERAN-QIVSVYYGVAVGFYQG----D---NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL  375 (698)
Q Consensus       304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~~----~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l  375 (698)
                      +|++|.++... .+.+++.|+++++.+.    +   ...+++.++++++|++.++|+++..+.+....            
T Consensus       261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  328 (632)
T PRK07529        261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------------  328 (632)
T ss_pred             cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------
Confidence            99999999876 6788999999998752    1   35788999999999999999999888652100            


Q ss_pred             HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhccc
Q 005406          376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI  455 (698)
Q Consensus       376 ~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  455 (698)
                                                     ....+++|.+++||+++++++.+.+++.+|++++++||+||++.+++..
T Consensus       329 -------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~  377 (632)
T PRK07529        329 -------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVN  377 (632)
T ss_pred             -------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccC
Confidence                                           0001589999999999999999999998999999999999998776655


Q ss_pred             CCC-CCCCCCccCCCCCcEEEEEecCC-CCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEe
Q 005406          456 DKG-DNLSGHVGSPNPACEIKLVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL  533 (698)
Q Consensus       456 ~~~-~~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  533 (698)
                      ... ....+++|.|+|+++++|+..++ +.+.....+++.|||+|+||+++.||++++ .+...|..+|||+|||+|++|
T Consensus       378 ~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d  456 (632)
T PRK07529        378 PPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRID  456 (632)
T ss_pred             CccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEc
Confidence            433 24678999999999999975433 322223344458999999999999999875 455666679999999999999


Q ss_pred             cCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccH
Q 005406          534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       534 ~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~  610 (698)
                      +||+++|.||.||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++   ++.++|+|++.+..        ..+    
T Consensus       457 ~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~--------~~~----  523 (632)
T PRK07529        457 ADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGA--------SAT----  523 (632)
T ss_pred             CCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCC--------CCC----
Confidence            99999999999999996 899999999999999999999999999654   57899999987632        011    


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCC-CcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLR-GFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAI  678 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~-~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i  678 (698)
                                   .++|+++++ .+|+ .+++|+.|++++++|      +|++||++|++|++.+....
T Consensus       524 -------------~~~l~~~~~-~~l~~~~~~P~~i~~v~~lP------~t~~GKi~r~~Lr~~~~~~~  572 (632)
T PRK07529        524 -------------EAELLAFAR-DHIAERAAVPKHVRILDALP------KTAVGKIFKPALRRDAIRRV  572 (632)
T ss_pred             -------------HHHHHHHHH-HhcchhccCCcEEEEecCCC------CCCCCcccHHHHHHHHHHHH
Confidence                         345566665 4565 579999999999999      99999999999999876533

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-70  Score=615.98  Aligned_cols=496  Identities=20%  Similarity=0.221  Sum_probs=396.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...++.+.|.+.++++|+++|+.+.   .     .+.+||+||.++++++|++|.+   .+||+|+|+++|+++|+++++
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~l   85 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDE---Q-----LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYF   85 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeC---C-----CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHH
Confidence            3478999999999999999998543   1     1359999999999999999987   389999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCC-ceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++.+....+.+...... ....++.+++....            ..
T Consensus        86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~  153 (539)
T PRK06334         86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS  153 (539)
T ss_pred             HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence            999999999999999999999999999999999998776555444322110 01123333321100            01


Q ss_pred             HHHHHhcCC----C-----CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCCh
Q 005406          236 YLQLQSQGC----S-----SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL  306 (698)
Q Consensus       236 ~~~~~~~~~----~-----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl  306 (698)
                      +.+....+.    .     .........++++++|+|||||||.||||++||+++.+........++++++|++++++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~  233 (539)
T PRK06334        154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP  233 (539)
T ss_pred             HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence            111100000    0     0001123568999999999999999999999999999887777667888899999999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      +|.+++.. .+.++..|+++++..  .++..+++.|+++++|++.++|+++..|.+.....                   
T Consensus       234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------  294 (539)
T PRK06334        234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ-------------------  294 (539)
T ss_pred             HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-------------------
Confidence            99999876 677899999998875  68999999999999999999999999887632110                   


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-CC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-NL  461 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-~~  461 (698)
                                             ....+++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+++...... ..
T Consensus       295 -----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  351 (539)
T PRK06334        295 -----------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKH  351 (539)
T ss_pred             -----------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCC
Confidence                                   00015899999999999999999999888 689999999999987666544332 34


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccc-ccCCCceecCcEEEEecCCcEEE
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV-IDGDGWLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~-f~~~gw~~TGDlg~~~~~G~l~i  540 (698)
                      .+++|+|+++++++|+|.+++..++.++   .|||+|+|++++.|||++++.+... ++++|||+|||+|++|++|+++|
T Consensus       352 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~  428 (539)
T PRK06334        352 ESCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL  428 (539)
T ss_pred             CCcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEE
Confidence            5689999999999999965566666655   8999999999999999999876543 24578999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCcee------EEEEEcCCCC-eEEEEEEcChhHHHHHHHHcCCCcccHHHh
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ------CFIYGDSFNS-CLVAIVAVDPDVLKDWAASQGIKFEDLEQL  613 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~------~~V~g~~~~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~  613 (698)
                      +||.||+||+ +|++|+|.|||++|.+||+|.+      ++|++.+++. .++++++....                   
T Consensus       429 ~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------------  488 (539)
T PRK06334        429 KGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTS-------------------  488 (539)
T ss_pred             EeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCC-------------------
Confidence            9999999997 8999999999999999999998      7888876543 34455543211                   


Q ss_pred             hCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          614 CNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       614 ~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                                .+++++++++..++.|++|+.|++++++|      +|++|||+|++|++....
T Consensus       489 ----------~~~~~~~l~~~~~~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        489 ----------ISEVNDILKNSKTSSILKISYHHQVESIP------MLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             ----------hHHHHHHHHhcCCcccccchheeeecccc------cccCCcccHHHHHHHHHH
Confidence                      23455666544578999999999999999      999999999999887544

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.4e-70  Score=624.68  Aligned_cols=524  Identities=16%  Similarity=0.156  Sum_probs=412.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .....+++|+++++.+|+++|+++.   +...+..+.+||+||++++.++|++|+++|+++||+|+|+++|++++++++|
T Consensus        50 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~l  126 (628)
T TIGR02316        50 RTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAML  126 (628)
T ss_pred             EeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3455678898888899999999874   3222345789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcC-CceeEEEEeCCCCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEI-PSVHLIVVVGGKDEHLPSLP  226 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~  226 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.++.... +....+++++........  
T Consensus       127 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--  204 (628)
T TIGR02316       127 ACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--  204 (628)
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc--
Confidence            999999999999999999999999999999999997642         12222222222 234455665532111000  


Q ss_pred             CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHH-HHhcccccccCCCcEEEEcCC
Q 005406          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN-VAGFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~p  305 (698)
                        .......|.++.........+.....++++++|+|||||||.||||+++|++++.. .......+++.++|++++++|
T Consensus       205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~  282 (628)
T TIGR02316       205 --IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD  282 (628)
T ss_pred             --ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence              00012456666544322122223356899999999999999999999999997644 334445578899999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      ++|+++... .+.+++.|+++++++     .++..+++.|+++++|+++++|+++..|.+.....               
T Consensus       283 ~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------  347 (628)
T TIGR02316       283 VGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------------  347 (628)
T ss_pred             CCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------------
Confidence            999998755 778899999999986     36788999999999999999999998776521000               


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-  458 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-  458 (698)
                                               .+....++||.+++||+++++++.++++..+|..+++.||+||++..++..... 
T Consensus       348 -------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~  402 (628)
T TIGR02316       348 -------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL  402 (628)
T ss_pred             -------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCC
Confidence                                     000111589999999999999999999998999999999999998544332221 


Q ss_pred             ---CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CccccccCChhhhcccc---cCCCceecCcE
Q 005406          459 ---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVI---DGDGWLHTGDI  529 (698)
Q Consensus       459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~~~f---~~~gw~~TGDl  529 (698)
                         ....+++|.|++|++++|+|.++++.++.++   .|||+++||   +++.|||++++.+.+.+   ..++||+|||+
T Consensus       403 ~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  479 (628)
T TIGR02316       403 DLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDW  479 (628)
T ss_pred             CcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCce
Confidence               2346889999999999999965677666554   899999998   57899999998877654   25789999999


Q ss_pred             EEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCC
Q 005406          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIK  606 (698)
Q Consensus       530 g~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~  606 (698)
                      |++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++++|++.+...        ..
T Consensus       480 g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~--------~~  550 (628)
T TIGR02316       480 GIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS--------AG  550 (628)
T ss_pred             EEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc--------cc
Confidence            999999999999999999997 899999999999999999999999999654   568899998875310        00


Q ss_pred             cccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          607 FEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                               +..-...+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|+.|++.+.
T Consensus       551 ---------~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~lP------~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       551 ---------DAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAALP------KTRSGKLLRRSIQALAE  603 (628)
T ss_pred             ---------cccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCCC------CCCchHHHHHHHHHHHc
Confidence                     00001234567777775 7899999999999999999      99999999999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.8e-70  Score=623.43  Aligned_cols=515  Identities=17%  Similarity=0.233  Sum_probs=414.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      ...+++|+++++++|+++|+++.   +...+..+.+||+||++++.++|++|++.|+++||+|+|+++|++++++++|||
T Consensus        67 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  143 (637)
T PRK00174         67 NVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC  143 (637)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            33567888889999999999874   221224578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch---------HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCC
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS  229 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~  229 (698)
                      +++|++++|+++.++.+++.+++++++++++|+++...         ..+.+....++.++.+++++....... .   .
T Consensus       144 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~  219 (637)
T PRK00174        144 ARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-W---V  219 (637)
T ss_pred             HHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-c---C
Confidence            99999999999999999999999999999999976532         233334444566666766654321110 0   0


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCChhh
Q 005406          230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLPLAH  308 (698)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~h  308 (698)
                      ......++++..... ...+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|
T Consensus       220 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  298 (637)
T PRK00174        220 EGRDLWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGW  298 (637)
T ss_pred             CCCcccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchH
Confidence            011245666654322 12223345789999999999999999999999999875543 3334467888999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005406          309 IYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS  382 (698)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  382 (698)
                      +.+... .+.+++.|+++++++     .++..+++.|+++++|++.++|+++..|.+......                 
T Consensus       299 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------  361 (637)
T PRK00174        299 VTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP-----------------  361 (637)
T ss_pred             hhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc-----------------
Confidence            998765 678899999999976     378899999999999999999999988876311000                 


Q ss_pred             HHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccCCC-
Q 005406          383 KKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDKG-  458 (698)
Q Consensus       383 k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~-  458 (698)
                                             .....++||.+++||+++++++.+++.+.++   +++++.||+||+++.++...+. 
T Consensus       362 -----------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  418 (637)
T PRK00174        362 -----------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA  418 (637)
T ss_pred             -----------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC
Confidence                                   0001158999999999999999999988876   7899999999998765543332 


Q ss_pred             -CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhcccc--cCCCceecCcEEEEe
Q 005406          459 -DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDIGLWL  533 (698)
Q Consensus       459 -~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f--~~~gw~~TGDlg~~~  533 (698)
                       ....+++|+|++|++++|+| +++..++.+.   .|||+++|  |++++|||++++.+.+.+  ..+|||+|||+|++|
T Consensus       419 ~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d  494 (637)
T PRK00174        419 TPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRD  494 (637)
T ss_pred             CCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEc
Confidence             24467899999999999999 5556555554   89999999  689999999999887765  357999999999999


Q ss_pred             cCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccH
Q 005406          534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       534 ~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~  610 (698)
                      +||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++|+|++.++.          .    
T Consensus       495 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~----------~----  559 (637)
T PRK00174        495 EDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGE----------E----  559 (637)
T ss_pred             CCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCC----------C----
Confidence            99999999999999997 799999999999999999999999999553   57899999987642          0    


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                          .+    +.+.++|+++++ ..|+.|++|+.|++++++|      +|++||++|++|++.+.
T Consensus       560 ----~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~  609 (637)
T PRK00174        560 ----PS----DELRKELRNWVR-KEIGPIAKPDVIQFAPGLP------KTRSGKIMRRILRKIAE  609 (637)
T ss_pred             ----CC----HHHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCCcchHHHHHHHHHc
Confidence                01    233456777775 7899999999999999999      99999999999988754

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.5e-69  Score=671.30  Aligned_cols=589  Identities=15%  Similarity=0.148  Sum_probs=436.9

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..++++|.++|++++++|+.+++++++......      ..  ++......                .++  ....+++
T Consensus       186 i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~------~~--~~~~~~~~----------------~~~--~~~~~l~  239 (1389)
T TIGR03443       186 ITIVADQLAQLLSAASSNPDEPIGKVSLITPSQK------SL--LPDPTKDL----------------DWS--GFRGAIH  239 (1389)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCceecccCCCHHHH------hh--hhcccccc----------------CcC--cccCcHH
Confidence            3568899999999999999999999988764421      00  00000000                000  1135799


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|+++++++||++|+++.........+.+.+||+||.++++++|++|++.|+++|++|+|+++|+++|++++|||+++|
T Consensus       240 ~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G  319 (1389)
T TIGR03443       240 DIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAG  319 (1389)
T ss_pred             HHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence            99999999999999997641000001235679999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccc---hHHHHhhhhc----CCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---LNTLLSFISE----IPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---~~~~~~~~~~----~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      ++++|++|.++.+++.++++++++++++++...   ...+......    ...+..+...+..... .....      ..
T Consensus       320 ~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~  392 (1389)
T TIGR03443       320 ATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV-GGSLE------GG  392 (1389)
T ss_pred             cEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-ccccc------cc
Confidence            999999999999999999999999999987542   1111111110    0011111111110000 00000      00


Q ss_pred             HHHHHhcCC--CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHH
Q 005406          236 YLQLQSQGC--SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (698)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (698)
                      ..++.....  ..........+++++||+|||||||.||||+++|+++++.+.+....+++.++|++++++|++|+.++.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~  472 (1389)
T TIGR03443       393 ETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQR  472 (1389)
T ss_pred             cccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHH
Confidence            000000000  000111234689999999999999999999999999999988888888899999999999999999998


Q ss_pred             HHHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          314 NQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      .++.+++.|+++++.+    .++..+++.|+++++|+++++|+++..+......                          
T Consensus       473 ~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--------------------------  526 (1389)
T TIGR03443       473 DMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATT--------------------------  526 (1389)
T ss_pred             HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccc--------------------------
Confidence            8999999999999876    3678999999999999999999999877542100                          


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC---------
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD---------  459 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~---------  459 (698)
                                         ...++|.+++||+++++...+.+.... +++++|+||+||++.+++......         
T Consensus       527 -------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~  587 (1389)
T TIGR03443       527 -------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLK  587 (1389)
T ss_pred             -------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhh
Confidence                               014899999999999999998887754 789999999999987665432211         


Q ss_pred             --CCCCCccCCCCCcEEEEEecCC-CCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc-----------------
Q 005406          460 --NLSGHVGSPNPACEIKLVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-----------------  519 (698)
Q Consensus       460 --~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-----------------  519 (698)
                        ....++|+|+++++++|+|.++ ...++.|   ..|||||+||++++||+++|+.|+++|.                 
T Consensus       588 ~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G---~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~  664 (1389)
T TIGR03443       588 NLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVG---EVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKEN  664 (1389)
T ss_pred             cccCcCcCCCccCCCEEEEECCccCCCcCCCC---CceEEEecccccchhcCCChhHhhhhccCCcccCccccccccccc
Confidence              1235799999999999999544 3444444   4899999999999999999999999883                 


Q ss_pred             -----------CCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeE
Q 005406          520 -----------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCL  585 (698)
Q Consensus       520 -----------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~  585 (698)
                                 .+|||+|||+|++++||.|+|+||.||+||+ +|+||+|.|||++|.+||.|.+++|++..+   +..+
T Consensus       665 ~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~l  743 (1389)
T TIGR03443       665 NKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTL  743 (1389)
T ss_pred             ccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEE
Confidence                       3689999999999999999999999999997 899999999999999999999999877432   4689


Q ss_pred             EEEEEcChhH--HHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCccc
Q 005406          586 VAIVAVDPDV--LKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTF  663 (698)
Q Consensus       586 va~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~G  663 (698)
                      +|+|++....  ...+....... .....++..........++++++++ .+||.|++|..|++++++|      +|++|
T Consensus       744 va~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~lP------~t~~G  815 (1389)
T TIGR03443       744 VSYIVPQDKSDELEEFKSEVDDE-ESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKLP------LNPNG  815 (1389)
T ss_pred             EEEEeccCccccccccccccccc-cccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccCC------CCCCc
Confidence            9999987321  11000000000 0000011111112234567777775 7899999999999999999      99999


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 005406          664 KIKRPQAKERFAKAISNM  681 (698)
Q Consensus       664 Ki~R~~l~~~~~~~i~~l  681 (698)
                      ||+|++|++.+..+++.+
T Consensus       816 Kidr~~L~~~~~~~~~~~  833 (1389)
T TIGR03443       816 KVDKPALPFPDTAQLAAV  833 (1389)
T ss_pred             cccHhhcCCCchhhhhhh
Confidence            999999987666655543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.2e-68  Score=602.42  Aligned_cols=503  Identities=22%  Similarity=0.304  Sum_probs=413.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|++.++.+|+++|+.+.   +...++++.+||+||+++++++|++|.+.|+++|++|+++++|+++|++++||
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la   99 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA   99 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            357999999999999999999875   32223457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc-----hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      |+++|++++|+++.++.+++.++++.+++++++++...     ...+......++.++.++.++...             
T Consensus       100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  166 (547)
T PRK13295        100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------  166 (547)
T ss_pred             HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------
Confidence            99999999999999999999999999999999998753     222333334455666666654321             


Q ss_pred             EeeHHHHHhcCC-------CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCC
Q 005406          233 LISYLQLQSQGC-------SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       233 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p  305 (698)
                      ..++.++.....       ..........++++++|+|||||||.||||+++|++++..+......+++.++|++++++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p  246 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASP  246 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecC
Confidence            123334332110       0011122346789999999999999999999999999988887777788899999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      ++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......                   
T Consensus       247 ~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------  307 (547)
T PRK13295        247 MAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-------------------  307 (547)
T ss_pred             chhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-------------------
Confidence            999998766 677899999999887 68999999999999999999999998886531100                   


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNL  461 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~  461 (698)
                                             ....+++|.+++||+++++++.+++.+.+++++++.||+||++.+++.....  ...
T Consensus       308 -----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  364 (547)
T PRK13295        308 -----------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA  364 (547)
T ss_pred             -----------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhc
Confidence                                   0011589999999999999999999988899999999999998765543322  133


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      .+++|+|+++++++|+| +++...+.++   .|||+|+|++++.||+++|+.|+..  .+|||+|||+|+++++|.+++.
T Consensus       365 ~~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~  438 (547)
T PRK13295        365 STTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRIS  438 (547)
T ss_pred             cCccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEE
Confidence            46899999999999999 4556555554   8999999999999999999999876  5789999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||.||+||+ +|++|+|.+||++|.++|+|.+++|++.++   ++.++++|++++..        ..             
T Consensus       439 gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~-------------  496 (547)
T PRK13295        439 GRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQ--------SL-------------  496 (547)
T ss_pred             eccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCC--------CC-------------
Confidence            999999997 899999999999999999999999998543   46789999987631        00             


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                          ..+++.+++++..|+.|++|+.|++++++|      +|++||++|++|++.+.+
T Consensus       497 ----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        497 ----DFEEMVEFLKAQKVAKQYIPERLVVRDALP------RTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             ----CHHHHHHHHHhccCccccCCcEEEEeccCC------CCCCccccHHHHHHHHhc
Confidence                024555565545899999999999999999      999999999999987653

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.2e-69  Score=608.15  Aligned_cols=507  Identities=20%  Similarity=0.262  Sum_probs=417.2

Q ss_pred             CCCCHHHHHHHHHH-hCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVE-NYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ....++++++++++ .+|+++|+.+.   +..  ..+.+||+||.+++.++|++|.+.|+++|++|+++++|+++|++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            34556788888887 58999999775   322  3467999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|++++|+++.++.+++.++++++++++++++.........  ..++.++.++.+++...        ......+
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~  185 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE--------EGPGTLD  185 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC--------CCcCccC
Confidence            9999999999999999999999999999999999998765443321  24556666666654321        0112245


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (698)
                      +.+++..... ..+.....++++++|+|||||||.||||+++|+++++.+......+++.++|++++..|++|.++... 
T Consensus       186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~  264 (570)
T PRK04319        186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG  264 (570)
T ss_pred             HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence            6666544322 22233456789999999999999999999999999988877777788899999999999999998765 


Q ss_pred             HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+.+++.|+++++..  +++..+++.|+++++|+++++|+++..+.+......                           
T Consensus       265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------  317 (570)
T PRK04319        265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV---------------------------  317 (570)
T ss_pred             HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence            678899999999875  689999999999999999999999998865211000                           


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPA  471 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~  471 (698)
                                   .....+++|.+++||+++++++.+++++.+|.++++.||+||+++.++..... ...++++|+|+|+
T Consensus       318 -------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g  384 (570)
T PRK04319        318 -------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG  384 (570)
T ss_pred             -------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence                         00001489999999999999999999998999999999999998765443332 3457899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      ++++|+| +++...+.+   +.|||+++|  ++++.|||++++.|++.|. +|||+|||+|+++++|+++++||.||+||
T Consensus       385 ~~~~i~d-~~~~~~~~g---~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~  459 (570)
T PRK04319        385 IEAAIVD-DQGNELPPN---RMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIK  459 (570)
T ss_pred             CEEEEEC-CCCCCCCCC---CceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEE
Confidence            9999999 444444444   589999997  8999999999999999994 89999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|++|+|.+||+++.+||.|.+++|+|.++   ++.++|+|++.++.          .        ..    +.+.++
T Consensus       460 ~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~----------~--------~~----~~~~~~  516 (570)
T PRK04319        460 T-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY----------E--------PS----EELKEE  516 (570)
T ss_pred             E-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC----------C--------CC----HHHHHH
Confidence            7 899999999999999999999999999653   47788999887632          0        01    233556


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                      |+++++ .+|+.|++|+.|++++++|      +|++||++|++|+++.
T Consensus       517 l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~  557 (570)
T PRK04319        517 IRGFVK-KGLGAHAAPREIEFKDKLP------KTRSGKIMRRVLKAWE  557 (570)
T ss_pred             HHHHHH-HhcccccCCcEEEEeCCCC------CCCchhhhHHHHHHHH
Confidence            777775 7899999999999999999      9999999999998874

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.7e-70  Score=533.29  Aligned_cols=500  Identities=21%  Similarity=0.279  Sum_probs=431.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.+++.++|+++||++|+++.     +    +.+||+||+++++++|++|+++|+++||+|.+-++|..++++++|
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F   96 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF   96 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence            3578999999999999999999653     2    449999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc-----hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      |.+++|+.+|.--|.....++.+....++++.+|++...     .....+...+.+.++.+++.++.+..          
T Consensus        97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------  166 (542)
T COG1021          97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------  166 (542)
T ss_pred             HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence            999999999999999999999999999999999988642     34456677788999999887554311          


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                        ...+..+........+..+.++++++++..+.||||.||.+..||.....++....+.+++++.+++|+.+|..|.|.
T Consensus       167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfp  244 (542)
T COG1021         167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFP  244 (542)
T ss_pred             --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCC
Confidence              112222333333344556678899999999999999999999999999988888888899999999999999999998


Q ss_pred             HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      +..  .+..++.|+++|+.+ .++...+..|+++++|+...||.+...|++.....                        
T Consensus       245 lssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~------------------------  300 (542)
T COG1021         245 LSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE------------------------  300 (542)
T ss_pred             CCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc------------------------
Confidence            886  688899999999987 79999999999999999999999998888754321                        


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC-CCCCCCCccC
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGHVGS  467 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~  467 (698)
                                        ....++||.+-+||+.+++...+++...+||.+.+.+||.|.-...+-... .+....+-|+
T Consensus       301 ------------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGr  362 (542)
T COG1021         301 ------------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGR  362 (542)
T ss_pred             ------------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCC
Confidence                              111269999999999999999999999999999999999997544332221 1233467899


Q ss_pred             CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      |+ |.-|++|+| ++++++.+|+   .|+|..|||..++|||+.|+.++.+|+.+|||+|||++++|+||+|.+.||.||
T Consensus       363 PlsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KD  438 (542)
T COG1021         363 PLSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKD  438 (542)
T ss_pred             cCCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehh
Confidence            98 789999999 6677776665   999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      +|+ ++||+|..+|||+.|..||.|.+|++++.++   ++..+|+|++.+...         +                 
T Consensus       439 QIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~---------~-----------------  491 (542)
T COG1021         439 QIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL---------R-----------------  491 (542)
T ss_pred             hhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC---------C-----------------
Confidence            999 7999999999999999999999999999765   689999999887431         1                 


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      ..+|+.++++.+|..|++|.+|.+++.+|      +|+-|||++++|++.+..
T Consensus       492 ~~qlr~~L~~~GlAa~K~PDrie~v~~~P------~T~VGKIdKk~Lr~~l~~  538 (542)
T COG1021         492 AAQLRRFLRERGLAAFKLPDRIEFVDSLP------LTAVGKIDKKALRRRLAS  538 (542)
T ss_pred             HHHHHHHHHHcchhhhcCCcceeecccCC------CcccccccHHHHHHHhhh
Confidence            45677777788999999999999999999      999999999999998764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-68  Score=598.98  Aligned_cols=512  Identities=26%  Similarity=0.376  Sum_probs=408.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...|+.++|++.++.+|+++|++..    +     +.+||+||+++++++|++|.+ .|+++|++|+|+++|+++|++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999652    1     469999999999999999997 69999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCC-------------
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-------------  222 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-------------  222 (698)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+.+..... ..+.++..+..+...             
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKH  171 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhh
Confidence            999999999999999999999999999999999999876655444433222 234444332111000             


Q ss_pred             -CCCCCC-CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc--cC-CC
Q 005406          223 -PSLPST-SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--FY-PS  297 (698)
Q Consensus       223 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~-~~  297 (698)
                       ...... .......+.+.+..+...........++++++|+|||||||.||||+++|+++...+......+.  +. ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK05677        172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCc
Confidence             000000 00012345555544332222233457899999999999999999999999999877654443332  33 34


Q ss_pred             cEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHH
Q 005406          298 DIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK  374 (698)
Q Consensus       298 d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  374 (698)
                      +++++.+|++|.+++.. .+..+..|++.++.+  .++..+++.|+++++|+++++|+++..+......           
T Consensus       252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----------  320 (562)
T PRK05677        252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF-----------  320 (562)
T ss_pred             cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc-----------
Confidence            68899999999999875 556777888777665  5888999999999999999999999877652100           


Q ss_pred             HHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcc
Q 005406          375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA  454 (698)
Q Consensus       375 l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~  454 (698)
                                                     +....+++|.+++||+++++++.+.|.+.+|+++++.||+||++.+++.
T Consensus       321 -------------------------------~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  369 (562)
T PRK05677        321 -------------------------------RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSV  369 (562)
T ss_pred             -------------------------------ccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceee
Confidence                                           0000147999999999999999999999889999999999999877665


Q ss_pred             cCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec
Q 005406          455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (698)
Q Consensus       455 ~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  534 (698)
                      .......++++|.|+++++++|+| +++..++.++   .|||+++|++++.||+++|+.|++.|+.+|||+|||+|++|+
T Consensus       370 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~  445 (562)
T PRK05677        370 NPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE  445 (562)
T ss_pred             cCccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC
Confidence            544445678899999999999999 4566666665   899999999999999999999999998899999999999999


Q ss_pred             CCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHH
Q 005406          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLE  611 (698)
Q Consensus       535 ~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~  611 (698)
                      +|.++|.||+||+||+ +|++|+|.+||+++.+||+|.+++|+|.++   ++.++++|++.+..        +.+     
T Consensus       446 ~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~--------~~~-----  511 (562)
T PRK05677        446 DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE--------TLT-----  511 (562)
T ss_pred             CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC--------CCC-----
Confidence            9999999999999997 799999999999999999999999999654   46788888866421        011     


Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       612 ~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                                  .++++++++ ..|++|++|+.|++++++|      +|++||++|++|++.+.++
T Consensus       512 ------------~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        512 ------------KEQVMEHMR-ANLTGYKVPKAVEFRDELP------TTNVGKILRRELRDEELKK  558 (562)
T ss_pred             ------------HHHHHHHHH-HhhhhccCCcEEEEeccCC------CCCcccccHHHHHHHHHHh
Confidence                        245555664 6799999999999999999      9999999999999876543

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=6.1e-68  Score=605.61  Aligned_cols=512  Identities=17%  Similarity=0.181  Sum_probs=396.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .|+.+.+.+   +.++++|+++.   +. .+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||
T Consensus        87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~  159 (652)
T TIGR01217        87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT  159 (652)
T ss_pred             eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            344444433   36789999775   22 234578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCC
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS  229 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~  229 (698)
                      +++|++++|+++.++.+++.+++++++++++|+++..         ...+.++...++.++.+++++.............
T Consensus       160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  239 (652)
T TIGR01217       160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKID  239 (652)
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccccccc
Confidence            9999999999999999999999999999999998643         3445555556677777776643221100000001


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHH-HHHhcccccccCCCcEEEEcCChhh
Q 005406          230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS-NVAGFSLMVQFYPSDIYMSYLPLAH  308 (698)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h  308 (698)
                        ....|+++...............++++++|+|||||||.||||+++|++++. ........+++.++|++++++|+.|
T Consensus       240 --~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  317 (652)
T TIGR01217       240 --GALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW  317 (652)
T ss_pred             --CcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcch
Confidence              1246777765422211222345679999999999999999999999999654 3444444578899999999999999


Q ss_pred             HHHHHHHHHHHHhCcEEEEeCC-----ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          309 IYERANQIVSVYYGVAVGFYQG-----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       309 ~~~~~~~~~~l~~G~~~~~~~~-----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      ++. ...+.+++.|++++++++     ++..+++.++++++|++..+|.++..+....                      
T Consensus       318 ~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----------------------  374 (652)
T TIGR01217       318 MMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAG----------------------  374 (652)
T ss_pred             hhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcC----------------------
Confidence            864 335578999999999862     6788999999999999988777765553310                      


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC--CceecccCcchhcchhcccCC-CCC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG--CQVMEGYGMTETSCIISAIDK-GDN  460 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g--~~l~~~YG~TE~~~~~~~~~~-~~~  460 (698)
                             ..+...++           .++||.+++||+++++++.+++.+.++  +.+.+.||+||+++......+ ...
T Consensus       375 -------~~~~~~~~-----------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~  436 (652)
T TIGR01217       375 -------VHPARTHD-----------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPV  436 (652)
T ss_pred             -------CCccccCC-----------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCC
Confidence                   00000011           158999999999999999999988775  457799999997543332222 224


Q ss_pred             CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC--CccccccCChhhhc---cccc-CCCceecCcEEEEec
Q 005406          461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTR---EVID-GDGWLHTGDIGLWLP  534 (698)
Q Consensus       461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~~~~GY~~~~~~t~---~~f~-~~gw~~TGDlg~~~~  534 (698)
                      ..+++|.|.+|++++|+| ++++.+ .   ++.|||+++||  +++.|||++++.|+   ..|. .+|||+|||+|++|+
T Consensus       437 ~~g~~g~p~~g~~v~ivd-~~g~~~-~---g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~  511 (652)
T TIGR01217       437 HIGEIQAPGLGTAVQSWD-PEGKPV-T---GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP  511 (652)
T ss_pred             cCCccCCCcCCCceEEEC-CCCCCC-C---CCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence            468899999999999999 455544 2   35899999996  68999999998764   2232 378999999999999


Q ss_pred             CCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHH
Q 005406          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLE  611 (698)
Q Consensus       535 ~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~  611 (698)
                      ||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++   ++.++|+|++.++.          +     
T Consensus       512 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~----------~-----  575 (652)
T TIGR01217       512 RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA----------T-----  575 (652)
T ss_pred             CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCC----------C-----
Confidence            9999999999999996 899999999999999999999999999654   47899999987632          0     


Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       612 ~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                         .+    +.+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|+.|++.+.
T Consensus       576 ---~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       576 ---LD----DALLDRIKRTIR-AGLSPRHVPDEIIEVPGIP------HTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             ---CC----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccChHHHHHHHHc
Confidence               01    233566777775 7899999999999999999      99999999999998864

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.6e-68  Score=606.54  Aligned_cols=523  Identities=18%  Similarity=0.182  Sum_probs=409.6

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      .+..+++|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  128 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA  128 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            344688898988899999999874   22223457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcC-CceeEEEEeCCCCCCCCCCCC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEI-PSVHLIVVVGGKDEHLPSLPS  227 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~  227 (698)
                      |+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++.... +....+++++.......    
T Consensus       129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~----  204 (629)
T PRK10524        129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA----  204 (629)
T ss_pred             HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC----
Confidence            99999999999999999999999999999999997642         22333333222 23345555543211100    


Q ss_pred             CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCCh
Q 005406          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLPL  306 (698)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl  306 (698)
                      ........+.++.........+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  284 (629)
T PRK10524        205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDI  284 (629)
T ss_pred             cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCC
Confidence            00011235666554322212222235678999999999999999999999999764443 33344678899999999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (698)
                      +|.++... ++.+++.|+++++++     .++..+++.++++++|++.++|+++..+.+......               
T Consensus       285 ~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------  349 (629)
T PRK10524        285 GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL---------------  349 (629)
T ss_pred             CeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc---------------
Confidence            99988654 678899999999876     367889999999999999999999987755210000               


Q ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC---
Q 005406          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK---  457 (698)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---  457 (698)
                                               +....+++|.+++||+++++++.+++.+.+++++++.||+||++..+.....   
T Consensus       350 -------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  404 (629)
T PRK10524        350 -------------------------RKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVE  404 (629)
T ss_pred             -------------------------cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcc
Confidence                                     0000158999999999999999999999899999999999999853332222   


Q ss_pred             -CCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CccccccCChhhhcccc---cCCCceecCcEE
Q 005406          458 -GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVI---DGDGWLHTGDIG  530 (698)
Q Consensus       458 -~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg  530 (698)
                       .....+++|.|+++++++|+|.+++..++.+.   .|||+++||   +++.|||++++.+.+.+   ..+|||+|||+|
T Consensus       405 ~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~  481 (629)
T PRK10524        405 DRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWG  481 (629)
T ss_pred             cCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcE
Confidence             12346889999999999999954666665554   899999998   57899999998876643   146899999999


Q ss_pred             EEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCc
Q 005406          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKF  607 (698)
Q Consensus       531 ~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~  607 (698)
                      ++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++++|++.+...        .  
T Consensus       482 ~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~--------~--  550 (629)
T PRK10524        482 IRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS--------L--  550 (629)
T ss_pred             EEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCc--------c--
Confidence            99999999999999999997 799999999999999999999999999654   468899999876320        0  


Q ss_pred             ccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          608 EDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                             .+.+....+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|+.|++.+.
T Consensus       551 -------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        551 -------ADREARLALEKEIMALVD-SQLGAVARPARVWFVSALP------KTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             -------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCCC------CCCCcchHHHHHHHHHc
Confidence                   011122345667777775 7899999999999999999      99999999999998753

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8e-68  Score=607.32  Aligned_cols=511  Identities=18%  Similarity=0.198  Sum_probs=401.3

Q ss_pred             CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      |+.+.+.++  .+|+++|+++.   +. .+..+.+||+||.+++.++|++|++.|+++||+|+|+++|++++++++|||+
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~  160 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATA  160 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            454444432  58999999875   32 2446789999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCC
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG  230 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  230 (698)
                      ++|++++|+++.++.+++.+++++++++++|+++..         ...+.++...++.++.++.++........   ...
T Consensus       161 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~  237 (655)
T PRK03584        161 SLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAA---AAL  237 (655)
T ss_pred             HcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccc---ccc
Confidence            999999999999999999999999999999997642         23344444456666666666532210000   011


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHH-HHhcccccccCCCcEEEEcCChhhH
Q 005406          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN-VAGFSLMVQFYPSDIYMSYLPLAHI  309 (698)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~h~  309 (698)
                      .....|++++..............++++++|+|||||||.||||++||++++.. +......+++.++|+++++.++.|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  317 (655)
T PRK03584        238 PGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWM  317 (655)
T ss_pred             CCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHH
Confidence            123467777653222222233456799999999999999999999999987643 4545556788999999999999998


Q ss_pred             HHHHHHHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          310 YERANQIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      +.. ..+.+++.|+++++++     .++..+++.++++++|++.++|+++..+.+...                      
T Consensus       318 ~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------  374 (655)
T PRK03584        318 MWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL----------------------  374 (655)
T ss_pred             hHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC----------------------
Confidence            653 3567899999999976     378899999999999999999999987764200                      


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh--CCceecccCcchhcchhcccCC-CCCC
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAIDK-GDNL  461 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~l~~~YG~TE~~~~~~~~~~-~~~~  461 (698)
                             .+...++           .++||.+++||+++++++.+++.+.+  ++.+.+.||+||+++......+ ....
T Consensus       375 -------~~~~~~~-----------l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~  436 (655)
T PRK03584        375 -------VPGETHD-----------LSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVY  436 (655)
T ss_pred             -------CccccCC-----------hhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcC
Confidence                   0000011           15899999999999999999999887  4789999999998654332222 2345


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC--CccccccCChhhhc--cc-c-cCCCceecCcEEEEecC
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTR--EV-I-DGDGWLHTGDIGLWLPG  535 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~~~~GY~~~~~~t~--~~-f-~~~gw~~TGDlg~~~~~  535 (698)
                      .+++|.|.+|++++|+| +++... .+   +.|||+|+||  +++.|||++++.++  +. | ..+|||+|||+|++|+|
T Consensus       437 ~g~~g~p~~g~~~~ivd-~~g~~~-~g---~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~d  511 (655)
T PRK03584        437 RGEIQCRGLGMAVEAWD-EDGRPV-VG---EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEH  511 (655)
T ss_pred             CCccCCCcCCceeEEEC-CCCCCC-CC---CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCC
Confidence            68899999999999999 455544 33   4899999996  79999999998654  11 2 12689999999999999


Q ss_pred             CcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHH
Q 005406          536 GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQ  612 (698)
Q Consensus       536 G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~  612 (698)
                      |+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++   ++.++|+|++.++.          .      
T Consensus       512 G~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~----------~------  574 (655)
T PRK03584        512 GGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGV----------T------  574 (655)
T ss_pred             CeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCC----------C------
Confidence            999999999999996 899999999999999999999999999654   57899999987632          0      


Q ss_pred             hhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          613 LCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       613 ~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                        .+    +.+.++|+++++ .+|+.|++|+.|++++++|      +|++|||+|+.|++.+.
T Consensus       575 --~~----~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        575 --LD----DALRARIRTTIR-TNLSPRHVPDKIIAVPDIP------RTLSGKKVELPVKKLLH  624 (655)
T ss_pred             --Cc----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccchHHHHHHHHc
Confidence              01    233556777775 7899999999999999999      99999999999998874

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=5.2e-68  Score=598.39  Aligned_cols=498  Identities=24%  Similarity=0.317  Sum_probs=398.3

Q ss_pred             HHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           81 LHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        81 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      +..+|.+  +++|+++|+++.   ++.    ..+||+||.++++++|++|.+ .|+++||+|+|+++|+++|++++|||+
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~  113 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL  113 (560)
T ss_pred             HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence            3445544  679999998753   211    258999999999999999999 999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHH
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (698)
                      ++|++++|++|.++.+++.+++++++++++|++.+....+...     ... ++.++......     ........|.++
T Consensus       114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~-----~~~~~~~~~~~~  182 (560)
T PLN02574        114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD-----SKRIEFPKFYEL  182 (560)
T ss_pred             HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc-----cCccCcccHHHH
Confidence            9999999999999999999999999999999987765544321     111 22222110000     000112345665


Q ss_pred             HhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----cccc-CCCcEEEEcCChhhHHHHHH
Q 005406          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQF-YPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~-~~~d~~l~~~pl~h~~~~~~  314 (698)
                      ...... ..+.....++++++|+|||||||.||||++||+++.+.+..+..    .... ...+++++.+|++|.+++..
T Consensus       183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  261 (560)
T PLN02574        183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL  261 (560)
T ss_pred             hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence            544322 11223346789999999999999999999999999887765432    1222 35689999999999999877


Q ss_pred             -HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 -QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 -~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                       .+.++..|+++++.+ +++..+++.++++++|++.++|+++..|.+.....                            
T Consensus       262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  313 (560)
T PLN02574        262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----------------------------  313 (560)
T ss_pred             HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----------------------------
Confidence             456778899998887 79999999999999999999999999887631100                            


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCC--CCCCCCCccCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK--GDNLSGHVGSPN  469 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~  469 (698)
                                   .....+++|.+++||+++++++.+.+.+.+ ++.++++||+||++.+++....  .....+++|.|.
T Consensus       314 -------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~  380 (560)
T PLN02574        314 -------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLA  380 (560)
T ss_pred             -------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeC
Confidence                         000115899999999999999999988877 7899999999999865443221  124567899999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      ++++++|+|++++..++.++   .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|++|+++|+||+||+||
T Consensus       381 ~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~  457 (560)
T PLN02574        381 PNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIK  457 (560)
T ss_pred             CCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheE
Confidence            99999999977777666665   899999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|++|+|.|||++|.+||.|.+++|++.++   ++.++++|++.++.        ..+                 .++
T Consensus       458 ~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~-----------------~~~  511 (560)
T PLN02574        458 Y-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS--------TLS-----------------QEA  511 (560)
T ss_pred             E-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC--------CCC-----------------HHH
Confidence            7 799999999999999999999999998544   46788999877531        011                 245


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      |.++++ .+|+.|++|+.|.+++++|      +|++||++|+.|++.+.+
T Consensus       512 l~~~~~-~~l~~~~~p~~v~~v~~iP------~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        512 VINYVA-KQVAPYKKVRKVVFVQSIP------KSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHH-HhccCcccCcEEEEeeccC------CCCcchhhHHHHHHHHhh
Confidence            566664 6799999999999999999      999999999999988753

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.3e-67  Score=593.05  Aligned_cols=501  Identities=25%  Similarity=0.348  Sum_probs=413.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ++..|+.+++.++++++|+++|+.+.   +.    .+.+||.||.++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus        20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~----~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~   92 (537)
T PLN02246         20 PNHLPLHDYCFERLSEFSDRPCLIDG---AT----GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF   92 (537)
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEec---CC----CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence            45678999999999999999998753   21    256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      +||+++|++++|+++.++.+++..+++.++++++|++......+...... +.+ .++.+++..           .....
T Consensus        93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~  159 (537)
T PLN02246         93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH  159 (537)
T ss_pred             HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence            99999999999999999999999999999999999988776655544321 222 344443321           01234


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----ccccCCCcEEEEcCChhhHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~  311 (698)
                      +.++..... ...+.....++++++++|||||||.||||+++|++++..+.....    .+++.++|++++.+|++|.++
T Consensus       160 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  238 (537)
T PLN02246        160 FSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS  238 (537)
T ss_pred             HHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence            555543321 122233456899999999999999999999999999887765432    467889999999999999999


Q ss_pred             HHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      +.. .+.++..|+++++.+ .++..+++.++++++|++.++|+++..|.+....                          
T Consensus       239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--------------------------  292 (537)
T PLN02246        239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV--------------------------  292 (537)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc--------------------------
Confidence            876 567899999999988 6899999999999999999999998887652100                          


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccC-----CCCCCCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDNLSG  463 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----~~~~~~~  463 (698)
                                      .....+++|.+++||+++++++.+++++.+ ++.+++.||+||++.+++...     .....++
T Consensus       293 ----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  356 (537)
T PLN02246        293 ----------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG  356 (537)
T ss_pred             ----------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence                            000014799999999999999999999987 678999999999987654321     1123567


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+|+++++++|+|++++..++.+.   .|||+++|++++.|||++++.|++.|+.+|||+|||+|+++++|+++++||
T Consensus       357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR  433 (537)
T PLN02246        357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR  433 (537)
T ss_pred             ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence            89999999999999966666666665   899999999999999999999999998899999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||+ +|++|+|.+||+.+.++|+|.+++|++.++   ++.++++|++.++.        ..               
T Consensus       434 ~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~---------------  489 (537)
T PLN02246        434 LKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS--------EI---------------  489 (537)
T ss_pred             ccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC--------CC---------------
Confidence            9999997 799999999999999999999999998543   46788898877532        00               


Q ss_pred             HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                        ..++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.
T Consensus       490 --~~~~l~~~l~-~~l~~~~~p~~i~~~~~~P------~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        490 --TEDEIKQFVA-KQVVFYKRIHKVFFVDSIP------KAPSGKILRKDLRAKLA  535 (537)
T ss_pred             --CHHHHHHHHH-hhCcCccccceEEEeccCC------CCCcchhhHHHHHHHHh
Confidence              1345666664 6899999999999999999      99999999999998874

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-68  Score=595.39  Aligned_cols=507  Identities=20%  Similarity=0.239  Sum_probs=396.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.+.|.+.++++|+++|+...   ++    .+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l   84 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRC---DG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL   84 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeec---CC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence            3467899999999999999999754   33    2459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.++++.++++++|++................+. ++..+.....  .         . +
T Consensus        85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~---------~-~  151 (540)
T PRK05857         85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVT--R---------E-S  151 (540)
T ss_pred             HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccccc--c---------c-c
Confidence            999999999999999999999999999999999998764322111111111222 2222211100  0         0 0


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc----cccccCCCcEEEEcCChhhHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS----LMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      .+....  ..........++++++++|||||||.||||++||+++.+......    ..+.+..+++.++.+|++|.+++
T Consensus       152 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l  229 (540)
T PRK05857        152 EHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL  229 (540)
T ss_pred             cccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH
Confidence            000000  001112234678999999999999999999999999987654322    12455678899999999999999


Q ss_pred             HHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       313 ~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      ...+.+++.|+++++.+.++..+++.++++++|.++++|+++..+.+.....                            
T Consensus       230 ~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~----------------------------  281 (540)
T PRK05857        230 WWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA----------------------------  281 (540)
T ss_pred             HHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC----------------------------
Confidence            8888899999998877788999999999999999999999998887531100                            


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----CCCCCccC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----NLSGHVGS  467 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~  467 (698)
                                    ....+++|.+++||++++....+++. .+|+++++.||+||++..........     ...+++|+
T Consensus       282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  346 (540)
T PRK05857        282 --------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR  346 (540)
T ss_pred             --------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeecccccccccccccCCcCc
Confidence                          00115899999999999988876554 67999999999999975433222211     24578999


Q ss_pred             CCCCcEEEEEecCCCCCCCC--CCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCC
Q 005406          468 PNPACEIKLVDVPEMNYTSE--DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~--~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      |++|++++|+|.++....+.  ...++.|||+++|++++.|||++++.|++.| .+|||+|||+|++|++|++++.||.|
T Consensus       347 ~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~  425 (540)
T PRK05857        347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSS  425 (540)
T ss_pred             ccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecccc
Confidence            99999999998543323222  1224589999999999999999999999999 68999999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      |+||+ +|++|+|.|||+++..||+|.+|+|++.++   ++.++++|++.+..                    +....+.
T Consensus       426 ~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~--------------------~~~~~~~  484 (540)
T PRK05857        426 EMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL--------------------DESAARA  484 (540)
T ss_pred             ccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC--------------------ChhhHHH
Confidence            99996 899999999999999999999999999654   34666777665421                    1111233


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      +.+.+.+.++ ..++.|++|+.|++++++|      +|++||++|++|++.++..
T Consensus       485 l~~~~~~~~~-~~l~~~~~P~~v~~~~~iP------~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        485 LKHTIAARFR-RESEPMARPSTIVIVTDIP------RTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             HHHHHHHHHH-hhhccccCCeEEEEhhcCC------CCCCcceeHHHHHHhhhhc
Confidence            4555666664 6799999999999999999      9999999999999888754

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-67  Score=595.52  Aligned_cols=504  Identities=23%  Similarity=0.328  Sum_probs=394.5

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCc----cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGT----VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI  153 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~  153 (698)
                      ..|+.++|.+.++++|+++|+.+.   ++.    ...++.+||+||.++++++|++|.+.|+++||+|+++++|+++|++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            357889999999999999999764   221    1124579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc--chHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ--TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       154 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      +++||+++|++++|+++.++.+++.+++++++++++|++..  ....+...  .....+.++.++...          ..
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~----------~~  149 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL----------LW  149 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc----------cc
Confidence            99999999999999999999999999999999999998752  11111111  011222333332210          00


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                      ....++++...............++++++|+|||||||.||||++||+++.+.+......+++.++|+.++.+|++|.++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~  229 (552)
T PRK09274        150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG  229 (552)
T ss_pred             CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh
Confidence            11234444322211122233456799999999999999999999999999998887777788999999999999988654


Q ss_pred             HHHHHHHHHhCcEEEEeC--------CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          312 RANQIVSVYYGVAVGFYQ--------GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       312 ~~~~~~~l~~G~~~~~~~--------~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                             +..|+++++.+        .++..+++.|+++++|+++++|+++..|.+.....                   
T Consensus       230 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------  283 (552)
T PRK09274        230 -------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-------------------  283 (552)
T ss_pred             -------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc-------------------
Confidence                   34577777653        47889999999999999999999999887632110                   


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh--CCceecccCcchhcchhcccCCC---
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAIDKG---  458 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~l~~~YG~TE~~~~~~~~~~~---  458 (698)
                                             ....+++|.+++||+++++++.+++++.+  |+++++.||+||++++++.....   
T Consensus       284 -----------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  340 (552)
T PRK09274        284 -----------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILF  340 (552)
T ss_pred             -----------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhc
Confidence                                   00115899999999999999999999988  57999999999998765433211   


Q ss_pred             -------CCCCCCccCCCCCcEEEEEecCC--------CCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc--cCC
Q 005406          459 -------DNLSGHVGSPNPACEIKLVDVPE--------MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI--DGD  521 (698)
Q Consensus       459 -------~~~~~~vG~p~~~~~v~i~d~~~--------~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f--~~~  521 (698)
                             .....++|+|+++++++|+|..+        +..++.+   +.|||+++|++++.|||++|+.|...|  +.+
T Consensus       341 ~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g---~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~  417 (552)
T PRK09274        341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATG---EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ  417 (552)
T ss_pred             cccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCC---CeeEEEEecCcccccccCChHHhhhhhcccCC
Confidence                   11234799999999999999532        2333434   489999999999999999999998876  446


Q ss_pred             C--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC--CCeEEEEEEcChhHHH
Q 005406          522 G--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDPDVLK  597 (698)
Q Consensus       522 g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~  597 (698)
                      |  ||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++  ++.++++|++.+... 
T Consensus       418 g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~-  495 (552)
T PRK09274        418 GDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVA-  495 (552)
T ss_pred             CCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccc-
Confidence            6  9999999999999999999999999997 899999999999999999999999998543  356888888776320 


Q ss_pred             HHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccC--cccCCChHHHHHHHH
Q 005406          598 DWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT--PTFKIKRPQAKERFA  675 (698)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T--~~GKi~R~~l~~~~~  675 (698)
                             .         ..    +.+.+++++.++  .++.++.|+.+++++++|      +|  ++|||+|++|++++.
T Consensus       496 -------~---------~~----~~l~~~l~~~l~--~~~~~~~~~~~~~~~~lP------~t~~~~GKi~r~~L~~~~~  547 (552)
T PRK09274        496 -------C---------SK----SALYQELRALAA--AHPHTAGIERFLIHPSFP------VDIRHNAKIFREKLAVWAA  547 (552)
T ss_pred             -------c---------ch----HHHhhhhHHHHH--hcCCCcceeEEeccCCCC------ccccccccccHHHHHHHHH
Confidence                   0         11    123455555553  345677889999999999      98  799999999999987


Q ss_pred             HHH
Q 005406          676 KAI  678 (698)
Q Consensus       676 ~~i  678 (698)
                      +.+
T Consensus       548 ~~~  550 (552)
T PRK09274        548 KQL  550 (552)
T ss_pred             Hhh
Confidence            765

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-67  Score=592.90  Aligned_cols=489  Identities=20%  Similarity=0.255  Sum_probs=403.2

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.++|.+.++++||++|+...   +      +.+||+||+++++++|++|.++|+++|++|+++++|+++|+++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999753   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.+++++++++++|++......+.......+....++..++..            ....+++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  181 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED------------HDLTVEV  181 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc------------ccccHHH
Confidence            9999999999999999999999999999999999776655554433334333344332211            0124454


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (698)
                      +......   ......+++.++++|||||||.||||+++|+++..........+.+..++++++.+|++|.+++...+.+
T Consensus       182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  258 (537)
T PRK13382        182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA  258 (537)
T ss_pred             HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence            4433211   1112356889999999999999999999999998887777667778899999999999999999878889


Q ss_pred             HHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      +..|+++++.. +++..+++.|+++++|++.++|+++..+.+......                                
T Consensus       259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------  306 (537)
T PRK13382        259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR--------------------------------  306 (537)
T ss_pred             HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------------
Confidence            99999998876 789999999999999999999999998865211000                                


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEE
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL  476 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i  476 (698)
                              ....+.++|.+++||+++++++.+.|.+.++.++++.||+||++.+++..... ....+++|+|+++++++|
T Consensus       307 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i  378 (537)
T PRK13382        307 --------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI  378 (537)
T ss_pred             --------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence                    00011479999999999999999999998999999999999998766543321 245679999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceee
Q 005406          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (698)
Q Consensus       477 ~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v  556 (698)
                      +| +++..++.+.   .|||+++|++++.||+  ++.+.. | .+|||+|||+++++++|+++|+||+||+||. +|++|
T Consensus       379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v  449 (537)
T PRK13382        379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENV  449 (537)
T ss_pred             EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEE
Confidence            99 4556665554   8999999999999998  555554 4 4799999999999999999999999999996 89999


Q ss_pred             cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE  633 (698)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  633 (698)
                      +|.+||+++.++|+|.+++|++.++   ++.++++|++.++.        .                 ...++++++++ 
T Consensus       450 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~-----------------~~~~~l~~~l~-  503 (537)
T PRK13382        450 YPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA--------S-----------------ATPETLKQHVR-  503 (537)
T ss_pred             CHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCC--------C-----------------CCHHHHHHHHH-
Confidence            9999999999999999999999654   46789999987632        0                 11345666665 


Q ss_pred             CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          634 GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       634 ~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      ..|+.|++|+.+++++++|      +|++||++|++|++
T Consensus       504 ~~l~~~~~P~~i~~v~~lP------~t~~gK~~r~~L~~  536 (537)
T PRK13382        504 DNLANYKVPRDIVVLDELP------RGATGKILRRELQA  536 (537)
T ss_pred             HhccCCCCCcEEEEeccCC------CCCCCCCcHHhhCC
Confidence            7899999999999999999      99999999999864

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-67  Score=593.40  Aligned_cols=511  Identities=23%  Similarity=0.342  Sum_probs=419.7

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..|+.++|.+.++++|+++|+.+.   +      +.+||+||.+++.++|.+|.+. |+++|++|+|+++|+++|+++++
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   79 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY   79 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence            468999999999999999999764   2      3599999999999999999999 99999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCC-------CCCC-----
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-------HLPS-----  224 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-------~~~~-----  224 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++.+....+......+ .++.+++.+....       ....     
T Consensus        80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (546)
T PRK08314         80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE  158 (546)
T ss_pred             HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence            99999999999999999999999999999999999987766665544333 2333333221100       0000     


Q ss_pred             --CCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEE
Q 005406          225 --LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS  302 (698)
Q Consensus       225 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  302 (698)
                        .....+..+..|++......  ........++++++|+|||||||.||||++||+++++.+......+++..+|++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~  236 (546)
T PRK08314        159 PPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA  236 (546)
T ss_pred             cccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence              00001123345666654322  12233457899999999999999999999999999998887777788899999999


Q ss_pred             cCChhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005406          303 YLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (698)
Q Consensus       303 ~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (698)
                      ++|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.....                  
T Consensus       237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------  298 (546)
T PRK08314        237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------  298 (546)
T ss_pred             EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence            999999999876 667899999999988 689999999999999999999999887764200                  


Q ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCC
Q 005406          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN  460 (698)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~  460 (698)
                                      ..        ....+++|.+++||+++++++.+++.+.+++++++.||+||++..+........
T Consensus       299 ----------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  354 (546)
T PRK08314        299 ----------------LA--------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP  354 (546)
T ss_pred             ----------------cc--------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence                            00        000147999999999999999999999889999999999999876665544445


Q ss_pred             CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc---CCCceecCcEEEEecCCc
Q 005406          461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGR  537 (698)
Q Consensus       461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~---~~gw~~TGDlg~~~~~G~  537 (698)
                      ..+++|.|+++++++|+|++++..++.+.   .|||+++|++++.||+++++.|++.|.   +++||+|||+|+++++|.
T Consensus       355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~  431 (546)
T PRK08314        355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY  431 (546)
T ss_pred             CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence            56789999999999999976777776665   899999999999999999999988873   346999999999999999


Q ss_pred             EEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhh
Q 005406          538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLC  614 (698)
Q Consensus       538 l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~  614 (698)
                      +++.||.||+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.++|+|+++++...        .        
T Consensus       432 l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~--------~--------  494 (546)
T PRK08314        432 FFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG--------K--------  494 (546)
T ss_pred             EEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC--------C--------
Confidence            9999999999997 799999999999999999999999998654   4678999998764200        0        


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          615 NDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       615 ~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                             ...++++++++ .+|+.|++|+.|++++++|      +|++||++|++|++..+.
T Consensus       495 -------~~~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        495 -------TTEEEIIAWAR-EHMAAYKYPRIVEFVDSLP------KSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             -------CCHHHHHHHHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHhh
Confidence                   01356667775 7899999999999999999      999999999999876544

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.7e-69  Score=707.88  Aligned_cols=531  Identities=17%  Similarity=0.198  Sum_probs=437.5

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|.+++++|+.+++++++..+....     +              +-.....      ...+.+...+++
T Consensus      3044 ~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~-----~--------------~~~~~~~------~~~~~~~~~~~~ 3098 (3956)
T PRK12467       3044 IERLAESFDRLLQAMLNNPAARLGELPTLAAHERR-----Q--------------VLHAWNA------TAAAYPSERLVH 3098 (3956)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHH-----H--------------HHHhhcc------CCCCCCccccHH
Confidence            46789999999999999999999999988655310     0              0000000      001123347899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|+++++++||++|+++.   +      +.+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||+++|
T Consensus      3099 ~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aG 3169 (3956)
T PRK12467       3099 QLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAG 3169 (3956)
T ss_pred             HHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhC
Confidence            9999999999999999764   2      359999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      +++|||+|.++.+++.+++++++++++|++......+..    .... .++.++..                     ...
T Consensus      3170 a~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~----~~~~-~~~~~~~~---------------------~~~ 3223 (3956)
T PRK12467       3170 GAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPA----PAGD-TALTLDRL---------------------DLN 3223 (3956)
T ss_pred             cEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccc----ccCC-ceeeecch---------------------hhc
Confidence            999999999999999999999999999998765433211    0111 12222211                     000


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                      ......+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+....+.+|+.|
T Consensus      3224 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G 3303 (3956)
T PRK12467       3224 GYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICG 3303 (3956)
T ss_pred             ccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCC
Confidence            11111222345789999999999999999999999999999999888889999999999999999999998899999999


Q ss_pred             cEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          323 VAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       323 ~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      +++++.+   .++..+++.|+++++|++.++|+++..+.+...                                     
T Consensus      3304 ~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------------- 3346 (3956)
T PRK12467       3304 GCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------------- 3346 (3956)
T ss_pred             CEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------------
Confidence            9999987   578999999999999999999999988865210                                     


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCCCccCCCCCcE
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGHVGSPNPACE  473 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~  473 (698)
                             ....++||.+++|||++++++.+.|.+.+ ++.++|+||+||+++.++......     ....++|+|++|++
T Consensus      3347 -------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 3419 (3956)
T PRK12467       3347 -------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRS 3419 (3956)
T ss_pred             -------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCE
Confidence                   00115799999999999999999998776 678999999999988766443221     23368999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCC-------ceecCcEEEEecCCcEEEEccCCC
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG-------WLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~g-------w~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      ++|+| ++++.++.|.   .|||+|+|+++++||+|+|+.|+++|..++       ||+|||+|++++||.|+|+||+|+
T Consensus      3420 ~~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~ 3495 (3956)
T PRK12467       3420 IYVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDH 3495 (3956)
T ss_pred             EEEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccc
Confidence            99998 5567666665   899999999999999999999999996544       699999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcC--CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL  624 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  624 (698)
                      +||+ +|++|+|.|||++|.++|+|.+|+|++..  .++.++|+|++....                         ....
T Consensus      3496 ~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~-------------------------~~~~ 3549 (3956)
T PRK12467       3496 QVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ-------------------------GDWR 3549 (3956)
T ss_pred             eEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC-------------------------cccH
Confidence            9998 89999999999999999999999999743  357899999987631                         0124


Q ss_pred             HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                      +++++.++ .+||.|++|..|++++++|      +|++||++|++|.+.+
T Consensus      3550 ~~l~~~l~-~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3550 ETLRDHLA-ASLPDYMVPAQLLVLAAMP------LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             HHHHHHHh-ccCChhhCCCeeeeeccCC------CCCCCccchhhcCCCC
Confidence            56666775 7899999999999999999      9999999999998754

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-67  Score=596.09  Aligned_cols=518  Identities=22%  Similarity=0.308  Sum_probs=420.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..|+.++|+..+..+|++.|+.+.    +  .+.+.+||+||.+++.++|++|.+ .|+++|++|+++++|+++++++++
T Consensus         9 ~~~~~~~l~~~a~~~~~~~a~~~~----~--~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l   82 (576)
T PRK05620          9 PLSLTRILEYGSTVHGDTTVTTWG----G--AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF   82 (576)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc----C--CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            468999999999999999998753    1  235789999999999999999986 799999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|++++++.+++.++++.++++++|++......+.+....++..+.++..+................+.+|
T Consensus        83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  162 (576)
T PRK05620         83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSY  162 (576)
T ss_pred             HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccH
Confidence            99999999999999999999999999999999999988777777666667777767666543211111111123345678


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc--ccccccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      +++.+.... ........++++++++|||||||.||||+++|+++.......  ...+++..+|++++.+|++|.+++..
T Consensus       163 ~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  241 (576)
T PRK05620        163 EALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV  241 (576)
T ss_pred             HHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH
Confidence            888764322 222234567999999999999999999999999986554432  23467888999999999999999988


Q ss_pred             HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+.++..|+++++..  .++..+++.++++++|+++++|++|..+........                           
T Consensus       242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------  294 (576)
T PRK05620        242 PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------------  294 (576)
T ss_pred             HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------------
Confidence            888999999998875  689999999999999999999999988765321000                           


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC--------CCCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--------NLSGH  464 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~--------~~~~~  464 (698)
                                     ....++|.+++||+++++.+.+.|...+|+++++.||+||++..++...+.+        ....+
T Consensus       295 ---------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  359 (576)
T PRK05620        295 ---------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVS  359 (576)
T ss_pred             ---------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccc
Confidence                           0003799999999999999999999888999999999999987665443321        11347


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhh----------------cccccCCCceecCc
Q 005406          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----------------REVIDGDGWLHTGD  528 (698)
Q Consensus       465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t----------------~~~f~~~gw~~TGD  528 (698)
                      +|++.++++++++|.  +..... .++..|||+++|++++.|||++++.|                .++|..+|||+|||
T Consensus       360 ~G~~~~~~~~~i~~~--g~~~~~-~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD  436 (576)
T PRK05620        360 QGRFPASLEYRIVND--GQVMES-TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGD  436 (576)
T ss_pred             cCCcCCceeEEEecC--CccccC-CCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCc
Confidence            899999999999984  333221 12247999999999999999999988                33455689999999


Q ss_pred             EEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCC
Q 005406          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGI  605 (698)
Q Consensus       529 lg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~  605 (698)
                      +|++++||.++|+||.||+||. +|++|+|.+||+++.+||.|.+|+|++.++   ++.+++++++.++..        .
T Consensus       437 ~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~--------~  507 (576)
T PRK05620        437 VGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE--------P  507 (576)
T ss_pred             eEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC--------c
Confidence            9999999999999999999995 899999999999999999999999999654   457888888765320        0


Q ss_pred             CcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          606 KFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                                +    +...++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++++++.
T Consensus       508 ----------~----~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~P------~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        508 ----------T----RETAERLRDQLR-DRLPNWMLPEYWTFVDEID------KTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             ----------c----cccHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCcccCcHHHHHHHHhcC
Confidence                      0    012456667765 7899999999999999999      9999999999999998863

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-67  Score=603.59  Aligned_cols=503  Identities=20%  Similarity=0.230  Sum_probs=389.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++.+|+++|+.+....+...+.++++||+||+++++++|++|.+. +++||+|+|+++|+++|++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l   97 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF   97 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence            457899999999999999999976411011123457899999999999999999987 8999999999999999999999


Q ss_pred             HHHhcCCeEEec-CCCCC--HHHHHHHHhhccceEEEecccchHHHHhhhhcCCc--eeEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPL-YDTLG--PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS--VHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl-~~~~~--~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|++++|+ ++..+  .+++.+++++++++++|++.+....+.+.....+.  ...++.++.....          
T Consensus        98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  167 (631)
T PRK07769         98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE----------  167 (631)
T ss_pred             HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc----------
Confidence            999999999999 45554  68899999999999999988765555443333221  1123332211000          


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                              .  . . ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|+++
T Consensus       168 --------~--~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g  235 (631)
T PRK07769        168 --------V--G-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMG  235 (631)
T ss_pred             --------c--c-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchh
Confidence                    0  0 0 01112346799999999999999999999999999988877777788889999999999999999


Q ss_pred             HHHHHHHHHhCcEEEEeC---C--ChhhHHHHHhhhcC---cEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          312 RANQIVSVYYGVAVGFYQ---G--DNLKLMDDLAVLKP---TIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       312 ~~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      +...+.+++.|+++++.+   +  ++..+++.++++++   +++.++|.++..+.....  ...                
T Consensus       236 l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~----------------  297 (631)
T PRK07769        236 LITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPK----------------  297 (631)
T ss_pred             hHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cch----------------
Confidence            988888888899998875   2  88899999998886   789999998876653100  000                


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh---CC---ceecccCcchhcchhcccCC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISAIDK  457 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~l~~~YG~TE~~~~~~~~~~  457 (698)
                           .. .  ..++           .+++|.+++||+++++++.+.|.+.|   |+   .++++||+||++..++....
T Consensus       298 -----~~-~--~~~~-----------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~  358 (631)
T PRK07769        298 -----DG-E--PPLD-----------LSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPM  358 (631)
T ss_pred             -----hc-c--cCcc-----------hhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCC
Confidence                 00 0  0000           15899999999999999999998877   33   59999999999865554322


Q ss_pred             CC---------------------------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCC
Q 005406          458 GD---------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN  510 (698)
Q Consensus       458 ~~---------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~  510 (698)
                      ..                           ...+++|+|.++++++|+|.+++..++.++   .|||||+||+++.|||++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~~  435 (631)
T PRK07769        359 DEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWGK  435 (631)
T ss_pred             CCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccCC
Confidence            11                           012479999999999999976666666555   899999999999999999


Q ss_pred             hhhhccccc-----------------CCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhc-CcCce
Q 005406          511 EVQTREVID-----------------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK-CKFVL  572 (698)
Q Consensus       511 ~~~t~~~f~-----------------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~-~p~V~  572 (698)
                      ++.|++.|.                 .+|||+|||+|+++ ||+|+|+||.||+||+ +|++|+|.|||++|.+ ||.|.
T Consensus       436 ~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v~  513 (631)
T PRK07769        436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKALR  513 (631)
T ss_pred             hhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhcccccc
Confidence            999999884                 25899999999995 9999999999999997 8999999999999986 89999


Q ss_pred             e--EEEEEcCC----------------------CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005406          573 Q--CFIYGDSF----------------------NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMN  628 (698)
Q Consensus       573 ~--~~V~g~~~----------------------~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  628 (698)
                      +  ++|++.++                      ++.++|+|++.++...                        .-.++|.
T Consensus       514 ~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~------------------------~~~~~l~  569 (631)
T PRK07769        514 TGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK------------------------LDPQPIA  569 (631)
T ss_pred             CCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc------------------------ccHHHHH
Confidence            8  88888554                      4568888887653100                        0123444


Q ss_pred             HHHHhCCCCC-cc-eeeEEEEec--CCCCCCCCccCcccCCChHHHHHHHH
Q 005406          629 AVGKEGQLRG-FE-YAKAVTLMP--EPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       629 ~~~~~~~L~~-~~-~p~~i~~~~--~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      ++++ .+|+. |+ .|+.+.+++  ++|      +|++|||+|++|++.|.
T Consensus       570 ~~~~-~~l~~~~~~~p~~~~~v~~~~lP------~t~~GKi~r~~l~~~~~  613 (631)
T PRK07769        570 DDIR-AAIAVRHGVTVRDVLLVPAGSIP------RTSSGKIARRACRAAYL  613 (631)
T ss_pred             HHHH-HHHHHHcCCCccEEEEECCCccc------cCCCcHHHHHHHHHHHH
Confidence            4443 44553 55 478888886  699      99999999999998764

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-68  Score=612.36  Aligned_cols=477  Identities=20%  Similarity=0.266  Sum_probs=391.2

Q ss_pred             CCHHHHHHHHHHh--CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           79 GTLHDNFIYAVEN--YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        79 ~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .|+.++|.+++.+  +||++|+...          ..+||+||+++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3788999998886  7999999542          249999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|++|.++.+++.+++++++++++|++......+...       . +                     ...
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~---------------------~~~  124 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-V---------------------AEA  124 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-c---------------------chh
Confidence            9999999999999999999999999999999999986543322110       0 0                     001


Q ss_pred             HHHHhcCC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc-cccccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS-LMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      .++..... ..+....+..+++++||+|||||||.||||+++|+++.+.+..+. ..+++.++|++++.+|++|.+++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~  204 (705)
T PRK06060        125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN  204 (705)
T ss_pred             hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence            11111100 011112234678999999999999999999999999988776553 3577889999999999999998754


Q ss_pred             -HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005406          315 -QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (698)
Q Consensus       315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (698)
                       .+.+++.|+++++.+  .++..+...++++++|+++++|+++..+.+....                            
T Consensus       205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------------  256 (705)
T PRK06060        205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------------  256 (705)
T ss_pred             HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence             677899999999876  5788888999999999999999999888653110                            


Q ss_pred             CCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCCCCccCCCC
Q 005406          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP  470 (698)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~  470 (698)
                                      ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++.++..........+++|+|++
T Consensus       257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~  320 (705)
T PRK06060        257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP  320 (705)
T ss_pred             ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence                            0014899999999999999999998888 58999999999998655444333445678999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEec
Q 005406          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (698)
Q Consensus       471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikl  550 (698)
                      +++++|+| ++++.++.+.   .|||||+|++++.|||++|+.+.   ..+|||+|||+|++++||+++|+||+||+||+
T Consensus       321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~  393 (705)
T PRK06060        321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVI  393 (705)
T ss_pred             CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEE
Confidence            99999999 4455555554   89999999999999999998763   36899999999999999999999999999997


Q ss_pred             CCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005406          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEM  627 (698)
Q Consensus       551 s~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  627 (698)
                       +|++|+|.|||+++.+||.|.+++|++.++   ++.++++|++....        ..          +    ....+++
T Consensus       394 -~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--------~~----------~----~~~~~~i  450 (705)
T PRK06060        394 -GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGA--------TI----------D----GSVMRDL  450 (705)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEecccc--------Cc----------C----hHHHHHH
Confidence             899999999999999999999999998653   36889999976531        00          1    1123456


Q ss_pred             HHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          628 NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       628 ~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      +++++ .+|+.|++|..|++++++|      +|++||++|++|++.+.
T Consensus       451 ~~~l~-~~L~~~~~P~~i~~v~~iP------~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        451 HRGLL-NRLSAFKVPHRFAVVDRLP------RTPNGKLVRGALRKQSP  491 (705)
T ss_pred             HHHHH-HhCCCCcCCcEEEEeecCC------CCcchhhHHHHHHhhcc
Confidence            66665 6899999999999999999      99999999999998774

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=9.7e-67  Score=585.37  Aligned_cols=507  Identities=20%  Similarity=0.260  Sum_probs=412.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|++.++++||++|+...   +      +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l   89 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL   89 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4578999999999999999999753   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++.+....+.........++.++.++......    ....+   ..
T Consensus        90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~  162 (542)
T PRK06155         90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS----VPAGW---ST  162 (542)
T ss_pred             HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc----ccccc---ch
Confidence            999999999999999999999999999999999999877666555443333445556555432100    00000   00


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (698)
                      .++...  ..........++++++|+|||||||.||||+++|+++.+........+++.+++++++.+|++|.+++...+
T Consensus       163 ~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~  240 (542)
T PRK06155        163 APLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF  240 (542)
T ss_pred             hhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence            111111  111122334678999999999999999999999999988877777778899999999999999999998888


Q ss_pred             HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      .+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+.....                               
T Consensus       241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-------------------------------  289 (542)
T PRK06155        241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE-------------------------------  289 (542)
T ss_pred             HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-------------------------------
Confidence            9999999999877 68999999999999999999999988776521100                               


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEE
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK  475 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~  475 (698)
                                 ....+++|.++.||  +++.+.+.+++.+++++++.||+||++.++.... .....+++|.|.++++++
T Consensus       290 -----------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~  355 (542)
T PRK06155        290 -----------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR  355 (542)
T ss_pred             -----------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence                       00114788887666  5788889998889999999999999987665432 345678899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCC---CccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCC
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~  552 (698)
                      |+| +++..++.+.   .|||+++|+   +++.||+++++.|.+.| .+|||+|||+|++++||.++|+||.||+||+ +
T Consensus       356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~  429 (542)
T PRK06155        356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-R  429 (542)
T ss_pred             EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEe-C
Confidence            998 4556666554   899999998   69999999999999988 6899999999999999999999999999996 8


Q ss_pred             ceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      |++|+|.+||+++.++|+|.+++|++.++   ++.+.++++++.+.        ..+                 ..++++
T Consensus       430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~~~~  484 (542)
T PRK06155        430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGT--------ALE-----------------PVALVR  484 (542)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence            99999999999999999999999998654   46778888876532        011                 345566


Q ss_pred             HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhccc
Q 005406          630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA  686 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~~  686 (698)
                      +++ .+|+.|++|..|++++++|      +|++||++|++|++.+-  ..+.|++..
T Consensus       485 ~~~-~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~l~~~~~--~~~~~~~~~  532 (542)
T PRK06155        485 HCE-PRLAYFAVPRYVEFVAALP------KTENGKVQKFVLREQGV--TADTWDREA  532 (542)
T ss_pred             HHH-hhCcCccCCcEEEEeccCC------CCcccceeHHHHHhhcc--CCchhhhhh
Confidence            664 6899999999999999999      99999999999998762  233555443

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.4e-66  Score=584.82  Aligned_cols=498  Identities=21%  Similarity=0.296  Sum_probs=405.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|++.++.+|+++|+...   +...+..+.+||+||++++.++|.+|++.|+++|++|+++++|+++|+++++|
T Consensus        21 ~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   97 (538)
T TIGR03208        21 DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA   97 (538)
T ss_pred             cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            358999999999999999999753   11122356799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      |+++|++++|+++.++.+++.++++.+++++++++....     .........++..+.++..+....            
T Consensus        98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  165 (538)
T TIGR03208        98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD------------  165 (538)
T ss_pred             HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC------------
Confidence            999999999999999999999999999999999987542     222223334455556666543210            


Q ss_pred             EeeHHHHHhcCCCCC-------CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCC
Q 005406          233 LISYLQLQSQGCSSP-------QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p  305 (698)
                       ..++.++.......       .......++++++|+|||||||.||||+++|+++.+.+......+++..+|++++++|
T Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p  244 (538)
T TIGR03208       166 -DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP  244 (538)
T ss_pred             -cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCC
Confidence             12333322111000       1112356799999999999999999999999999998887777788889999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      ++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+........                  
T Consensus       245 l~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~------------------  306 (538)
T TIGR03208       245 MAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG------------------  306 (538)
T ss_pred             chhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC------------------
Confidence            999998766 677899999998877 689999999999999999999999988765321000                  


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC--CC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--NL  461 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~  461 (698)
                                              ...+++|.+++||+++++++.+++.+.+|+++++.||+||++.+++......  ..
T Consensus       307 ------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  362 (538)
T TIGR03208       307 ------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKA  362 (538)
T ss_pred             ------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhc
Confidence                                    0014899999999999999999998888999999999999987665443222  22


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      ..++|+|+++++++|+| +++...+.++   .|||+++|++++.||+++|+.|.  ++.+|||+|||+|++|++|.++++
T Consensus       363 ~~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~  436 (538)
T TIGR03208       363 STTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRIN  436 (538)
T ss_pred             cCcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEE
Confidence            45799999999999999 4555555554   89999999999999999998875  357899999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||.||+||. +|++|+|.+||+++.+||+|.+++|++.++   ++.++++|++.++.        ..+            
T Consensus       437 gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~------------  495 (538)
T TIGR03208       437 GRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC--------TLD------------  495 (538)
T ss_pred             eccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--------CCC------------
Confidence            999999996 899999999999999999999999999654   36789999987631        111            


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                           .+++.+++++.+++.|++|+.|++++++|      +|++||++|++|+
T Consensus       496 -----~~~l~~~~~~~~l~~~~~P~~i~~v~~iP------~t~~gKv~r~~L~  537 (538)
T TIGR03208       496 -----FAAMVAFLKAQKVALQYIPERLEVVDALP------ATPAGKIQKFRLR  537 (538)
T ss_pred             -----HHHHHHHHHhcchhhccCCcEEEEeccCC------CCCccccchHhhc
Confidence                 23455555445799999999999999999      9999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.1e-67  Score=608.83  Aligned_cols=491  Identities=22%  Similarity=0.269  Sum_probs=387.9

Q ss_pred             CCCCHHHHHHHHHHhCCC-CCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      +..|++++|.++++++|+ ++|+...        +++++||+||.++++++|++|.+. +++||+|+|+++|++||++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~--------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV--------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC--------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            467899999999999998 5777421        235699999999999999999987 599999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHH--hhhhcCCceeEEEEeCCCCCCCCCCCCCCCceE
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      |||+++|++++|++++++.+++.+++++++++++|++.+......  .....++.+..+ .+++....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh------------
Confidence            999999999999999999999999999999999999876543211  111112222222 22211000            


Q ss_pred             eeHHHH--H-hcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHH
Q 005406          234 ISYLQL--Q-SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY  310 (698)
Q Consensus       234 ~~~~~~--~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  310 (698)
                      ..+.+.  . ..............++|+++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~  419 (718)
T PRK08043        340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSF  419 (718)
T ss_pred             cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhh
Confidence            011110  0 0000001111234679999999999999999999999999998887777778889999999999999999


Q ss_pred             HHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406          311 ERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI  387 (698)
Q Consensus       311 ~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~  387 (698)
                      ++.. .+.+++.|+++++.+  .+...+.+.++++++|+++++|+++..+.+..     ..                   
T Consensus       420 g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----~~-------------------  475 (718)
T PRK08043        420 GLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-----NP-------------------  475 (718)
T ss_pred             hhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-----Cc-------------------
Confidence            9876 678899999999886  46678889999999999999999887654310     00                   


Q ss_pred             HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccC
Q 005406          388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS  467 (698)
Q Consensus       388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~  467 (698)
                               ++           .+++|.+++||+++++++.+.|++.+|++++++||+||++++++...+.....+++|+
T Consensus       476 ---------~~-----------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~  535 (718)
T PRK08043        476 ---------YD-----------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGR  535 (718)
T ss_pred             ---------cc-----------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCC
Confidence                     00           1589999999999999999999988999999999999998766655444456789999


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccC--Chhh-------hcccccCCCceecCcEEEEecCCcE
Q 005406          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK--NEVQ-------TREVIDGDGWLHTGDIGLWLPGGRL  538 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~--~~~~-------t~~~f~~~gw~~TGDlg~~~~~G~l  538 (698)
                      |+||++++|+|.++.     +   +.|||+++|++++.|||+  +++.       +.+.+..+|||+|||+|++|+||++
T Consensus       536 p~pg~~~~i~d~~~~-----~---~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l  607 (718)
T PRK08043        536 ILPGMDARLLSVPGI-----E---QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFV  607 (718)
T ss_pred             cCCCCeeEEecCCCC-----C---CceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcE
Confidence            999999999984321     2   369999999999999998  4542       2333346899999999999999999


Q ss_pred             EEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhC
Q 005406          539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCN  615 (698)
Q Consensus       539 ~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~  615 (698)
                      +|+||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.++   ++.++++++...           .+         
T Consensus       608 ~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-----------~~---------  666 (718)
T PRK08043        608 QIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-----------LT---------  666 (718)
T ss_pred             EEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-----------cC---------
Confidence            999999999997 799999999999999999888888888543   456666654211           11         


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          616 DPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       616 ~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                              .+++++++++..|+.|++|+.|++++++|      +|++||++|++|++.+.+
T Consensus       667 --------~~~l~~~~~~~~l~~~~vP~~i~~v~~lP------~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        667 --------REKLQQYAREHGVPELAVPRDIRYLKQLP------LLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             --------HHHHHHHHHhcCCCcccCCceEEEecccC------cCCCCCcCHHHHHHHHhc
Confidence                    34567777645599999999999999999      999999999999887643

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.3e-67  Score=586.96  Aligned_cols=506  Identities=22%  Similarity=0.284  Sum_probs=399.6

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .+...|+.++|++.++++|+++|+.+.   ++    .+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---AD----RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CC----CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            446788999999999999999999764   22    24699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      ++||+++|++++|+++.++.+++.+++++++++++|++.............  .....+.+......      ..+....
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~  156 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR--WWPLTVNVGGDSGP------SGGTLSV  156 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc--ccceeeeecccccc------ccccccc
Confidence            999999999999999999999999999999999999986432211110000  00111111111000      0000000


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      .+......  ..........++++++|+|||||||.||||+++|+++.+.+......+++..+|++++.+|++|.+++..
T Consensus       157 ~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  234 (534)
T PRK05852        157 HLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA  234 (534)
T ss_pred             ccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence            11110000  0001111123578899999999999999999999999988888777788899999999999999999887


Q ss_pred             -HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          315 -QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       315 -~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                       .+.+++.|+++++.+   +++..+++.++++++|.++++|.++..+.+......                         
T Consensus       235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------  289 (534)
T PRK05852        235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------------  289 (534)
T ss_pred             HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence             566788888888754   578899999999999999999999988876321100                         


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-----C---CCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-----D---NLS  462 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-----~---~~~  462 (698)
                                     .....+++|.+++||+++++.+.+++.+.++++++++||+||++..++.....     .   ...
T Consensus       290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~  354 (534)
T PRK05852        290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST  354 (534)
T ss_pred             ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence                           00011589999999999999999999999999999999999998766543321     1   123


Q ss_pred             CCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEc
Q 005406          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~G  542 (698)
                      +.+|. .++++++++| +++..++.++   .|||+++|+++++|||++++.|++.| .+|||+|||+|++|+||++++.|
T Consensus       355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g  428 (534)
T PRK05852        355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG  428 (534)
T ss_pred             ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence            34444 7999999999 4556555554   89999999999999999999999998 68999999999999999999999


Q ss_pred             cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA  619 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (698)
                      |.||+||. +|.+|+|.+||+++.++|+|.+|+|+|.++   ++.++++|++++..        +.+             
T Consensus       429 R~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~--------~~~-------------  486 (534)
T PRK05852        429 RIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA--------PPT-------------  486 (534)
T ss_pred             cchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC--------CCC-------------
Confidence            99999996 899999999999999999999999999764   46788898876531        011             


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                          .++|.++++ .+|+.|++|+.|++++++|      +|++||++|++|++.|.+
T Consensus       487 ----~~~i~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        487 ----AEELVQFCR-ERLAAFEIPASFQEASGLP------HTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             ----HHHHHHHHH-HhcccccCCeEEEEhhhcC------CCCCccccHHHHHHHhcc
Confidence                345666665 6799999999999999999      999999999999998853

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-66  Score=576.04  Aligned_cols=476  Identities=26%  Similarity=0.342  Sum_probs=400.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ++|+++.|++.+.++||++|+.+.   +      +.+||+||+++++++|++|.+.|+++|++|+++++|+++|++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            368999999999999999999753   2      5699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++.+++.++++++++++++++...........                             ...++
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------------------------~~~~~  122 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------------------SVKFA  122 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------------------------cccHH
Confidence            9999999999999999999999999999999999876443322110                             01133


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV  317 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~  317 (698)
                      ++...............++++++++|||||||.||+|++||.++...+......++++++|++++.+|++|++++...+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  202 (483)
T PRK03640        123 ELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMR  202 (483)
T ss_pred             HHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHH
Confidence            33332211112223346789999999999999999999999999887776666688899999999999999999988888


Q ss_pred             HHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchh
Q 005406          318 SVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (698)
Q Consensus       318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (698)
                      ++..|+++++.+ .++..+++.++++++|++.++|+++..+.+.....                                
T Consensus       203 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------------  250 (483)
T PRK03640        203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------------  250 (483)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------------
Confidence            999999999988 68999999999999999999999999887531100                                


Q ss_pred             hHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCCCCCccCCCCCcEE
Q 005406          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEI  474 (698)
Q Consensus       397 ~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v  474 (698)
                                 ....++|.+++||+++++.+.+.++. +++++++.||+||++..+......  ....+++|+|++++++
T Consensus       251 -----------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~  318 (483)
T PRK03640        251 -----------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL  318 (483)
T ss_pred             -----------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCcccccccccCcccccccCCCcccccCCcEE
Confidence                       01148999999999999999998887 599999999999987654433332  2456899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCce
Q 005406          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE  554 (698)
Q Consensus       475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~  554 (698)
                      +|.+. + ..++.+.   .|||+++|++++.||+++++.+...| .+|||+|||+|++++||.++++||+||++|+ +|+
T Consensus       319 ~i~~~-~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~  391 (483)
T PRK03640        319 KIEKD-G-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGE  391 (483)
T ss_pred             EEecC-C-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCE
Confidence            99983 2 4444444   89999999999999999999999998 6899999999999999999999999999996 899


Q ss_pred             eecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHH
Q 005406          555 YVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVG  631 (698)
Q Consensus       555 ~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  631 (698)
                      +|+|.+||+++.++|+|.+++|++.++   +..++++++++..          .+                 .+++++++
T Consensus       392 ~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~-----------------~~~l~~~~  444 (483)
T PRK03640        392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE----------VT-----------------EEELRHFC  444 (483)
T ss_pred             EECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC----------CC-----------------HHHHHHHH
Confidence            999999999999999999999998654   3567787776542          11                 34455666


Q ss_pred             HhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          632 KEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       632 ~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      + ..|+.|++|+.|++++++|      +|++||++|++|++.+++
T Consensus       445 ~-~~l~~~~~p~~i~~~~~iP------~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        445 E-EKLAKYKVPKRFYFVEELP------RNASGKLLRHELKQLVEE  482 (483)
T ss_pred             H-HhccCCCCCcEEEEeCCCC------CCCccceeHHHHHHHHhh
Confidence            4 6799999999999999999      999999999999999874

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-66  Score=579.62  Aligned_cols=501  Identities=25%  Similarity=0.411  Sum_probs=423.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      +..++.+.|++.++.+|+++|+.+.   +      +.+||+||++++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l   73 (513)
T PRK07656          3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL   73 (513)
T ss_pred             ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4578999999999999999999763   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+.+.++++++++++++++.............++.++.++.........      ......+|
T Consensus        74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (513)
T PRK07656         74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF  147 (513)
T ss_pred             HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence            999999999999999999999999999999999999887666655555566666666654432211      01123567


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-H
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (698)
                      +++...... ........++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++.. .
T Consensus       148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (513)
T PRK07656        148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV  226 (513)
T ss_pred             HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence            777654332 12334467899999999999999999999999999988887777788999999999999999999876 6


Q ss_pred             HHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCc
Q 005406          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (698)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (698)
                      +.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.....                              
T Consensus       227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------  276 (513)
T PRK07656        227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------------------------------  276 (513)
T ss_pred             HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------------------------------
Confidence            77899999998876 68999999999999999999999999887631100                              


Q ss_pred             hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCC-C--CCCCccCCCC
Q 005406          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD-N--LSGHVGSPNP  470 (698)
Q Consensus       395 ~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~-~--~~~~vG~p~~  470 (698)
                                  .....++|.+++||+++++++.+.+.+.+++ .+++.||+||++++++.+.... .  ..+++|.|++
T Consensus       277 ------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~  344 (513)
T PRK07656        277 ------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA  344 (513)
T ss_pred             ------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence                        0011589999999999999999999998998 8999999999987776655433 2  2678999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEec
Q 005406          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (698)
Q Consensus       471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikl  550 (698)
                      +++++|+| +++..++.+.   .|||+++|+.++.||+++++.+...|..+|||+|||+|+++++|.++++||.||+||+
T Consensus       345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~  420 (513)
T PRK07656        345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV  420 (513)
T ss_pred             CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe
Confidence            99999999 5566666555   8999999999999999999999999977999999999999999999999999999997


Q ss_pred             CCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005406          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEM  627 (698)
Q Consensus       551 s~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  627 (698)
                       +|.+|+|.+||+++.++|+|.+++|++.++   ++.++++|++++..        +.+                 .+++
T Consensus       421 -~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l  474 (513)
T PRK07656        421 -GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------ELT-----------------EEEL  474 (513)
T ss_pred             -CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CCC-----------------HHHH
Confidence             899999999999999999999999998543   46788999876421        111                 2455


Q ss_pred             HHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          628 NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       628 ~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      .++++ ..|+.+++|..+++++++|      +|++||++|++|++
T Consensus       475 ~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~gK~~r~~l~~  512 (513)
T PRK07656        475 IAYCR-EHLAKYKVPRSIEFLDELP------KNATGKVLKRALRE  512 (513)
T ss_pred             HHHHH-hhcccccCCCEEEEecCCC------CCCccceeHHHHhc
Confidence            66664 6899999999999999999      99999999999875

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.1e-68  Score=697.57  Aligned_cols=550  Identities=19%  Similarity=0.209  Sum_probs=441.5

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|.+++++|+.+++++++..+...      .             .+.......      ..+.+...+++
T Consensus      1523 i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~------~-------------~~~~~~~~~------~~~~~~~~~~~ 1577 (3956)
T PRK12467       1523 IERLAGHWLNLLQGLVADPERRLGELDLLDEAER------R-------------QILEGWNAT------HTGYPLARLVH 1577 (3956)
T ss_pred             HHHHHHHHHHHHHHHhhCccCceeeccccchHHh------h-------------hhHHhhcCC------ccCCCccccHH
Confidence            4578999999999999999999999998765421      0             000000000      01123346899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|++.++++|+++|+.+.   +      +.+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||+++|
T Consensus      1578 ~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG 1648 (3956)
T PRK12467       1578 QLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAG 1648 (3956)
T ss_pred             HHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccC
Confidence            9999999999999999764   2      459999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      ++++||+|.++.+++.++++++++++++++......+.    ...... ++.++...                  ++...
T Consensus      1649 ~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~------------------~~~~~ 1705 (3956)
T PRK12467       1649 GAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLP----LPDGLR-SLVLDQED------------------DWLEG 1705 (3956)
T ss_pred             ceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCc----cccCCc-EEEecccc------------------chhcc
Confidence            99999999999999999999999999999876433221    111112 22222111                  00000


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                      . ....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|+++++.|++|+++++.++.+++.|
T Consensus      1706 ~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G 1784 (3956)
T PRK12467       1706 Y-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLING 1784 (3956)
T ss_pred             C-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCC
Confidence            0 111222345789999999999999999999999999999998888888999999999999999999998899999999


Q ss_pred             cEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406          323 VAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (698)
Q Consensus       323 ~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (698)
                      +++++.+    .++..+++.|+++++|++.++|+++..|......                                   
T Consensus      1785 ~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------------- 1829 (3956)
T PRK12467       1785 ARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ----------------------------------- 1829 (3956)
T ss_pred             CEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-----------------------------------
Confidence            9999986    4789999999999999999999999988752000                                   


Q ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-----CCCCCCccCCCCCc
Q 005406          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGSPNPAC  472 (698)
Q Consensus       399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~  472 (698)
                              ....+++|.+++|||++++++.+.|.+.+ ++.++|.||+||+++.++.....     .....++|+|++++
T Consensus      1830 --------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~ 1901 (3956)
T PRK12467       1830 --------VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANL 1901 (3956)
T ss_pred             --------cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCC
Confidence                    00014899999999999999999888766 57899999999999776654322     12356899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc-------CCCceecCcEEEEecCCcEEEEccCC
Q 005406          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-------~~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      +++|+| ++++.++.|.   .|||+|+|+++++||+++|+.|+++|.       +++||+|||+|++++||.|+|+||+|
T Consensus      1902 ~~~vld-~~~~~vp~G~---~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D 1977 (3956)
T PRK12467       1902 STYILD-ASLNPVPIGV---AGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRID 1977 (3956)
T ss_pred             EEEEEC-CCCCCCCCCC---ceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccC
Confidence            999998 5667666665   899999999999999999999999983       34699999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcC--CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      |+||+ +|++|+|.|||++|.++|+|.+|+|++.+  .++.++|+|++......        .         ..+.....
T Consensus      1978 ~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~--------~---------~~~~~~~~ 2039 (3956)
T PRK12467       1978 HQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLV--------D---------DDEAQVAL 2039 (3956)
T ss_pred             ceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccc--------c---------cccccccc
Confidence            99998 89999999999999999999999999854  35789999998653210        0         00011123


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMY  682 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly  682 (698)
                      .++|+++++ ..||.|++|..|++++++|      +|++||++|++|.+.+...+.+.|
T Consensus      2040 ~~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidr~~L~~~~~~~~~~~~ 2091 (3956)
T PRK12467       2040 RAILKNHLK-ASLPEYMVPAHLVFLARMP------LTPNGKLDRKALPAPDASELQQAY 2091 (3956)
T ss_pred             HHHHHHHHH-hhCchhhCchhhhhhhcCC------CCCCCCcchhhCCCCccccccccc
Confidence            456777775 7899999999999999999      999999999999876544433333

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-66  Score=584.47  Aligned_cols=513  Identities=25%  Similarity=0.333  Sum_probs=412.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|+++++++|+++|+.+.   +      +.+||.||+++++++|++|.+.|+++||+|+++++|+++|+++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            348999999999999999999764   2      3499999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCC--------------
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLP--------------  223 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------------  223 (698)
                      |+++|++++|+++.++.+++.+++++++++++|+++.....+.+..... ..+.++.++.......              
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  180 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALR  180 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeeccccccccccccccccccccc
Confidence            9999999999999999999999999999999999887655554433222 2333433321110000              


Q ss_pred             ---CCCCCCCceEeeHHHHHhcCCCC---CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc-c-C
Q 005406          224 ---SLPSTSGVKLISYLQLQSQGCSS---PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-F-Y  295 (698)
Q Consensus       224 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~-~  295 (698)
                         ...........+|.++.......   ........++++++++|||||||.||+|++||+++...+......+. + .
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  260 (573)
T PRK05605        181 KARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGD  260 (573)
T ss_pred             ccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCC
Confidence               00000111335677665432211   01223356799999999999999999999999999877654433222 2 3


Q ss_pred             CCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHH
Q 005406          296 PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE  373 (698)
Q Consensus       296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  373 (698)
                      .++++++.+|++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+......        
T Consensus       261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------  332 (573)
T PRK05605        261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG--------  332 (573)
T ss_pred             CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC--------
Confidence            4789999999999999876 456788999998877 799999999999999999999999998876321100        


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhc
Q 005406          374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS  453 (698)
Q Consensus       374 ~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~  453 (698)
                                                        ...+++|.+++||+++++++.+.+.+.+++++++.||+||+++++.
T Consensus       333 ----------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  378 (573)
T PRK05605        333 ----------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV  378 (573)
T ss_pred             ----------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhh
Confidence                                              0014799999999999999999999888999999999999987766


Q ss_pred             ccCCCC-CCCCCccCCCCCcEEEEEecCC-CCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEE
Q 005406          454 AIDKGD-NLSGHVGSPNPACEIKLVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL  531 (698)
Q Consensus       454 ~~~~~~-~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~  531 (698)
                      ...... ..++++|.|+++++++|+|.++ +..++.+.   .|||+++|+.++.||+++++.|.+.| .+|||+|||+|+
T Consensus       379 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~  454 (573)
T PRK05605        379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV  454 (573)
T ss_pred             cCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEE
Confidence            544332 4567999999999999999655 34444444   89999999999999999999999998 568999999999


Q ss_pred             EecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcc
Q 005406          532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFE  608 (698)
Q Consensus       532 ~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~  608 (698)
                      +|++|+++++||.||+||. +|++|+|.+||+++.+++.|.+++|+|.++   ++.++++|+++++.        ..+  
T Consensus       455 ~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~--------~~~--  523 (573)
T PRK05605        455 MEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA--------ALD--  523 (573)
T ss_pred             EcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCC--------CCC--
Confidence            9999999999999999996 899999999999999999999999998543   47888888887631        011  


Q ss_pred             cHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          609 DLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                                     .++|+++++ ..|+.|++|..|++++++|      +|.+||++|++|++++.+++.
T Consensus       524 ---------------~~~l~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        524 ---------------PEGLRAYCR-EHLTRYKVPRRFYHVDELP------RDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             ---------------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCcccccHHHHHHHHHHHhc
Confidence                           245566664 6789999999999999999      999999999999999877653

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2e-66  Score=584.30  Aligned_cols=517  Identities=24%  Similarity=0.318  Sum_probs=413.2

Q ss_pred             cCcccccCCCCccccccCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCC
Q 005406           55 KWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG  134 (698)
Q Consensus        55 ~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g  134 (698)
                      ...+||+.....       +.+...|+.++|.+.++++|+++|+.+.   .+    .+.+||+||.+++.++|++|.+.|
T Consensus        11 ~~~~~~~~~~~~-------~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~~l~~~~~~la~~L~~~g   76 (546)
T PLN02330         11 NEHIFRSRYPSV-------PVPDKLTLPDFVLQDAELYADKVAFVEA---VT----GKAVTYGEVVRDTRRFAKALRSLG   76 (546)
T ss_pred             cceeeccCCCCC-------CCCCCCcHHHHHhhhhhcCCCccEEEec---CC----CCcccHHHHHHHHHHHHHHHHHhC
Confidence            345677664443       1235688999999999999999999653   11    146999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEE
Q 005406          135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVV  214 (698)
Q Consensus       135 v~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~  214 (698)
                      +++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++......+....     .. ++.
T Consensus        77 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i~  150 (546)
T PLN02330         77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VIV  150 (546)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EEE
Confidence            999999999999999999999999999999999999999999999999999999999987665553321     12 333


Q ss_pred             eCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCC--CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccc
Q 005406          215 VGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV  292 (698)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  292 (698)
                      ++...          ......|.+++.......  .......++++++|+|||||||.||||+++|+++...+.......
T Consensus       151 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~  220 (546)
T PLN02330        151 LGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV  220 (546)
T ss_pred             ecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc
Confidence            33211          011245666664432211  112334578999999999999999999999999987665322111


Q ss_pred             --ccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhc
Q 005406          293 --QFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS  368 (698)
Q Consensus       293 --~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  368 (698)
                        .....++++.++|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.......  . 
T Consensus       221 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~-  297 (546)
T PLN02330        221 GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE--E-  297 (546)
T ss_pred             CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccc--c-
Confidence              1224568999999999999875 567889999998877 79999999999999999999999998876521000  0 


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcch
Q 005406          369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTE  447 (698)
Q Consensus       369 ~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE  447 (698)
                                                  ++   +.      ..++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus       298 ----------------------------~~---~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE  340 (546)
T PLN02330        298 ----------------------------FD---LS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE  340 (546)
T ss_pred             ----------------------------cc---cc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccc
Confidence                                        00   00      01589999999999999999999988 899999999999


Q ss_pred             hcchhcccC-CC----CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCC
Q 005406          448 TSCIISAID-KG----DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG  522 (698)
Q Consensus       448 ~~~~~~~~~-~~----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~g  522 (698)
                      ++.+..... +.    ....+++|.|+++++++|+|++++..++.++   .|||+++|++++.||+++++.+.+.|+.+|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g  417 (546)
T PLN02330        341 HSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDEDG  417 (546)
T ss_pred             cccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCCC
Confidence            976543221 11    1234689999999999999976677666665   899999999999999999999999998899


Q ss_pred             ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHH
Q 005406          523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDW  599 (698)
Q Consensus       523 w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~  599 (698)
                      ||+|||+|++++||.++++||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.++   ++.++++|++.+..    
T Consensus       418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~----  492 (546)
T PLN02330        418 WLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA----  492 (546)
T ss_pred             ceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC----
Confidence            9999999999999999999999999997 799999999999999999999999998543   56788998887532    


Q ss_pred             HHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          600 AASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                          ..          +       .++|+++++ ..|+.|++|+.|++++++|      +|++||++|++|++++...
T Consensus       493 ----~~----------~-------~~~l~~~~~-~~l~~~~~p~~~~~v~~iP------~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        493 ----KE----------S-------EEDILNFVA-ANVAHYKKVRVVQFVDSIP------KSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             ----CC----------C-------HHHHHHHHH-HhcccccCceEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence                00          0       234555554 6799999999999999999      9999999999999998653

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.9e-66  Score=585.49  Aligned_cols=523  Identities=20%  Similarity=0.253  Sum_probs=399.6

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .|+.++|.+.++++|+++|+...   +      ..+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            56899999999999999999763   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce-----eEEEEeCCCCCCCCCCCCCCCceE
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-----HLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+.++...++..     ..++.++.......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  159 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSEE  159 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccccc
Confidence            999999999999999999999999999999999887766555544333211     12344432211100     01112


Q ss_pred             eeHHHHHhcCCCCCCC----CCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhH
Q 005406          234 ISYLQLQSQGCSSPQP----FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI  309 (698)
Q Consensus       234 ~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (698)
                      .+++++.......+..    .....++++++|+|||||||.||||+++|+++............+...+++++.+|++|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~  239 (579)
T PLN03102        160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC  239 (579)
T ss_pred             cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence            4566665443221111    112457899999999999999999999999975544333333456677899999999999


Q ss_pred             HHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      +++...+.++..|+++++.+ +++..+++.|++++||++.++|+++..|.+......                       
T Consensus       240 ~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  296 (579)
T PLN03102        240 NGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------------  296 (579)
T ss_pred             cchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------------
Confidence            99888778888898888776 688899999999999999999999998876311000                       


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC---------
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---------  459 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---------  459 (698)
                                         ....+++.+++||+++++.+.++++. +|++++++||+||+++.++.....+         
T Consensus       297 -------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  356 (579)
T PLN03102        297 -------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQ  356 (579)
T ss_pred             -------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCccc
Confidence                               00035778999999999999998876 6999999999999986443221100         


Q ss_pred             -----CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec
Q 005406          460 -----NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (698)
Q Consensus       460 -----~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  534 (698)
                           ...+..+.++++  +++++.+.+..++.+ .+..|||+++|++++.|||++|+.|.+.| .+|||+|||+|++|+
T Consensus       357 ~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~-~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~  432 (579)
T PLN03102        357 QMELKARQGVSILGLAD--VDVKNKETQESVPRD-GKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHP  432 (579)
T ss_pred             ccccccCCCcccccccc--eEEeccccccccCCC-CCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcC
Confidence                 112333444444  455554444433321 11379999999999999999999999999 689999999999999


Q ss_pred             CCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHH
Q 005406          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLE  611 (698)
Q Consensus       535 ~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~  611 (698)
                      ||+++|+||.||+||. +|++|+|.+||+++.+||.|.+++|++.++   ++.++|+|++.++...        ......
T Consensus       433 dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~--------~~~~~~  503 (579)
T PLN03102        433 DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETT--------KEDRVD  503 (579)
T ss_pred             CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccc--------cccccc
Confidence            9999999999999996 899999999999999999999999999654   4689999998753210        000000


Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH-HHHHHhcc
Q 005406          612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA-ISNMYAEL  685 (698)
Q Consensus       612 ~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~-i~~ly~~~  685 (698)
                      +..       .-..+++++++ .+|+.|++|..|++++++|      +|++||++|++|++.+.+. .++-|...
T Consensus       504 ~~~-------~~~~~l~~~~~-~~L~~~~~P~~i~~~~~~P------~t~~gKi~r~~L~~~~~~~~~~~~~~~~  564 (579)
T PLN03102        504 KLV-------TRERDLIEYCR-ENLPHFMCPRKVVFLQELP------KNGNGKILKPKLRDIAKGLVVEDEDNVI  564 (579)
T ss_pred             ccc-------ccHHHHHHHHH-hhcccccCCeEEEEcccCC------CCCcccccHHHHHHHHHHhhhHHHHHHH
Confidence            000       01345677775 6799999999999999999      9999999999999998663 34444433

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.1e-66  Score=580.36  Aligned_cols=494  Identities=21%  Similarity=0.267  Sum_probs=403.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++|+++|+.+.         .+.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~~---------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   91 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIICG---------NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF   91 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            3567999999999999999999653         2469999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchH-----HHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN-----TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|++++++++.++.+++.++++.+++++++++.....     .........+.++.++........          
T Consensus        92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  161 (527)
T TIGR02275        92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE----------  161 (527)
T ss_pred             HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc----------
Confidence            99999999999999999999999999999999999865321     112222234455555554321100          


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                        ..+...+..... ..+.....++++++|+|||||||.||||++||+++...+......+.++++|++++.+|++|.++
T Consensus       162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~  238 (527)
T TIGR02275       162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP  238 (527)
T ss_pred             --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence              011111111111 11223456899999999999999999999999999988887777788899999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      +..  .+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+......                       
T Consensus       239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------  295 (527)
T TIGR02275       239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-----------------------  295 (527)
T ss_pred             hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-----------------------
Confidence            875  577889999998866 689999999999999999999999987765321100                       


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccC-CCCCCCCCccC
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID-KGDNLSGHVGS  467 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~-~~~~~~~~vG~  467 (698)
                                         ....++|.+++||+++++++.+.+.+.+|+++++.||+||++...+... ..+...+++|+
T Consensus       296 -------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  356 (527)
T TIGR02275       296 -------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR  356 (527)
T ss_pred             -------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence                               0014899999999999999999999989999999999999764433221 12234568999


Q ss_pred             CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      |+ ++++++|+| ++++..+.+.   .|||+++|++++.|||++++.|.+.|+.+|||+|||+|+++++|+++++||.||
T Consensus       357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d  432 (527)
T TIGR02275       357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKD  432 (527)
T ss_pred             CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccc
Confidence            99 589999999 4555555554   899999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      +||+ +|++|+|.+||++|.+||+|.+++|++.++   ++.++|+|+++++.         .                 .
T Consensus       433 ~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~---------~-----------------~  485 (527)
T TIGR02275       433 QINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA---------L-----------------K  485 (527)
T ss_pred             eeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC---------C-----------------C
Confidence            9996 899999999999999999999999999764   36788999887631         0                 1


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                      ..+|++++++.+++.|++|..|++++++|      +|++||++|++|+
T Consensus       486 ~~~l~~~l~~~~l~~~~~P~~i~~v~~iP------~t~sGKv~r~~L~  527 (527)
T TIGR02275       486 AAQLRRFLRERGLAEYKLPDRVEFIDSLP------LTAVGKIDKKALR  527 (527)
T ss_pred             HHHHHHHHHhCCCccccCCCEEEEeccCC------CCCccceeHHhcC
Confidence            34566666545699999999999999999      9999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.5e-67  Score=700.66  Aligned_cols=537  Identities=18%  Similarity=0.193  Sum_probs=438.2

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|.+++++|+.+++++++..+.....                   +......      ...+.+...+++
T Consensus      3669 ~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~------~~~~~~~~~~~~ 3723 (4334)
T PRK05691       3669 VERLLGEFKRLLLALVQGFHGDLSELPLLGEQERDF-------------------LLDGCNR------SERDYPLEQSYV 3723 (4334)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCChhhcCCCCHHHHHH-------------------HHHhhCC------ccCCCccccCHH
Confidence            457899999999999999999999999876542100                   0000000      001123456899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|+++++++||++|+.+.   ++      .+||+||+++++++|++|.+.|+++|++|+|++++++++++++|||+++|
T Consensus      3724 ~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG 3794 (4334)
T PRK05691       3724 RLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAG 3794 (4334)
T ss_pred             HHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhC
Confidence            9999999999999999765   44      39999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce--eEEEEeCCCCCCCCCCCCCCCceEeeHHHHH
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ  240 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (698)
                      +++|||+|.+|.+++.++++++++++++++.............+...  ..++..++                     ..
T Consensus      3795 ~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 3853 (4334)
T PRK05691       3795 AGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------------VQ 3853 (4334)
T ss_pred             cEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc---------------------cc
Confidence            99999999999999999999999999999987654433333222211  11222111                     10


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHH
Q 005406          241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (698)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (698)
                      ........+.....|+++|||+|||||||.||||+++|+++++.+.+....++++++|+++++.|++|+.+....+.+++
T Consensus      3854 ~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~ 3933 (4334)
T PRK05691       3854 AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPL 3933 (4334)
T ss_pred             cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHh
Confidence            00111112223457899999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             hCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchh
Q 005406          321 YGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (698)
Q Consensus       321 ~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (698)
                      .|+++++.+    .++..+.+.++++++|++.++|+++..+.+....                                 
T Consensus      3934 ~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------------------- 3980 (4334)
T PRK05691       3934 FGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------------------- 3980 (4334)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------------------
Confidence            999999886    4788999999999999999999999887642100                                 


Q ss_pred             hHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC----CCCCCccCCCCC
Q 005406          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD----NLSGHVGSPNPA  471 (698)
Q Consensus       397 ~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~  471 (698)
                                  ..++||.+++|||++++++.+.|.+.+ +++++|.||+||++..++......    ....++|+|++|
T Consensus      3981 ------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~ 4048 (4334)
T PRK05691       3981 ------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDN 4048 (4334)
T ss_pred             ------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCC
Confidence                        014899999999999999999887764 789999999999998776543222    233579999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc-------CCCceecCcEEEEecCCcEEEEccC
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRK  544 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-------~~gw~~TGDlg~~~~~G~l~i~GR~  544 (698)
                      ++++|+| +.+..++.|.   .|||||+|+++++||+++|+.|+++|.       +++||+|||+|++++||.|+|+||+
T Consensus      4049 ~~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~ 4124 (4334)
T PRK05691       4049 NRLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRI 4124 (4334)
T ss_pred             CEEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEeccc
Confidence            9999998 5566666665   899999999999999999999999993       4579999999999999999999999


Q ss_pred             CCeEecCCceeecchHHHHHHhcCcCceeEEEEEc--CCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD--SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~--~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      |++||+ +|++|++.|||++|.++|+|.+|+|+..  ..++.++|++++.....                  ..    ..
T Consensus      4125 d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------------~~----~~ 4181 (4334)
T PRK05691       4125 DHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------------AQ----GA 4181 (4334)
T ss_pred             CCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc------------------cc----hH
Confidence            999998 8999999999999999999999988753  33578999999875320                  01    12


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                      ..++|++.++ .+||.|++|..++.++++|      +|++|||+|++|.+.
T Consensus      4182 ~~~~l~~~l~-~~Lp~ymvP~~~~~~~~lP------~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4182 LLERIKQRLR-AELPDYMVPLHWLWLDRLP------LNANGKLDRKALPAL 4225 (4334)
T ss_pred             HHHHHHHHHH-hhCChhhcCcceeecccCC------CCCCCcccHhhcCCC
Confidence            2455666665 7899999999999999999      999999999999764

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-67  Score=705.94  Aligned_cols=533  Identities=17%  Similarity=0.193  Sum_probs=438.1

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|.++.++|+.++++++|.......                   .+......      ...+.+...+++
T Consensus       460 i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~~-------------------~~~~~~~~------~~~~~~~~~~~~  514 (5163)
T PRK12316        460 VERMARHWQNLLRGMVENPQARVDELPMLDAEERG-------------------QLVEGWNA------TAAEYPLQRGVH  514 (5163)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccCCCCCHHHHH-------------------HHHHHhcC------ccccCCCCCCHH
Confidence            45789999999999999999999999988755310                   00000000      011123356899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|.+.++++||++|+.+.   +      +.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|
T Consensus       515 ~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG  585 (5163)
T PRK12316        515 RLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG  585 (5163)
T ss_pred             HHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            9999999999999999763   2      459999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      +++||++|.++.+++.++++++++++++++......+.    ...... ++.++...                  .... 
T Consensus       586 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~------------------~~~~-  641 (5163)
T PRK12316        586 GAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGVQ-VLDLDRPA------------------AWLE-  641 (5163)
T ss_pred             CEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCce-EEEecCcc------------------hhhc-
Confidence            99999999999999999999999999999875433221    111111 22222111                  0000 


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                      ......+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++...+.+++.|
T Consensus       642 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G  721 (5163)
T PRK12316        642 GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSG  721 (5163)
T ss_pred             cCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCC
Confidence            00111222345789999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             cEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406          323 VAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (698)
Q Consensus       323 ~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (698)
                      +++++.+    .++..+++.++++++|++.++|+++..|.+....                                   
T Consensus       722 ~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----------------------------------  766 (5163)
T PRK12316        722 ARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV-----------------------------------  766 (5163)
T ss_pred             CEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc-----------------------------------
Confidence            9999985    6889999999999999999999999888642000                                   


Q ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCC--CCCCCCCccCCCCCcEEE
Q 005406          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK--GDNLSGHVGSPNPACEIK  475 (698)
Q Consensus       399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~  475 (698)
                               ...+++|.+++||+++++++.+.|.+.+ +++++|.||+||+++.++....  ......++|+|++|++++
T Consensus       767 ---------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~  837 (5163)
T PRK12316        767 ---------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACY  837 (5163)
T ss_pred             ---------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEE
Confidence                     0014899999999999999999887655 7899999999999865543322  224456899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc------CCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      |+| +++..++.|.   .|||+|+|+++++||+++|+.|+++|.      +++||+|||+|++++||.|+|+||+||+||
T Consensus       838 i~d-~~~~~~p~G~---~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik  913 (5163)
T PRK12316        838 ILD-ANLEPVPVGV---LGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVK  913 (5163)
T ss_pred             EEC-CCCCCCCCCC---ceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEE
Confidence            999 5566666665   899999999999999999999999883      456999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      + +|++|+|.|||++|.+||+|.+|+|++.+ ++.++|+|++.++.        .                 ...++|++
T Consensus       914 ~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~--------~-----------------~~~~~l~~  966 (5163)
T PRK12316        914 L-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEG--------G-----------------DWREALKA  966 (5163)
T ss_pred             E-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCC--------C-----------------CCHHHHHH
Confidence            8 89999999999999999999999999987 78999999987632        0                 11356677


Q ss_pred             HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      +++ .+||.|++|+.|++++++|      +|++||++|++|.+.+.
T Consensus       967 ~l~-~~Lp~y~vP~~i~~v~~lP------~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        967 HLA-ASLPEYMVPAQWLALERLP------LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             HHH-hhCCCccCCCeEEEHhhCC------CCCCCChhHHhhcCccc
Confidence            775 7899999999999999999      99999999999987543

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-66  Score=577.22  Aligned_cols=485  Identities=24%  Similarity=0.317  Sum_probs=401.2

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..+.+.|++.++.+||++|+.+.         .+.+||+||+++++++|++|++ .|+++|++|+++++|+++|+++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~---------~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE---------EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC---------CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            35788999999999999999652         2569999999999999999985 7999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|++++++.+++.++++.+++++++++......+........ ...++.+.                  ++.
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~  133 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT------------------SLK  133 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec------------------chH
Confidence            99999999999999999999999999999999998776555444332211 12222222                  222


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QI  316 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~  316 (698)
                      ++....   ........++++++|+|||||||.||+|+++|.++..........+++..+|++++.+|++|.+++.. .+
T Consensus       134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  210 (496)
T PRK06839        134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF  210 (496)
T ss_pred             hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence            222211   11223456789999999999999999999999998776655555677889999999999999999876 46


Q ss_pred             HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      .++..|+++++.+ .++..+++.++++++|++.++|.++..+.......                               
T Consensus       211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------  259 (496)
T PRK06839        211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------------  259 (496)
T ss_pred             HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------------
Confidence            7889999988876 79999999999999999999999999887631100                               


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC--CCCCCccCCCCCcE
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPNPACE  473 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~  473 (698)
                                 .....++|.+++||+++++++.+.++.. |+++++.||+||++..++......  ...+++|+|+++++
T Consensus       260 -----------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~  327 (496)
T PRK06839        260 -----------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD  327 (496)
T ss_pred             -----------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence                       0011589999999999999999999886 999999999999987554433222  45689999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCc
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG  553 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G  553 (698)
                      ++|+|+ ++..++.++   .|||+|+|+.++.||+++++.+...+ .+|||+|||+|+++++|.++++||.||+||. +|
T Consensus       328 ~~i~d~-~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G  401 (496)
T PRK06839        328 YELIDE-NKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GG  401 (496)
T ss_pred             EEEECC-CcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEE-CC
Confidence            999994 445455554   89999999999999999999999888 6899999999999999999999999999995 89


Q ss_pred             eeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406          554 EYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV  630 (698)
Q Consensus       554 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  630 (698)
                      ++|+|.+||+++.++|+|.+++|+|.++   ++.++++|+++++.        ..+                 .++|+++
T Consensus       402 ~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l~~~  456 (496)
T PRK06839        402 ENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSS--------VLI-----------------EKDVIEH  456 (496)
T ss_pred             EEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC--------CCC-----------------HHHHHHH
Confidence            9999999999999999999999999653   46789999987632        011                 2455666


Q ss_pred             HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      ++ ..|+.|++|..|++++++|      +|++||++|++|+++.+
T Consensus       457 ~~-~~l~~~~~P~~~~~v~~~P------~t~~GKi~r~~l~~~~~  494 (496)
T PRK06839        457 CR-LFLAKYKIPKEIVFLKELP------KNATGKIQKAQLVNQLK  494 (496)
T ss_pred             HH-hhCcCCCCCcEEEEeccCC------CCccccccHHHHHHHhh
Confidence            64 6799999999999999999      99999999999998764

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-66  Score=574.44  Aligned_cols=475  Identities=20%  Similarity=0.234  Sum_probs=393.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      +++.+.|+++++++||++|+.+.   +      +.+||.||.+++.++|++|.+.|. +|++|+|+++|+++|+++++||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            46789999999999999999653   2      459999999999999999999984 7999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.++++.+++++++++......+...      ...++.++.                  +.+
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~------------------~~~  126 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE------------------WKR  126 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh------------------hhh
Confidence            99999999999999999999999999999999987544332211      011222211                  111


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (698)
                      ....... .........+++++|+|||||||.||||+++|++++..+......+++.++|+++...|++|..++...+.+
T Consensus       127 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~  205 (487)
T PRK07638        127 MIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST  205 (487)
T ss_pred             hhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence            1111111 011112235678999999999999999999999999888877777888999999999999999988778889


Q ss_pred             HHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      ++.|+++++.+ +++..+++.++++++|+++++|+++..+.+..                                    
T Consensus       206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------  249 (487)
T PRK07638        206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN------------------------------------  249 (487)
T ss_pred             HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc------------------------------------
Confidence            99999999887 68999999999999999999999998887520                                    


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEE
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIK  475 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~  475 (698)
                                ....+.+.+++||++++++..+++...+ ++.+++.||+||++.++...... ....+++|+|+++++++
T Consensus       250 ----------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  319 (487)
T PRK07638        250 ----------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR  319 (487)
T ss_pred             ----------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence                      0012455678899999999999999888 78999999999998766544322 24567899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCcee
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~  555 (698)
                      |+| +++..++.+   +.|||+++|+.++.|||++++.+.+.+ .+|||+|||+|++|++|+++++||++|+||+ +|++
T Consensus       320 i~d-~~g~~~~~g---~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~  393 (487)
T PRK07638        320 ICN-EAGEEVQKG---EIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGIN  393 (487)
T ss_pred             EEC-CCCCCCCCC---CCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEE
Confidence            999 455655555   489999999999999999999887765 7899999999999999999999999999997 8999


Q ss_pred             ecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005406          556 VAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGK  632 (698)
Q Consensus       556 v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  632 (698)
                      |+|.+||+++.++|+|.+++|++..+   ++.++++|+....                             .++++++++
T Consensus       394 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------------------------~~~l~~~~~  444 (487)
T PRK07638        394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT-----------------------------KQQLKSFCL  444 (487)
T ss_pred             ECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC-----------------------------HHHHHHHHH
Confidence            99999999999999999999999654   4677888764221                             344555554


Q ss_pred             hCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          633 EGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       633 ~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                       ..|+.|++|+.|++++++|      +|++||++|++|++++.+
T Consensus       445 -~~l~~~~~p~~i~~v~~iP------~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        445 -QRLSSFKIPKEWHFVDEIP------YTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             -HHhhcccCCcEEEEecccC------CCCcccccHHHHHHHHhc
Confidence             6789999999999999999      999999999999988754

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=5.9e-67  Score=646.03  Aligned_cols=529  Identities=17%  Similarity=0.189  Sum_probs=428.8

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..++++|.+++++++.+|+.++++++|......  .   +   +..      +    +. .       ..+. ...++.
T Consensus       409 i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~--~---~---~~~------~----~~-~-------~~~~-~~~~l~  461 (1296)
T PRK10252        409 LIAHAERLKALIAQFAADPALLCGDVDILLPGEY--A---Q---LAQ------V----NA-T-------AVEI-PETTLS  461 (1296)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHH--H---H---HHH------h----cC-C-------CCCC-CcCCHH
Confidence            3467889999999999999999999998764421  0   0   000      0    00 0       0011 236899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|++.++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+|+++|+++++++++||+++|
T Consensus       462 ~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G  532 (1296)
T PRK10252        462 ALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAG  532 (1296)
T ss_pred             HHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            9999999999999999654   2      359999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      ++++|++++++.+++.++++++++++++++.+....+..    .+.+.. +.                     +......
T Consensus       533 ~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~-~~---------------------~~~~~~~  586 (1296)
T PRK10252        533 AAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLTS-LC---------------------YNAPLAP  586 (1296)
T ss_pred             CEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCcee-ee---------------------ccccccc
Confidence            999999999999999999999999999998765443221    111111 11                     1110000


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                      .  ...+.....+++++||+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|.+++...+.+++.|
T Consensus       587 ~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G  664 (1296)
T PRK10252        587 Q--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAG  664 (1296)
T ss_pred             c--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCC
Confidence            0  00111223678999999999999999999999999999999888889999999999999999999998899999999


Q ss_pred             cEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406          323 VAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (698)
Q Consensus       323 ~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (698)
                      +++++.+    .++..+.+.++++++|++.++|+++..+.+.......                                
T Consensus       665 ~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~--------------------------------  712 (1296)
T PRK10252        665 AKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA--------------------------------  712 (1296)
T ss_pred             CEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc--------------------------------
Confidence            9999976    4888999999999999999999999887653211000                                


Q ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-------CCCCCccCCCCC
Q 005406          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-------NLSGHVGSPNPA  471 (698)
Q Consensus       399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~vG~p~~~  471 (698)
                              .....++|.+++||+++++++.+.|.+.++++++|.||+||++..++......       ....++|+|+++
T Consensus       713 --------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~  784 (1296)
T PRK10252        713 --------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWN  784 (1296)
T ss_pred             --------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCC
Confidence                    00014799999999999999999999888999999999999987666543221       234679999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC------CCceecCcEEEEecCCcEEEEccCC
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG------DGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~------~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      ++++|+| ++++.++.|.   .|||+|+|+++++||+++|+.|++.|..      ++||+|||+|++++||.++|+||.|
T Consensus       785 ~~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d  860 (1296)
T PRK10252        785 TGLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSD  860 (1296)
T ss_pred             CEEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccC
Confidence            9999999 5666666665   8999999999999999999999999843      4599999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEc-------CC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCC
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD-------SF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND  616 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~-------~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (698)
                      ++||+ +|++|+|.|||++|.+||+|.+++|++.       ..  ...++|+|++..+.        ..+          
T Consensus       861 ~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~--------~~~----------  921 (1296)
T PRK10252        861 DQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL--------PLD----------  921 (1296)
T ss_pred             CeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC--------CCC----------
Confidence            99998 8999999999999999999999987653       11  24799999987531        001          


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          617 PRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       617 ~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                             .++|+++++ .+||.|++|..++.++++|      +|++||++|++|.+
T Consensus       922 -------~~~l~~~l~-~~Lp~~~~P~~~~~~~~lP------~t~~GKidr~~L~~  963 (1296)
T PRK10252        922 -------TSALQAQLR-ERLPPHMVPVVLLQLDQLP------LSANGKLDRKALPL  963 (1296)
T ss_pred             -------HHHHHHHHH-hhCchhcCCcEEEEecCCC------CCCCcChhHHhcCC
Confidence                   344555664 7899999999999999999      99999999999965

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-66  Score=578.86  Aligned_cols=498  Identities=22%  Similarity=0.271  Sum_probs=407.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|...++++|+++|+.+.   +      +.+||+||.+++.++|..|++.|+++|++|+|+++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4678999999999999999999653   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.+++++++++.++++.+....+.......+....++.++...            ...++
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  143 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY  143 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence            999999999999999999999999999999999999876555544444444445555554321            12356


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc--cccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      +++...............++++++|+|||||||.||||+++|+++...+......  .+...+|+++.++|++|.+++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  223 (528)
T PRK07470        144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ  223 (528)
T ss_pred             HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence            6665443222223334577999999999999999999999999997655432222  25678899999999999999876


Q ss_pred             HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005406          315 QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (698)
                      .+ .++.|++.++.+   .++..+++.|+++++|++.++|+++..+.+....                            
T Consensus       224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  274 (528)
T PRK07470        224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV----------------------------  274 (528)
T ss_pred             HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc----------------------------
Confidence            44 567777777664   5889999999999999999999999887652100                            


Q ss_pred             CCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC--------CCCCCC
Q 005406          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK--------GDNLSG  463 (698)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~--------~~~~~~  463 (698)
                                    .....+++|.+++||+++++...+++...+|.++++.||+||+++.++....        .....+
T Consensus       275 --------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~  340 (528)
T PRK07470        275 --------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG  340 (528)
T ss_pred             --------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence                          0001158999999999999999999988889999999999999876554322        123457


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|.|+++++++++| +++..++.++   .|||+++|+.++.||+++++.+++.| .+|||+|||+|+++++|++++.||
T Consensus       341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR  415 (528)
T PRK07470        341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR  415 (528)
T ss_pred             ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence            899999999999999 5566666554   89999999999999999999999888 689999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||+ +|++|+|.+||+++.++|.|.+|+|++.++   ++.+++++++.+..        ..+              
T Consensus       416 ~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~--------------  472 (528)
T PRK07470        416 ASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGA--------PVD--------------  472 (528)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCC--------CCC--------------
Confidence            9999996 899999999999999999999999999654   35678888876531        011              


Q ss_pred             HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                         .++++++++ ..|+.|++|..+++++++|      +|++||++|+.|++.|++
T Consensus       473 ---~~~~~~~l~-~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        473 ---EAELLAWLD-GKVARYKLPKRFFFWDALP------KSGYGKITKKMVREELEE  518 (528)
T ss_pred             ---HHHHHHHHH-HhhhcCCCCcEEEEeccCC------CCCcccccHHHHHHHHHh
Confidence               234555554 6789999999999999999      999999999999988764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.4e-65  Score=578.04  Aligned_cols=508  Identities=20%  Similarity=0.279  Sum_probs=416.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|++.++++||++|+.+.   ++     +.+||+||+++++++|++|++.|+++||+|+++++|+++|+++++|
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA   93 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA   93 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357999999999999999998653   22     4589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc-----hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      |+++|++++|+++.++.+++.++++.+++++++++...     ...+......++.++.++.++......         .
T Consensus        94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  164 (547)
T PRK06087         94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------S  164 (547)
T ss_pred             HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------C
Confidence            99999999999999999999999999999999997532     233444444556666666665432110         1


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      ..++.++....... .......++++++|+|||||||.||||++||+++..........+++.++|++++.+|++|.+++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  243 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGF  243 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHH
Confidence            13455555432211 12234567899999999999999999999999998888777777788999999999999999998


Q ss_pred             HH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          313 AN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      .. .+.+++.|+++++.+ .++..+++.++++++|+++++|..+..++......                          
T Consensus       244 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------------  297 (547)
T PRK06087        244 LHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------------  297 (547)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC--------------------------
Confidence            76 667888999999887 78999999999999999998877766665421100                          


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC--CCCCCccCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSP  468 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p  468 (698)
                                      ....+++|.+++||+++++++.+.+... |+++++.||+||++...+......  ...+++|.|
T Consensus       298 ----------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~  360 (547)
T PRK06087        298 ----------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYA  360 (547)
T ss_pred             ----------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCcc
Confidence                            0011589999999999999999988774 999999999999987665433221  234678999


Q ss_pred             CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeE
Q 005406          469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (698)
Q Consensus       469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~i  548 (698)
                      +++++++++| +++..++.+.   .|||+++|+.++.||+++++.+...|+.+|||+|||+|++|++|.++++||.+|+|
T Consensus       361 ~~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  436 (547)
T PRK06087        361 AAGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII  436 (547)
T ss_pred             CCCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhh
Confidence            9999999999 5556555554   89999999999999999999999999889999999999999999999999999999


Q ss_pred             ecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHH
Q 005406          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLA  625 (698)
Q Consensus       549 kls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  625 (698)
                      +. +|++|+|.+||+++.++|+|.+++|++.++   ++.++++|++++...       ..                 ..+
T Consensus       437 ~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~-------~~-----------------~~~  491 (547)
T PRK06087        437 VR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH-------SL-----------------TLE  491 (547)
T ss_pred             hc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC-------CC-----------------CHH
Confidence            96 899999999999999999999999999643   467889988765210       00                 023


Q ss_pred             HHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          626 EMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       626 ~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                      ++.+++++..++.|++|..|.+++++|      +|.+||++|++|++.+.+++..-
T Consensus       492 ~~~~~~~~~~l~~~~~P~~i~~v~~iP------~t~sGK~~r~~l~~~~~~~~~~~  541 (547)
T PRK06087        492 EVVAFFSRKRVAKYKYPEHIVVIDKLP------RTASGKIQKFLLRKDIMRRLTQD  541 (547)
T ss_pred             HHHHHHHhccccccCCCeEEEEeccCC------CCCCCcCcHHHHHHHHHHHhhhh
Confidence            455554446899999999999999999      99999999999999998876543

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-65  Score=576.32  Aligned_cols=506  Identities=22%  Similarity=0.297  Sum_probs=410.4

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.++|+..+.++|++.++.++  .+   ++++.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++||
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRR--VE---GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEee--cc---CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999888654  12   23567999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.++++.+++++++++.+....+.+....++.++.++..++.... .    .....+.++++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~  159 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHL-P----AGSTPLLCYET  159 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCcc-c----cCCcccccHHH
Confidence            999999999999999999999999999999999987766666655566666666665543211 0    01133567777


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHH--HhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV--AGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (698)
                      +....... .......++++++++|||||||.||||++||++++...  ......+++.++|++++.+|++|.+++...+
T Consensus       160 l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~  238 (539)
T PRK07008        160 LVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY  238 (539)
T ss_pred             HhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence            76543221 12234567899999999999999999999999986432  2233457788899999999999998887778


Q ss_pred             HHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCc
Q 005406          317 VSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (698)
Q Consensus       317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (698)
                      .++..|+++++.+  +++..+++.++++++|++.++|+++..+.+......                             
T Consensus       239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------  289 (539)
T PRK07008        239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----------------------------  289 (539)
T ss_pred             HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------------
Confidence            8899999999875  689999999999999999999999988875321100                             


Q ss_pred             hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CCCC
Q 005406          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLSG  463 (698)
Q Consensus       395 ~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~~~  463 (698)
                                   ...+++|.+++||+++++++.+.+.+.+++++++.||+||++..++......           ....
T Consensus       290 -------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (539)
T PRK07008        290 -------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE  356 (539)
T ss_pred             -------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence                         0015899999999999999999999889999999999999987554332110           1236


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+|+|+++++|+| +++...+.+. +..|||+++|++++.|||++++   ..+ .+|||+|||+|++|+||+++++||
T Consensus       357 ~~G~p~pg~~~~i~d-~~~~~~~~~~-~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR  430 (539)
T PRK07008        357 KQGRVIYGVDMKIVG-DDGRELPWDG-KAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR  430 (539)
T ss_pred             cCCccccceEEEEEC-CCCCccCCCC-CcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence            799999999999999 4555444321 1369999999999999999984   334 379999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||. +|++|+|.+||+++..+|.|.+++|++.++   ++.++++|+..++.        ..               
T Consensus       431 ~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~---------------  486 (539)
T PRK07008        431 SKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGA--------EV---------------  486 (539)
T ss_pred             ccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCC--------cc---------------
Confidence            9999995 899999999999999999999999999654   46778888776532        00               


Q ss_pred             HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                        ..++++++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.+
T Consensus       487 --~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        487 --TREELLAFYE-GKVAKWWIPDDVVFVDAIP------HTATGKLQKLKLREQFRD  533 (539)
T ss_pred             --CHHHHHHHHH-hhcccccCCeEEEEecCCC------CCCccceeHHHHHHHHHh
Confidence              1345666665 6899999999999999999      999999999999988765

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-66  Score=579.53  Aligned_cols=503  Identities=24%  Similarity=0.334  Sum_probs=419.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .-+|+.+.|+.+++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~   85 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL   85 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999764   3      349999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++......+.......+..+.++..++...          ....++
T Consensus        86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  155 (542)
T PRK07786         86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD----------DSVLGY  155 (542)
T ss_pred             HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc----------ccccCH
Confidence            9999999999999999999999999999999999998776655544444556666666543210          022456


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccccc-CCCcEEEEcCChhhHHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF-YPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~~  315 (698)
                      ++++...... .+......+++++++|||||||.||||++||+++...+......+++ ..++++++.+|++|.+++...
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  234 (542)
T PRK07786        156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM  234 (542)
T ss_pred             HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence            6665443221 12234456789999999999999999999999998887766666666 678999999999999999888


Q ss_pred             HHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      +.++..|+++++.+   .++..+++.++++++|.++++|+++..+........                           
T Consensus       235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---------------------------  287 (542)
T PRK07786        235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---------------------------  287 (542)
T ss_pred             HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---------------------------
Confidence            89999999999865   589999999999999999999999998876311000                           


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC--CCCCCccCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPN  469 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~  469 (698)
                          .            ..++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+.+......  ...+++|+|+
T Consensus       288 ----~------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  351 (542)
T PRK07786        288 ----R------------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI  351 (542)
T ss_pred             ----c------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence                0            02699999999999999999999888 789999999999987655433222  3457899999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      +++.++|+| +++...+.+.   .|||+++|+.++.||+++++.|++.| .+|||+|||+++++++|.++++||.||+||
T Consensus       352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~  426 (542)
T PRK07786        352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMII  426 (542)
T ss_pred             CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEE
Confidence            999999999 5566665554   89999999999999999999999999 689999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|++|+|.+||+++.++|.|.+++|++.++   ++.+++++++.....         .               ...++
T Consensus       427 ~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~---------------~~~~~  481 (542)
T PRK07786        427 S-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA---------A---------------LTLED  481 (542)
T ss_pred             e-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC---------C---------------CCHHH
Confidence            6 899999999999999999999999998653   467888888765310         0               01345


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                      +.++++ .+++.|++|..+++++++|      +|++||++|++|++.|.+.-.
T Consensus       482 l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~~~~~  527 (542)
T PRK07786        482 LAEFLT-DRLARYKHPKALEIVDALP------RNPAGKVLKTELRERYGACVN  527 (542)
T ss_pred             HHHHHH-hhccCCCCCCEEEEeccCC------CCCcccccHHHHHHHHHhhhc
Confidence            566664 6799999999999999999      999999999999999987543

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.2e-67  Score=702.09  Aligned_cols=550  Identities=17%  Similarity=0.230  Sum_probs=447.3

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|.++.++|+.+++++++........                   +.....      ...++.+...+++
T Consensus      4500 ~~~l~~~f~~~L~~l~~~p~~~~~~l~~~~~~~~~~-------------------~~~~~~------~~~~~~~~~~~~~ 4554 (5163)
T PRK12316       4500 IERLARHLTNLLEAMAEDPQRRLGELQLLEKAEQQR-------------------IVALWN------RTDAGYPATRCVH 4554 (5163)
T ss_pred             HHHHHHHHHHHHHHHhhCcccchhhhccCCHHHHHH-------------------HHhccC------CCCcCCCccccHH
Confidence            457899999999999999999999999876542100                   000000      0011223457899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|+++++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|++++|||+++|
T Consensus      4555 ~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG 4625 (5163)
T PRK12316       4555 QLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAG 4625 (5163)
T ss_pred             HHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            9999999999999999764   2      459999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      ++++|++|.++.+++.+++++++++++|++......+.    ...... ++.++...                  ++  .
T Consensus      4626 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~------------------~~--~ 4680 (5163)
T PRK12316       4626 GAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLP----IPDGLA-SLALDRDE------------------DW--E 4680 (5163)
T ss_pred             cEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-eEeecchh------------------hc--c
Confidence            99999999999999999999999999999876543321    111111 11111100                  00  0


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                      ......+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+.+....+.+++.|
T Consensus      4681 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G 4760 (5163)
T PRK12316       4681 GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYHPLING 4760 (5163)
T ss_pred             cCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHHHHHHHHhCC
Confidence            00111223345789999999999999999999999999999998888889999999999999999999998899999999


Q ss_pred             cEEEEeCC---ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          323 VAVGFYQG---DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       323 ~~~~~~~~---~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      +++++.+.   ++..+++.|+++++|+++++|++++.+.+.....                                   
T Consensus      4761 ~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----------------------------------- 4805 (5163)
T PRK12316       4761 ASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD----------------------------------- 4805 (5163)
T ss_pred             CEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc-----------------------------------
Confidence            99999872   7899999999999999999999999887632110                                   


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCCCccCCCCCcE
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGHVGSPNPACE  473 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~  473 (698)
                              ...+++|.+++|||++++++.+.+.+.+ +++++|+||+||++++++......     ....++|+|+++++
T Consensus      4806 --------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 4877 (5163)
T PRK12316       4806 --------GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRS 4877 (5163)
T ss_pred             --------cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCE
Confidence                    0115899999999999999997776554 789999999999998766544322     34568999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC-------CCceecCcEEEEecCCcEEEEccCCC
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG-------DGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~-------~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      ++|+| +++..++.|.   .|||+|+|+++++|||++|+.|+++|..       ++||+|||+|+++++|.++|+||+|+
T Consensus      4878 ~~i~d-~~~~~~p~g~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~ 4953 (5163)
T PRK12316       4878 GYVLD-GQLNPLPVGV---AGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDH 4953 (5163)
T ss_pred             EEEEC-CCCCcCCCCC---CceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccc
Confidence            99999 5566666665   8999999999999999999999999843       46999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL  624 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  624 (698)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.++  ++.++|+|++......                 ...+....+.
T Consensus      4954 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~-----------------~~~~~~~~~~ 5015 (5163)
T PRK12316       4954 QVKI-RGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA-----------------DADEAQAELR 5015 (5163)
T ss_pred             eEee-ccEeecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc-----------------cccccchhhH
Confidence            9998 899999999999999999999999998543  5689999998763210                 1112233456


Q ss_pred             HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHh
Q 005406          625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA  683 (698)
Q Consensus       625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~  683 (698)
                      ++|++.++ ..||.|++|..+++++++|      +|++||++|++|.+.+.+.+++.|.
T Consensus      5016 ~~l~~~l~-~~lp~y~vP~~~~~~~~lP------~t~~GKvdR~~L~~~~~~~~~~~~~ 5067 (5163)
T PRK12316       5016 DELKAALR-ERLPEYMVPAHLVFLARMP------LTPNGKLDRKALPQPDASLLQQAYV 5067 (5163)
T ss_pred             HHHHHHHh-ccCchhhCCcceeecccCC------CCCCcccChhhcCCccccccccccC
Confidence            77788775 8999999999999999999      9999999999999888776666554

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.2e-65  Score=574.87  Aligned_cols=503  Identities=22%  Similarity=0.264  Sum_probs=407.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|++++|++.++++||++|+.+.   +. .++.+.+||.||.++++++|++|.++|+++|++|+|+++|+.+|+++++
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l   80 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF   80 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999875   32 2345789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcC-CceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI-PSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....+.+..... ..++.++..+......        ....+
T Consensus        81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  152 (517)
T PRK08008         81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPAD--------DGVSS  152 (517)
T ss_pred             HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCccc--------ccccC
Confidence            99999999999999999999999999999999999988776665554432 3345555554321110        11234


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (698)
                      ++++............+..++++++|+|||||||.||||++||+++............+..++++++.+|++|..+... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (517)
T PRK08008        153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA  232 (517)
T ss_pred             HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence            5554433221111223446789999999999999999999999999865433333345778999999999999877665 


Q ss_pred             HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.......                             
T Consensus       233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------  283 (517)
T PRK08008        233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA-----------------------------  283 (517)
T ss_pred             HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-----------------------------
Confidence            667888999999887 68999999999999999999999988776421000                             


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCc
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPAC  472 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~  472 (698)
                      .             .....++.+.++ .+++++....|.+.+|+++++.||+||+++.++...+. ....+++|.|++++
T Consensus       284 ~-------------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~  349 (517)
T PRK08008        284 N-------------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY  349 (517)
T ss_pred             c-------------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence            0             000357777665 47899999888888899999999999998655544332 24467899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeC---CCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          473 EIKLVDVPEMNYTSEDQPHPRGEICVRG---PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g---~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      +++|+| +++..++.+.   .|||+++|   ++++.|||++++.|++.|+.+|||+|||+|++|++|.++++||.||+||
T Consensus       350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  425 (517)
T PRK08008        350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK  425 (517)
T ss_pred             EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence            999999 5566666655   89999998   6899999999999999998899999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|++|+|.+||+++.++|.|.+++|+|.++   ++.++++|+++++.        ..+                 .++
T Consensus       426 ~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~  479 (517)
T PRK08008        426 R-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE--------TLS-----------------EEE  479 (517)
T ss_pred             e-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC--------CCC-----------------HHH
Confidence            6 799999999999999999999999999654   46789999987632        011                 345


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                      |.++++ .+|+.|++|..+++++++|      +|++||++|+.|+
T Consensus       480 l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~gK~~r~~l~  517 (517)
T PRK08008        480 FFAFCE-QNMAKFKVPSYLEIRKDLP------RNCSGKIIKKNLK  517 (517)
T ss_pred             HHHHHH-hhcccccCCcEEEEeccCC------CCCccceehhhcC
Confidence            666665 6799999999999999999      9999999999864

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.2e-65  Score=571.09  Aligned_cols=495  Identities=26%  Similarity=0.375  Sum_probs=408.6

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.+++..++ .+|++.|+...   +     .+.+||+||.+++.++|++|++.|+++|++|+++++|+++++++++||
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~---~-----~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~   73 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP---D-----GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT   73 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC---C-----CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            46899999999 99999998653   2     256999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++..+++.+++++++++......+....... ....++.++....             ..+.+
T Consensus        74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~  139 (504)
T PRK07514         74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE  139 (504)
T ss_pred             HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence            999999999999999999999999999999999987766555443322 2222333332110             11122


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIV  317 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~  317 (698)
                      ..... ..........++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++.. .+.
T Consensus       140 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  218 (504)
T PRK07514        140 AAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV  218 (504)
T ss_pred             hhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence            11111 1111223456899999999999999999999999999998877777788899999999999999999876 567


Q ss_pred             HHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchh
Q 005406          318 SVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (698)
Q Consensus       318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (698)
                      +++.|+++++.+ .++..+++.+  .++|++.++|.++..+.....                                  
T Consensus       219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~----------------------------------  262 (504)
T PRK07514        219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR----------------------------------  262 (504)
T ss_pred             HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------------
Confidence            899999999887 6888999988  479999999999988765200                                  


Q ss_pred             hHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEE
Q 005406          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKL  476 (698)
Q Consensus       397 ~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i  476 (698)
                              ......+++|.+++||+++++++.+.|...+++++++.||+||++.............+++|.|+++++++|
T Consensus       263 --------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  334 (504)
T PRK07514        263 --------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV  334 (504)
T ss_pred             --------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence                    000111589999999999999999999998999999999999998655543333345678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceee
Q 005406          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (698)
Q Consensus       477 ~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v  556 (698)
                      +|++++..++.+.   .|||+++|++++.||+++++.+++.|..+|||+|||+|+++++|.++++||+||+||+ +|++|
T Consensus       335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i  410 (504)
T PRK07514        335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV  410 (504)
T ss_pred             EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence            9977777666665   8999999999999999999999999988999999999999999999999999999996 89999


Q ss_pred             cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE  633 (698)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  633 (698)
                      +|.+||+++.++++|.+++|++.++   ++.+++++++.+..        ..+                 .+++++.++ 
T Consensus       411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------------~~~l~~~~~-  464 (504)
T PRK07514        411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA--------ALD-----------------EAAILAALK-  464 (504)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC--------CCC-----------------HHHHHHHHH-
Confidence            9999999999999999999999654   46788999887532        001                 244555554 


Q ss_pred             CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          634 GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       634 ~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      .+|+.+++|+.|++++++|      +|++||++|++|+++|++.
T Consensus       465 ~~l~~~~~p~~i~~v~~~p------~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        465 GRLARFKQPKRVFFVDELP------RNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             hhcccCCCCcEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence            6789999999999999999      9999999999999988754

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.9e-66  Score=586.64  Aligned_cols=503  Identities=18%  Similarity=0.247  Sum_probs=383.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++|+++|+.+....+...+..+.+||+||.++++++|++|.+. +++||+|+++++|+++|+++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l  110 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF  110 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence            457899999999999999999977511011113356799999999999999999986 9999999999999999999999


Q ss_pred             HHHhcCCeEEec-CCCCC--HHHHHHHHhhccceEEEecccchHHHHhhhhcCCce--eEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPL-YDTLG--PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl-~~~~~--~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|++++|+ ++.++  .+++.+++++++++++|++......+......++..  ..++.++....           
T Consensus       111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------  179 (612)
T PRK12476        111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD-----------  179 (612)
T ss_pred             HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-----------
Confidence            999999999999 57776  789999999999999999887666554443333321  23343332110           


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc-cCCCcEEEEcCChhhHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-FYPSDIYMSYLPLAHIY  310 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~  310 (698)
                                .. ..........++++++|+|||||||.||||++||+++.+.+......++ +.+++++++++|++|.+
T Consensus       180 ----------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~  248 (612)
T PRK12476        180 ----------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDM  248 (612)
T ss_pred             ----------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCccccc
Confidence                      00 0011112346789999999999999999999999999887766555566 78899999999999999


Q ss_pred             HHHHHHHHHHhCcEEEEeC-----CChhhHHHHHh--hhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          311 ERANQIVSVYYGVAVGFYQ-----GDNLKLMDDLA--VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       311 ~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      ++...+.+++.|++.++..     .++..+++.++  ++++|.++.+|.++..+.......  ..               
T Consensus       249 g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~--~~---------------  311 (612)
T PRK12476        249 GLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP--AE---------------  311 (612)
T ss_pred             chHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh--hh---------------
Confidence            9987666666666666554     27889999995  589999999999988776521000  00               


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh---CC---ceecccCcchhcchhcccCC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISAIDK  457 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~l~~~YG~TE~~~~~~~~~~  457 (698)
                                ...++           .+++| +++||+++++++.+.|.+.|   |+   .+++.||+||++..++...+
T Consensus       312 ----------~~~~~-----------l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~  369 (612)
T PRK12476        312 ----------GDDID-----------LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAP  369 (612)
T ss_pred             ----------hcCcc-----------hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCC
Confidence                      00000           14789 99999999999999998877   44   49999999998765443222


Q ss_pred             CC---------------------------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCC
Q 005406          458 GD---------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN  510 (698)
Q Consensus       458 ~~---------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~  510 (698)
                      ..                           ...+++|+|+++++++|+|.+++..++.++   .||||++|++++.|||++
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~  446 (612)
T PRK12476        370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRGYWGR  446 (612)
T ss_pred             CCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCcccccccCC
Confidence            11                           113579999999999999955467666555   899999999999999999


Q ss_pred             hhhhccccc------------------CCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHh-cCcCc
Q 005406          511 EVQTREVID------------------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA-KCKFV  571 (698)
Q Consensus       511 ~~~t~~~f~------------------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~-~~p~V  571 (698)
                      |+.|++.|.                  .++||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++. .||.|
T Consensus       447 ~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~V  524 (612)
T PRK12476        447 PEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPMV  524 (612)
T ss_pred             hHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhcccc
Confidence            999999884                  23599999999985 9999999999999997 899999999999997 58999


Q ss_pred             ee--EEEEEcCC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcce-eeEEE
Q 005406          572 LQ--CFIYGDSF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEY-AKAVT  646 (698)
Q Consensus       572 ~~--~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~-p~~i~  646 (698)
                      .+  ++|++.++  ++.++++|++.+....       .         +.    +.+.+.+++.+..    .|++ |+.+.
T Consensus       525 ~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~-------~---------~~----~~l~~~~~~~l~~----~~~~~p~~v~  580 (612)
T PRK12476        525 RRGYVTAFTVPAEDNERLVIVAERAAGTSR-------A---------DP----APAIDAIRAAVSR----RHGLAVADVR  580 (612)
T ss_pred             cCCcEEEEEecCCCcceEEEEEEecCCccc-------c---------cH----HHHHHHHHHHHHH----hhCCcceEEE
Confidence            99  66677543  5788888887653100       0         01    1223334433321    3555 67888


Q ss_pred             Eec--CCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          647 LMP--EPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       647 ~~~--~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      +++  ++|      +|++||++|++|++.|.+
T Consensus       581 ~v~~~~lP------~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        581 LVPAGAIP------RTTSGKLARRACRAQYLD  606 (612)
T ss_pred             EECCCCcC------cCCchHHHHHHHHHHHHc
Confidence            887  599      999999999999998753

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-65  Score=587.79  Aligned_cols=515  Identities=18%  Similarity=0.151  Sum_probs=391.9

Q ss_pred             HHHHHHHHHhCCCCCceEEEeecCCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           82 HDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        82 ~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      ..+|.++++++||++|+++.   +..  .++.+.+||+||.+++.++|++|+++|+++||+|+++++|++|+++++|||+
T Consensus       178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~  254 (728)
T PLN03052        178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII  254 (728)
T ss_pred             HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            34566666678999999886   321  1235789999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch------HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceE
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL------NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      ++|++++|+++.++.+++.+++++++++++|+++...      +....+.....  ..++++...........   ....
T Consensus       255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~---~~~~  329 (728)
T PLN03052        255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKL---REGD  329 (728)
T ss_pred             HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccccc---ccCC
Confidence            9999999999999999999999999999999986432      11111111111  12333322110000000   0012


Q ss_pred             eeHHHHHhcCCCC----CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhH
Q 005406          234 ISYLQLQSQGCSS----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI  309 (698)
Q Consensus       234 ~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (698)
                      .+|++++......    ..+.....++++++|+|||||||.||||+++|.+++..+......+++.++|++++++|++|+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~  409 (728)
T PLN03052        330 MSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWM  409 (728)
T ss_pred             ccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHH
Confidence            4677776543111    111122356899999999999999999999999987766555555788999999999999999


Q ss_pred             HHHHHHHHHHHhCcEEEEeCC--ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406          310 YERANQIVSVYYGVAVGFYQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI  387 (698)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~  387 (698)
                      ++....+.+|+.|++++++++  ++..+++.++++++|++.++|+++..+.+....                        
T Consensus       410 ~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~------------------------  465 (728)
T PLN03052        410 MGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM------------------------  465 (728)
T ss_pred             hHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc------------------------
Confidence            998778899999999999984  557799999999999999999999887652100                        


Q ss_pred             HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC-CceecccCcchhcchhcccCC-CCCCCCCc
Q 005406          388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDK-GDNLSGHV  465 (698)
Q Consensus       388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~-~~~~~~~v  465 (698)
                             .-+|           .++||.+++||++++++...++...++ .++++.||+||+++.+....+ .....+++
T Consensus       466 -------~~~d-----------lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~  527 (728)
T PLN03052        466 -------AGLD-----------WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAF  527 (728)
T ss_pred             -------ccCC-----------hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCcc
Confidence                   0001           148999999999999999888877665 579999999999765443322 22456889


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCC--ccccccCChhhhccccc------CCCceecCcEEEEecCCc
Q 005406          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPI--VFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGR  537 (698)
Q Consensus       466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~--~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~  537 (698)
                      |.|.+|++++|+| ++++.++.+.+ ..|||+++++.  ...+|+++. .+...|.      +++||+|||+|++|+||+
T Consensus       528 g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~  604 (728)
T PLN03052        528 STPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGY  604 (728)
T ss_pred             ccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence            9999999999999 56666655531 26999998753  345677764 3333331      234999999999999999


Q ss_pred             EEEEccCCCeEecCCceeecchHHHHHH-hcCcCceeEEEEEcCC---C-CeEEEEEEcC--hhHHHHHHHHcCCCcccH
Q 005406          538 LKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVLQCFIYGDSF---N-SCLVAIVAVD--PDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       538 l~i~GR~~d~ikls~G~~v~p~eIE~~l-~~~p~V~~~~V~g~~~---~-~~~va~vv~~--~~~~~~~~~~~~~~~~~~  610 (698)
                      ++|+||.||+||+ +|++|+|.|||+++ ..||.|.+++|+|.++   + +.++++|++.  ++.          .    
T Consensus       605 l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~----------~----  669 (728)
T PLN03052        605 YRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS----------N----  669 (728)
T ss_pred             EEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC----------C----
Confidence            9999999999997 89999999999999 5899999999999643   2 6799999986  311          0    


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAI  678 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i  678 (698)
                         .+.+    ++.+.+++.++ .+|+++.+|+.|++++++|      +|++||++|+.|++.+.+..
T Consensus       670 ---~~~~----~L~~~i~~~i~-~~l~~~~~p~~i~~v~~lP------~T~sGKi~Rr~Lr~~~~~~~  723 (728)
T PLN03052        670 ---PDLN----ELKKIFNSAIQ-KKLNPLFKVSAVVIVPSFP------RTASNKVMRRVLRQQLAQEL  723 (728)
T ss_pred             ---CCHH----HHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCchHHHHHHHHHHHHhhh
Confidence               0112    34455555554 6788999999999999999      99999999999999887654

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-65  Score=575.51  Aligned_cols=506  Identities=25%  Similarity=0.352  Sum_probs=417.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|.+.++++|+++|+.+.   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999764   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.++++.+++++++++.+....+.+..+.... ..+.......      .......+..+
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~  152 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDF  152 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhH
Confidence            9999999999999999999999999999999999998877666554433331 1111111100      00111233555


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-H
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (698)
                      +++....... ........+++++|+|||||||.||+|.+||+++.+.+......+++.++|++++.+|++|.+++.. .
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~  231 (523)
T PRK08316        153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL  231 (523)
T ss_pred             HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence            5555433221 1233457889999999999999999999999999988877777788999999999999999999876 4


Q ss_pred             HHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCc
Q 005406          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (698)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (698)
                      +.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+....                               
T Consensus       232 ~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------  280 (523)
T PRK08316        232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------------  280 (523)
T ss_pred             HHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------------------------------
Confidence            45788999999985 7999999999999999999999999877652100                               


Q ss_pred             hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC--CCCCCccCCCCC
Q 005406          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPNPA  471 (698)
Q Consensus       395 ~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~  471 (698)
                                 +.....++|.+++||++++.++.+.+++.+ ++++++.||+||++.+++.....+  ...+++|+|+++
T Consensus       281 -----------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  349 (523)
T PRK08316        281 -----------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLN  349 (523)
T ss_pred             -----------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCC
Confidence                       000114899999999999999999999887 789999999999988766544332  446789999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecC
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls  551 (698)
                      ++++|+| +++...+.+.   .|||+++|++++.||+++++.+++.| .+|||+|||+|++++||.++++||.||+||+ 
T Consensus       350 ~~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-  423 (523)
T PRK08316        350 VETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT-  423 (523)
T ss_pred             cEEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEe-
Confidence            9999999 5556566554   89999999999999999999999998 7899999999999999999999999999997 


Q ss_pred             CceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005406          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMN  628 (698)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  628 (698)
                      +|++|+|.+||+.+.++|+|.+++|++.++   ++.++++++++++.        ..+                 .+.+.
T Consensus       424 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~  478 (523)
T PRK08316        424 GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGA--------TVT-----------------EDELI  478 (523)
T ss_pred             CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCC--------CCC-----------------HHHHH
Confidence            899999999999999999999999998653   46788999887632        000                 23344


Q ss_pred             HHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          629 AVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       629 ~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                      +.++ .+|+.|++|..+++++++|      +|++||++|++|++.|++.++
T Consensus       479 ~~~~-~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        479 AHCR-ARLAGFKVPKRVIFVDELP------RNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HHHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHHhhcc
Confidence            4454 5789999999999999999      999999999999999988764

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-65  Score=578.75  Aligned_cols=506  Identities=23%  Similarity=0.357  Sum_probs=399.2

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..++.++|.++++++|+++|+...         .+.+||.||.++++++|++|.+. |+++||+|+++++|+++|+++++
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~---------~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL---------GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC---------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999998653         14699999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeC--CCCCCCC-----------
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVG--GKDEHLP-----------  223 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~-----------  223 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++......+....... ....++...  +......           
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKV  172 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhcccccccc
Confidence            99999999999999999999999999999999999876544443332221 111111110  0000000           


Q ss_pred             -C-CCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc--------
Q 005406          224 -S-LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--------  293 (698)
Q Consensus       224 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--------  293 (698)
                       . ..........+|+++...+...........++++++|+|||||||.||||+++|+++...+......+.        
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~  252 (562)
T PRK12492        173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP  252 (562)
T ss_pred             cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence             0 000000112456666554332222233456789999999999999999999999999776654433221        


Q ss_pred             -cCC-CcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhc
Q 005406          294 -FYP-SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS  368 (698)
Q Consensus       294 -~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  368 (698)
                       +.. .+++++.+|++|.+++.. .+..+..|+..++..  .++..+++.++++++|++.++|+++..+......     
T Consensus       253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----  327 (562)
T PRK12492        253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGF-----  327 (562)
T ss_pred             cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCc-----
Confidence             223 357899999999999876 455677888776654  5888999999999999999999999887652100     


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchh
Q 005406          369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET  448 (698)
Q Consensus       369 ~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~  448 (698)
                                                           ......++|.+++||+++++++.+.|.+.++++++++||+||+
T Consensus       328 -------------------------------------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  370 (562)
T PRK12492        328 -------------------------------------KDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTET  370 (562)
T ss_pred             -------------------------------------ccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCcccc
Confidence                                                 0001148999999999999999999998889999999999999


Q ss_pred             cchhcccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecC
Q 005406          449 SCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG  527 (698)
Q Consensus       449 ~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TG  527 (698)
                      +.+++...... ...+++|+|+++++++|+| +++..++.+.   .|||+++|+.++.|||++++.|.+.|+.+|||+||
T Consensus       371 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        371 SPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             CceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            87665543322 3457899999999999999 4566665554   89999999999999999999999999888999999


Q ss_pred             cEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcC
Q 005406          528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQG  604 (698)
Q Consensus       528 Dlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~  604 (698)
                      |+|+++++|.++|.||.||+||+ +|++|+|.+||+++.+||.|.+++|++.++   ++.+++++++.+..         
T Consensus       447 D~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------  516 (562)
T PRK12492        447 DIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG---------  516 (562)
T ss_pred             cEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC---------
Confidence            99999999999999999999997 799999999999999999999999998653   46788888865421         


Q ss_pred             CCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                      .+                 .++++++++ .+|+.|++|..+.+++++|      +|++||++|++|++.
T Consensus       517 ~~-----------------~~~i~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~GK~~r~~L~~~  561 (562)
T PRK12492        517 LS-----------------VEELKAYCK-ENFTGYKVPKHIVLRDSLP------MTPVGKILRRELRDI  561 (562)
T ss_pred             CC-----------------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCCCCceeHHHHHhh
Confidence            00                 345666664 6799999999999999999      999999999999864

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-65  Score=571.73  Aligned_cols=506  Identities=26%  Similarity=0.388  Sum_probs=427.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...+++++|.+.++.+|+++|+.+.   +.      .+||+||+++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999764   32      39999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++..+++.+++++++++.+....+.+....++.++.++..++....      ........+
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  148 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY  148 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence            99999999999999999999999999999999999998877777777777777777776654321      111233556


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (698)
                      .++...... ........++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+
T Consensus       149 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  227 (521)
T PRK06187        149 EELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY  227 (521)
T ss_pred             HHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence            666554322 1223345678999999999999999999999999998888777788999999999999999999998877


Q ss_pred             HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      .+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+.....                               
T Consensus       228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------------------------------  276 (521)
T PRK06187        228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------------------------------  276 (521)
T ss_pred             HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------------
Confidence            7999999999887 68999999999999999999999999887632110                               


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCC------CCCCccCCC
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN------LSGHVGSPN  469 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~  469 (698)
                                 .....++|.+++||+++++++.+.+.+.+++++++.||+||+++++........      ..+++|.|+
T Consensus       277 -----------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~  345 (521)
T PRK06187        277 -----------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL  345 (521)
T ss_pred             -----------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence                       001148999999999999999999999889999999999999876665544333      567899999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      ++++++|+| +++..++. .++..|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+||
T Consensus       346 ~~~~~~i~~-~~~~~~~~-~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~  422 (521)
T PRK06187        346 PGVEARIVD-DDGDELPP-DGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVII  422 (521)
T ss_pred             CCeEEEEEC-CCCCCCCC-CCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEE
Confidence            999999999 45555554 113489999999999999999999999988 578999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|.+|+|.+||+++.++++|.+++|++.++   ++.+++++++.+..        ..+                 .++
T Consensus       423 ~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~  476 (521)
T PRK06187        423 S-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGA--------TLD-----------------AKE  476 (521)
T ss_pred             c-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCC--------CCC-----------------HHH
Confidence            7 899999999999999999999999998543   46888998876532        000                 233


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      +.++++ ..|+.|++|..+++++++|      +|++||++|+++++.|++
T Consensus       477 l~~~l~-~~l~~~~~p~~i~~v~~~P------~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        477 LRAFLR-GRLAKFKLPKRIAFVDELP------RTSVGKILKRVLREQYAE  519 (521)
T ss_pred             HHHHHH-HhccCCCCceEEEEccCCC------CCCCCCeeHHHHHHHHhc
Confidence            444443 6789999999999999999      999999999999999875

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.5e-65  Score=571.16  Aligned_cols=497  Identities=22%  Similarity=0.297  Sum_probs=412.8

Q ss_pred             CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      +++++|...++++|+++|+.+.   +      +.+||+||.+++.++|++|++.|+++|++|+++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4789999999999999999763   2      369999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHH
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (698)
                      ++|++++|+++.++.+++..+++.++++++|++......+......++....++.+++.....     ........|+++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  146 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL  146 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence            999999999999999999999999999999998877666655555556666666665432111     112234566666


Q ss_pred             HhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHH
Q 005406          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV  319 (698)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l  319 (698)
                      ......  ........+++++|+|||||||.||||++||+++...+......+++..+|++++.+|++|.+++...+.++
T Consensus       147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l  224 (515)
T TIGR03098       147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF  224 (515)
T ss_pred             hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence            543322  122334568999999999999999999999999998888777777888999999999999999998888999


Q ss_pred             HhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406          320 YYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (698)
Q Consensus       320 ~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (698)
                      ..|+++++.+ .++..+++.++++++|++.++|+++..+.+...                                    
T Consensus       225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------------  268 (515)
T TIGR03098       225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------------------------------------  268 (515)
T ss_pred             HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc------------------------------------
Confidence            9999999887 689999999999999999999999988764100                                    


Q ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCC-CCCCCCCccCCCCCcEEEE
Q 005406          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK-GDNLSGHVGSPNPACEIKL  476 (698)
Q Consensus       399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i  476 (698)
                             ......++|.+++||+++++++.+.+++.+ ++.+++.||+||++........ .....+++|+|+++++++|
T Consensus       269 -------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  341 (515)
T TIGR03098       269 -------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV  341 (515)
T ss_pred             -------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence                   000115899999999999999999999988 7889999999998765443221 1345689999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC-----------CCceecCcEEEEecCCcEEEEccCC
Q 005406          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG-----------DGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       477 ~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~-----------~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      +| +++..++.++   .|||+++|+.++.|||++++.|.+.|..           ++||+|||+|+++++|++++.||.|
T Consensus       342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~  417 (515)
T TIGR03098       342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD  417 (515)
T ss_pred             EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence            99 5566665554   8999999999999999999999877643           3489999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      |+||+ +|++|+|.+||+++.++|.|.+++|++.++   ++.+++++++.+..        ..+                
T Consensus       418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~--------~~~----------------  472 (515)
T TIGR03098       418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGE--------ELD----------------  472 (515)
T ss_pred             cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCC--------CCC----------------
Confidence            99997 799999999999999999999999998543   56788888764421        011                


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                       .++++++++ .+|+.+++|..+++++++|      +|++||++|++|++
T Consensus       473 -~~~l~~~l~-~~l~~~~~p~~i~~v~~iP------~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 -RAALLAECR-ARLPNYMVPALIHVRQALP------RNANGKIDRKALAA  514 (515)
T ss_pred             -HHHHHHHHH-hhCccccCCCEEEEeccCC------CCCCCCCcHHHhcc
Confidence             345666664 6899999999999999999      99999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-65  Score=577.15  Aligned_cols=504  Identities=24%  Similarity=0.349  Sum_probs=409.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|++++|.+.++++|+++|+++.   +.    .+.+||+||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++|
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQ----ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CC----CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            357999999999999999999774   22    25699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhh-------------cCCceeEEEEeCCCC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFIS-------------EIPSVHLIVVVGGKD  219 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~-------------~~~~~~~ii~~~~~~  219 (698)
                      |+++|++++|+++.++.+++.+++++++++++|++....     ..+.+...             ..+.++.++..+...
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            999999999999999999999999999999999976432     11221111             123334444443221


Q ss_pred             CCCCCCCCCCCceEeeHHHHHhcCCCC-----CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccccc
Q 005406          220 EHLPSLPSTSGVKLISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF  294 (698)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  294 (698)
                      ..          ....|+++...+...     ........++++++++|||||||.||||.+||+++.+.+......+++
T Consensus       170 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~  239 (558)
T PRK12583        170 PP----------GFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL  239 (558)
T ss_pred             Cc----------cccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCC
Confidence            10          123344443322110     011123467899999999999999999999999999888877777888


Q ss_pred             CCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchH
Q 005406          295 YPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL  371 (698)
Q Consensus       295 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  371 (698)
                      .++|++++.+|++|.++... .+.++..|+++++..  .++..+++.++++++|++.++|+++..+.......       
T Consensus       240 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------  312 (558)
T PRK12583        240 TEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG-------  312 (558)
T ss_pred             CCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc-------
Confidence            99999999999999999877 567788999988754  68899999999999999999999987665421000       


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC-CceecccCcchhcc
Q 005406          372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSC  450 (698)
Q Consensus       372 ~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~  450 (698)
                                                         ....+++|.+++||+++++++.+++.+.++ ..+++.||+||++.
T Consensus       313 -----------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  357 (558)
T PRK12583        313 -----------------------------------NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSP  357 (558)
T ss_pred             -----------------------------------CCCchhheEEEecCCCCCHHHHHHHHHHcCCcceecccccccccc
Confidence                                               000148999999999999999999888776 57999999999998


Q ss_pred             hhcccCCC---CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecC
Q 005406          451 IISAIDKG---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG  527 (698)
Q Consensus       451 ~~~~~~~~---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TG  527 (698)
                      +++.....   ....+++|.|++++.++|+|++ +..++.++   .|||+++|+.++.||+++++.+...|+.+|||+||
T Consensus       358 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG  433 (558)
T PRK12583        358 VSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG  433 (558)
T ss_pred             ceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeecc
Confidence            76654322   2356789999999999999954 66666554   89999999999999999999999988889999999


Q ss_pred             cEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcC
Q 005406          528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQG  604 (698)
Q Consensus       528 Dlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~  604 (698)
                      |+|++++||++++.||.||+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.+++++++.++.        .
T Consensus       434 Dl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~  504 (558)
T PRK12583        434 DLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH--------A  504 (558)
T ss_pred             ceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC--------C
Confidence            99999999999999999999996 899999999999999999999999998543   46788998876531        0


Q ss_pred             CCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      .                 ..++|+++++ .+|+.|++|..+++++++|      +|++||++|++|++++.++
T Consensus       505 ~-----------------~~~~i~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        505 A-----------------SEEELREFCK-ARIAHFKVPRYFRFVDEFP------MTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             C-----------------CHHHHHHHHH-hhcccCcCCcEEEEeccCC------CCCCCCccHHHHHHHHHhh
Confidence            0                 1345666665 7899999999999999999      9999999999999987654

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5e-65  Score=575.42  Aligned_cols=505  Identities=25%  Similarity=0.359  Sum_probs=411.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|.+.++++|+++|+.+.   ++    .+.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|++++||
T Consensus        15 ~~~l~~~l~~~~~~~~~~~ai~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la   87 (559)
T PRK08315         15 EQTIGQLLDRTAARYPDREALVYR---DQ----GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA   87 (559)
T ss_pred             hccHHHHHHHHHHHCCCCeEEEEc---CC----CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence            458999999999999999999774   32    25699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhc-------------CCceeEEEEeCCCC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISE-------------IPSVHLIVVVGGKD  219 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~-------------~~~~~~ii~~~~~~  219 (698)
                      |+++|++++|+++.++.+++..+++.+++++++++....     ..+.+....             .+..+.++.++...
T Consensus        88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (559)
T PRK08315         88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK  167 (559)
T ss_pred             HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence            999999999999999999999999999999999986532     112111111             13334444443211


Q ss_pred             CCCCCCCCCCCceEeeHHHHHhcCCCC-----CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccccc
Q 005406          220 EHLPSLPSTSGVKLISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF  294 (698)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  294 (698)
                                ......+.++.......     ........++++++++|||||||.||||.+||+++...+......+++
T Consensus       168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~  237 (559)
T PRK08315        168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL  237 (559)
T ss_pred             ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC
Confidence                      11224555554432110     011223467889999999999999999999999999888877777889


Q ss_pred             CCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchH
Q 005406          295 YPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL  371 (698)
Q Consensus       295 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  371 (698)
                      .++|+++..+|++|.+++.. .+.++..|+++++..  .++..+++.++++++|+++++|+++..+.......       
T Consensus       238 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~-------  310 (559)
T PRK08315        238 TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFA-------  310 (559)
T ss_pred             CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccC-------
Confidence            99999999999999999876 667889999998654  68999999999999999999999997766421000       


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCc-eecccCcchhcc
Q 005406          372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSC  450 (698)
Q Consensus       372 ~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-l~~~YG~TE~~~  450 (698)
                                                         ....+++|.+++||+++++.+.+.+.+.++.. +++.||+||++.
T Consensus       311 -----------------------------------~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  355 (559)
T PRK08315        311 -----------------------------------RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP  355 (559)
T ss_pred             -----------------------------------CCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccc
Confidence                                               00114899999999999999999998888654 999999999987


Q ss_pred             hhcccCCCC---CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecC
Q 005406          451 IISAIDKGD---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG  527 (698)
Q Consensus       451 ~~~~~~~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TG  527 (698)
                      +++.....+   ....++|+|+++++++|+|.+++..++.++   .|||+|+|++++.|||++|+.+++.|..++||+||
T Consensus       356 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG  432 (559)
T PRK08315        356 VSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG  432 (559)
T ss_pred             ceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc
Confidence            665443322   346789999999999999966577666665   89999999999999999999999999889999999


Q ss_pred             cEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcC
Q 005406          528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQG  604 (698)
Q Consensus       528 Dlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~  604 (698)
                      |+|+++++|.++|+||.||+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.++++|++.++.        .
T Consensus       433 D~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~  503 (559)
T PRK08315        433 DLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA--------T  503 (559)
T ss_pred             ceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCC--------C
Confidence            99999999999999999999996 899999999999999999999999998654   35788888876531        0


Q ss_pred             CCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      .+                 .++++++++ ..|+.|++|..|++++++|      +|++||++|.+|++++...
T Consensus       504 ~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GK~~r~~L~~~~~~~  552 (559)
T PRK08315        504 LT-----------------EEDVRDFCR-GKIAHYKIPRYIRFVDEFP------MTVTGKIQKFKMREMMIEE  552 (559)
T ss_pred             CC-----------------HHHHHHHHH-hhcccccCCcEEEEcccCC------CCCCCceeHHHHHHHHHhh
Confidence            11                 334555554 6899999999999999999      9999999999999886653

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.3e-64  Score=568.09  Aligned_cols=497  Identities=20%  Similarity=0.260  Sum_probs=406.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..++.++|+++++  ||++|+++.   +      +.+||+||+++++++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            3579999988887  999999763   2      3599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      |+++|++++++.+..+..++..+++++++++++++....     ..........+..+.++..+...             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            999999888878778888999999999999999986431     11222223345555555543210             


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      ...+.+++..... ..+.....++++++++|||||||.||||++||+++...+......+++.++|++++.+|++|.+++
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~  238 (536)
T PRK10946        160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM  238 (536)
T ss_pred             CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence            1234444433221 122234567999999999999999999999999999998887777889999999999999999887


Q ss_pred             HH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      ..  .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.......                       
T Consensus       239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~-----------------------  295 (536)
T PRK10946        239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS-----------------------  295 (536)
T ss_pred             hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-----------------------
Confidence            64  577899999998876 7888999999999999999999999888764211000                       


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC-CCCCCCCccCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGHVGSP  468 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p  468 (698)
                                       ....+++|.+++||+++++.+.+.+.+.+|+++++.||+||++........ .....+++|+|
T Consensus       296 -----------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p  358 (536)
T PRK10946        296 -----------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP  358 (536)
T ss_pred             -----------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcc
Confidence                             000148999999999999999999998899999999999997644332221 12345789999


Q ss_pred             C-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCe
Q 005406          469 N-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (698)
Q Consensus       469 ~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~  547 (698)
                      + |+++++|+| ++++.++.++   .|||+++|+.++.|||++++.|.+.|+.+|||+|||+|++|++|+++++||.+|+
T Consensus       359 ~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~  434 (536)
T PRK10946        359 MSPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQ  434 (536)
T ss_pred             cCCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccce
Confidence            9 799999999 5556666554   8999999999999999999999999988999999999999999999999999999


Q ss_pred             EecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL  624 (698)
Q Consensus       548 ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  624 (698)
                      ||+ +|++|+|.+||++|.++|+|.+++|++.++   ++.+++++++.+..          +                 .
T Consensus       435 i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~----------~-----------------~  486 (536)
T PRK10946        435 INR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL----------K-----------------A  486 (536)
T ss_pred             eec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC----------C-----------------H
Confidence            996 899999999999999999999999998654   46788998876521          1                 3


Q ss_pred             HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      +++++++++..|+.|++|..+.+++++|      +|++||++|++|+++++..
T Consensus       487 ~~l~~~~~~~~l~~~~~P~~~~~~~~iP------~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        487 VQLRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             HHHHHHHHhCCccccccCcEEEEeccCC------CCCCCcccHHHHHHHHHhh
Confidence            4566666544699999999999999999      9999999999999987654

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-64  Score=569.63  Aligned_cols=509  Identities=19%  Similarity=0.260  Sum_probs=405.9

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .+...++.++|.+.++++|+++|+...         .+.+||+||.+++.++|++|.+.|+++|++|+++++|+++|+++
T Consensus         6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---------~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~   76 (540)
T PRK06164          6 APRADTLASLLDAHARARPDAVALIDE---------DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL   76 (540)
T ss_pred             ccCCCCHHHHHHHHHHhCCCCeEEecC---------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence            345668999999999999999999642         24599999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhh-cCCceeEEEEeCCCCCCCCCCCCC
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFIS-EIPSVHLIVVVGGKDEHLPSLPST  228 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~  228 (698)
                      ++||+++|++++|+++.++.+++.+++++++++++|++.+..     ..+..... ..+.++.++.++..........  
T Consensus        77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  154 (540)
T PRK06164         77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPA--  154 (540)
T ss_pred             HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCC--
Confidence            999999999999999999999999999999999999986642     11211111 1234555555542111111000  


Q ss_pred             CCceEeeHHHHHhcCCCCCC---CCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCC
Q 005406          229 SGVKLISYLQLQSQGCSSPQ---PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p  305 (698)
                          ...+.++.........   ......++++++++|||||||.||||+++|+++.+.+......+++.+++++++++|
T Consensus       155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p  230 (540)
T PRK06164        155 ----PGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALP  230 (540)
T ss_pred             ----cccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence                0011111110000000   012235689999999999999999999999999998888777788899999999999


Q ss_pred             hhhHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          306 LAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       306 l~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      ++|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+...    ..                
T Consensus       231 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~~----------------  290 (540)
T PRK06164        231 FCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----ER----------------  290 (540)
T ss_pred             chhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----cc----------------
Confidence            999999988889999999998887 789999999999999999999999998876300    00                


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecC-CCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC---C
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA-SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---N  460 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG-~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~  460 (698)
                                             ...++++.+..+| ++...++.+++... |+++++.||+||++++++......   .
T Consensus       291 -----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~  346 (540)
T PRK06164        291 -----------------------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSV  346 (540)
T ss_pred             -----------------------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcc
Confidence                                   0014778776665 56666777777664 899999999999987665543322   2


Q ss_pred             CCCCccCCC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEE
Q 005406          461 LSGHVGSPN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK  539 (698)
Q Consensus       461 ~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~  539 (698)
                      ....+|.|+ ++++++|+|++++..++.++   .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|++|.++
T Consensus       347 ~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~  423 (540)
T PRK06164        347 RIEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFV  423 (540)
T ss_pred             eeccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEE
Confidence            234578876 89999999977777666665   89999999999999999999999999889999999999999999999


Q ss_pred             EEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP  617 (698)
Q Consensus       540 i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (698)
                      +.||.||+||+ +|++|+|.+||+++.++|+|.+++|++.+.  +..+++++++.++.        ..+           
T Consensus       424 ~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~--------~~~-----------  483 (540)
T PRK06164        424 YQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGA--------SPD-----------  483 (540)
T ss_pred             EEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCC--------CCC-----------
Confidence            99999999997 899999999999999999999999998542  46789999986532        001           


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCccc---CCChHHHHHHHHHHH
Q 005406          618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTF---KIKRPQAKERFAKAI  678 (698)
Q Consensus       618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~G---Ki~R~~l~~~~~~~i  678 (698)
                            .+++.++++ .+|+.|++|+.|++++++|      +|++|   |++|++|++.+++..
T Consensus       484 ------~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        484 ------EAGLMAACR-EALAGFKVPARVQVVEAFP------VTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             ------HHHHHHHHH-hhcccCcCCcEEEEecCCC------CCCCCccccccHHHHHHHHHHhh
Confidence                  345555664 6799999999999999999      99999   999999999876543

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-64  Score=562.74  Aligned_cols=487  Identities=21%  Similarity=0.314  Sum_probs=398.7

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      +.++.++|++.++++|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357899999999999999999763   2      4599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++.+++.++++.+++++++++.+......     .  ....+.++....             ..+.
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~~~-------------~~~~  131 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----L--ETPKIVIDAAAQ-------------ADSR  131 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----c--ccceEEecCccc-------------chhH
Confidence            9999999999999999999999999999999999876533211     0  011222222110             0011


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QI  316 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~  316 (698)
                      .+.... ..........++++++++|||||||.||||++||+++...+......+++..+|+++..+|++|.+++.. .+
T Consensus       132 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  210 (497)
T PRK06145        132 RLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI  210 (497)
T ss_pred             HHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHH
Confidence            111110 1111122356789999999999999999999999999876665555678899999999999999998876 46


Q ss_pred             HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      .+++.|+++++.+ .++..+++.++++++|++.++|+++..+.......                               
T Consensus       211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-------------------------------  259 (497)
T PRK06145        211 AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-------------------------------  259 (497)
T ss_pred             HHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------------
Confidence            7889999998877 79999999999999999999999998886521000                               


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC--CCCCCCccCCCCCc
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPAC  472 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~  472 (698)
                                 ....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++.....  ....+++|.|++++
T Consensus       260 -----------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~  328 (497)
T PRK06145        260 -----------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV  328 (497)
T ss_pred             -----------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCc
Confidence                       00014799999999999999999998887 68899999999998765544322  23467899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCC
Q 005406          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~  552 (698)
                      +++++| +++...+.+.   .|||+++|++++.||+++++.|++.| .++||+|||+|+++++|+++++||.||+||+ +
T Consensus       329 ~~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~  402 (497)
T PRK06145        329 EIRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-G  402 (497)
T ss_pred             eEEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEe-C
Confidence            999999 4555555554   89999999999999999999999998 6899999999999999999999999999996 8


Q ss_pred             ceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      |++|+|.+||+++.++|+|.+++|++.++   ++.+++++++.+..        ..+                 .++|.+
T Consensus       403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~  457 (497)
T PRK06145        403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA--------TLT-----------------LEALDR  457 (497)
T ss_pred             CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence            99999999999999999999999998654   46789999886531        000                 345556


Q ss_pred             HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                      +++ .+|+.|++|..|++++++|      +|++||++|++|++++
T Consensus       458 ~~~-~~l~~~~~p~~i~~v~~iP------~t~~GKi~r~~l~~~~  495 (497)
T PRK06145        458 HCR-QRLASFKVPRQLKVRDELP------RNPSGKVLKRVLRDEL  495 (497)
T ss_pred             HHH-HhhhcCCCCCEEEEeccCC------CCCcccccHHHHHHHh
Confidence            664 6789999999999999999      9999999999999865

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-64  Score=567.06  Aligned_cols=509  Identities=21%  Similarity=0.264  Sum_probs=409.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+.+++++||++++...  .+   +..+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~l   82 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRS--VE---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWY   82 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEee--cc---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Confidence            3569999999999999999999743  12   235779999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|++++++.+++.++++.+++++++++.+....+.+.....+.++.++...+... ...   ........+
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~  158 (542)
T PRK06018         83 GIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MPQ---TTLKNAVAY  158 (542)
T ss_pred             HHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-ccc---cCccccccH
Confidence            9999999999999999999999999999999999998877777666666666666665543211 000   011123456


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHH-HH-HHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI-SN-VAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~-~~-~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      .+++..... ........++++++|+|||||||.||||++||++.+ +. .......+++..+|+++..+|++|.+++..
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~  237 (542)
T PRK06018        159 EEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGI  237 (542)
T ss_pred             HHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHH
Confidence            666544321 112233467889999999999999999999999743 22 223334577889999999999999999888


Q ss_pred             HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+.++..|+++++..  .++..+++.++++++|++.++|+++..+.+......                           
T Consensus       238 ~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------  290 (542)
T PRK06018        238 AFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG---------------------------  290 (542)
T ss_pred             HHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC---------------------------
Confidence            788899999998864  578899999999999999999999988875321100                           


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NL  461 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~  461 (698)
                                     ...+++|.+++||+++++++.++|++ +++++++.||+||++.+++......           ..
T Consensus       291 ---------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
T PRK06018        291 ---------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDV  354 (542)
T ss_pred             ---------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhc
Confidence                           00147999999999999999999999 8999999999999987655432111           12


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      ..++|+|.++++++|+| +++...+.+. +..|||+++|++++.|||++   +...++.+|||+|||+|+++++|++++.
T Consensus       355 ~~~~G~~~~g~~i~v~d-~~~~~~~~~~-~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~  429 (542)
T PRK06018        355 LQKQGYPPFGVEMKITD-DAGKELPWDG-KTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRIT  429 (542)
T ss_pred             cccCCCCCCCcEEEEEC-CCCCCCCCCC-CceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEE
Confidence            35789999999999999 4555444321 13799999999999999984   3445668999999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||.+|+||+ +|++|+|.+||+++.++|+|.+|+|++.++   ++.++++|++.++.        ..+            
T Consensus       430 GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~------------  488 (542)
T PRK06018        430 DRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGE--------TAT------------  488 (542)
T ss_pred             ecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCC--------CCC------------
Confidence            999999996 899999999999999999999999999654   46788888876532        011            


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                           .+++.++++ .+|+.|++|+.|.+++++|      +|++||++|++|++.|.+
T Consensus       489 -----~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        489 -----REEILKYMD-GKIAKWWMPDDVAFVDAIP------HTATGKILKTALREQFKD  534 (542)
T ss_pred             -----HHHHHHHHH-hhCccccCCcEEEEeccCC------CCCcchhhHHHHHHHHhc
Confidence                 245566664 6799999999999999999      999999999999988755

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-64  Score=564.44  Aligned_cols=497  Identities=25%  Similarity=0.338  Sum_probs=408.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|.++++++|+++|+.+.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l   80 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG   80 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3468999999999999999999763   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc-chHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ-TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      ||++.|++++|+++.++.+++.++++.++++.++++.. ....+.......+....++.++....            ...
T Consensus        81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  148 (524)
T PRK06188         81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD------------GVD  148 (524)
T ss_pred             HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc------------hhh
Confidence            99999999999999999999999999999999999876 33444443444455555555443210            001


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (698)
                      +.+....... ........++++++|+|||||||.||+|+++|.++...+......+++..+|++++.+|++|.+++. .
T Consensus       149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~  226 (524)
T PRK06188        149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F  226 (524)
T ss_pred             HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence            1111111101 1111223456799999999999999999999999999888887788899999999999999998875 5


Q ss_pred             HHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCc
Q 005406          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (698)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (698)
                      +.+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+.....                              
T Consensus       227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------------  276 (524)
T PRK06188        227 LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------------  276 (524)
T ss_pred             HHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc------------------------------
Confidence            67789999999987 68999999999999999999999998887631100                              


Q ss_pred             hhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC------CCCCCccCC
Q 005406          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD------NLSGHVGSP  468 (698)
Q Consensus       395 ~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~------~~~~~vG~p  468 (698)
                                  .....++|.+++||++++++....+.+.+++.+++.||+||++..++......      ...+++|+|
T Consensus       277 ------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p  344 (524)
T PRK06188        277 ------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRP  344 (524)
T ss_pred             ------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccc
Confidence                        00115899999999999999888888888999999999999976555443221      345789999


Q ss_pred             CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeE
Q 005406          469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (698)
Q Consensus       469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~i  548 (698)
                      +++++++|+| +++..++.+.   .|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.++|.||.+++|
T Consensus       345 ~~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i  419 (524)
T PRK06188        345 TPGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMI  419 (524)
T ss_pred             cCCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccce
Confidence            9999999999 4456555554   89999999999999999999999988 68999999999999999999999999999


Q ss_pred             ecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHH
Q 005406          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLA  625 (698)
Q Consensus       549 kls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  625 (698)
                      |+ +|++|+|.+||+++.++|+|.+++|++.++   ++.++++++++++..        .+                 .+
T Consensus       420 ~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~~-----------------~~  473 (524)
T PRK06188        420 VT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA--------VD-----------------AA  473 (524)
T ss_pred             ec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC--------CC-----------------HH
Confidence            96 899999999999999999999999998654   467889998875320        00                 34


Q ss_pred             HHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          626 EMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       626 ~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      +|+++++ ..++.+++|..|++++++|      +|++||++|++|++.|.+
T Consensus       474 ~l~~~~~-~~l~~~~~p~~i~~v~~~P------~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        474 ELQAHVK-ERKGSVHAPKQVDFVDSLP------LTALGKPDKKALRARYWE  517 (524)
T ss_pred             HHHHHHH-HhcccCCCCcEEEEecCCC------CCccccccHHHHHHHHHh
Confidence            4556664 6789999999999999999      999999999999998854

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=3.4e-64  Score=568.26  Aligned_cols=517  Identities=21%  Similarity=0.260  Sum_probs=400.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+++.|.+.+..+|+++|+.+.   .      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus        19 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la   89 (567)
T PLN02479         19 ALTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG   89 (567)
T ss_pred             ccCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            356899999999999999999653   1      3589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCC-------ceeEEEEeCCCCCCCCCCCCCCC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP-------SVHLIVVVGGKDEHLPSLPSTSG  230 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~ii~~~~~~~~~~~~~~~~~  230 (698)
                      |+++|++++|+++.++.+++.+++++++++++|++........+....+.       ....++.++..............
T Consensus        90 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (567)
T PLN02479         90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALG  169 (567)
T ss_pred             HHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccc
Confidence            99999999999999999999999999999999999876655444332211       11234444322111000000011


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHH
Q 005406          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY  310 (698)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  310 (698)
                      .....+.+++...............+++++++|||||||.||||++||+++..........+++..+|++++.+|++|.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~  249 (567)
T PLN02479        170 KGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN  249 (567)
T ss_pred             cCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence            12345677665432211111123345778899999999999999999999876655444556788899999999999999


Q ss_pred             HHHHHHH-HHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          311 ERANQIV-SVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       311 ~~~~~~~-~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      ++...+. .++.|.++++..+++..+++.++++++|++.++|+++..+.+.....                         
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  304 (567)
T PLN02479        250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE-------------------------  304 (567)
T ss_pred             hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc-------------------------
Confidence            9876543 56677777776689999999999999999999999999887631100                         


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--------C--
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--------D--  459 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--------~--  459 (698)
                           .           ....++++.+++||+++++.+.+.|.+. ++++++.||+||+++.++.....        .  
T Consensus       305 -----~-----------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~  367 (567)
T PLN02479        305 -----T-----------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQ  367 (567)
T ss_pred             -----c-----------cccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccc
Confidence                 0           0001478999999999999999998875 89999999999986544332100        0  


Q ss_pred             -CCCCCccCCCCCcE-EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCc
Q 005406          460 -NLSGHVGSPNPACE-IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR  537 (698)
Q Consensus       460 -~~~~~vG~p~~~~~-v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~  537 (698)
                       ....++|.+.++++ ++|+|.+++..++.+. ++.|||+++|++++.|||++|+.|++.| .+|||+|||+|++|++|+
T Consensus       368 ~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g-~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~  445 (567)
T PLN02479        368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADG-KTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGY  445 (567)
T ss_pred             cccccccCCCcCCcCceeEEcCCCCcccCCCC-CCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCcc
Confidence             11245788888876 8899865666554431 1379999999999999999999999999 689999999999999999


Q ss_pred             EEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhh
Q 005406          538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLC  614 (698)
Q Consensus       538 l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~  614 (698)
                      ++|+||.||+||+ +|++|+|.+||+++..||.|.+++|++.++   ++.+++++++.++...                 
T Consensus       446 l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------------  507 (567)
T PLN02479        446 IEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK-----------------  507 (567)
T ss_pred             EEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc-----------------
Confidence            9999999999996 899999999999999999999999999654   3578999988764200                 


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          615 NDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       615 ~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .+   .+...++|.++++ .+|+.|++|+.+++ .++|      +|++||++|++|++.+..
T Consensus       508 ~~---~~~~~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        508 SD---EAALAEDIMKFCR-ERLPAYWVPKSVVF-GPLP------KTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             cc---hhhhHHHHHHHHH-hhcccccCCceEEe-ccCC------CCCccCeeHHHHHHHHHh
Confidence            00   1223456777775 78999999999877 6799      999999999999877554

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.8e-65  Score=573.11  Aligned_cols=479  Identities=20%  Similarity=0.256  Sum_probs=361.8

Q ss_pred             HHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 005406           81 LHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSA  160 (698)
Q Consensus        81 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~  160 (698)
                      +.+.|+++++++|+++|+.+.   ++  +.++++||+||.++++++|++|.++  ++|++|+|+++|+++|++++|||++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~---~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~   76 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDR---ES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL   76 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCC---CC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence            788999999999999999764   22  3468899999999999999999988  7999999999999999999999999


Q ss_pred             cCCeEEecCCC--------CCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          161 YSYISVPLYDT--------LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       161 ~G~~~vpl~~~--------~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      +|++++ +++.        ...+++.+++++++++++|++......+......       +.+.+.              
T Consensus        77 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~--------------  134 (525)
T PRK05851         77 AGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHDL--------------  134 (525)
T ss_pred             cCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------cccccc--------------
Confidence            999865 4432        2235566789999999999987655443322110       000000              


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccC-CCcEEEEcCChhhHHH
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIYMSYLPLAHIYE  311 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~~  311 (698)
                          ........  ..+.....++++++|+|||||||.||||++||+++.+.+......+++. ++|++++++|++|+++
T Consensus       135 ----~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  208 (525)
T PRK05851        135 ----ATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG  208 (525)
T ss_pred             ----cccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc
Confidence                00000000  0011224679999999999999999999999999999888877778888 8999999999999999


Q ss_pred             HHHHHHHHHhCcEEEEeC---C--ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406          312 RANQIVSVYYGVAVGFYQ---G--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (698)
Q Consensus       312 ~~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (698)
                      +...+.+++.|+++++.+   +  ++..+++.++++++|++..+|.++..+... ....                     
T Consensus       209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~~---------------------  266 (525)
T PRK05851        209 LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARRV---------------------  266 (525)
T ss_pred             HHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hccc---------------------
Confidence            988888999999999876   2  677899999999999875544444333221 0000                     


Q ss_pred             HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH---hCC---ceecccCcchhcchhcccCCC--
Q 005406          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC---FGC---QVMEGYGMTETSCIISAIDKG--  458 (698)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~g~---~l~~~YG~TE~~~~~~~~~~~--  458 (698)
                                         .....+++|.+++||+++++++.++|.+.   +|+   .+++.||+||++..++...+.  
T Consensus       267 -------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~  327 (525)
T PRK05851        267 -------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG  327 (525)
T ss_pred             -------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence                               00001479999999999999999988764   454   499999999998665543221  


Q ss_pred             -------------CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCcee
Q 005406          459 -------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH  525 (698)
Q Consensus       459 -------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~  525 (698)
                                   ....+++|+|++|++++|+|.++...++.+   +.|||+++|++++.|||++|+.+     .+|||+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g---~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~  399 (525)
T PRK05851        328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGR---EIGEIEIRGASMMSGYLGQAPID-----PDDWFP  399 (525)
T ss_pred             ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCC---CeEEEEEecCchhhccccCCccC-----CCCcee
Confidence                         123468999999999999985543444444   48999999999999999998643     578999


Q ss_pred             cCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHH
Q 005406          526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAAS  602 (698)
Q Consensus       526 TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~  602 (698)
                      |||+|+++ +|.|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++   ++.+.++|+.....       
T Consensus       400 TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~-------  470 (525)
T PRK05851        400 TGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRG-------  470 (525)
T ss_pred             ccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecC-------
Confidence            99999997 8999999999999997 899999999999999999999999987542   34555665543210       


Q ss_pred             cCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          603 QGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                        .         ..+++.+.+.+.+..+     +  +++|+.+++++  ++|      +|++||++|++|++.++.
T Consensus       471 --~---------~~~~~~~~~~~~l~~~-----l--~~~P~~~~~v~~~~lP------~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        471 --P---------DEAGARSEVVQRVASE-----C--GVVPSDVVFVAPGSLP------RTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             --c---------chHHHHHHHHHHHHHH-----h--CCCccEEEEECCCCcC------cCcchHHHHHHHHHHHHh
Confidence              0         0112222333322221     2  27899999998  899      999999999999987754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-64  Score=618.33  Aligned_cols=505  Identities=24%  Similarity=0.287  Sum_probs=407.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      +...++.+.|++.++++|+++|+.+.   .+     +.+||+||+++++++|++|.+ ++++||+|+++++|++++++++
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~  682 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN  682 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence            45678999999999999999999642   12     359999999999999999987 4899999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhh--hcCCceeEEEEeCCCCCCCCCCCCCCCceE
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      +||+++|++++|+++.++.+++.++++++++++++++++....+.+..  ...+....++..++.....      .  ..
T Consensus       683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~  754 (1146)
T PRK08633        683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI------S--KV  754 (1146)
T ss_pred             HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc------c--hh
Confidence            999999999999999999999999999999999999877655543211  0122233344443321100      0  00


Q ss_pred             eeHHHHHhcCCCC-----CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhh
Q 005406          234 ISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH  308 (698)
Q Consensus       234 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h  308 (698)
                      ..+.+........     ........++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  834 (1146)
T PRK08633        755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH  834 (1146)
T ss_pred             HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence            1122221111000     00013456899999999999999999999999999998887777788899999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406          309 IYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (698)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (698)
                      .+++.. .+.+++.|+++++.+  .++..+++.++++++|++.++|++++.+.+....                      
T Consensus       835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------  892 (1146)
T PRK08633        835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL----------------------  892 (1146)
T ss_pred             HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------------
Confidence            999987 678899999998876  5889999999999999999999999887652100                      


Q ss_pred             HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-------
Q 005406          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-------  458 (698)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-------  458 (698)
                                          .+...+++|.+++||+++++++.+.+++.+|+++++.||+||++++++...+.       
T Consensus       893 --------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  952 (1146)
T PRK08633        893 --------------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK  952 (1146)
T ss_pred             --------------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence                                00011589999999999999999999998999999999999998766544321       


Q ss_pred             ---CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC---CCceecCcEEEE
Q 005406          459 ---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG---DGWLHTGDIGLW  532 (698)
Q Consensus       459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~---~gw~~TGDlg~~  532 (698)
                         ....+++|+|+|+++++|+|+++++.++.++   .|||+++|++++.||+++|+.|++.|.+   +|||+|||+|++
T Consensus       953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633        953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred             cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence               1246789999999999999977777766655   8999999999999999999999998832   399999999999


Q ss_pred             ecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCc--CceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCc
Q 005406          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK--FVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKF  607 (698)
Q Consensus       533 ~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p--~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~  607 (698)
                      |+||+++++||.||+||+ +|++|+|.|||+++.+||  .+.+++|++.++   ++.+++++++....            
T Consensus      1030 ~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~------------ 1096 (1146)
T PRK08633       1030 DEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAED------------ 1096 (1146)
T ss_pred             cCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccC------------
Confidence            999999999999999996 899999999999999999  466789988654   46788888863210            


Q ss_pred             ccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          608 EDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                                      .+++++.+++..++.|++|..+++++++|      +|++||++|++|++..++.
T Consensus      1097 ----------------~~~l~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1097 ----------------VEELKRAIKESGLPNLWKPSRYFKVEALP------LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             ----------------HHHHHHHHHhcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence                            23444444446799999999999999999      9999999999999876543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.3e-64  Score=565.64  Aligned_cols=507  Identities=25%  Similarity=0.359  Sum_probs=402.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...++.++|...++++|+++|+.+.   +      +.+||.||+++++++|.+|.+.|+++|++|+++++|+++++++++
T Consensus        21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l   91 (557)
T PRK07059         21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA   91 (557)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            3568999999999999999999764   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCC-CCCCC----------
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HLPSL----------  225 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~~----------  225 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++......+...... ...+.++....... .....          
T Consensus        92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (557)
T PRK07059         92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK-TAVKHVVVASMGDLLGFKGHIVNFVVRRVK  170 (557)
T ss_pred             HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc-cCCceeEEeccccccccccccccccccccc
Confidence            9999999999999999999999999999999999987665554443332 22333333221100 00000          


Q ss_pred             ---CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc----ccc---C
Q 005406          226 ---PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM----VQF---Y  295 (698)
Q Consensus       226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~---~  295 (698)
                         ........+.+++++..+...........++++++|+|||||||.||||+++|++++..+......    +..   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~  250 (557)
T PRK07059        171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP  250 (557)
T ss_pred             ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence               000001224556665544332233344678999999999999999999999999998765432221    111   1


Q ss_pred             CCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHH
Q 005406          296 PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR  372 (698)
Q Consensus       296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  372 (698)
                      ..+.+++.+|++|.+++.. .+.++..|++.++.+  .++..+++.++++++|.+.++|.++..+......         
T Consensus       251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~---------  321 (557)
T PRK07059        251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDF---------  321 (557)
T ss_pred             CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCc---------
Confidence            2457888999999998765 567788888877765  4788999999999999999999999888652100         


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchh
Q 005406          373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII  452 (698)
Q Consensus       373 ~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~  452 (698)
                                                       ......++|.++.||+++++.+.+.|.+.+++++++.||+||++.++
T Consensus       322 ---------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  368 (557)
T PRK07059        322 ---------------------------------DKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA  368 (557)
T ss_pred             ---------------------------------CcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence                                             00001478999999999999999999988999999999999998876


Q ss_pred             cccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEE
Q 005406          453 SAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL  531 (698)
Q Consensus       453 ~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~  531 (698)
                      +...... ...+++|.|+++++++|+| +++..++.+.   .|||+++|++++.|||++++.|.+.|..+|||+|||+|+
T Consensus       369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~  444 (557)
T PRK07059        369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV  444 (557)
T ss_pred             hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence            6543322 3457899999999999998 4556665554   899999999999999999999999998899999999999


Q ss_pred             EecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcc
Q 005406          532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFE  608 (698)
Q Consensus       532 ~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~  608 (698)
                      ++++|.++++||++|+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.++++|+.....         .+  
T Consensus       445 ~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~~--  512 (557)
T PRK07059        445 MDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA---------LT--  512 (557)
T ss_pred             EcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC---------CC--
Confidence            9999999999999999997 799999999999999999999999998543   46788888865421         11  


Q ss_pred             cHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          609 DLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                                     .++++++++ ..|+.+++|..|.+++++|      +|++||++|+.|+++
T Consensus       513 ---------------~~~l~~~~~-~~l~~~~~P~~i~~v~~~P------~t~~GK~~r~~L~~~  555 (557)
T PRK07059        513 ---------------EEDVKAFCK-ERLTNYKRPKFVEFRTELP------KTNVGKILRRELRDG  555 (557)
T ss_pred             ---------------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCcccceeHHHHHhh
Confidence                           244555554 6799999999999999999      999999999999754

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-64  Score=559.73  Aligned_cols=491  Identities=19%  Similarity=0.256  Sum_probs=390.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...++.++|.+.+.  ++++++.+.    +     +++||.||+++++++|++|+++ |++++++|+++++|+++|++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999988775  788888653    2     4699999999999999999997 8999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      +||+++|++++|+++.++.+++.+++++++++++|++......+....   +... ++..+.                ..
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~----------------~~  131 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS----------------PA  131 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----------------cc
Confidence            999999999999999999999999999999999999987655443321   2222 222211                12


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (698)
                      +.+++..............++++++|+|||||||.||||++||+++..........+++..+|++++.+|++|.+++.. 
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~  211 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG  211 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence            3443332211112233457899999999999999999999999999888887777788899999999999999999877 


Q ss_pred             HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+.++..|+++++.+ .++..+++.++++++|++.++|+.+..+......                              
T Consensus       212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------------  261 (529)
T PRK07867        212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------------  261 (529)
T ss_pred             HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------------
Confidence            456788999998876 6899999999999999999999998776542100                              


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcE
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACE  473 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  473 (698)
                      ..            ....++|. ++||+++++.. ..+.+.+|+++++.||+||+++.++..  .....+++|.|+++  
T Consensus       262 ~~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~--~~~~~~~~g~~~~~--  323 (529)
T PRK07867        262 PD------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRT--PDTPPGALGPLPPG--  323 (529)
T ss_pred             cc------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccC--CCCCCCCcCCCCCC--
Confidence            00            00136774 56888888775 556666899999999999998655432  22345789999999  


Q ss_pred             EEEEecCCCCCCCCCC---------CCCccEEEE-eCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          474 IKLVDVPEMNYTSEDQ---------PHPRGEICV-RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~---------~~~~GEl~v-~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++++|.+++..++.+.         .+..|||++ +|++++.||+++++.+.+.| .+|||+|||+|+++++|.++|+||
T Consensus       324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR  402 (529)
T PRK07867        324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR  402 (529)
T ss_pred             EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence            6778855554443332         011799999 99999999999999999998 689999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++   ++.+++++++.++.        ..+              
T Consensus       403 ~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~--------~~~--------------  459 (529)
T PRK07867        403 LGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGA--------KFD--------------  459 (529)
T ss_pred             ccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCC--------CCC--------------
Confidence            9999997 899999999999999999999999999654   46788888876532        011              


Q ss_pred             HHHHHHHHHHHHh-CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKE-GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       621 ~~i~~~l~~~~~~-~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                         .+++++++++ ..|+.|++|..|++++++|      +|++||++|++|+++....-+
T Consensus       460 ---~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKv~r~~L~~~~~~~~~  510 (529)
T PRK07867        460 ---PDAFAEFLAAQPDLGPKQWPSYVRVCAELP------RTATFKVLKRQLSAEGVDCAD  510 (529)
T ss_pred             ---HHHHHHHHHhhccCCcccCCeEEEEeeccC------CCCCcceeHHHHHHhcCCCCC
Confidence               2334444432 3699999999999999999      999999999999987654433

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.9e-65  Score=678.90  Aligned_cols=527  Identities=19%  Similarity=0.224  Sum_probs=432.2

Q ss_pred             hHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHH
Q 005406            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (698)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (698)
                      ..|+++|.++|.++.++|..+++++++.......     +   +.      .|+    .         .+..+...++++
T Consensus      1083 ~~l~~~~~~~l~~~~~~p~~~~~~l~l~~~~~~~-----~---l~------~~~----~---------~~~~~~~~~l~~ 1135 (4334)
T PRK05691       1083 ERLAEHFLALLEQVCEDPQRALGDVQLLDAAERA-----Q---LA------QWG----Q---------APCAPAQAWLPE 1135 (4334)
T ss_pred             HHHHHHHHHHHHHHHhCcccchhhhcCCCHHHHH-----H---HH------hcc----C---------CCCCCccCCHHH
Confidence            4688999999999999999999999987644210     0   00      000    0         001123467999


Q ss_pred             HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        84 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      +|+++++++||++|+.+.   +      +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+
T Consensus      1136 ~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~ 1206 (4334)
T PRK05691       1136 LLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGG 1206 (4334)
T ss_pred             HHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            999999999999999764   3      3499999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcC
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (698)
                      ++||++|.++.+++.++++++++++++++......+..    ..... .+.++...                     ...
T Consensus      1207 ~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~~-~~~~~~~~---------------------~~~ 1260 (4334)
T PRK05691       1207 AYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGVS-AIALDSLH---------------------LDS 1260 (4334)
T ss_pred             EEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCce-EEeecccc---------------------ccc
Confidence            99999999999999999999999999998765433211    11111 11111100                     000


Q ss_pred             CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCc
Q 005406          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (698)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (698)
                      .....+.....+++++||+|||||||.||||+++|+++.+.+.+....+++.++|+++++.|++|+.++..++.+++.|+
T Consensus      1261 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~ 1340 (4334)
T PRK05691       1261 WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGC 1340 (4334)
T ss_pred             cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCC
Confidence            00111222346899999999999999999999999999999988888889999999999999999999998999999999


Q ss_pred             EEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       324 ~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      ++++.+    .++..+++.++++++|++.++|+++..+.+....                                    
T Consensus      1341 ~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------------------ 1384 (4334)
T PRK05691       1341 RLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA------------------------------------ 1384 (4334)
T ss_pred             EEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc------------------------------------
Confidence            999975    5888999999999999999999999887642100                                    


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccC--CCCCCCCCccCCCCCcEEEE
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKL  476 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i  476 (698)
                              ...+++|.+++||+++++++.+.|...+ ++.++|.||+||+++.++...  ..+...+++|+|+++++++|
T Consensus      1385 --------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 1456 (4334)
T PRK05691       1385 --------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRV 1456 (4334)
T ss_pred             --------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEE
Confidence                    0015899999999999999999998876 689999999999987665432  22345678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc-------CCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       477 ~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      +| ++++.++.|.   .|||+|+|+++++||+++|+.|+++|.       +.+||+|||+|++++||.++|+||+|++||
T Consensus      1457 ~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qik 1532 (4334)
T PRK05691       1457 LD-AELNLLPPGV---AGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVK 1532 (4334)
T ss_pred             EC-CCCCCCCCCC---ceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEE
Confidence            99 5566666665   899999999999999999999999983       235999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcC--CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEM  627 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  627 (698)
                      + +|++|+|.|||++|.+||+|.+|+|++..  .+..++|++++..+.        ..                 ..++|
T Consensus      1533 i-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~--------~~-----------------~~~~l 1586 (4334)
T PRK05691       1533 L-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQ--------EA-----------------EAERL 1586 (4334)
T ss_pred             E-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCC--------CC-----------------CHHHH
Confidence            8 89999999999999999999999998743  357899999876532        00                 02356


Q ss_pred             HHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          628 NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       628 ~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                      +++++ .+||.|++|..|+.++++|      +|++||++|++|.+.
T Consensus      1587 ~~~l~-~~Lp~y~vP~~~~~~~~lP------~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1587 KAALA-AELPEYMVPAQLIRLDQMP------LGPSGKLDRRALPEP 1625 (4334)
T ss_pred             HHHHH-HhCccccCCcEEEEccccC------CCCCCCcChhhcCcc
Confidence            66665 7899999999999999999      999999999999653

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-64  Score=560.03  Aligned_cols=473  Identities=21%  Similarity=0.282  Sum_probs=383.4

Q ss_pred             HHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005406           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (698)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (698)
                      +.+++.+||++|+.+.   ..    .+.+||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~---~~----~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---AL----GRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            3567889999998652   11    1469999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCC
Q 005406          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (698)
Q Consensus       166 vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (698)
                      +|+++.++.+++.+++++++++++|++.......      .                         ....++++......
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~  123 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------T-------------------------DVEDLAAFIASADA  123 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------c-------------------------cccchhhhhhhccc
Confidence            9999999999999999999999999976432110      0                         00111222111100


Q ss_pred             -CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHhCc
Q 005406          246 -SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGV  323 (698)
Q Consensus       246 -~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~  323 (698)
                       .........++++++++|||||||.||+|++||+++...+........+..+|++++.+|++|.+++.. .+.++..|+
T Consensus       124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~  203 (488)
T PRK09088        124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG  203 (488)
T ss_pred             cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence             011122345688999999999999999999999999887776666667788999999999999999887 556788899


Q ss_pred             EEEEeC-CChhhHHHHHh--hhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHH
Q 005406          324 AVGFYQ-GDNLKLMDDLA--VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (698)
Q Consensus       324 ~~~~~~-~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (698)
                      ++++.+ .++..++..+.  ++++|+++++|+++..+.+....                                  +  
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------~--  247 (488)
T PRK09088        204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGF----------------------------------D--  247 (488)
T ss_pred             EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCc----------------------------------C--
Confidence            998876 67888888775  48999999999999877642100                                  0  


Q ss_pred             HHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC---CCCCCCCccCCCCCcEEEEE
Q 005406          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK---GDNLSGHVGSPNPACEIKLV  477 (698)
Q Consensus       401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~i~  477 (698)
                            ....+++|.+++||++++....+.+... |+++++.||+||++++......   .....+++|.|.++++++|+
T Consensus       248 ------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~  320 (488)
T PRK09088        248 ------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV  320 (488)
T ss_pred             ------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence                  0001489999999999999988877764 8999999999999875432211   12356889999999999999


Q ss_pred             ecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeec
Q 005406          478 DVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVA  557 (698)
Q Consensus       478 d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~  557 (698)
                      | +++..++.+.   .|||+++|++++.||+++++.|++.|+.+|||+|||+|++|++|.++|.||.||+||. +|++|+
T Consensus       321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~  395 (488)
T PRK09088        321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVY  395 (488)
T ss_pred             C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-CCEEEC
Confidence            8 4555555554   8999999999999999999999999988999999999999999999999999999996 899999


Q ss_pred             chHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhC
Q 005406          558 PEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEG  634 (698)
Q Consensus       558 p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  634 (698)
                      |.+||++|.++|.|.+++|++.++   ++..+++|+++++.        ..                 ..+++.+.++ .
T Consensus       396 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~-----------------~~~~l~~~~~-~  449 (488)
T PRK09088        396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA--------PL-----------------DLERIRSHLS-T  449 (488)
T ss_pred             HHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC--------CC-----------------CHHHHHHHHH-h
Confidence            999999999999999999999654   46778888876532        00                 0244555554 6


Q ss_pred             CCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          635 QLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       635 ~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .++.|++|+.|++++++|      +|++||++|++|++++.+
T Consensus       450 ~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        450 RLAKYKVPKHLRLVDALP------RTASGKLQKARLRDALAA  485 (488)
T ss_pred             hCcCCCCCCEEEEcccCC------CCCCCceeHHHHHHHHHh
Confidence            789999999999999999      999999999999998865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=7.7e-64  Score=558.86  Aligned_cols=496  Identities=23%  Similarity=0.314  Sum_probs=410.1

Q ss_pred             CCHHHHHHHH-HHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           79 GTLHDNFIYA-VENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        79 ~tl~~~l~~~-a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      .+..+++.++ ++.+||++|+...         .+.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++|
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~~---------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a   74 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFIDD---------ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG   74 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEeC---------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            4567777776 6679999998653         24599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++.+++.++++.+++++++++......+.+....++..+.++..+....           ....+.
T Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  143 (508)
T TIGR02262        75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQLA  143 (508)
T ss_pred             HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-----------ccccHH
Confidence            999999999999999999999999999999999998877776666666677776666543210           112344


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHh-cccccccCCCcEEEEcCChhhHHHHHH-H
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG-FSLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (698)
                      ++...... ........++++++|+|||||||.||||++||+++...+.. ....+++.++|++++.+|++|.+++.. .
T Consensus       144 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~  222 (508)
T TIGR02262       144 ELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNAL  222 (508)
T ss_pred             HHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHH
Confidence            44432221 12223456789999999999999999999999999887765 344568889999999999999999876 5


Q ss_pred             HHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      +.++..|+++++.+  .++..+++.|++++||++.++|.++..+.+...                               
T Consensus       223 ~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~-------------------------------  271 (508)
T TIGR02262       223 TFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN-------------------------------  271 (508)
T ss_pred             HHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc-------------------------------
Confidence            56788999998876  578999999999999999999998876654200                               


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcE
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACE  473 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  473 (698)
                                 .+...+.++|.+++||+++++++.+.|.+.+|+++++.||+||++.+++.....+...+++|.|+++++
T Consensus       272 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~  340 (508)
T TIGR02262       272 -----------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYR  340 (508)
T ss_pred             -----------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcE
Confidence                       000112589999999999999999999998999999999999998765554444455678999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCc
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG  553 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G  553 (698)
                      ++|+| +++..++.+.   .|||+++|++++.||+++++.+++.| .+|||+|||+++++++|.+++.||.||+||+ +|
T Consensus       341 v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~G  414 (508)
T TIGR02262       341 LRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-SG  414 (508)
T ss_pred             EEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeee-CC
Confidence            99999 6666666655   89999999999999999999999988 6899999999999999999999999999997 79


Q ss_pred             eeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406          554 EYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV  630 (698)
Q Consensus       554 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  630 (698)
                      ++|+|.+||+.+.++|+|.++++++..+   .+.+.+++++.+...        .              .+...++|++.
T Consensus       415 ~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~--------------~~~~~~~i~~~  472 (508)
T TIGR02262       415 IYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD--------I--------------DTALETELKEH  472 (508)
T ss_pred             EEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc--------c--------------ccccHHHHHHH
Confidence            9999999999999999999999998543   356788888765320        0              01224556666


Q ss_pred             HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      ++ .+|+.|++|..+++++++|      +|++||++|++|++
T Consensus       473 ~~-~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~  507 (508)
T TIGR02262       473 VK-DRLAPYKYPRWIVFVDDLP------KTATGKIQRFKLRE  507 (508)
T ss_pred             HH-HhcccCCCCceEEEecCCC------CCCCCcEehhhccC
Confidence            65 6799999999999999999      99999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-64  Score=561.91  Aligned_cols=484  Identities=21%  Similarity=0.253  Sum_probs=381.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCHhHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGL-QKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      .|+.++|..++  .|+++|+.+.   +      ..+||.||.++++++|.+|.+.|+ ++|++|+++++|+++|+++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            46888887654  7999999653   2      359999999999999999999999 7999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|++|.++.+++.+++++++++++|++.+....+.+..  .+..+.+ .++..                .+.
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~~----------------~~~  132 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDTP----------------AYA  132 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccch----------------hhh
Confidence            9999999999999999999999999999999999877655443321  2333332 22210                122


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH-
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI-  316 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~-  316 (698)
                      +++..... ..+.....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++...+ 
T Consensus       133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  211 (540)
T PRK13388        133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA  211 (540)
T ss_pred             hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence            33221111 1122235679999999999999999999999999998887777778899999999999999999987744 


Q ss_pred             HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      .++..|+++++.+ .++..+++.++++++|++..+|..+..+......                             . .
T Consensus       212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~-----------------------------~-~  261 (540)
T PRK13388        212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER-----------------------------P-D  261 (540)
T ss_pred             HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC-----------------------------c-c
Confidence            5788999998876 6899999999999999999999988776542000                             0 0


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEE
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK  475 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~  475 (698)
                                  ....+++.+ + |++++++..+.|.+.+++++++.||+||++.+++..  .....+++|+|++++++ 
T Consensus       262 ------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i-  324 (540)
T PRK13388        262 ------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI-  324 (540)
T ss_pred             ------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence                        000356643 3 556778888888888899999999999998765532  23456789999999764 


Q ss_pred             EEecCCCCCCC------CC----CCCCccEEEEe-CCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC
Q 005406          476 LVDVPEMNYTS------ED----QPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK  544 (698)
Q Consensus       476 i~d~~~~~~~~------~~----~~~~~GEl~v~-g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~  544 (698)
                       ++.+....++      .+    .++..|||+++ |++++.||+++|+.|++.| .+|||+|||+|++|++|.++++||+
T Consensus       325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~  402 (540)
T PRK13388        325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRT  402 (540)
T ss_pred             -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccC
Confidence             3322211111      01    12248999998 9999999999999999998 6899999999999999999999999


Q ss_pred             CCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005406          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARA  621 (698)
Q Consensus       545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (698)
                      ||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++   ++.+++++++.++.        ..+               
T Consensus       403 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~--------~~~---------------  458 (540)
T PRK13388        403 ADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA--------TFD---------------  458 (540)
T ss_pred             CceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCC--------cCC---------------
Confidence            999997 899999999999999999999999999654   45677777776532        011               


Q ss_pred             HHHHHHHHHHHh-CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          622 AVLAEMNAVGKE-GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       622 ~i~~~l~~~~~~-~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                        .++++++++. ..|+.|++|..+++++++|      +|++||++|++|++..
T Consensus       459 --~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP------~t~~GKv~R~~L~~~~  504 (540)
T PRK13388        459 --PDAFAAFLAAQPDLGTKAWPRYVRIAADLP------STATNKVLKRELIAQG  504 (540)
T ss_pred             --HHHHHHHHHhhccCCcccCCcEEEEeccCC------CCCcceeeHHhHHHhc
Confidence              2334444432 3699999999999999999      9999999999998864

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.9e-64  Score=569.41  Aligned_cols=501  Identities=23%  Similarity=0.301  Sum_probs=390.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|.+.++++|+++|+.+.   +      +.+||+||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l  105 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL  105 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999764   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....+.+..........++..++....          ....+
T Consensus       106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~  175 (600)
T PRK08279        106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY  175 (600)
T ss_pred             HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence            99999999999999999999999999999999999988776665554444333333333221100          01234


Q ss_pred             HHHHhcCCCC----CCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          237 LQLQSQGCSS----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       237 ~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      .++.......    +.......++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~  255 (600)
T PRK08279        176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG  255 (600)
T ss_pred             HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence            4443322111    111233467899999999999999999999999999999888777899999999999999999999


Q ss_pred             HHHH-HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          313 ANQI-VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       313 ~~~~-~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      ...+ .++..|+++++.+ +++..+++.++++++|++.++|+++..+.......                          
T Consensus       256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~--------------------------  309 (600)
T PRK08279        256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP--------------------------  309 (600)
T ss_pred             HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--------------------------
Confidence            8754 5677888888876 78999999999999999999999988776521000                          


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCCCCCCCccCCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPN  469 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  469 (698)
                         .             ....++|.+  +|+++++++.+.|...++. .+++.||+||++..++..   ....+++|.+.
T Consensus       310 ---~-------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~  368 (600)
T PRK08279        310 ---T-------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVP  368 (600)
T ss_pred             ---c-------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCccccccc
Confidence               0             001367654  4778999999999988876 599999999987643321   23456788766


Q ss_pred             C----CcEEEEEecCCCC-------CCCCCCCCCccEEE--EeCCCccccccCChhhhcccc------cCCCceecCcEE
Q 005406          470 P----ACEIKLVDVPEMN-------YTSEDQPHPRGEIC--VRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIG  530 (698)
Q Consensus       470 ~----~~~v~i~d~~~~~-------~~~~~~~~~~GEl~--v~g~~~~~GY~~~~~~t~~~f------~~~gw~~TGDlg  530 (698)
                      +    +..+...+.+.+.       ......+++.|||+  ++|++++.|| ++++.|.+.|      +.++||+|||+|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg  447 (600)
T PRK08279        369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLM  447 (600)
T ss_pred             ccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceE
Confidence            6    3333322211111       11122334589998  7899999999 9999888776      246899999999


Q ss_pred             EEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC----CCeEEEEEEcChhHHHHHHHHcCCC
Q 005406          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF----NSCLVAIVAVDPDVLKDWAASQGIK  606 (698)
Q Consensus       531 ~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~~~~  606 (698)
                      ++|+||.+++.||.||+||+ +|++|+|.|||+++.+||+|.+|+|+|.+.    +...+++++..++.        ..+
T Consensus       448 ~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~--------~~~  518 (600)
T PRK08279        448 RDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGA--------EFD  518 (600)
T ss_pred             EEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCc--------cCC
Confidence            99999999999999999997 899999999999999999999999998542    33445555544211        011


Q ss_pred             cccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          607 FEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                                       .++++++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.+.
T Consensus       519 -----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        519 -----------------LAALAAHLY-ERLPAYAVPLFVRLVPELE------TTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             -----------------HHHHHHHHH-hhCccccCCeEEEeecCCC------CCcchhhhHHHHhhcCCCc
Confidence                             356666775 6799999999999999999      9999999999999877554

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4.5e-64  Score=549.09  Aligned_cols=424  Identities=20%  Similarity=0.196  Sum_probs=350.6

Q ss_pred             EeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEec
Q 005406          114 MTYGEVSAARKEIGSGLLFHGL-QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI  192 (698)
Q Consensus       114 ~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~  192 (698)
                      +.|+||.+++.++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999998 579999999999999999999999999999999999999999999999999999987


Q ss_pred             ccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcc
Q 005406          193 PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK  272 (698)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  272 (698)
                      .+.....               ....                          .  .......++++++++|||||||.||
T Consensus       100 ~~~~~~~---------------~~~~--------------------------~--~~~~~~~~~~~~~i~~TSGTTG~PK  136 (452)
T PRK07445        100 DQLKLSH---------------PPPL--------------------------P--SQGILPNLETGWIMIPTGGSSGQIR  136 (452)
T ss_pred             Ccccccc---------------CCCC--------------------------C--ccccCCCCCCcEEEEeCCCCCCCCc
Confidence            6432100               0000                          0  0001235689999999999999999


Q ss_pred             eeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC-ChhhHHHHHhhhcCcEEeech
Q 005406          273 GAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVP  351 (698)
Q Consensus       273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~-~~~~l~~~i~~~~~t~~~~~P  351 (698)
                      ||++||+++.+.+......+++.+ ++.++++|++|.+|+...+.+++.|+++++.+. ...........+++|+++++|
T Consensus       137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP  215 (452)
T PRK07445        137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP  215 (452)
T ss_pred             EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence            999999999888877666666654 467889999999999888889999999998762 223223334578899999999


Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHH
Q 005406          352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL  431 (698)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~  431 (698)
                      +++..+.+....                                             ..+++|.+++||+++++++.+.+
T Consensus       216 ~~l~~l~~~~~~---------------------------------------------~l~~l~~i~~gG~~l~~~~~~~~  250 (452)
T PRK07445        216 TQLQRLLQLRPQ---------------------------------------------WLAQFRTILLGGAPAWPSLLEQA  250 (452)
T ss_pred             HHHHHHHhhChh---------------------------------------------hhhcceEEEECCccCCHHHHHHH
Confidence            999887651000                                             01489999999999999999988


Q ss_pred             HHHhCCceecccCcchhcchhcccCCCC--CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccC
Q 005406          432 KVCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK  509 (698)
Q Consensus       432 ~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~  509 (698)
                      .. +++++++.||+||++..++...+.+  ...+++|+|+|+++++|++         +   ..|||+|+|++++.|||+
T Consensus       251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~---------g---~~Gel~v~g~~~~~gY~~  317 (452)
T PRK07445        251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA---------N---QTGNITIQAQSLALGYYP  317 (452)
T ss_pred             Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC---------C---CcceEEEeCCccchhhcC
Confidence            76 5899999999999986554433332  3457899999999999971         1   379999999999999998


Q ss_pred             ChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEE
Q 005406          510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLV  586 (698)
Q Consensus       510 ~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~v  586 (698)
                      ++.      +.+|||+|||+|++|+||+|+|.||.||+||+ +|++|+|.|||+++.+||+|.+|+|+|.++   ++.++
T Consensus       318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~  390 (452)
T PRK07445        318 QIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVT  390 (452)
T ss_pred             Ccc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEE
Confidence            643      35799999999999999999999999999996 899999999999999999999999999654   46789


Q ss_pred             EEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCC
Q 005406          587 AIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIK  666 (698)
Q Consensus       587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~  666 (698)
                      |++++.+..         .+                 .++++++++ .+|+.|++|+.+++++++|      +|++||++
T Consensus       391 a~vv~~~~~---------~~-----------------~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~  437 (452)
T PRK07445        391 AIYVPKDPS---------IS-----------------LEELKTAIK-DQLSPFKQPKHWIPVPQLP------RNPQGKIN  437 (452)
T ss_pred             EEEEeCCCC---------CC-----------------HHHHHHHHH-HhCCcccCCeEEEEecCCC------CCCCcccC
Confidence            999876531         00                 345566665 6799999999999999999      99999999


Q ss_pred             hHHHHHHHHHHHH
Q 005406          667 RPQAKERFAKAIS  679 (698)
Q Consensus       667 R~~l~~~~~~~i~  679 (698)
                      |++|++.|.++|+
T Consensus       438 r~~L~~~~~~~~~  450 (452)
T PRK07445        438 RQQLQQIAVQRLG  450 (452)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988774

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.3e-63  Score=556.62  Aligned_cols=484  Identities=18%  Similarity=0.217  Sum_probs=393.7

Q ss_pred             CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      ++.+.|.+.+..+|+++|+...   +      +.+||+||.+++.++|..|.+.|+++|++|+|+++|+.+|+++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            4678999999999999998653   2      359999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHH
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (698)
                      ++|++++|+++.++.+++.++++..+++.++++........       ... ++.++                  ...++
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~------------------~~~~~  125 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLS------------------ALEQA  125 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEch------------------Hhhhh
Confidence            99999999999999999999999999999999876432211       011 11111                  01111


Q ss_pred             HhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHH
Q 005406          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV  319 (698)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l  319 (698)
                      ...... ........++++++|+|||||||.||+|+++|+++.+.+.+....+++..++++++.+|++|.+++...+.++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l  204 (502)
T TIGR01734       126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL  204 (502)
T ss_pred             hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence            111111 1111234678999999999999999999999999999888777778888999999999999999998888999


Q ss_pred             HhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCch
Q 005406          320 YYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (698)
Q Consensus       320 ~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (698)
                      ..|+++++.+    .++..+++.++++++|.+.++|.++..+......                                
T Consensus       205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------------  252 (502)
T TIGR01734       205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------------  252 (502)
T ss_pred             HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------------
Confidence            9999999876    4788999999999999999999998766532100                                


Q ss_pred             hhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-----CCCCCCccCCC
Q 005406          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGSPN  469 (698)
Q Consensus       396 ~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~  469 (698)
                                .....++++.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++.....     .....++|.|.
T Consensus       253 ----------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~  322 (502)
T TIGR01734       253 ----------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK  322 (502)
T ss_pred             ----------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence                      000115899999999999999999988877 78999999999987644432211     13345799999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      ++++++|+| +++...+.++   .|||+++|++++.||+++++.|.+.|   ++++||+|||+|++|++ +++++||.+|
T Consensus       323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d  397 (502)
T TIGR01734       323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF  397 (502)
T ss_pred             CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence            999999999 4445555554   89999999999999999999998876   34569999999999976 9999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcC----CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS----FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~----~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      +||+ +|++|+|.+||+++.++|.|.+++|++..    ..+.++++|++......                 ..    ..
T Consensus       398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~----~~  455 (502)
T TIGR01734       398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE-----------------KE----FQ  455 (502)
T ss_pred             eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc-----------------cc----hh
Confidence            9997 89999999999999999999999999832    23678999998763211                 01    12


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      +.+++++.++ .+|+.|++|+.+++++++|      +|++||++|++|++.+.
T Consensus       456 ~~~~i~~~~~-~~l~~~~~P~~~~~v~~lP------~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       456 LTKAIKKELK-KSLPAYMIPRKFIYRDQLP------LTANGKIDRKALAEEVN  501 (502)
T ss_pred             hHHHHHHHHh-hhChhhcCCcEEEEccccC------CCCCCcccHHHHHHhhc
Confidence            2355666664 7899999999999999999      99999999999999763

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-63  Score=557.78  Aligned_cols=509  Identities=23%  Similarity=0.325  Sum_probs=400.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..++.++|+++++.+|+++|+.+.   +      +.+||.||++++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus        32 ~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA  102 (567)
T PRK06178         32 ERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG  102 (567)
T ss_pred             cccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            368999999999999999999653   2      3599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCC--CCC--CCCCC---CC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE--HLP--SLPST---SG  230 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~--~~~--~~~~~---~~  230 (698)
                      |+++|++++|++|.++.+++.+++++++++++++++...+.+.+..... ..+.++..+....  ...  .....   ..
T Consensus       103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  181 (567)
T PRK06178        103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPR  181 (567)
T ss_pred             HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccccccccccccccccc
Confidence            9999999999999999999999999999999999988777666554433 2344443321110  000  00000   00


Q ss_pred             ceEeeHHHHHhcCCC--CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc-ccccCCCcEEEEcCChh
Q 005406          231 VKLISYLQLQSQGCS--SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFYPSDIYMSYLPLA  307 (698)
Q Consensus       231 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~  307 (698)
                      .....+.++......  .........++++++|+|||||||.||||++||+++...+..... ...+.++|++++++|++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  261 (567)
T PRK06178        182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEF  261 (567)
T ss_pred             ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchH
Confidence            000112222221111  111223356899999999999999999999999998876554332 25678899999999999


Q ss_pred             hHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406          308 HIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (698)
Q Consensus       308 h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (698)
                      |.+++.. .+.+++.|+++++.+ .++..++..++++++|.+.++|..+..+.....  ..                   
T Consensus       262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~--~~-------------------  320 (567)
T PRK06178        262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR--FA-------------------  320 (567)
T ss_pred             HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--CC-------------------
Confidence            9999865 677899999999987 689999999999999999999998877654200  00                   


Q ss_pred             HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEE--ecCCCCCHHHHHHHHHHhCCceec-ccCcchhcchhcccCC---C-
Q 005406          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMG--SGASPLSPDVMDFLKVCFGCQVME-GYGMTETSCIISAIDK---G-  458 (698)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~--~gG~~l~~~~~~~~~~~~g~~l~~-~YG~TE~~~~~~~~~~---~-  458 (698)
                              .  .+           ..+++.+.  ++++++++++.+.|+..+|..++. .||+||++..+.....   . 
T Consensus       321 --------~--~~-----------l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~  379 (567)
T PRK06178        321 --------E--YD-----------LSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD  379 (567)
T ss_pred             --------C--CC-----------cchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc
Confidence                    0  00           02455543  446999999999999988877775 7999998765443221   1 


Q ss_pred             ---CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC
Q 005406          459 ---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG  535 (698)
Q Consensus       459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  535 (698)
                         ...++++|.|++|++++++|++++..++.++   .|||+++|++++.|||++++.+++.| .+|||+|||+|+++++
T Consensus       380 ~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~  455 (567)
T PRK06178        380 FDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQ  455 (567)
T ss_pred             cccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecC
Confidence               1345679999999999999977777776665   89999999999999999999999888 6899999999999999


Q ss_pred             CcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHH
Q 005406          536 GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQ  612 (698)
Q Consensus       536 G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~  612 (698)
                      |+++|+||++|+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.++++|++.+..        ..       
T Consensus       456 g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~-------  519 (567)
T PRK06178        456 GFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA--------DL-------  519 (567)
T ss_pred             CeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCC--------cC-------
Confidence            999999999999997 899999999999999999999999998543   46788999887532        00       


Q ss_pred             hhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          613 LCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       613 ~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                                ..++|+++++ .+|+.|++|. +++++++|      +|++||++|++|++.+++
T Consensus       520 ----------~~~~l~~~~~-~~l~~~~~p~-i~~v~~iP------~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        520 ----------TAAALQAWCR-ENMAVYKVPE-IRIVDALP------MTATGKVRKQDLQALAEE  565 (567)
T ss_pred             ----------CHHHHHHHHH-hcCcccCCce-EEEeccCC------CCCccceeHHHHHHHHHh
Confidence                      1345666665 6799999996 88899999      999999999999988865

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=4.7e-63  Score=559.14  Aligned_cols=506  Identities=25%  Similarity=0.365  Sum_probs=400.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..++.++|.++++++|+++|++..   +      +.+||+||.+++.++|.+|. +.|+++|++|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            467999999999999999999753   2      45999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCC-CC-------------
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HL-------------  222 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~-------------  222 (698)
                      ||+++|++++|++|.++.+++.+++++++++++++++.....+.......+ ...++..+.... ..             
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYV  173 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhh
Confidence            999999999999999999999999999999999998877655555444433 223333221000 00             


Q ss_pred             CC-CCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccc----cCC-
Q 005406          223 PS-LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ----FYP-  296 (698)
Q Consensus       223 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~----~~~-  296 (698)
                      .. ...........+.+..........+.....++++++++|||||||.||||++||.++...+......+.    +.+ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~  253 (560)
T PRK08751        174 KKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG  253 (560)
T ss_pred             hccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCC
Confidence            00 000000011345555544332222333456799999999999999999999999999877765444332    333 


Q ss_pred             CcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHH
Q 005406          297 SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE  373 (698)
Q Consensus       297 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  373 (698)
                      .+++++.+|++|.+++.. .+.++..|++.++..  .++..+++.++++++|++.++|.++..+.+...  .        
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~--------  323 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--F--------  323 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC--c--------
Confidence            367889999999999875 456677777776654  588999999999999999999999988765200  0        


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhc
Q 005406          374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS  453 (698)
Q Consensus       374 ~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~  453 (698)
                                           .-++   +        +++|.+++||+++++.+.+.|++.+|+.+++.||+||++..++
T Consensus       324 ---------------------~~~~---l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  371 (560)
T PRK08751        324 ---------------------DQID---F--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAAC  371 (560)
T ss_pred             ---------------------CCcc---h--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCcee
Confidence                                 0000   0        4799999999999999999999988999999999999987665


Q ss_pred             ccCCC-CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEE
Q 005406          454 AIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW  532 (698)
Q Consensus       454 ~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~  532 (698)
                      ..... ....+++|.|+++++++++| +++..++.+.   .|||+++|+.++.||+++++.|++.|+.+|||+|||+|++
T Consensus       372 ~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  447 (560)
T PRK08751        372 INPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM  447 (560)
T ss_pred             cccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence            44322 24457899999999999999 5666666555   8999999999999999999999999988999999999999


Q ss_pred             ecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCccc
Q 005406          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFED  609 (698)
Q Consensus       533 ~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~  609 (698)
                      +++|.+++.||.+|+||+ +|++|+|.+||+++..+|+|.+++|++.++   ++.++++++.....         .+   
T Consensus       448 ~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~~---  514 (560)
T PRK08751        448 DEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA---------LT---  514 (560)
T ss_pred             cCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC---------CC---
Confidence            999999999999999997 899999999999999999999999999654   35667777654311         11   


Q ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          610 LEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       610 ~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                                    .+++++.++ .+|+.|++|+.|++++++|      +|++||++|++|++.
T Consensus       515 --------------~~~l~~~~~-~~l~~~~~P~~v~~v~~lP------~t~~gKv~r~~L~~~  557 (560)
T PRK08751        515 --------------AEDVKAHAR-ANLTGYKQPRIIEFRKELP------KTNVGKILRRELRDA  557 (560)
T ss_pred             --------------HHHHHHHHH-HhhhhccCCeEEEEhhhCC------CCccccccHHHHHHh
Confidence                          234555554 5789999999999999999      999999999999875

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-63  Score=559.70  Aligned_cols=509  Identities=24%  Similarity=0.335  Sum_probs=397.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      .++++++|...+.++|+++|+.+.   +      +.+||+||++++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        23 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   93 (563)
T PRK06710         23 IQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYG   93 (563)
T ss_pred             cccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence            468999999999999999999764   2      4599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCC-CCCCC-----CCC----
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD-EHLPS-----LPS----  227 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~-~~~~~-----~~~----  227 (698)
                      |+++|++++|++|.++.+++.++++.+++++++++......+....... ....+++..... .....     ...    
T Consensus        94 ~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (563)
T PRK06710         94 TLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-KIEHVIVTRIADFLPFPKNLLYPFVQKKQS  172 (563)
T ss_pred             HHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-ccceeEEeccccccccccccccchhhcccc
Confidence            9999999999999999999999999999999999876544433322111 122222211000 00000     000    


Q ss_pred             ------CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc-ccccC-CCcE
Q 005406          228 ------TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFY-PSDI  299 (698)
Q Consensus       228 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~-~~d~  299 (698)
                            ........|..+.... ..........++++++++|||||||.||||+++|+++......... .++.. .+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~  251 (563)
T PRK06710        173 NLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEV  251 (563)
T ss_pred             cccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCce
Confidence                  0000001122221111 1111111123578999999999999999999999998755432222 23333 4568


Q ss_pred             EEEcCChhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005406          300 YMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT  377 (698)
Q Consensus       300 ~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~  377 (698)
                      +++++|++|.+++.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+......              
T Consensus       252 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------  317 (563)
T PRK06710        252 VLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL--------------  317 (563)
T ss_pred             EEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc--------------
Confidence            899999999999876 456888999998876 6899999999999999999999999887642100              


Q ss_pred             HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC
Q 005406          378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK  457 (698)
Q Consensus       378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~  457 (698)
                                       .           ....+++|.+++||+++++++.+++.+.+++++++.||+||++.++.....
T Consensus       318 -----------------~-----------~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  369 (563)
T PRK06710        318 -----------------K-----------EYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFL  369 (563)
T ss_pred             -----------------c-----------cCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcc
Confidence                             0           000047899999999999999999998889999999999999876543322


Q ss_pred             -CCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCC
Q 005406          458 -GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG  536 (698)
Q Consensus       458 -~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G  536 (698)
                       .....+++|.|.++++++++|++++..++.+.   .|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|
T Consensus       370 ~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g  445 (563)
T PRK06710        370 WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDG  445 (563)
T ss_pred             cccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCC
Confidence             22345789999999999999977766666665   89999999999999999999999988 68999999999999999


Q ss_pred             cEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHh
Q 005406          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQL  613 (698)
Q Consensus       537 ~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~  613 (698)
                      .++++||.||+||+ +|++|+|.+||+++.++|.|.+++|++.++   ++.++++|++.+..        ..+       
T Consensus       446 ~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~-------  509 (563)
T PRK06710        446 FFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT--------ECS-------  509 (563)
T ss_pred             cEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCC--------CCC-------
Confidence            99999999999997 899999999999999999999999999543   56788888877632        000       


Q ss_pred             hCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          614 CNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       614 ~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                                .++++++++ ..|+.|++|..|.+++++|      +|++||++|++|++.+..
T Consensus       510 ----------~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        510 ----------EEELNQFAR-KYLAAYKVPKVYEFRDELP------KTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             ----------HHHHHHHHH-HhcccccCCcEEEEcccCC------CCccchhhHHHHHHHHhh
Confidence                      345556664 6799999999999999999      999999999999987754

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.9e-62  Score=551.54  Aligned_cols=506  Identities=26%  Similarity=0.363  Sum_probs=396.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++|+++|+...   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3558999999999999999998653   2      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc--hHHHHhhhhcCCceeEEEEeCCCCCCCCCC---CCCCCc
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT--LNTLLSFISEIPSVHLIVVVGGKDEHLPSL---PSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~---~~~~~~  231 (698)
                      ||+++|++++|++|.++.+++.+++++++++++|+++..  ...+.+.... ..+..+++.+.........   ......
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP  168 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence            999999999999999999999999999999999997531  1122221111 1133444443321100000   000112


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc-----ccccCCCcEEEEcCCh
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-----MVQFYPSDIYMSYLPL  306 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl  306 (698)
                      ...+++++...... ........++++++++|||||||.||||+++|+++.........     .......+++++.+|+
T Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  247 (541)
T TIGR03205       169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL  247 (541)
T ss_pred             ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence            24566776653322 12223456789999999999999999999999998765542211     1122345799999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      +|.+++.. .+.+++.|+++++.. .++..+++.|+++++|++.++|+++..+.+...  .                   
T Consensus       248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~-------------------  306 (541)
T TIGR03205       248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--L-------------------  306 (541)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--c-------------------
Confidence            99999876 567888999988876 689999999999999999999999987754100  0                   


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCC
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSG  463 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~  463 (698)
                                           .....+++|.+++||+++++++.+++.+.+++++++.||+||++..++..... ...++
T Consensus       307 ---------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  365 (541)
T TIGR03205       307 ---------------------EKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG  365 (541)
T ss_pred             ---------------------cccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence                                 00001479999999999999999999888899999999999998766554332 23467


Q ss_pred             CccCCCCCcEEEEEecC-CCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEc
Q 005406          464 HVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~-~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~G  542 (698)
                      ++|.|++++++++++.+ +++.++.+   ..|||+++|++++.|||++|+.|++.| .++||+|||+++++++|+++|+|
T Consensus       366 ~~G~~~~~~~~~v~~~d~~~~~~~~g---~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G  441 (541)
T TIGR03205       366 SIGLMLPGIELDVVSLDDPTKVLPPG---EVGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD  441 (541)
T ss_pred             CcceeccCceeEEEecCCCCccCCCC---CeeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence            89999999999987643 33444444   489999999999999999999999998 57899999999999999999999


Q ss_pred             cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA  619 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (698)
                      |.||+||+ +|++|+|.+||+++.++|+|.+++|++.++   ++.+++++++.++..       ..+             
T Consensus       442 R~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------~~~-------------  500 (541)
T TIGR03205       442 RKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK-------PFS-------------  500 (541)
T ss_pred             cccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC-------cCC-------------
Confidence            99999996 899999999999999999999999998543   467888888775310       000             


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                          .+++.++++ +.|+.|++|+.|++++++|      +|++||++|++|+
T Consensus       501 ----~~~l~~~~~-~~l~~~~~P~~i~~~~~iP------~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 ----LDELRAFLA-GKLGKHELPVAVEFVDELP------RTPVGKLSRHELR  541 (541)
T ss_pred             ----HHHHHHHHH-hhcccccCCcEEEEeccCC------CCcccceeHhhcC
Confidence                234555554 6799999999999999999      9999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-63  Score=545.28  Aligned_cols=453  Identities=23%  Similarity=0.292  Sum_probs=374.8

Q ss_pred             HHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec
Q 005406           89 VENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL  168 (698)
Q Consensus        89 a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl  168 (698)
                      +.+.++++|+.+.   +      +.+||+||.++++++|..|+     ++++|+++++|+++|+++++||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            4567888888653   2      46999999999999999996     46899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCC
Q 005406          169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQ  248 (698)
Q Consensus       169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (698)
                      ++.++.+++.++++++++++++++.+..      ...++.+...  ...                ..+           .
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~~~--~~~----------------~~~-----------~  120 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVPVR--LHA----------------RSW-----------H  120 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCcc------cccccceeee--ccc----------------ccc-----------c
Confidence            9999999999999999999999976311      0011111100  000                000           0


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEE
Q 005406          249 PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGF  327 (698)
Q Consensus       249 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~  327 (698)
                      ......++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .+.+++.|+++++
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  200 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVH  200 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEe
Confidence            111246789999999999999999999999999998887777788899999999999999999887 6778999999988


Q ss_pred             eC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005406          328 YQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR  406 (698)
Q Consensus       328 ~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~  406 (698)
                      .+ .++..+++.++ +++|++.++|+++..+.+....                                           
T Consensus       201 ~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-------------------------------------------  236 (471)
T PRK07787        201 TGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-------------------------------------------  236 (471)
T ss_pred             cCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-------------------------------------------
Confidence            76 78999999999 9999999999999888752100                                           


Q ss_pred             HHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCC
Q 005406          407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS  486 (698)
Q Consensus       407 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~  486 (698)
                      .....++|.+++||+++++++.++|.+.++.++++.||+||++...+........++++|+|+++++++|+|.+ +..++
T Consensus       237 ~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~-~~~~~  315 (471)
T PRK07787        237 ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDED-GGPVP  315 (471)
T ss_pred             cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCC-CCCCC
Confidence            00014799999999999999999999989999999999999986554443334456789999999999999944 44443


Q ss_pred             C-CCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC-CCeEecCCceeecchHHHHH
Q 005406          487 E-DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLAQGEYVAPEKIENV  564 (698)
Q Consensus       487 ~-~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~-~d~ikls~G~~v~p~eIE~~  564 (698)
                      . +.  ..|||+++|++++.||+++++.|++.|..+|||+|||+|++++||+++++||+ |++||. +|++|+|.+||++
T Consensus       316 ~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~  392 (471)
T PRK07787        316 HDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETA  392 (471)
T ss_pred             CCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHH
Confidence            2 21  27999999999999999999999999988999999999999999999999996 899996 8999999999999


Q ss_pred             HhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcce
Q 005406          565 YAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEY  641 (698)
Q Consensus       565 l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~  641 (698)
                      +.++|.|.+++|++.++   ++.++++|++....          +                 .+++.++++ ..|+.|++
T Consensus       393 l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~----------~-----------------~~~l~~~l~-~~l~~~~~  444 (471)
T PRK07787        393 LLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV----------A-----------------ADELIDFVA-QQLSVHKR  444 (471)
T ss_pred             HHhCCCcceEEEEcccccccCeEEEEEEEeCCCC----------C-----------------HHHHHHHHH-hhcccccC
Confidence            99999999999999654   46889999874311          1                 234555554 67899999


Q ss_pred             eeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          642 AKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       642 p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      |..|++++++|      +|++||++|++|++
T Consensus       445 P~~i~~~~~iP------~~~~GKi~r~~L~~  469 (471)
T PRK07787        445 PREVRFVDALP------RNAMGKVLKKQLLS  469 (471)
T ss_pred             CcEEEEeccCC------CCCCccccHHHhcc
Confidence            99999999999      99999999999975

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.8e-62  Score=597.85  Aligned_cols=496  Identities=22%  Similarity=0.230  Sum_probs=392.9

Q ss_pred             CCCCHHHHHHHHHHhCCC-CCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...++.+.|.+.++++|+ +.++.+.   +     .+.+||+||+++++++|++|++ |+++||+|+++++|++++++++
T Consensus       629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~-----~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~  699 (1140)
T PRK06814        629 YDRTLFEALIEAAKIHGFKKLAVEDP---V-----NGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF  699 (1140)
T ss_pred             ccCCHHHHHHHHHHHcCCCCeEeECC---C-----CCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence            457788999999999875 5555321   1     2469999999999999999975 9999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHH--HhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceE
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL--LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      +||+++|++++|+|++++.+++.++++++++++++++.+.....  ......++....++.+++......        ..
T Consensus       700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~  771 (1140)
T PRK06814        700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------LA  771 (1140)
T ss_pred             HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------hH
Confidence            99999999999999999999999999999999999987654321  111122232333444443211000        00


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHH
Q 005406          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (698)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (698)
                      ..+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.
T Consensus       772 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  850 (1140)
T PRK06814        772 DKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLT  850 (1140)
T ss_pred             HHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHH
Confidence            011111111111 1111135789999999999999999999999999999888877778899999999999999999985


Q ss_pred             H-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          314 N-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       314 ~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      . .+.+++.|+++++.+  .+...+.+.++++++|++.++|+++..+.+...                            
T Consensus       851 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------------  902 (1140)
T PRK06814        851 GGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------------  902 (1140)
T ss_pred             HHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------------
Confidence            4 677899999999876  466778899999999999999999887754200                            


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP  470 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~  470 (698)
                                      ....+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++...+.....+++|+|+|
T Consensus       903 ----------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~  966 (1140)
T PRK06814        903 ----------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLP  966 (1140)
T ss_pred             ----------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCC
Confidence                            0001489999999999999999999998999999999999998776655444556789999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEec
Q 005406          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (698)
Q Consensus       471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikl  550 (698)
                      ++++++++.++     .+   +.|||+++|++++.|||++++.+......+|||+|||+|++|+||+++++||.||+||+
T Consensus       967 g~~~~~~~~~~-----~~---~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~ 1038 (1140)
T PRK06814        967 GIEYRLEPVPG-----ID---EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKI 1038 (1140)
T ss_pred             CCeEEEeecCC-----CC---CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeee
Confidence            99999987432     12   37999999999999999987544322236899999999999999999999999999997


Q ss_pred             CCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005406          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEM  627 (698)
Q Consensus       551 s~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  627 (698)
                       +|++|+|.|||+++.+||.|.+++|++.++   ++.+++++...+.           +                 .+++
T Consensus      1039 -~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~-----------~-----------------~~~l 1089 (1140)
T PRK06814       1039 -AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDA-----------T-----------------RAAF 1089 (1140)
T ss_pred             -CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCc-----------C-----------------HHHH
Confidence             899999999999999999999999998654   3566665542211           0                 3455


Q ss_pred             HHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          628 NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       628 ~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      ++++++.+++.|++|+.|++++++|      +|++||++|++|++.+.+.
T Consensus      1090 ~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814       1090 LAHAKAAGASELMVPAEIITIDEIP------LLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred             HHHHHHcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence            6666556799999999999999999      9999999999999877654

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-62  Score=548.52  Aligned_cols=484  Identities=18%  Similarity=0.180  Sum_probs=378.0

Q ss_pred             HHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEE
Q 005406           87 YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV  166 (698)
Q Consensus        87 ~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~v  166 (698)
                      .+++++|+++|+.+.   +.    .+.+||+||.++++++|++|.+.|+++||+|+++++|+++|++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~----~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ET----GEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CC----CeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            457789999999653   21    25699999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCC
Q 005406          167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS  246 (698)
Q Consensus       167 pl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (698)
                      |+++.++++++.++++++++++++++.............   ....+.+....         .  ....+++......  
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~--~~~~~~~~~~~~~--  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI---------D--GFGSFEAALAGAG--  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc---------c--ccccHHHHhcccC--
Confidence            999999999999999999999999986543322221111   11122221110         0  1123333322110  


Q ss_pred             CCCCCCCCCCCeEEEEecCCCCCCcceeee--chHHHHHHH----HhcccccccCCCcEEEEcCChhhHHHHHHHHHHHH
Q 005406          247 PQPFCPPKPEDIATICYTSGTTGTPKGAVL--THGNLISNV----AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (698)
Q Consensus       247 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (698)
                        + .....+++++|+|||||||.||||++  +|.++....    ......+.+..+|++++.+|++|.+++...+..+.
T Consensus       142 --~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~  218 (501)
T PRK13390        142 --P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA  218 (501)
T ss_pred             --C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence              0 01122357999999999999999995  555554321    11122467788999999999999998876656677


Q ss_pred             hCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          321 YGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      .|+++++.+ .++..+++.|+++++|++.++|+++..+........                                  
T Consensus       219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------  264 (501)
T PRK13390        219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------------  264 (501)
T ss_pred             cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------------
Confidence            899998877 689999999999999999999999988865210000                                  


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEEEe
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVD  478 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d  478 (698)
                            +.....++|.+++||+++++++.+.+.+.++.++++.||+||+++++...... ....+++|+|+++ +++|+|
T Consensus       265 ------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d  337 (501)
T PRK13390        265 ------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD  337 (501)
T ss_pred             ------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence                  00001478999999999999999999988899999999999998654432221 2356789999999 799998


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC--CCceecCcEEEEecCCcEEEEccCCCeEecCCceee
Q 005406          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (698)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~--~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v  556 (698)
                       +++..++.++   .|||+++|++++.||+++|+.|++.|..  +||++|||+|++|++|++++.||.||+||+ +|++|
T Consensus       338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v  412 (501)
T PRK13390        338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNI  412 (501)
T ss_pred             -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-CCeee
Confidence             5556555554   8999999999999999999999988743  689999999999999999999999999996 89999


Q ss_pred             cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE  633 (698)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  633 (698)
                      +|.+||+++.+||.|.+++|++.++   ++.+++++++.+..          .        ..    +...++|.++++ 
T Consensus       413 ~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~----------~--------~~----~~~~~~l~~~~~-  469 (501)
T PRK13390        413 YPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI----------R--------GS----DELARELIDYTR-  469 (501)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC----------C--------cc----hhhHHHHHHHHH-
Confidence            9999999999999999999999654   46788888876531          0        00    112356666665 


Q ss_pred             CCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          634 GQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       634 ~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                      .+|+.|++|..+++++++|      +|++||++|++|+
T Consensus       470 ~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~L~  501 (501)
T PRK13390        470 SRIAHYKAPRSVEFVDELP------RTPTGKLVKGLLR  501 (501)
T ss_pred             HhcccCCCCcEEEEeccCC------CCCccceehhhcC
Confidence            6799999999999999999      9999999999874

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-62  Score=546.15  Aligned_cols=476  Identities=19%  Similarity=0.228  Sum_probs=382.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...++.+.|.+.++.+||++|+.+.   +      +.+||+||.++++++|++|++.|+++|++|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999653   2      259999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.+++++++++.++++......+.....      .++.++...                 
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~-----------------  160 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT-----------------  160 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch-----------------
Confidence            999999999999999999999999999999999998776554433211      122222110                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHH--HHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS--NVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      .....      ....+..+++.++|+|||||||.||||+++|.....  ........+++.++|++++.+|++|.+++..
T Consensus       161 ~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  234 (516)
T PRK13383        161 AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM  234 (516)
T ss_pred             hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence            00000      001112345678999999999999999999984321  1122223467788999999999999999988


Q ss_pred             HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+.++..|+++++.. .++..+++.++++++|.+.++|.++..+.+...... .                          
T Consensus       235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~--------------------------  287 (516)
T PRK13383        235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-A--------------------------  287 (516)
T ss_pred             HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-c--------------------------
Confidence            888899999998766 789999999999999999999999988865211000 0                          


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCc
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPAC  472 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~  472 (698)
                                   ....+++|.+++||+++++++.+.|.+.+|+.+++.||+||++..+...... ....+++|+|++++
T Consensus       288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~  354 (516)
T PRK13383        288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC  354 (516)
T ss_pred             -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence                         0001489999999999999999999999999999999999998655433221 23467899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCC
Q 005406          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~  552 (698)
                      +++|+| +++...+.+   +.|||+++|+.++.||++++..   .+ .+|||+|||+|++|++|+++++||.||+||+ +
T Consensus       355 ~~~i~d-~~~~~~~~g---~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~  425 (516)
T PRK13383        355 PVRILD-RNNRPVGPR---VTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-G  425 (516)
T ss_pred             EEEEEC-CCCCCCCCC---CceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCCccEEEeccccceEEE-C
Confidence            999999 445554444   4899999999999999987642   23 5899999999999999999999999999997 8


Q ss_pred             ceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      |++|+|.+||.+|.++|.|.+++|++.++   ++.++++|++++..        ..+                 .++|++
T Consensus       426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l~~  480 (516)
T PRK13383        426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGS--------GVD-----------------AAQLRD  480 (516)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence            99999999999999999999999998543   56788899877531        000                 234555


Q ss_pred             HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHH
Q 005406          630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAK  671 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~  671 (698)
                      +++ .+|+.|++|..|++++++|      +|++||++|++|+
T Consensus       481 ~~~-~~l~~~~~p~~i~~v~~iP------~t~~gKi~r~~L~  515 (516)
T PRK13383        481 YLK-DRVSRFEQPRDINIVSSIP------RNPTGKVLRKELP  515 (516)
T ss_pred             HHH-HhcccCCCCcEEEEeCCCC------CCCCCcCcHHHhC
Confidence            554 6789999999999999999      9999999999874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=7.8e-62  Score=542.50  Aligned_cols=483  Identities=19%  Similarity=0.218  Sum_probs=397.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      +++.++|++.+..+|+++++...   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+.+|+++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            56889999999999999998653   1      45999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.++++.+++++++++......       ..                      .+..+.+++
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------------~~~~~~~~~  123 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL----------------------GIPVITLDE  123 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc----------------------CCcEEehHH
Confidence            9999999999999999999999999999999998654100       00                      011122222


Q ss_pred             HHhcC--CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406          239 LQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (698)
Q Consensus       239 ~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (698)
                      +....  ...........++++++++|||||||.||||.++|+++...+.+....+.+..++++++.+|++|..+....+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  203 (503)
T PRK04813        124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY  203 (503)
T ss_pred             hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence            22211  0111112335678999999999999999999999999998888777778888999999999999999988888


Q ss_pred             HHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          317 VSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .++..|+++++.+    .++..+++.++++++|++.++|+++..+.....                              
T Consensus       204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------------  253 (503)
T PRK04813        204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS------------------------------  253 (503)
T ss_pred             HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc------------------------------
Confidence            8999999999887    478899999999999999999999876543210                              


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-----CCCCCCcc
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVG  466 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG  466 (698)
                                  ..+...+++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++.....     .....++|
T Consensus       254 ------------~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g  321 (503)
T PRK04813        254 ------------FNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG  321 (503)
T ss_pred             ------------cCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence                        0001115899999999999999999999888 78999999999997654432211     13445799


Q ss_pred             CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEEEcc
Q 005406          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      .|.++++++|+| +++..++.+.   .|||+++|++++.|||++++.|.+.|   ++.+||+|||+|++ ++|++++.||
T Consensus       322 ~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR  396 (503)
T PRK04813        322 YAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR  396 (503)
T ss_pred             ccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence            999999999999 4555555554   89999999999999999999998887   33459999999999 9999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||+ +|++|+|.+||+++.++|+|.+++|++.+.   .+.+++++++.++...                 ..    
T Consensus       397 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~----  454 (503)
T PRK04813        397 IDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE-----------------RE----  454 (503)
T ss_pred             ccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc-----------------cc----
Confidence            9999997 899999999999999999999999998443   4678999998763210                 01    


Q ss_pred             HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                      ..+.++++++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.
T Consensus       455 ~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        455 FELTKAIKKELK-ERLMEYMIPRKFIYRDSLP------LTPNGKIDRKALIEEVN  502 (503)
T ss_pred             chhHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCCCCCcHHHHHHHhc
Confidence            123456666665 6799999999999999999      99999999999998875

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-61  Score=541.85  Aligned_cols=495  Identities=19%  Similarity=0.227  Sum_probs=396.8

Q ss_pred             HHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005406           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (698)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (698)
                      ...++++||++|+.+.   ++    .+.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~----~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---ST----GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4578889999998763   22    2469999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCC
Q 005406          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (698)
Q Consensus       166 vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (698)
                      +|+++.++.+++.++++.++++.++++......+.+....++.....+..+.....         .....+.+.....  
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------EGFVGYAEAVAGL--  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------cccccHHHHhcCC--
Confidence            99999999999999999999999999988776666555555555555555432110         0122344433211  


Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCCCcceeee--chHHHHHH---HHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHH
Q 005406          246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVL--THGNLISN---VAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (698)
Q Consensus       246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~---~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (698)
                       +. ....+.++.++++|||||||.||||++  +|.++...   .......+++..++++++.+|++|.+++...+.++.
T Consensus       146 -~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~  223 (511)
T PRK13391        146 -PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR  223 (511)
T ss_pred             -CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence             11 111234567899999999999999995  46665432   223334467788999999999999999988888999


Q ss_pred             hCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          321 YGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      .|+++++.+ .++..+++.++++++|++.++|+++..+.+......                                  
T Consensus       224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------------  269 (511)
T PRK13391        224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------------  269 (511)
T ss_pred             cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------
Confidence            999999887 799999999999999999999999887764211000                                  


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEEEe
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVD  478 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d  478 (698)
                            .....+++|.+++||+++++++.+.+++.+|..+++.||+||+++++...... ...++++|+|+++ +++|+|
T Consensus       270 ------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d  342 (511)
T PRK13391        270 ------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD  342 (511)
T ss_pred             ------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence                  00011589999999999999999999998899999999999998765443222 2456799999999 699998


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCC-CceecCcEEEEecCCcEEEEccCCCeEecCCceeec
Q 005406          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVA  557 (698)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~-gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~  557 (698)
                       +++...+.+.   .|||+++|+ ++.|||++++.+++.|..+ |||+|||+|+++++|.+++.||.||+||+ +|++|+
T Consensus       343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~  416 (511)
T PRK13391        343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIY  416 (511)
T ss_pred             -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-CCEEEC
Confidence             4555555544   899999999 8899999999999988655 99999999999999999999999999996 899999


Q ss_pred             chHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhC
Q 005406          558 PEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEG  634 (698)
Q Consensus       558 p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  634 (698)
                      |.+||+++.+||.|.+++|++.++   ++.+++++++.++.          .        .+    +.+.++|+++++ .
T Consensus       417 ~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~----------~--------~~----~~~~~~l~~~~~-~  473 (511)
T PRK13391        417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV----------D--------PG----PALAAELIAFCR-Q  473 (511)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC----------C--------cc----cchHHHHHHHHH-h
Confidence            999999999999999999998543   45788888876531          0        01    123456777775 7


Q ss_pred             CCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          635 QLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       635 ~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .|+.|++|..|.+++++|      +|++||++|+.|++.|..
T Consensus       474 ~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        474 RLSRQKCPRSIDFEDELP------RLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             hcccCcCCcEEEEeecCC------CCCccceeHHHHHHHhhc
Confidence            899999999999999999      999999999999998854

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-61  Score=546.48  Aligned_cols=511  Identities=26%  Similarity=0.325  Sum_probs=399.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..++.++|+.+++++|+++|+...   +      +.+||.||.++++++|.+|.+ .|+++|++|+++++|+++|++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999653   2      459999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCC--CC----------
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL--PS----------  224 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--~~----------  224 (698)
                      ||+++|++++|++|.++.+++.++++.+++++++++.+....+.+..... ..+.++.........  ..          
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYI  171 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccccccccccchhhhc
Confidence            99999999999999999999999999999999999876555444433221 222222221110000  00          


Q ss_pred             ---CCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccc---ccCCCc
Q 005406          225 ---LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSD  298 (698)
Q Consensus       225 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d  298 (698)
                         ..........++.+....+...........++++++|+|||||||.||||+++|+++...+......+   ....++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~  251 (560)
T PRK08974        172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE  251 (560)
T ss_pred             ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence               00000001123333333322211222235679999999999999999999999999987665433222   234567


Q ss_pred             EEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHH
Q 005406          299 IYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL  375 (698)
Q Consensus       299 ~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l  375 (698)
                      .++..+|++|.+++.. .+..+..|+++++..  .++..+++.++++++|.+.++|+++..+......            
T Consensus       252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------  319 (560)
T PRK08974        252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF------------  319 (560)
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc------------
Confidence            8899999999999766 566778888877654  5788899999999999999999999888652100            


Q ss_pred             HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhccc
Q 005406          376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI  455 (698)
Q Consensus       376 ~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  455 (698)
                                                    .....+++|.+++||+++++.+.+.|++.+|+++++.||+||++.+++..
T Consensus       320 ------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  369 (560)
T PRK08974        320 ------------------------------QELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN  369 (560)
T ss_pred             ------------------------------ccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence                                          00001479999999999999999999998899999999999998776654


Q ss_pred             CCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec
Q 005406          456 DKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (698)
Q Consensus       456 ~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  534 (698)
                      .... ...+++|.|+++++++|+| +++..++.+.   .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++
T Consensus       370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~  444 (560)
T PRK08974        370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE  444 (560)
T ss_pred             CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence            4322 3467899999999999999 4556565554   89999999999999999999999988 789999999999999


Q ss_pred             CCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHH
Q 005406          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLE  611 (698)
Q Consensus       535 ~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~  611 (698)
                      +|.++++||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.++   ++.++++++.....         .+     
T Consensus       445 ~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~~-----  509 (560)
T PRK08974        445 EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------LT-----  509 (560)
T ss_pred             CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------CC-----
Confidence            9999999999999997 799999999999999999999999998543   34566666654311         00     


Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       612 ~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                                  .++++++++ ..|+.|++|..+++++++|      +|++||++|+.|++.+.+..+
T Consensus       510 ------------~~~l~~~l~-~~l~~~~~P~~~~~~~~lP------~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        510 ------------EEELITHCR-RHLTGYKVPKLVEFRDELP------KSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             ------------HHHHHHHHH-hhcccccCCcEEEEhhhCC------CCCCCcEeHHHHHHHHHhhhc
Confidence                        234555554 6789999999999999999      999999999999998776543

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-62  Score=553.39  Aligned_cols=497  Identities=24%  Similarity=0.344  Sum_probs=381.6

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .++..++.++|+..++++|+..++ .     ......+.+||.||+.++.++|++|+++|+++|++|+++++|+++|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~   90 (579)
T PRK09192         17 YADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA   90 (579)
T ss_pred             ccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence            446789999999999999876654 2     1122357899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCC-------HHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCC
Q 005406          155 DHACSAYSYISVPLYDTLG-------PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS  227 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~-------~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~  227 (698)
                      ++||+++|++++|+++.++       .+++.++++.++++++|++......+.+.....+   .++              
T Consensus        91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~~--------------  153 (579)
T PRK09192         91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LLH--------------  153 (579)
T ss_pred             HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---ccc--------------
Confidence            9999999999999987543       6899999999999999998876655544321111   111              


Q ss_pred             CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc-ccccCCCcEEEEcCCh
Q 005406          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFYPSDIYMSYLPL  306 (698)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl  306 (698)
                           ..++.++...... ........++++++|+|||||||.||||+++|+++++.+..... .+++.++|++++++|+
T Consensus       154 -----~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  227 (579)
T PRK09192        154 -----VLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF  227 (579)
T ss_pred             -----eeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence                 1223333222111 11222346789999999999999999999999999988877776 6888999999999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (698)
                      +|.+++.. ++.++..|+++++.+     .++..+++.+.++++++++..|..+..+........               
T Consensus       228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~---------------  292 (579)
T PRK09192        228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKD---------------  292 (579)
T ss_pred             CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhcccc---------------
Confidence            99999886 456788899987765     268889999999999987765554444332110000               


Q ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhcc
Q 005406          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISA  454 (698)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~~  454 (698)
                                              .+....+++|.+++||+++++.+.+.+.+.+.      ..+++.||+||+++.++.
T Consensus       293 ------------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~  348 (579)
T PRK09192        293 ------------------------LAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF  348 (579)
T ss_pred             ------------------------ccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence                                    00000148999999999999999998888763      349999999999876554


Q ss_pred             cCCCC----------------------------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcccc
Q 005406          455 IDKGD----------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQG  506 (698)
Q Consensus       455 ~~~~~----------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~G  506 (698)
                      .....                            ...+++|.|+|+++++|+| +++..++.+.   .|||+++|+++++|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g  424 (579)
T PRK09192        349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG  424 (579)
T ss_pred             cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence            32211                            0125799999999999999 4555555554   89999999999999


Q ss_pred             ccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCce--eEEEEEcCC--C
Q 005406          507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL--QCFIYGDSF--N  582 (698)
Q Consensus       507 Y~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~--~~~V~g~~~--~  582 (698)
                      ||++ +.+.+.|..+|||+|||+|++ ++|+++|+||+||+||+ +|++|+|.|||++|.+||+|.  +|+|++.++  +
T Consensus       425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~  501 (579)
T PRK09192        425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG  501 (579)
T ss_pred             hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC
Confidence            9999 677788888999999999999 99999999999999997 899999999999999999998  898888543  3


Q ss_pred             CeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCCCCccC
Q 005406          583 SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVENGLLT  660 (698)
Q Consensus       583 ~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T  660 (698)
                      +.++++|++....                     ....+.+.+.+++.+.    +.+++|..+.+++  ++|      +|
T Consensus       502 ~~~~~~v~~~~~~---------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~~~~lP------~t  550 (579)
T PRK09192        502 EKIVLLVQCRISD---------------------EERRGQLIHALAALVR----SEFGVEAAVELVPPHSLP------RT  550 (579)
T ss_pred             eeEEEEEEecCCC---------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeCCCCcC------CC
Confidence            5777887765421                     0011223333333321    2466777777775  799      99


Q ss_pred             cccCCChHHHHHHHHHH
Q 005406          661 PTFKIKRPQAKERFAKA  677 (698)
Q Consensus       661 ~~GKi~R~~l~~~~~~~  677 (698)
                      ++||++|++|++.|.+.
T Consensus       551 ~~GKv~R~~l~~~~~~~  567 (579)
T PRK09192        551 SSGKLSRAKAKKRYLSG  567 (579)
T ss_pred             CCcchhHHHHHHHHHcC
Confidence            99999999999988763

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.8e-62  Score=536.94  Aligned_cols=442  Identities=24%  Similarity=0.322  Sum_probs=371.1

Q ss_pred             HHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005406           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (698)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (698)
                      ...++++|+++|+...         .+.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        10 ~~~a~~~~~~~a~~~~---------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029         10 RHWAQVRPQAIALRLN---------DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             HHHHHhCCCceeeecC---------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            5568899999999642         2459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCC
Q 005406          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (698)
Q Consensus       166 vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (698)
                      +|+++.++.+++.++++++++++++++.+... +..       +....                      +.   .   .
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~~----------------------~~---~---~  124 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSLH----------------------LQ---L---V  124 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------ccccc----------------------cc---c---c
Confidence            99999999999999999999999998765421 100       00000                      00   0   0


Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEE
Q 005406          246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV  325 (698)
Q Consensus       246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~  325 (698)
                      .........++++++++|||||||.||||++||++++..+......+++.++|++++.+|++|.+++...+.++..|+++
T Consensus       125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v  204 (458)
T PRK09029        125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATL  204 (458)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceE
Confidence            00111234678999999999999999999999999999988887778899999999999999999988778889999999


Q ss_pred             EEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005406          326 GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI  405 (698)
Q Consensus       326 ~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~  405 (698)
                      ++.+.  ..+++.+  .++|.+..+|+++..+......                                          
T Consensus       205 ~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~------------------------------------------  238 (458)
T PRK09029        205 VVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE------------------------------------------  238 (458)
T ss_pred             EeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc------------------------------------------
Confidence            98664  4566666  4799999999999877652100                                          


Q ss_pred             HHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCC
Q 005406          406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT  485 (698)
Q Consensus       406 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~  485 (698)
                          ..++|.+++||+++++.+.+++.. +|+++++.||+||++...+....  ....++|+|+++++++|++       
T Consensus       239 ----~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~-------  304 (458)
T PRK09029        239 ----PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD-------  304 (458)
T ss_pred             ----CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC-------
Confidence                137999999999999999999886 49999999999999865543322  2235699999999999976       


Q ss_pred             CCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHH
Q 005406          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY  565 (698)
Q Consensus       486 ~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l  565 (698)
                              |||+++|++++.||+++++.+.... .+|||+|||+|++| ||.++|.||.||+||+ +|++|+|.|||+++
T Consensus       305 --------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l  373 (458)
T PRK09029        305 --------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVI  373 (458)
T ss_pred             --------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCHHHHHHHH
Confidence                    8999999999999999998887554 68999999999999 9999999999999997 89999999999999


Q ss_pred             hcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCccee
Q 005406          566 AKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYA  642 (698)
Q Consensus       566 ~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p  642 (698)
                      .++|+|.+++|++.++   ++.++|+|+++...                           ..++|+++++ .+|+.|++|
T Consensus       374 ~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~---------------------------~~~~l~~~~~-~~l~~~~~P  425 (458)
T PRK09029        374 NQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA---------------------------AVVNLAEWLQ-DKLARFQQP  425 (458)
T ss_pred             hcCCCcceEEEEccCCcccCceEEEEEEcCccc---------------------------CHHHHHHHHH-hhchhccCC
Confidence            9999999999999654   46789998876311                           1456677775 789999999


Q ss_pred             eEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          643 KAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       643 ~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      ..+++++++|      +|.+||++|+.|++++++.
T Consensus       426 ~~~~~~~~~p------~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        426 VAYYLLPPEL------KNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             eEEEEecccc------cCcCCCcCHHHHHHHHHhc
Confidence            9999999999      9999999999999888753

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-61  Score=539.80  Aligned_cols=502  Identities=21%  Similarity=0.236  Sum_probs=399.6

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .|+.++|++.++++|+++|+.+.         .+.+||.||.++++++|++|.+.|+++|++|+|+++|+++|+++++||
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~---------~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~   73 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG---------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA   73 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC---------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            37899999999999999999763         246999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|+++.++.+++.++++++++++++++......+.+....++..+.++.+++......      ....+++++
T Consensus        74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  147 (533)
T PRK07798         74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDL------LPGAVDYED  147 (533)
T ss_pred             HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccccc------CCccccHHH
Confidence            99999999999999999999999999999999998777777666666677777777665332110      012356777


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---------ccc------CCCcEEEEc
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---------VQF------YPSDIYMSY  303 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~  303 (698)
                      ++...... ..... ..++.++|+|||||||.||||+++|+++...+......         ..+      ..+++++..
T Consensus       148 ~~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            76543321 11112 23445789999999999999999999987654432111         111      567899999


Q ss_pred             CChhhHHHHHHHHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHH-HHHHHHHhhcchHHHHHHHHH
Q 005406          304 LPLAHIYERANQIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIY-AGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       304 ~pl~h~~~~~~~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      +|++|.+++...+.+++.|+++++.+   .++..+++.++++++|.+.++|..+...+ ..+. .               
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------  289 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------  289 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence            99999999998899999999999987   58999999999999999999998765432 2110 0               


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG  458 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~  458 (698)
                                               .......++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+.......
T Consensus       290 -------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  344 (533)
T PRK07798        290 -------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK  344 (533)
T ss_pred             -------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC
Confidence                                     0001125899999999999999999999887 78999999999997654433221


Q ss_pred             CCCCCCcc--CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc---CCCceecCcEEEEe
Q 005406          459 DNLSGHVG--SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWL  533 (698)
Q Consensus       459 ~~~~~~vG--~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~---~~gw~~TGDlg~~~  533 (698)
                      .  ....|  .+.++..++|+| +++...+.+.++ .|+|+ +++.++.|||++++.|++.|.   +++||+|||+|++|
T Consensus       345 ~--~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~  419 (533)
T PRK07798        345 G--AVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVE  419 (533)
T ss_pred             C--CccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEc
Confidence            1  12344  788999999999 455555555411 26665 566899999999999998883   34699999999999


Q ss_pred             cCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccH
Q 005406          534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       534 ~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~  610 (698)
                      ++|.+++.||.||+||. +|++|+|.+||+++.++|.|.+++|++.++   ++.+++++++.++.        ..     
T Consensus       420 ~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~-----  485 (533)
T PRK07798        420 ADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGA--------RP-----  485 (533)
T ss_pred             CCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCC--------CC-----
Confidence            99999999999999996 899999999999999999999999998543   46788888877531        00     


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                                  ..++|.+.++ ..|+.|++|..+++++++|      +|++||++|+.|+++.++
T Consensus       486 ------------~~~~l~~~l~-~~l~~~~~P~~i~~~~~iP------~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        486 ------------DLAELRAHCR-SSLAGYKVPRAIWFVDEVQ------RSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             ------------CHHHHHHHHh-hhcccCCCCeEEEEcccCC------CCCcchhhHHHHhhhhcc
Confidence                        1345555654 6799999999999999999      999999999999998754

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-61  Score=541.39  Aligned_cols=506  Identities=23%  Similarity=0.277  Sum_probs=391.3

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.+.|++.++++|+++|+...   +      ..+||+||.+++.++|.+|.+.|+++|++|+|+++|+++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999653   2      45999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHH
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (698)
                      +++|++++|++++++.+++.+++++++++.++++.+....+.+.....+..+.++ ++......   .....+...++.+
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~  164 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV-IDVDDPEY---PGGRFIGALDYEA  164 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEE-EecCcccc---ccCCCcccccHHH
Confidence            9999999999999999999999999999999999887766655444444332222 22111100   0011123345666


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (698)
                      +............+.+.+++++|+|||||||.||||+++|+++..........+.+..++++++.+|++|.+++...+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~  244 (545)
T PRK08162        165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV  244 (545)
T ss_pred             HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence            65443221111122345689999999999999999999999987666555555677888999999999999998775544


Q ss_pred             HHhCcEE-EEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          319 VYYGVAV-GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       319 l~~G~~~-~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      .+.|++. .+...++..+++.++++++|++.++|+++..|.+.....                                 
T Consensus       245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------  291 (545)
T PRK08162        245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW---------------------------------  291 (545)
T ss_pred             HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence            4445444 444479999999999999999999999999887521100                                 


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CCCCCcc
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLSGHVG  466 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG  466 (698)
                              +..+ .+.+.+++||+++++++.+.++. +++++++.||+||+++.++.+....           ...+++|
T Consensus       292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (545)
T PRK08162        292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG  361 (545)
T ss_pred             --------ccCC-ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence                    0000 24556688999999999998876 5999999999999865444332110           1134567


Q ss_pred             CCCC-CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCC
Q 005406          467 SPNP-ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       467 ~p~~-~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      .+.+ +.+++|+|++++..++.+. ...|||+++|+.++.|||++++.|...| .+|||+|||+|++|++|.++|+||.|
T Consensus       362 ~~~~~~~~~~i~d~~~~~~~~~~g-~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~  439 (545)
T PRK08162        362 VRYPLQEGVTVLDPDTMQPVPADG-ETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSK  439 (545)
T ss_pred             cccCCcceEEEEcCCCCcccCCCC-CceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEeccc
Confidence            7665 3468888865555554321 0269999999999999999999999999 68999999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      |+||+ +|++|+|.+||+++.++|+|.+++|++.+.   ++.++++|++.++.        ..                 
T Consensus       440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~--------~~-----------------  493 (545)
T PRK08162        440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGA--------SA-----------------  493 (545)
T ss_pred             ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCC--------CC-----------------
Confidence            99996 899999999999999999999999998543   46788898877531        00                 


Q ss_pred             HHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      ..++|+++++ ..|+.|++|..+++ .++|      +|++||++|+.|++.+.+
T Consensus       494 ~~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        494 TEEEIIAHCR-EHLAGFKVPKAVVF-GELP------KTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             CHHHHHHHHH-HhcccccCCcEEEe-cccC------CCCCcCCcHHHHHHHHhh
Confidence            1345666665 67899999999875 6799      999999999999887654

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-61  Score=573.18  Aligned_cols=536  Identities=16%  Similarity=0.206  Sum_probs=392.2

Q ss_pred             hHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHH
Q 005406            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (698)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (698)
                      ++++--..+-+.+++.+|.++++++....+...           +        ..-|..        .. ..+...|+.+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--------~~~~~~--------~~-~~~~~~sl~~  451 (994)
T PRK07868        400 AEAALALARGAADAAVAANRSVRTLAVETARTL-----------P--------RLARLG--------QI-NDHTRISLGR  451 (994)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhh-----------h--------hHHHhh--------hc-CCCCCccHHH
Confidence            344555677788888999988888876643320           0        000000        01 1234568999


Q ss_pred             HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        84 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      +|++.++++||++|+.+.   +      +.+||+||+++++++|++|++.|+++|++|+|+++|+++|+++++||+++|+
T Consensus       452 ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGa  522 (994)
T PRK07868        452 IIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGA  522 (994)
T ss_pred             HHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Confidence            999999999999999753   2      4599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcC
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (698)
                      +++|++|.   +++.+++++++++++|++.+....+...      ...+++++..........  .......++++....
T Consensus       523 v~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~~--~~~~~~~~~~~~~~~  591 (994)
T PRK07868        523 VAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDLP--DDADVIDMEKIDPDA  591 (994)
T ss_pred             EEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccCC--cchhhhhhhhcCccc
Confidence            99999985   6899999999999999987665544321      133455443211000000  000011122111110


Q ss_pred             CCCC--CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH-HH
Q 005406          244 CSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS-VY  320 (698)
Q Consensus       244 ~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~-l~  320 (698)
                      ...+  ....+..++++++|+|| ||||.||++.++|.++..........+++.++|++++.+|++|++++...+.+ +.
T Consensus       592 ~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~  670 (994)
T PRK07868        592 VELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVV  670 (994)
T ss_pred             ccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhc
Confidence            0000  01112246899999999 58888888888887765544444455778899999999999999999876554 55


Q ss_pred             hCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          321 YGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      .|+++++.+ +++..+++.|+++++|+++++|+++..+.+....                               ...  
T Consensus       671 gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~-------------------------------~~~--  717 (994)
T PRK07868        671 GGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF-------------------------------VLH--  717 (994)
T ss_pred             cceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC-------------------------------ccC--
Confidence            555565554 7999999999999999999999999888652000                               000  


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC-CceecccCcchhcchhcccCCCCCCCCCccCCCCCc-EEEEE
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC-EIKLV  477 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~  477 (698)
                               ..+++|.++ | +.+++++.+.+.+.++ ++++++||+||++.....  ......+++|+|+|++ +++|.
T Consensus       718 ---------~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~pg~~~v~i~  784 (994)
T PRK07868        718 ---------GNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLPGAGRVELA  784 (994)
T ss_pred             ---------CCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccCCCCceeEE
Confidence                     014788776 3 3499999999998886 889999999998764432  2234568999999998 77775


Q ss_pred             ec---------CCCCCCCCCCCCCccEEEEeCCCccccccCChhhhc--cccc-CCCceecCcEEEEecCCcEEEEccCC
Q 005406          478 DV---------PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTR--EVID-GDGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       478 d~---------~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~--~~f~-~~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      +.         ++.++....++++.|||+++|+..    + +|+.+.  ..|. ++|||+|||+|++|+||+|+|+||+|
T Consensus       785 ~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~d  859 (994)
T PRK07868        785 AYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRG  859 (994)
T ss_pred             EecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCC
Confidence            21         111211222345689999999863    3 455442  3353 58999999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      |+||+ +|++|+|.|||++|.+||.|.+|+|++.++  .+.++|+|++.++.        .++                 
T Consensus       860 d~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~--------~~~-----------------  913 (994)
T PRK07868        860 SVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA--------AIT-----------------  913 (994)
T ss_pred             CEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC--------cCC-----------------
Confidence            99997 788999999999999999999999999654  46789999987632        011                 


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                      .++|+++++ . |+.|++|+.|++++++|      +|++||++|++|++.
T Consensus       914 ~~~L~~~l~-~-l~~y~vP~~i~~v~~lP------~T~sGKi~r~~L~~~  955 (994)
T PRK07868        914 AADLTEALA-S-LPVGLGPDIVHVVPEIP------LSATYRPTVSALRAA  955 (994)
T ss_pred             HHHHHHHHH-h-CCCCcCCeEEEEeCCCC------CCccccEehHHHHhc
Confidence            356777775 3 89999999999999999      999999999999765

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.9e-61  Score=536.99  Aligned_cols=459  Identities=15%  Similarity=0.143  Sum_probs=339.1

Q ss_pred             cCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc------hHHHHhhhhcCCceeEEEEeCCC
Q 005406          145 LINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT------LNTLLSFISEIPSVHLIVVVGGK  218 (698)
Q Consensus       145 ~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~ii~~~~~  218 (698)
                      ++|++|+++++|||+++|++++|+|+.++.+++.+++++++++++|++...      ...+.+.....+ .+.+++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      122222221112 2333332211


Q ss_pred             CCCCCCCCCCCCceEeeHHHHHhcCCC------CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccc
Q 005406          219 DEHLPSLPSTSGVKLISYLQLQSQGCS------SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV  292 (698)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  292 (698)
                      ....  ..  ......+|+++...+..      .........++++++|+|||||||.||||++||++++.........+
T Consensus        80 ~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  155 (499)
T PLN03051         80 EPVA--VP--LREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM  155 (499)
T ss_pred             cccC--Cc--cccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence            1000  00  00012356666532211      01111123568999999999999999999999999887665555557


Q ss_pred             ccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcch
Q 005406          293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT  370 (698)
Q Consensus       293 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  370 (698)
                      +++++|++++.+|++|.+++...+.+++.|+++++.+  .++..+++.|+++++|++.++|+++..|.+......     
T Consensus       156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~-----  230 (499)
T PLN03051        156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM-----  230 (499)
T ss_pred             CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc-----
Confidence            7889999999999999999877788899999999886  478899999999999999999999988865210000     


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh--CCceecccCcchh
Q 005406          371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTET  448 (698)
Q Consensus       371 ~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~l~~~YG~TE~  448 (698)
                                                         .....++||.+++||+++++++.+++++.+  +++++++||+||+
T Consensus       231 -----------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  275 (499)
T PLN03051        231 -----------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL  275 (499)
T ss_pred             -----------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence                                               000014899999999999999998877633  4789999999998


Q ss_pred             cchhcccCC-CCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCc--cccccCChhhhcccccC-----
Q 005406          449 SCIISAIDK-GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIV--FQGYYKNEVQTREVIDG-----  520 (698)
Q Consensus       449 ~~~~~~~~~-~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~--~~GY~~~~~~t~~~f~~-----  520 (698)
                      +..++.... .....+++|+|.++++++|+| ++++.++.++ +..|||+++||.+  +.|||+++ .++..+++     
T Consensus       276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~-~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~  352 (499)
T PLN03051        276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQ-PCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG  352 (499)
T ss_pred             cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCC-CcceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence            754332222 223567899999999999999 5556555542 1379999999976  58999865 34433322     


Q ss_pred             ---CCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhc-CcCceeEEEEEcCC---C-CeEEEEE---
Q 005406          521 ---DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK-CKFVLQCFIYGDSF---N-SCLVAIV---  589 (698)
Q Consensus       521 ---~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~-~p~V~~~~V~g~~~---~-~~~va~v---  589 (698)
                         .+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|.+|+|+|.++   + +.++|+|   
T Consensus       353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~  431 (499)
T PLN03051        353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG  431 (499)
T ss_pred             cCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence               127899999999999999999999999996 8999999999999986 99999999998654   3 4688888   


Q ss_pred             EcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHH
Q 005406          590 AVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQ  669 (698)
Q Consensus       590 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~  669 (698)
                      +++++..       ..         ..    +.+.+.+++.++ .+|+.+++|..|++++++|      +|++||++|++
T Consensus       432 v~~~~~~-------~~---------~~----~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~lP------~t~~GKi~r~~  484 (499)
T PLN03051        432 EEKKGFD-------QA---------RP----EALQKKFQEAIQ-TNLNPLFKVSRVKIVPELP------RNASNKLLRRV  484 (499)
T ss_pred             eeccccc-------cc---------ch----HHHHHHHHHHHH-hhcCCccCCceEEEcCCCC------CCCCccHHHHH
Confidence            6654210       00         11    233444555543 5688877777899999999      99999999999


Q ss_pred             HHHHHHHHHH
Q 005406          670 AKERFAKAIS  679 (698)
Q Consensus       670 l~~~~~~~i~  679 (698)
                      |++.+.+.+.
T Consensus       485 L~~~~~~~~~  494 (499)
T PLN03051        485 LRDQLKKELS  494 (499)
T ss_pred             HHHHHHHhhc
Confidence            9987766543

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-61  Score=544.85  Aligned_cols=504  Identities=19%  Similarity=0.222  Sum_probs=369.8

Q ss_pred             CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      ++.++|++++..+|+++|+.+........+..+.+||+||.+++.++|++|.+.| .+||+|+|+++|+++|++++|||+
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~   80 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL   80 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence            6789999999999999999865110011123578999999999999999999999 689999999999999999999999


Q ss_pred             hcCCeEEecCC---CCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCC--ceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          160 AYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP--SVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       160 ~~G~~~vpl~~---~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      ++|++++|+++   .++.+++.++++++++++++++.+....+........  ....++.++..                
T Consensus        81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  144 (578)
T PRK05850         81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL----------------  144 (578)
T ss_pred             HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence            99999999997   5578999999999999999999876665544322111  11112221110                


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc-cc-----cCCCcEEEEcCChhh
Q 005406          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQ-----FYPSDIYMSYLPLAH  308 (698)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~~pl~h  308 (698)
                         ++..   ..........++++++|+|||||||.||||+++|+++++.+...... +.     ...++++++++|++|
T Consensus       145 ---~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  218 (578)
T PRK05850        145 ---DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH  218 (578)
T ss_pred             ---cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence               0000   00011123467899999999999999999999999998876554332 22     356889999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHH-HHHHHhhcchHHHHHHHHHHH
Q 005406          309 IYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG-ITNAVKASGTLREKLFTAAYN  381 (698)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~  381 (698)
                      .+++.. .+.+++.|+++++.+     .++..+++.+.+++++++ .+|..+..+... ....                 
T Consensus       219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~-----------------  280 (578)
T PRK05850        219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD-----------------  280 (578)
T ss_pred             CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence            999876 778899999999886     278999999999999855 566654333221 0000                 


Q ss_pred             HHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhccc
Q 005406          382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAI  455 (698)
Q Consensus       382 ~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~~~  455 (698)
                                            .......+++|.+++||+++++++.+.|.+.++      ..+++.||+||++..+...
T Consensus       281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  338 (578)
T PRK05850        281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR  338 (578)
T ss_pred             ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence                                  000000147999999999999999999888763      3689999999987654432


Q ss_pred             CCCCC-------------------------CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCC
Q 005406          456 DKGDN-------------------------LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN  510 (698)
Q Consensus       456 ~~~~~-------------------------~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~  510 (698)
                      .....                         ....+|.|. +.+++++|.+++..++.++   .|||+++|++++.|||++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~  414 (578)
T PRK05850        339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK  414 (578)
T ss_pred             CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence            21100                         012345554 5899999966666666554   899999999999999999


Q ss_pred             hhhhccccc-----------CCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEc
Q 005406          511 EVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD  579 (698)
Q Consensus       511 ~~~t~~~f~-----------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~  579 (698)
                      |+.|++.|.           .+|||+|||+|+++ +|+|+|+||+||+||+ +|++|+|.|||+++.+||.+. ++|++.
T Consensus       415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v  491 (578)
T PRK05850        415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISV  491 (578)
T ss_pred             hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEe
Confidence            999999884           25799999999998 9999999999999997 899999999999999999965 667664


Q ss_pred             CC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCC
Q 005406          580 SF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVE  655 (698)
Q Consensus       580 ~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~  655 (698)
                      ++  ++.++|+|++.+...        .+   .    ........+.+++.+.++.   .....|..+.+++  ++|   
T Consensus       492 ~~~~~~~~~a~v~~~~~~~--------~~---~----~~~~~~~~l~~~v~~~l~~---~~~~~~~~~~~~~~~~iP---  550 (578)
T PRK05850        492 PDDGTEKLVAIIELKKRGD--------SD---E----EAMDRLRTVKREVTSAISK---SHGLSVADLVLVAPGSIP---  550 (578)
T ss_pred             cCCCceEEEEEEEeccccC--------cc---h----hhhhhHHHHHHHHHHHHHH---HhCCCceEEEEeCCCCcC---
Confidence            43  467899998775320        00   0    0001123344444443321   1112466666765  789   


Q ss_pred             CCccCcccCCChHHHHHHHHHH
Q 005406          656 NGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       656 ~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                         +|++||++|+++++.|++.
T Consensus       551 ---~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        551 ---ITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             ---CCCCchHHHHHHHHHHHcC
Confidence               9999999999999998653

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-60  Score=532.34  Aligned_cols=478  Identities=22%  Similarity=0.274  Sum_probs=388.2

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEe
Q 005406          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC  191 (698)
Q Consensus       112 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~  191 (698)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHhhhhcCC-ceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 005406          192 IPQTLNTLLSFISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGT  270 (698)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  270 (698)
                      +......+.+..+..+ ..+.+++.+...           .....|++.......    ......++.++++|||||||.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCCC
Confidence            9877666655544444 455555543211           112345555432211    112355778999999999999


Q ss_pred             cceeeechHHHHHHH------HhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhc
Q 005406          271 PKGAVLTHGNLISNV------AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLK  343 (698)
Q Consensus       271 PKgV~~th~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~  343 (698)
                      ||||+++|.++....      ...........++++++++|++|.+++...+.++..|+++++.+ +++..+++.+++++
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  234 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR  234 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence            999999987754322      11122222357889999999999999988888999999998887 78999999999999


Q ss_pred             CcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCC
Q 005406          344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL  423 (698)
Q Consensus       344 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l  423 (698)
                      +|++.++|+++..+.+......                             ..+|           .+++|.+++||+++
T Consensus       235 ~t~~~~~P~~~~~l~~~~~~~~-----------------------------~~~~-----------~~~lr~i~~~g~~~  274 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLPEEVR-----------------------------ARYD-----------VSSLRVAIHAAAPC  274 (502)
T ss_pred             CeEEEehHHHHHHHHhCccccC-----------------------------CCCC-----------cccceEEEecCCCC
Confidence            9999999999988865210000                             0011           15899999999999


Q ss_pred             CHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCC
Q 005406          424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPI  502 (698)
Q Consensus       424 ~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~  502 (698)
                      +.++.+++.+.+|..+++.||+||++.+++..... ....+++|.|+ +++++++| +++..++.++   .|||+++|+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~  349 (502)
T PRK08276        275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG  349 (502)
T ss_pred             CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence            99999999998899999999999998765544322 24567899999 88999998 5566666554   8999999999


Q ss_pred             ccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC-
Q 005406          503 VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF-  581 (698)
Q Consensus       503 ~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~-  581 (698)
                      ++.||+++++.+.+.|..+|||+|||+|+++++|.+++.||.||+||+ +|++|+|.+||.++.++|+|.+++|++..+ 
T Consensus       350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~  428 (502)
T PRK08276        350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDE  428 (502)
T ss_pred             ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCc
Confidence            999999999999999977899999999999999999999999999996 899999999999999999999999998654 


Q ss_pred             --CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCcc
Q 005406          582 --NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLL  659 (698)
Q Consensus       582 --~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~  659 (698)
                        ++.++++|++.....                  .+++    ..+++.+.++ .+|+.+++|+.+++++++|      +
T Consensus       429 ~~~~~~~~~v~~~~~~~------------------~~~~----~~~~i~~~~~-~~l~~~~~p~~i~~~~~lP------~  479 (502)
T PRK08276        429 EMGERVKAVVQPADGAD------------------AGDA----LAAELIAWLR-GRLAHYKCPRSIDFEDELP------R  479 (502)
T ss_pred             ccCceEEEEEEECCCCC------------------CChh----hHHHHHHHHH-hhccCCCCCcEEEEecCCC------C
Confidence              468999999875320                  0111    2344555554 6899999999999999999      9


Q ss_pred             CcccCCChHHHHHHHHHHHH
Q 005406          660 TPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       660 T~~GKi~R~~l~~~~~~~i~  679 (698)
                      |++||++|++|++.|...-+
T Consensus       480 t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        480 TPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CcccchhHHHHHHHHHhhhh
Confidence            99999999999999876543

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-61  Score=513.66  Aligned_cols=505  Identities=20%  Similarity=0.274  Sum_probs=409.2

Q ss_pred             HHHHHHHHh-CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhc
Q 005406           83 DNFIYAVEN-YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAY  161 (698)
Q Consensus        83 ~~l~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~  161 (698)
                      ..+.++.+. .++.++++++   ....++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++++++||.++
T Consensus        68 n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~  144 (626)
T KOG1175|consen   68 NCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARI  144 (626)
T ss_pred             hhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhc
Confidence            334444443 4888998886   333333444999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEecCCCCCHHHHHHHHhhccceEEEecccchH---------HHHhhhhcCCc-----eeEEEEeCCCCCCCCCCCC
Q 005406          162 SYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN---------TLLSFISEIPS-----VHLIVVVGGKDEHLPSLPS  227 (698)
Q Consensus       162 G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~---------~~~~~~~~~~~-----~~~ii~~~~~~~~~~~~~~  227 (698)
                      |++.+++...+++.++...+++++++++++.+....         .+.+++..++.     ...+++....         
T Consensus       145 Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  215 (626)
T KOG1175|consen  145 GAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN---------  215 (626)
T ss_pred             CeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc---------
Confidence            999999999999999999999999999999764321         22222222211     1111111110         


Q ss_pred             CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHH-HHHHHHhcccccccCCCcEEEEcCCh
Q 005406          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGN-LISNVAGFSLMVQFYPSDIYMSYLPL  306 (698)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~pl  306 (698)
                          +...|++++..... ..+....+.+|+.+|+|||||||.||||.+++.. ++..+......++++++|+++++..+
T Consensus       216 ----~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~  290 (626)
T KOG1175|consen  216 ----RDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDL  290 (626)
T ss_pred             ----ccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEeccc
Confidence                12456666554433 2336667889999999999999999999999876 55556666667899999999999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS  382 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  382 (698)
                      .|+.+... .+.+|+.|++++++.   +++..+++.+.++++|++++.|++++.+.........                
T Consensus       291 GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~----------------  354 (626)
T KOG1175|consen  291 GWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT----------------  354 (626)
T ss_pred             CeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc----------------
Confidence            99999888 566999999999987   4889999999999999999999999987663221111                


Q ss_pred             HHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCC--
Q 005406          383 KKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD--  459 (698)
Q Consensus       383 k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~--  459 (698)
                                   .++          + ++||.+.++|||++++..+++.+.++. +|++.||+||+|+.+....+..  
T Consensus       355 -------------~~~----------~-~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p  410 (626)
T KOG1175|consen  355 -------------SYS----------L-KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLP  410 (626)
T ss_pred             -------------ccc----------c-ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCC
Confidence                         011          0 379999999999999999999999987 6999999999999888777766  


Q ss_pred             CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--C-CccccccCChhhhccc-c-cCCCceecCcEEEEec
Q 005406          460 NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--P-IVFQGYYKNEVQTREV-I-DGDGWLHTGDIGLWLP  534 (698)
Q Consensus       460 ~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~-~~~~GY~~~~~~t~~~-f-~~~gw~~TGDlg~~~~  534 (698)
                      ..+++.|.|.+++.+.|+|. +++..+...  ..|||+++.  | +.+++||+|++.-... | ...|+|.|||.|++|+
T Consensus       411 ~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~  487 (626)
T KOG1175|consen  411 IKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDE  487 (626)
T ss_pred             cCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcC
Confidence            78899999999999999995 555554432  389999997  3 7899999999943333 2 2389999999999999


Q ss_pred             CCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHH
Q 005406          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLE  611 (698)
Q Consensus       535 ~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~  611 (698)
                      ||++++.||.||+|++ +|+++.+.|||+++..||.|.|++|+|.++   ++.++|||++.++.                
T Consensus       488 dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~----------------  550 (626)
T KOG1175|consen  488 DGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS----------------  550 (626)
T ss_pred             CceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC----------------
Confidence            9999999999999997 799999999999999999999999999664   58999999999852                


Q ss_pred             HhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          612 QLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       612 ~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                            ...+.+.++|+...| ..+.+|..|+.|++++++|      +|.+||+.|+.|++....+
T Consensus       551 ------~~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~LP------kTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  551 ------HDPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGLP------KTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             ------CChHHHHHHHHHHHH-hhcCcccccceeEecCCCC------ccccchhHHHHHHHHhccC
Confidence                  112345666666665 7899999999999999999      9999999999999988655

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.6e-60  Score=528.56  Aligned_cols=480  Identities=21%  Similarity=0.266  Sum_probs=380.5

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEe
Q 005406          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC  191 (698)
Q Consensus       112 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~  191 (698)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHhhhhcCCceeEEEEeCCCCCCC-----CCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCC
Q 005406          192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-----PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSG  266 (698)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  266 (698)
                      +......+.+...   ....++.........     .............++++.....    +.....++++++++||||
T Consensus        90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence            8776655433221   111122221110000     0000001112245665543221    122345789999999999


Q ss_pred             CCCCcceeeechHHH---HHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhh
Q 005406          267 TTGTPKGAVLTHGNL---ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVL  342 (698)
Q Consensus       267 TTG~PKgV~~th~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~  342 (698)
                      |||.||+|+++|.+.   ..........+++.+++++++.+|++|..+....+.++..|+++++.+ .++..+++.++++
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~  242 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH  242 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence            999999999876553   333333444577889999999999999998887777888999998877 6899999999999


Q ss_pred             cCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCC
Q 005406          343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP  422 (698)
Q Consensus       343 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~  422 (698)
                      ++|.+.++|+++..+........                                        +....+++|.+++||++
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------~~~~~~~l~~v~~gg~~  282 (509)
T PRK12406        243 RITHMHMVPTMFIRLLKLPEEVR----------------------------------------AKYDVSSLRHVIHAAAP  282 (509)
T ss_pred             CCeEEEccHHHHHHHHhCchhhc----------------------------------------ccCCCCceeEEEEcCCC
Confidence            99999999999988865211000                                        00001589999999999


Q ss_pred             CCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCC
Q 005406          423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP  501 (698)
Q Consensus       423 l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~  501 (698)
                      +++++.+++.+.+++.+++.||+||++.+++..... ...++++|.|+++++++++| +++...+.+.   .|||+++|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~  358 (509)
T PRK12406        283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA  358 (509)
T ss_pred             CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence            999999999998899999999999998765543322 24567899999999999999 5555555554   899999999


Q ss_pred             Cccc-cccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC
Q 005406          502 IVFQ-GYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS  580 (698)
Q Consensus       502 ~~~~-GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~  580 (698)
                      +++. ||+++++.+...+ .+|||+|||+|++|++|.+++.||.||+||+ +|++|+|.+||+++.++|+|.+++|++.+
T Consensus       359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~  436 (509)
T PRK12406        359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIP  436 (509)
T ss_pred             ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeee
Confidence            9875 9999999888776 7999999999999999999999999999996 89999999999999999999999999865


Q ss_pred             C---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCC
Q 005406          581 F---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENG  657 (698)
Q Consensus       581 ~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~  657 (698)
                      +   ++.++++|++++..        +.+                 .++|++.++ ..|+.|++|..+++++++|     
T Consensus       437 ~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~~~~iP-----  485 (509)
T PRK12406        437 DAEFGEALMAVVEPQPGA--------TLD-----------------EADIRAQLK-ARLAGYKVPKHIEIMAELP-----  485 (509)
T ss_pred             ccccCceeEEEEEECCCC--------CCC-----------------HHHHHHHHH-HhcccCCCCcEEEEeccCC-----
Confidence            4   35688888876531        000                 244555554 6789999999999999999     


Q ss_pred             ccCcccCCChHHHHHHHHH
Q 005406          658 LLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       658 ~~T~~GKi~R~~l~~~~~~  676 (698)
                       +|++||++|++|++.|..
T Consensus       486 -~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        486 -REDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             -CCCccchhHHHHHHHHHh
Confidence             999999999999987754

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.3e-59  Score=510.66  Aligned_cols=432  Identities=22%  Similarity=0.278  Sum_probs=358.1

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc
Q 005406          115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ  194 (698)
Q Consensus       115 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~  194 (698)
                      ||+||.++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             chHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCccee
Q 005406          195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGA  274 (698)
Q Consensus       195 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV  274 (698)
                      .....             +                  ....+.++................+++++++|||||||.||+|
T Consensus        81 ~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v  129 (436)
T TIGR01923        81 LEEKD-------------F------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV  129 (436)
T ss_pred             ccccc-------------e------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence            32100             0                  0011111111111111112234578999999999999999999


Q ss_pred             eechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhhHHHHHhhhcCcEEeechHHH
Q 005406          275 VLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY  354 (698)
Q Consensus       275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~  354 (698)
                      +++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.++|+++
T Consensus       130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l  208 (436)
T TIGR01923       130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL  208 (436)
T ss_pred             EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence            999999999888888888999999999999999999998888899999999987643 3899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH
Q 005406          355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC  434 (698)
Q Consensus       355 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~  434 (698)
                      ..+.+...                                              ...++|.+++||+++++++.++++. 
T Consensus       209 ~~l~~~~~----------------------------------------------~~~~l~~~~~~G~~~~~~~~~~~~~-  241 (436)
T TIGR01923       209 NRLLDEGG----------------------------------------------HNENLRKILLGGSAIPAPLIEEAQQ-  241 (436)
T ss_pred             HHHHhCcC----------------------------------------------CCCceEEEEECCCCCCHHHHHHHHH-
Confidence            88765210                                              0037999999999999999998876 


Q ss_pred             hCCceecccCcchhcchhcccCCCC-CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhh
Q 005406          435 FGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ  513 (698)
Q Consensus       435 ~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~  513 (698)
                      .|+.+++.||+||++..++...... ....++|.|++++++++.+.+..         ..|||+++|+.++.||+++++.
T Consensus       242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~---------~~Gel~v~~~~~~~gy~~~~~~  312 (436)
T TIGR01923       242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKE---------GHGEIMVKGANLMKGYLYQGEL  312 (436)
T ss_pred             hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCC---------CceEEEEECCccchhhCCChhh
Confidence            5999999999999987655443322 22235999999999999542221         3799999999999999999888


Q ss_pred             hcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEE
Q 005406          514 TREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVA  590 (698)
Q Consensus       514 t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv  590 (698)
                      +...+ .+|||+|||+|++++||.+++.||.||+||+ +|++|+|.+||.++.++|.|.+++|++.+.   +..++++|+
T Consensus       313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  390 (436)
T TIGR01923       313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV  390 (436)
T ss_pred             hhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEE
Confidence            87766 6899999999999999999999999999997 899999999999999999999999998654   356788888


Q ss_pred             cChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHH
Q 005406          591 VDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQA  670 (698)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l  670 (698)
                      ++++.          +                 .+++.++++ ..|+.|++|..|++++++|      +|++||++|++|
T Consensus       391 ~~~~~----------~-----------------~~~l~~~l~-~~l~~~~~p~~i~~~~~iP------~t~~GK~~r~~L  436 (436)
T TIGR01923       391 SESDI----------S-----------------QAKLIAYLT-EKLAKYKVPIAFEKLDELP------YNASGKILRNQL  436 (436)
T ss_pred             ECCCC----------C-----------------HHHHHHHHH-HhhhCCCCCeEEEEecCCC------CCCCCceecccC
Confidence            76521          1                 234444553 6789999999999999999      999999999875

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-58  Score=519.87  Aligned_cols=490  Identities=22%  Similarity=0.291  Sum_probs=372.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .++.+.|...+...|+.+++...   ++    .+.+||.||+++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~   74 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL   74 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            46788888999999999988654   33    367999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHH-------HHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          159 SAYSYISVPLYDTLGPDAV-------KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l-------~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      +++|++++|+++..+.+++       .++++.++++.+++++.....+.... .                       .+.
T Consensus        75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~  130 (545)
T PRK07768         75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI  130 (545)
T ss_pred             HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence            9999999999998876544       55678889999999765433221110 0                       012


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCC-cEEEEcCChhhHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS-DIYMSYLPLAHIY  310 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~  310 (698)
                      .++.++++.....   .......++++++|+|||||||.||||+++|+++...+......+++.++ |++++.+|++|.+
T Consensus       131 ~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  207 (545)
T PRK07768        131 RVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM  207 (545)
T ss_pred             ceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence            2345556554221   12234567999999999999999999999999999988877777777776 8999999999999


Q ss_pred             HHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          311 ERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       311 ~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      ++.. .+.++..|+++++.+     .++..+.+.+++++++++.++|.++..+...+......                 
T Consensus       208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------  270 (545)
T PRK07768        208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP-----------------  270 (545)
T ss_pred             HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence            9886 556799999998876     27788899999999999988887776665422110000                 


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH---hCC---ceecccCcchhcchhcccCCC
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC---FGC---QVMEGYGMTETSCIISAIDKG  458 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~g~---~l~~~YG~TE~~~~~~~~~~~  458 (698)
                                ..++           .+++|.+++||+++++.+.+.+.+.   +|.   .+++.||+||++..++.....
T Consensus       271 ----------~~~~-----------~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~  329 (545)
T PRK07768        271 ----------GAFD-----------LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG  329 (545)
T ss_pred             ----------cCCC-----------chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence                      0001           1489999999999999999988764   555   499999999998755433221


Q ss_pred             --------------------------CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChh
Q 005406          459 --------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV  512 (698)
Q Consensus       459 --------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~  512 (698)
                                                ....+++|+|+++++++|+| +++...+.++   .|||+++|+.++.||++++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~  405 (545)
T PRK07768        330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG  405 (545)
T ss_pred             CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence                                      11346899999999999999 6666665554   89999999999999998655


Q ss_pred             hhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC--C---CCeEEE
Q 005406          513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--F---NSCLVA  587 (698)
Q Consensus       513 ~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~---~~~~va  587 (698)
                      ... .++.+|||+|||+|+++++|.++++||.||+||+ +|++|+|.+||+.+.++|+|.+++|++..  +   ++.++.
T Consensus       406 ~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~  483 (545)
T PRK07768        406 FIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAV  483 (545)
T ss_pred             Ccc-cccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEE
Confidence            443 4447899999999999999999999999999998 79999999999999999999998777532  1   223444


Q ss_pred             EEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCCCCccCcccCC
Q 005406          588 IVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKI  665 (698)
Q Consensus       588 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi  665 (698)
                      ++.+....                    +......+.+.+++.+. ..+.  .+|..+.+++  ++|      +|++||+
T Consensus       484 ~v~~~~~~--------------------~~~~~~~l~~~~~~~l~-~~~~--~~p~~v~~v~~~~lP------~t~~GKi  534 (545)
T PRK07768        484 AVESNAFE--------------------DPAEVRRIRHQVAHEVV-AEVG--VRPRNVVVLGPGSIP------KTPSGKL  534 (545)
T ss_pred             EEEecccc--------------------cHHHHHHHHHHHHHHHH-HHhC--CCccEEEEeCCCcCC------CCCchhH
Confidence            44433211                    11111122333333221 1111  4677888886  799      9999999


Q ss_pred             ChHHHHHHHH
Q 005406          666 KRPQAKERFA  675 (698)
Q Consensus       666 ~R~~l~~~~~  675 (698)
                      +|+.+++.|.
T Consensus       535 ~r~~l~~~~~  544 (545)
T PRK07768        535 RRANAAELVT  544 (545)
T ss_pred             HHHHHHHhcC
Confidence            9999998874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-57  Score=488.97  Aligned_cols=396  Identities=15%  Similarity=0.167  Sum_probs=336.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEe
Q 005406          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC  191 (698)
Q Consensus       112 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~  191 (698)
                      +.+||+||.++++++|+.|. .|+++|++|+|+++|+++|+++++||+++|++++|+++..+.+++..++++++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            46999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCc
Q 005406          192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTP  271 (698)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P  271 (698)
                      +.....                .                   .              ......++++++|+|||||||.|
T Consensus        86 ~~~~~~----------------~-------------------~--------------~~~~~~~~~~~~i~~TSGtTG~P  116 (414)
T PRK08308         86 GESDFT----------------K-------------------L--------------EAVNYLAEEPSLLQYSSGTTGEP  116 (414)
T ss_pred             cCcccc----------------c-------------------c--------------cCCCCCCCCceEEEECCCCCCCC
Confidence            652100                0                   0              00123568899999999999999


Q ss_pred             ceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEee
Q 005406          272 KGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPS  349 (698)
Q Consensus       272 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~  349 (698)
                      |||++||+++.+.+......+++..+|+++..+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|++++
T Consensus       117 Kgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~  196 (414)
T PRK08308        117 KLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYA  196 (414)
T ss_pred             cEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEc
Confidence            9999999999998887777788889999999999999999865 677899999998877 78999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHH
Q 005406          350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD  429 (698)
Q Consensus       350 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~  429 (698)
                      +|+++..+.+....                                              ..+++.+++||+++++++.+
T Consensus       197 ~P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~  230 (414)
T PRK08308        197 VPLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFY  230 (414)
T ss_pred             CHHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHH
Confidence            99999888652100                                              02678899999999999999


Q ss_pred             HHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccC
Q 005406          430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK  509 (698)
Q Consensus       430 ~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~  509 (698)
                      .+++. +.++++.||+||++.+...  ......+++|+|+|++++++.+.       .+   ..|||++++         
T Consensus       231 ~~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~G~p~~~~~~~~~~~-------~~---~~gel~v~~---------  288 (414)
T PRK08308        231 KLRER-TTYMMQQYGCSEAGCVSIC--PDMKSHLDLGNPLPHVSVSAGSD-------EN---APEEIVVKM---------  288 (414)
T ss_pred             HHHHh-CChhhhccCccccCCeeec--CCCCCCCccCccCCCeEEEEecC-------CC---CCceEEEEc---------
Confidence            99876 6789999999999864432  22345678999999999998752       12   379999975         


Q ss_pred             ChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEE
Q 005406          510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLV  586 (698)
Q Consensus       510 ~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~v  586 (698)
                                .++||+|||+|++|+||+++|+||.||+||+ +|++|+|.+||+++.++|+|.+|+|++.++   ++.++
T Consensus       289 ----------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~  357 (414)
T PRK08308        289 ----------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVK  357 (414)
T ss_pred             ----------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEE
Confidence                      3689999999999999999999999999997 899999999999999999999999998554   46788


Q ss_pred             EEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCC
Q 005406          587 AIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIK  666 (698)
Q Consensus       587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~  666 (698)
                      ++++.+..          .+                 .++++++++ .+|+.|++|..+++++++|      +|++||++
T Consensus       358 ~~v~~~~~----------~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~  403 (414)
T PRK08308        358 AKVISHEE----------ID-----------------PVQLREWCI-QHLAPYQVPHEIESVTEIP------KNANGKVS  403 (414)
T ss_pred             EEEEeCCC----------CC-----------------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCCcCee
Confidence            88886542          11                 244555664 6899999999999999999      99999999


Q ss_pred             hHHH
Q 005406          667 RPQA  670 (698)
Q Consensus       667 R~~l  670 (698)
                      |+.|
T Consensus       404 r~~~  407 (414)
T PRK08308        404 RKLL  407 (414)
T ss_pred             hhhh
Confidence            9954

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=7.3e-58  Score=497.93  Aligned_cols=401  Identities=30%  Similarity=0.472  Sum_probs=320.0

Q ss_pred             HHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCe
Q 005406           85 FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI  164 (698)
Q Consensus        85 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~  164 (698)
                      |+++|+++||++|+++        +..+++||+||+++++++|.+|.+.|+++|++|+|+++|+++|+++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            6899999999999976        22478999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhccceEEEe----cccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHH
Q 005406          165 SVPLYDTLGPDAVKYVVNHAEIEAIFC----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ  240 (698)
Q Consensus       165 ~vpl~~~~~~~~l~~il~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (698)
                      ++|++|.++.+++.+++++++++++|+    +......+............++.++.....             ..+.+.
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  139 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP-------------KKEALK  139 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT-------------TCHHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccc-------------cccccc
Confidence            999999999999999999999999997    222233333443333344555655532210             001111


Q ss_pred             hcCCCCCCCCCC-CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc--cccccCCCcEEEEcCChhhHHHH-HHHH
Q 005406          241 SQGCSSPQPFCP-PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYER-ANQI  316 (698)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~~~-~~~~  316 (698)
                      ......... .+ ..++++++++|||||||.||+|+++|+++++.+..+.  ...+++  |++++++|++|.+++ ...+
T Consensus       140 ~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~  216 (417)
T PF00501_consen  140 SASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL  216 (417)
T ss_dssp             HHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred             ccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence            000000000 00 0579999999999999999999999999999877754  123333  699999999999999 6688


Q ss_pred             HHHHhCcEEEEeCCC----hhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          317 VSVYYGVAVGFYQGD----NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       317 ~~l~~G~~~~~~~~~----~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+++.|+++++.+..    +..+++.+++++||+++++|+++..+.+..... ..                         
T Consensus       217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~-------------------------  270 (417)
T PF00501_consen  217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK-------------------------  270 (417)
T ss_dssp             HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH-------------------------
T ss_pred             ccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc-------------------------
Confidence            999999999999842    467899999999999999999999997621111 00                         


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCC--CCCCCccCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD--NLSGHVGSPN  469 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~  469 (698)
                                  ......+++|.+++||+++++++.+++++.++. ++++.||+||++.+++......  ...+++|.|+
T Consensus       271 ------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  338 (417)
T PF00501_consen  271 ------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL  338 (417)
T ss_dssp             ------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred             ------------ccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence                        000011469999999999999999999999987 9999999999999887653222  4678999999


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      ++++++|+|.+++.+++.++   .|||+|+||+++.||+++|+.|.+.|+++|||+|||+|++|+||+|+++||.||+||
T Consensus       339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~  415 (417)
T PF00501_consen  339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIK  415 (417)
T ss_dssp             TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEE
T ss_pred             cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEE
Confidence            99999999977688777666   899999999999999999999999997668999999999999999999999999999


Q ss_pred             c
Q 005406          550 L  550 (698)
Q Consensus       550 l  550 (698)
                      +
T Consensus       416 ~  416 (417)
T PF00501_consen  416 V  416 (417)
T ss_dssp             E
T ss_pred             e
Confidence            6

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-55  Score=443.97  Aligned_cols=501  Identities=23%  Similarity=0.276  Sum_probs=388.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|++++|..+++++|+++|+++.       ++.+.+||+|++++++++|+.|+..|++.||.|+++|+|++|++.++|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~-------~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE-------GPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe-------CCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            4678999999999999999999986       224679999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce-eEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      +.+++|++...||+++..+.+.|.++-++++++|++.+....+.++.+.+... -.++..+.....       .  .+.+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~-------~--g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP-------D--GIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC-------c--hHHH
Confidence            99999999999999999999999999999999999999888887774433221 112222221110       1  1123


Q ss_pred             HHHHHhcCCCCCCC---CCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          236 YLQLQSQGCSSPQP---FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       236 ~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      +...++.....+.+   ....+-.++++.+|||||||.||..++||.............++++++|+++..+|++|..+.
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~  298 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG  298 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence            33333333333322   233456789999999999999999999999998887777778999999999999999999998


Q ss_pred             HH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          313 AN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      +. +..++..|+|+++-. ++...++++..++++|++.-+-.+.+-|++..                             
T Consensus       299 ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p-----------------------------  349 (649)
T KOG1179|consen  299 ILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQP-----------------------------  349 (649)
T ss_pred             HHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCC-----------------------------
Confidence            87 567899999999987 89999999999999999998888887776521                             


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCc-eecccCcchhcchhcccCCCCCCCCCccCC-
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSP-  468 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p-  468 (698)
                        +++ .+          -..++|.++  |--+.+++++.|.++||.. |.+.||+||+....+..   +.+.|.+|+. 
T Consensus       350 --~~~-~e----------r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~  411 (649)
T KOG1179|consen  350 --PSP-EE----------RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---DGRVGACGFMS  411 (649)
T ss_pred             --CCh-hh----------cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---cCccccccchh
Confidence              110 00          114788766  4458899999999999866 99999999987654433   3344444442 


Q ss_pred             -----CCCcEEEEEecCCCC-------CCCCCCCCCccEEEEe--CCCc---cccccCChhhhcccc------cCCCcee
Q 005406          469 -----NPACEIKLVDVPEMN-------YTSEDQPHPRGEICVR--GPIV---FQGYYKNEVQTREVI------DGDGWLH  525 (698)
Q Consensus       469 -----~~~~~v~i~d~~~~~-------~~~~~~~~~~GEl~v~--g~~~---~~GY~~~~~~t~~~f------~~~gw~~  525 (698)
                           +--+++--+|+++++       .+...+||+.|.+.-+  -..-   |.||.+..++|++..      .+|-||.
T Consensus       412 ~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~  491 (649)
T KOG1179|consen  412 RLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFN  491 (649)
T ss_pred             hhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEe
Confidence                 122333333444443       3444556677865322  2233   899999888887664      4566999


Q ss_pred             cCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC--C--CCeEEEEEEcChhHHHHHHH
Q 005406          526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--F--NSCLVAIVAVDPDVLKDWAA  601 (698)
Q Consensus       526 TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~--~~~~va~vv~~~~~~~~~~~  601 (698)
                      |||+-.+|+.|+|||.||..|.+.. .||||+..|||.+|..+.++.|+.|+|..  .  +..-.|.|+.+++.      
T Consensus       492 tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~------  564 (649)
T KOG1179|consen  492 TGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT------  564 (649)
T ss_pred             eCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcc------
Confidence            9999999999999999999999997 89999999999999999999999999943  2  34456666655532      


Q ss_pred             HcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          602 SQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                                         +...+.+-..++ ..||+|.+|..+.+.+++.      +|.|.|.++..|.+.
T Consensus       565 -------------------~~d~~~l~~~l~-~~LP~YA~P~FlRl~~~i~------~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  565 -------------------EKDLEKLYQHLR-ENLPSYARPRFLRLQDEIE------KTGTFKLQKTELQKE  610 (649)
T ss_pred             -------------------cchHHHHHHHHH-hhCccccchHHHHHHhhhh------cccchhhHHHHHHHc
Confidence                               111344444443 7899999999999999999      999999999999874

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.1e-53  Score=463.79  Aligned_cols=389  Identities=22%  Similarity=0.308  Sum_probs=325.0

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecc
Q 005406          115 TYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP  193 (698)
Q Consensus       115 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~  193 (698)
                      ||.||.+.++++|++|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+.+.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcce
Q 005406          194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG  273 (698)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg  273 (698)
                      .....+.....      .++.....                 +..................++++++++|||||||.||+
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~  137 (408)
T TIGR01733        81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG  137 (408)
T ss_pred             chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence            76544322110      11111110                 00000000000011111457899999999999999999


Q ss_pred             eeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC----ChhhHHHHHhhhcCcEEee
Q 005406          274 AVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG----DNLKLMDDLAVLKPTIFPS  349 (698)
Q Consensus       274 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~  349 (698)
                      |.+||++++..+......+.+.++|++++.+|++|.+++...+.++..|+++++.+.    .+..+.+.++++++|.+.+
T Consensus       138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~  217 (408)
T TIGR01733       138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL  217 (408)
T ss_pred             EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence            999999999998888878888899999999999999999889999999999998873    2678888999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHH
Q 005406          350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD  429 (698)
Q Consensus       350 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~  429 (698)
                      +|.+++.+.+...                                             ....++|.+++||+++++++.+
T Consensus       218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~  252 (408)
T TIGR01733       218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD  252 (408)
T ss_pred             CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence            9999999876421                                             0115899999999999999999


Q ss_pred             HHHHHhC-CceecccCcchhcchhcccCCCC---C--CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCc
Q 005406          430 FLKVCFG-CQVMEGYGMTETSCIISAIDKGD---N--LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIV  503 (698)
Q Consensus       430 ~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~---~--~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~  503 (698)
                      ++.+.++ +.+++.||+||++.++.......   .  ..+++|.|+++++++|+|++ +..++.++   .|||+++|+++
T Consensus       253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~---~Gel~v~~~~~  328 (408)
T TIGR01733       253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGV---VGELYIGGPGV  328 (408)
T ss_pred             HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCC---ceEEEecCccc
Confidence            9999887 89999999999988765332222   1  26789999999999999954 66665554   89999999999


Q ss_pred             cccccCChhhhcccccCC------C--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEE
Q 005406          504 FQGYYKNEVQTREVIDGD------G--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCF  575 (698)
Q Consensus       504 ~~GY~~~~~~t~~~f~~~------g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~  575 (698)
                      +.||+++++.|.+.|..+      |  ||+|||+|++|++|.+++.||.||+|++ +|++|+|.+||+++..+|.|.+|+
T Consensus       329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~  407 (408)
T TIGR01733       329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAV  407 (408)
T ss_pred             cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhc
Confidence            999999999999887432      3  9999999999999999999999999997 899999999999999999999987


Q ss_pred             E
Q 005406          576 I  576 (698)
Q Consensus       576 V  576 (698)
                      |
T Consensus       408 v  408 (408)
T TIGR01733       408 V  408 (408)
T ss_pred             C
Confidence            5

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-47  Score=408.80  Aligned_cols=317  Identities=26%  Similarity=0.303  Sum_probs=263.3

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC---
Q 005406          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ---  329 (698)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~---  329 (698)
                      ..++++++|+|||||||.||||+++|+++.+.+......+  ...++++..+|++|.+++...+.+++.|++++++.   
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~  109 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA  109 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence            4578999999999999999999999999988877654433  35678999999999999988888999999988733   


Q ss_pred             -CChhhHHHHHhhhc--CcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005406          330 -GDNLKLMDDLAVLK--PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR  406 (698)
Q Consensus       330 -~~~~~l~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~  406 (698)
                       +++..+++.+++++  .++...+|..+..+......                                           
T Consensus       110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------------  146 (358)
T PRK07824        110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------------  146 (358)
T ss_pred             CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------------
Confidence             68999999999998  45666788777655431000                                           


Q ss_pred             HHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCC
Q 005406          407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS  486 (698)
Q Consensus       407 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~  486 (698)
                      .....++|.+++||+++++++.+++.+ +++++++.||+||++..+.          ..|.|++++++++.+        
T Consensus       147 ~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~--------  207 (358)
T PRK07824        147 TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED--------  207 (358)
T ss_pred             cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC--------
Confidence            000148999999999999999998876 5999999999999875432          368999999999843        


Q ss_pred             CCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHh
Q 005406          487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA  566 (698)
Q Consensus       487 ~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~  566 (698)
                             |||+++|+.++.||+++++.+  .|..+|||+|||+|++ ++|.++|+||.||+||+ +|++|+|.+||+++.
T Consensus       208 -------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~  276 (358)
T PRK07824        208 -------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVVEAALA  276 (358)
T ss_pred             -------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHHHHHHH
Confidence                   999999999999999998754  4557889999999999 89999999999999997 899999999999999


Q ss_pred             cCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceee
Q 005406          567 KCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAK  643 (698)
Q Consensus       567 ~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~  643 (698)
                      +||+|.+|+|++.++   ++.++++++.+...                         ....++|+++++ +.|+.|++|.
T Consensus       277 ~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-------------------------~~~~~~i~~~~~-~~l~~~~~P~  330 (358)
T PRK07824        277 THPAVADCAVFGLPDDRLGQRVVAAVVGDGGP-------------------------APTLEALRAHVA-RTLDRTAAPR  330 (358)
T ss_pred             hCCCcceEEEEecCCCCCceEEEEEEEeCCCC-------------------------CcCHHHHHHHHH-hhCccccCCC
Confidence            999999999999543   46788888765421                         011455666664 6899999999


Q ss_pred             EEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          644 AVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       644 ~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .|++++++|      +|++||++|++|++.|.+
T Consensus       331 ~i~~v~~lP------~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        331 ELHVVDELP------RRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             EEEEecCCC------CCCCccccHHHHHHHhhc
Confidence            999999999      999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.8e-44  Score=408.38  Aligned_cols=454  Identities=19%  Similarity=0.180  Sum_probs=365.0

Q ss_pred             hHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHHH
Q 005406            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (698)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (698)
                      ..+.++|.+.+.++..+|...++++++......                 .   . .|     .   ...+.+...++++
T Consensus       181 ~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~-----------------~---~-~~-----~---~~~~~~~~~~i~~  231 (642)
T COG1020         181 ERELRHFLQLLAALADAPRTSLSALPLLLPSER-----------------E---V-WN-----A---LAAPIPLRLTIHL  231 (642)
T ss_pred             HHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH-----------------h---h-cc-----c---cccCCCccchHHH
Confidence            567889999999999999977888877764420                 0   0 00     0   0112334578999


Q ss_pred             HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        84 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      .|...+.+.|++.|+...         ...+||+|+..+++++|+.|.+.|+++++.|+++.+++.++++.++|++++|+
T Consensus       232 ~f~~~a~~~p~~~a~~~~---------~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~  302 (642)
T COG1020         232 LFEEQAATTPDAVALVRG---------GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA  302 (642)
T ss_pred             HHHHHHHhCCCceeEecC---------CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCC
Confidence            999999999999888542         24599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhcC
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (698)
                      .++|+++.++.+++.+++++++++.+++.........    .++.    +..+...                    ....
T Consensus       303 ~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~--------------------~~~~  354 (642)
T COG1020         303 AYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDAL--------------------SEIP  354 (642)
T ss_pred             eEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----ccccccc--------------------ccCC
Confidence            9999999999999999999999999999833211000    0110    1111100                    0000


Q ss_pred             CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCc
Q 005406          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (698)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (698)
                      ...+. .....+++.+|++|||||||.||||+++|+++.+.+.+....+.++..|+++...++.++.+....+.++..|+
T Consensus       355 ~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~  433 (642)
T COG1020         355 DTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGA  433 (642)
T ss_pred             ccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCC
Confidence            00000 12345689999999999999999999999999998888877799999999999999999999999999999999


Q ss_pred             EEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHH
Q 005406          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (698)
Q Consensus       324 ~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (698)
                      ++++.+    .++..+.+.+.++++|++..+|.++..+.........                         .       
T Consensus       434 ~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-------------------------~-------  481 (642)
T COG1020         434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL-------------------------I-------  481 (642)
T ss_pred             EEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-------------------------c-------
Confidence            999987    5889999999999999999999999888763100000                         0       


Q ss_pred             HHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh--CCceecccCcchhcchhcccCCCCCC--CCCccCCCCCcEEE
Q 005406          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAIDKGDNL--SGHVGSPNPACEIK  475 (698)
Q Consensus       400 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~l~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p~~~~~v~  475 (698)
                              .....+|.+++||+.++..+...+....  ...+.+.||+||++............  ..++|+|++++.++
T Consensus       482 --------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~  553 (642)
T COG1020         482 --------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLY  553 (642)
T ss_pred             --------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEE
Confidence                    0002489999999999999999877655  46899999999977665544433322  35899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCcee
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~  555 (698)
                      |+| +....++.+.   .||+++.|.++.+||+++|+.|.+.|..+.+|+|||++++++||.+.++||.|+++|+ +|++
T Consensus       554 ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki-~g~R  628 (642)
T COG1020         554 ILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI-RGFR  628 (642)
T ss_pred             EEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEe-ceEe
Confidence            999 6666666665   7999999999999999999999999955469999999999999999999999999998 8999


Q ss_pred             ecchHHHHHHhcCc
Q 005406          556 VAPEKIENVYAKCK  569 (698)
Q Consensus       556 v~p~eIE~~l~~~p  569 (698)
                      |++.|||..+.++|
T Consensus       629 iel~eie~~l~~~~  642 (642)
T COG1020         629 IELGEIEAALAEQP  642 (642)
T ss_pred             cCcHHHHHHHhcCC
Confidence            99999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=9.1e-40  Score=346.00  Aligned_cols=287  Identities=20%  Similarity=0.181  Sum_probs=226.5

Q ss_pred             CCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccC--CCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC-CC
Q 005406          256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GD  331 (698)
Q Consensus       256 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~  331 (698)
                      +..++++|||||||.||||++||+++++.+......+++.  +.|++++++|++|.+++.. .+.++..|+++++.+ ++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            4578999999999999999999999998887766666664  3468999999999999865 677888999998876 67


Q ss_pred             hhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCC
Q 005406          332 NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG  411 (698)
Q Consensus       332 ~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~  411 (698)
                      +..+++.++..  |+++++|++|..+.+..                                              ...+
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----------------------------------------------~~l~  206 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----------------------------------------------YRLP  206 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----------------------------------------------cCCC
Confidence            77788777643  89999999998886520                                              0003


Q ss_pred             cEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCC
Q 005406          412 RVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (698)
Q Consensus       412 ~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~  490 (698)
                      +++. ++||+++++++.+.+++. +. .++++||+||+++++....     ++..|.|.|++++++ +  ++        
T Consensus       207 slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~--~~--------  268 (386)
T TIGR02372       207 GVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D--TL--------  268 (386)
T ss_pred             ccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC-C--Cc--------
Confidence            5665 678999999999999875 64 6999999999987554321     234677888776543 1  10        


Q ss_pred             CCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcC
Q 005406          491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF  570 (698)
Q Consensus       491 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~  570 (698)
                         .+   .|+                   ..|++|||+|+||++|+|+|+||+||+||+ +|++|+|.+||+++.+||.
T Consensus       269 ---~~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~  322 (386)
T TIGR02372       269 ---SS---AGL-------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPR  322 (386)
T ss_pred             ---cC---CCc-------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCC
Confidence               00   011                   236899999999999999999999999997 8999999999999999999


Q ss_pred             ceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecC
Q 005406          571 VLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE  650 (698)
Q Consensus       571 V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~  650 (698)
                      |.+|+|..  .++.+.|+|+++++.                    +.   +.+.++|+++++ .+|+.|++|+.+.++++
T Consensus       323 V~~~~v~~--~g~~~~a~vv~~~~~--------------------~~---~~~~~~l~~~~~-~~L~~~~~P~~i~~~~~  376 (386)
T TIGR02372       323 VRAAAVRL--DGRRLKAFIVVAEDA--------------------DE---AELEIELRATAA-RHLPAPARPDRFRFGTE  376 (386)
T ss_pred             ceEEEEEc--CCceEEEEEEECCCC--------------------Ch---HHHHHHHHHHHH-HhCCCCCCCcEEEEccc
Confidence            99999974  357889999987532                    00   123456777775 68999999999999999


Q ss_pred             CCCCCCCccCcccCCC
Q 005406          651 PFSVENGLLTPTFKIK  666 (698)
Q Consensus       651 ~p~~~~~~~T~~GKi~  666 (698)
                      +|      +|++||++
T Consensus       377 lP------~t~~GKi~  386 (386)
T TIGR02372       377 LP------RTGAGKLA  386 (386)
T ss_pred             CC------CCCCCCcC
Confidence            99      99999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=6.2e-35  Score=317.02  Aligned_cols=329  Identities=17%  Similarity=0.156  Sum_probs=233.8

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc---ccccccCCCcEEEEcCChhhHHH-HHHHHHHHHhCcEEEEe
Q 005406          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFY  328 (698)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~-~~~~~~~l~~G~~~~~~  328 (698)
                      ..++++++++|||||||.||+|.+||.++.......   ...+++.++|++++..+..+..+ +...+.+...|++++..
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            356788999999999999999999999986653332   23367889999988776654333 33345577789888876


Q ss_pred             C-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 005406          329 Q-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE  407 (698)
Q Consensus       329 ~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~  407 (698)
                      + .++..+++.|++++||+++++|+++..|++.....                         +..+              
T Consensus       152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~--------------  192 (422)
T TIGR02155       152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDP--------------  192 (422)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCc--------------
Confidence            5 67899999999999999999999999887643211                         0000              


Q ss_pred             HcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCC--CCcEEEEEecCCCCCC
Q 005406          408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN--PACEIKLVDVPEMNYT  485 (698)
Q Consensus       408 ~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~i~d~~~~~~~  485 (698)
                       ...++|.+++||+++++++.+.+.+.||+++++.||+||+++..........   ..|.++  +++.++|+|++++..+
T Consensus       193 -~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~---~~g~~~~~~~~~~eivd~~~g~~v  268 (422)
T TIGR02155       193 -AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET---QDGLHIWEDHFYPEIIDPHTGEVL  268 (422)
T ss_pred             -ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc---CCCceEecCeeEEEEECCCCCCCC
Confidence             0037999999999999999999999999999999999998532111111111   123333  3577889996677766


Q ss_pred             CCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC-C-----cEEEEccCCCeEecCCceeecch
Q 005406          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-G-----RLKIIDRKKNIFKLAQGEYVAPE  559 (698)
Q Consensus       486 ~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~-G-----~l~i~GR~~d~ikls~G~~v~p~  559 (698)
                      +.++   .|||++++.            +++.| ..+||+|||+|+++++ |     .++|.||.||+||+ +|.+|+|.
T Consensus       269 ~~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p~  331 (422)
T TIGR02155       269 PDGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFPT  331 (422)
T ss_pred             CCCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECHH
Confidence            6555   899999973            33445 5789999999999876 4     47899999999997 79999999


Q ss_pred             HHHHHHhcCcCce-eEEEEEcCC--CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCC
Q 005406          560 KIENVYAKCKFVL-QCFIYGDSF--NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQL  636 (698)
Q Consensus       560 eIE~~l~~~p~V~-~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L  636 (698)
                      +||+++.+||+|. ++.+.....  .+.+++.|++.++...                ....+-...+.++|.+.++ ..+
T Consensus       332 eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~-~~~  394 (422)
T TIGR02155       332 QLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT----------------LRLHEQASLLAGEIQHTIK-QEV  394 (422)
T ss_pred             HHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc----------------ccchHHHHHHHHHHHHHHH-hcc
Confidence            9999999999998 444433222  2467676666542200                0011112334555666664 455


Q ss_pred             CCcceeeEEEEe--cCCCCCCCCccCcccCCChH
Q 005406          637 RGFEYAKAVTLM--PEPFSVENGLLTPTFKIKRP  668 (698)
Q Consensus       637 ~~~~~p~~i~~~--~~~p~~~~~~~T~~GKi~R~  668 (698)
                      ..+.   .|.++  +++|      +|+ ||++|.
T Consensus       395 ~~~~---~v~~~~~~~lp------~~~-GK~~~~  418 (422)
T TIGR02155       395 GVSM---DVHLVEPGSLP------RSE-GKARRV  418 (422)
T ss_pred             CcEE---EEEEECCCCcc------CCC-CCceEE
Confidence            5442   35554  5899      888 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=4.3e-31  Score=296.85  Aligned_cols=503  Identities=16%  Similarity=0.125  Sum_probs=327.1

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      +.++.+.|.+.+..+|++.+..+.+.. ...+....+||++.....+.+++.|...|..+|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPTA-SESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeecc-cccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            457788899999999999999876542 2233355689999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCC----HHHHHHH---HhhccceEEEecccchHHHHhhh-hc-CCceeEEEEeCCCCCCCCCCCCC
Q 005406          158 CSAYSYISVPLYDTLG----PDAVKYV---VNHAEIEAIFCIPQTLNTLLSFI-SE-IPSVHLIVVVGGKDEHLPSLPST  228 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~----~~~l~~i---l~~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~~ii~~~~~~~~~~~~~~~  228 (698)
                      .+++|..+++++|.++    ++.+..+   +......+  ....   .+.... .. .+... +                
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l---~i~~~~~~~~~~~~s-v----------------  171 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRL---NIIDILLNSLFPKLS-V----------------  171 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhhh---hhHHHHhhccccccc-h----------------
Confidence            9999999999999999    3322111   11111111  0000   000000 00 00000 0                


Q ss_pred             CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCCh-h
Q 005406          229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL-A  307 (698)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl-~  307 (698)
                      ... .-.|..+.....  ........+|..+++.||||+||.||||.-+|..+.+...+....+..+.++++-....+ +
T Consensus       172 ~~~-~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~  248 (1032)
T KOG1178|consen  172 ETI-ADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYF  248 (1032)
T ss_pred             hhc-cchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeec
Confidence            000 011111111110  111223457889999999999999999999999999999998888888888876333333 2


Q ss_pred             hHHHHHHHHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005406          308 HIYERANQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (698)
Q Consensus       308 h~~~~~~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (698)
                      |+.-.....+.++.|..+..+.    ..+..+.+.+++++++....+|++.+.+...........        ..+    
T Consensus       249 ~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l--------~~~----  316 (1032)
T KOG1178|consen  249 DDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLL--------EHA----  316 (1032)
T ss_pred             ccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhh--------hhh----
Confidence            2222223334455555444433    357899999999999999999999888876322110000        000    


Q ss_pred             HHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCC
Q 005406          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLS  462 (698)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~  462 (698)
                         ...+...+              --+.|+....+|++....+...+...+ ..-...-|+.|+..+.........   
T Consensus       317 ---~~~~dl~~--------------~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~---  376 (1032)
T KOG1178|consen  317 ---FSLSDLLT--------------KRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP---  376 (1032)
T ss_pred             ---hhcccccc--------------cchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc---
Confidence               00000000              004799999999999999887444433 222334488888776554432211   


Q ss_pred             CCccCCCCCcEEEEEecCCC---------CCCCCCC---CCC----ccEEEEeCCCccccccCChhhhcccc-----cCC
Q 005406          463 GHVGSPNPACEIKLVDVPEM---------NYTSEDQ---PHP----RGEICVRGPIVFQGYYKNEVQTREVI-----DGD  521 (698)
Q Consensus       463 ~~vG~p~~~~~v~i~d~~~~---------~~~~~~~---~~~----~GEl~v~g~~~~~GY~~~~~~t~~~f-----~~~  521 (698)
                        .+.-+-...+.++...+.         .+...+.   ++.    .|+-+..+..+..| +..++.....+     ..+
T Consensus       377 --s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~  453 (1032)
T KOG1178|consen  377 --SKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKA  453 (1032)
T ss_pred             --ccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchh
Confidence              111111222222211110         0000111   100    12222223344445 34444443333     245


Q ss_pred             CceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHH
Q 005406          522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKD  598 (698)
Q Consensus       522 gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~  598 (698)
                      ..|+|||+|+..++|.+.|.||.|++||+ +|.+|...||+.++..||.|.++++....+   ++.++|||++....   
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~---  529 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS---  529 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC---
Confidence            58999999999999999999999999998 899999999999999999999999887432   56899999988642   


Q ss_pred             HHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          599 WAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                             +              ......|+.+++ ..|+.|++|..++.++++|      +|++||||+++|.+.
T Consensus       530 -------~--------------~~~~~~i~~~l~-~~La~y~vPs~~V~l~~vP------l~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  530 -------K--------------SVLIRDIRNYLK-KELASYMLPSLVVPLAKVP------LNPNGKVDKKALLEY  576 (1032)
T ss_pred             -------C--------------chhHHHHHHhhc-ccccceecceEEEEhhhCC------cCCCCCcChhhhhhh
Confidence                   1              011677888886 8999999999999999999      999999999999983

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=2.9e-28  Score=264.65  Aligned_cols=515  Identities=16%  Similarity=0.155  Sum_probs=348.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ..++.|+|+++++++||++|+...   ++.......+||++|..+|.+++.+|+.. -+++||.|++++++++|++++++
T Consensus       769 l~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~  845 (1363)
T KOG3628|consen  769 LLTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIY  845 (1363)
T ss_pred             HHHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHH
Confidence            378999999999999999999886   66666678899999999999999999976 57999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCC------HHHHHHHHhhccceEEEecccchHHHHhh--hh--cCCceeEEEEeCCCCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLG------PDAVKYVVNHAEIEAIFCIPQTLNTLLSF--IS--EIPSVHLIVVVGGKDEHLPSLP  226 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~------~~~l~~il~~~~~~~v~~~~~~~~~~~~~--~~--~~~~~~~ii~~~~~~~~~~~~~  226 (698)
                      ||+.+|.+++|+.|.-.      -..+..|++..++..|+++......+.+.  ..  .......++..++....     
T Consensus       846 ~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t-----  920 (1363)
T KOG3628|consen  846 ACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPET-----  920 (1363)
T ss_pred             HHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchh-----
Confidence            99999999999987543      34788999999999999997654433321  11  01111222222221100     


Q ss_pred             CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCCh
Q 005406          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL  306 (698)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl  306 (698)
                           .......+.+.  ..+.++...+++.+|++-+.--++|.--||.++|.++++.+........+.+..-++.+.+.
T Consensus       921 -----~~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~  993 (1363)
T KOG3628|consen  921 -----IRKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSP  993 (1363)
T ss_pred             -----hhhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecC
Confidence                 00011111111  11223334567899999999889999999999999999999999998888888888888888


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (698)
                      +-..|+.. ++..+|.|....+++     .++..++..|+++++.-++.+-..++.+.+....+......          
T Consensus       994 ~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~---------- 1063 (1363)
T KOG3628|consen  994 YSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSK---------- 1063 (1363)
T ss_pred             ccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhh----------
Confidence            87777776 788999999988876     58999999999999998888888777776643322211100          


Q ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh---CC---ceecccCcchhcchhcc
Q 005406          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISA  454 (698)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~l~~~YG~TE~~~~~~~  454 (698)
                              .+.      +            .+-..++..-+.....+..-+.+.+   |.   .+--.|+.-=.-.++..
T Consensus      1064 --------~gn------n------------~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r 1117 (1363)
T KOG3628|consen 1064 --------RGN------N------------TSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLR 1117 (1363)
T ss_pred             --------hhc------c------------cccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhc
Confidence                    000      0            0001222222222233333222222   10   12222221111111110


Q ss_pred             -----------c----------------CCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccc
Q 005406          455 -----------I----------------DKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY  507 (698)
Q Consensus       455 -----------~----------------~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY  507 (698)
                                 .                .+.....-..|...+++++.|+++++..++.+++   .||||+.|..-+.+|
T Consensus      1118 ~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~ 1194 (1363)
T KOG3628|consen 1118 SYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCS 1194 (1363)
T ss_pred             cccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEeccccccccc
Confidence                       0                0000111224888899999999999888888876   999999999988888


Q ss_pred             cCChh-hhcccc---------cCCCceecCcEEEEe------cC----CcEEEEccCCCeEecCCceeecchHHHHHH-h
Q 005406          508 YKNEV-QTREVI---------DGDGWLHTGDIGLWL------PG----GRLKIIDRKKNIFKLAQGEYVAPEKIENVY-A  566 (698)
Q Consensus       508 ~~~~~-~t~~~f---------~~~gw~~TGDlg~~~------~~----G~l~i~GR~~d~ikls~G~~v~p~eIE~~l-~  566 (698)
                      ++-.+ .....|         ++.+|-||||+|++.      .+    ..||++|-.++.+.+ +|.+.+|.+||..+ +
T Consensus      1195 ~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~ 1273 (1363)
T KOG3628|consen 1195 FTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVER 1273 (1363)
T ss_pred             cccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHH
Confidence            76321 111222         355699999999984      22    359999999999999 89999999999999 7


Q ss_pred             cCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceee-EE
Q 005406          567 KCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAK-AV  645 (698)
Q Consensus       567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~-~i  645 (698)
                      .||.|..|+|+..  ...+|.++....+.                      ++.+.+---+.     .-|..+.++- -+
T Consensus      1274 vH~~I~~cavF~~--~glvVvviE~~gq~----------------------~~~~LvPlIv~-----~vL~eH~iI~dvV 1324 (1363)
T KOG3628|consen 1274 VHPSIGGCAVFQA--TGLVVVVIECHGQQ----------------------ELADLVPLIVN-----VVLEEHYIILDVV 1324 (1363)
T ss_pred             hcccccceeeEee--CCeEEEEEEecCch----------------------hHhhhhHHHHH-----HHHhhcceEEEEE
Confidence            7999999999974  45555555555421                      11111111122     2233444444 45


Q ss_pred             EEecC--CCCCCCCccCcccCCChHHHHHHH-HHHHHHHH
Q 005406          646 TLMPE--PFSVENGLLTPTFKIKRPQAKERF-AKAISNMY  682 (698)
Q Consensus       646 ~~~~~--~p~~~~~~~T~~GKi~R~~l~~~~-~~~i~~ly  682 (698)
                      .+++.  +|      +++.|--+|..+++.| ..+++.+|
T Consensus      1325 ~fV~~G~~p------~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1325 AFVDKGVFP------RNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred             EEecCCccc------cCCchhhHHHHHHHHHHhcccceee
Confidence            56653  66      9999999999988875 44555544

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=2.7e-26  Score=249.44  Aligned_cols=259  Identities=17%  Similarity=0.179  Sum_probs=187.1

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEe
Q 005406          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFY  328 (698)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~  328 (698)
                      ...++++.++|||||||.||+|.+||.++..........   .++.++|+++...|+.+..+... .+.+...|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            356789999999999999999999999987665443332   47889999999999888766544 45567788876543


Q ss_pred             CCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHH
Q 005406          329 QGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER  408 (698)
Q Consensus       329 ~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~  408 (698)
                       +.....++.|+.+++|.++++|+.+..+.+.....                         +..+               
T Consensus       163 -~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~---------------  201 (445)
T TIGR03335       163 -GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDP---------------  201 (445)
T ss_pred             -CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCc---------------
Confidence             34456788999999999999999887776532211                         0000               


Q ss_pred             cCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCC--CCcEEEEEecCCCCCCC
Q 005406          409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN--PACEIKLVDVPEMNYTS  486 (698)
Q Consensus       409 ~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~i~d~~~~~~~~  486 (698)
                      ...++|.+++||++++++..+.+.+.+|+++++.||+||++.. ..+..      ..|..+  +.+.++|+|++++..++
T Consensus       202 ~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp  274 (445)
T TIGR03335       202 AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLP  274 (445)
T ss_pred             ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCc
Confidence            0047999999999999999999998899999999999998632 22211      123333  45789999966555566


Q ss_pred             CCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec-C----C----cEEEEccCCCeEecCCceeec
Q 005406          487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-G----G----RLKIIDRKKNIFKLAQGEYVA  557 (698)
Q Consensus       487 ~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~-~----G----~l~i~GR~~d~ikls~G~~v~  557 (698)
                      +|+   .|||++++-.-..        +.+.+ +==-|+|||++++.. +    |    ++..+||.||++++ +|.+|+
T Consensus       275 ~Ge---~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~  341 (445)
T TIGR03335       275 DGE---CGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFN  341 (445)
T ss_pred             CCC---ceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeC
Confidence            555   8999998742100        00000 001289999999732 2    3    25557999999999 899999


Q ss_pred             chHHHHHHhcC---cCce
Q 005406          558 PEKIENVYAKC---KFVL  572 (698)
Q Consensus       558 p~eIE~~l~~~---p~V~  572 (698)
                      |.+||++|.++   +++.
T Consensus       342 p~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       342 RVDVERAVFQRENMDSLT  359 (445)
T ss_pred             HHHHHHHHhccCCCCCCC
Confidence            99999999994   5554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=4e-25  Score=216.88  Aligned_cols=222  Identities=13%  Similarity=0.044  Sum_probs=164.7

Q ss_pred             HHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005406           85 FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (698)
Q Consensus        85 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~  163 (698)
                      +...++++|+++|+++.   +...++.+.+||+|+.++++++|++|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            46678889999999753   2211123569999999999999999998 7999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCC-CCCCCCCCceEeeHHHHHhc
Q 005406          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-PSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       164 ~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  242 (698)
                      +++|++             ++++++++++.+....+.     .+  +.++.+....... .......+  ..+|.+....
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGELPPG--VIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCCCCCc--ccchhhhhhc
Confidence            999995             789999999987765532     11  2233321100000 00000111  2456665543


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHh
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY  321 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~  321 (698)
                      ......+.....++|++.|+|||||         +|++++...    ...+++++|+++ .+|++|++|+.. ++.+++.
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~  202 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAA  202 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhcc
Confidence            2221111213567999999999986         666665544    446789999999 999999999976 7789999


Q ss_pred             CcEEEEeC-CChhhHHHHHhhhcCc
Q 005406          322 GVAVGFYQ-GDNLKLMDDLAVLKPT  345 (698)
Q Consensus       322 G~~~~~~~-~~~~~l~~~i~~~~~t  345 (698)
                      |+++++++ +++..+++.|+++|+|
T Consensus       203 G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       203 GGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             CceEEEecCCCHHHHHHHHHhhcCC
Confidence            99999888 8999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=2.4e-22  Score=207.02  Aligned_cols=280  Identities=20%  Similarity=0.201  Sum_probs=205.5

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChh-hHHHHHHHHHHHHhCcEEEEe
Q 005406          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA-HIYERANQIVSVYYGVAVGFY  328 (698)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~-h~~~~~~~~~~l~~G~~~~~~  328 (698)
                      ..-++...|--||||||.|+-+.+|+..+......+...   .+...+|++..+.-.. +..|+.....+--.|++++-.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            445677779999999999999999998876554444333   5677788775544311 112223333444466666554


Q ss_pred             C-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 005406          329 Q-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE  407 (698)
Q Consensus       329 ~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~  407 (698)
                      . ++...-++.++.++||++.++|+.+..|++.+.....                         .+    +.        
T Consensus       167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~-------------------------~~----~~--------  209 (438)
T COG1541         167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI-------------------------DP----DK--------  209 (438)
T ss_pred             CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC-------------------------Ch----hh--------
Confidence            4 5899999999999999999999999999886554310                         00    00        


Q ss_pred             HcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchh-cccCCCCCCCCCccCCCCCcEEEEEecCCCCCCC
Q 005406          408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII-SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS  486 (698)
Q Consensus       408 ~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~  486 (698)
                         .++|.+++|+|+++++..+.+...+|+..++.||+||..+.. .-+..  ..  -.-..-+..-+.|+|++++.+++
T Consensus       210 ---~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~--~~--glhi~eD~~~~Ei~dP~t~e~l~  282 (438)
T COG1541         210 ---LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTE--RN--GLHIWEDHFIFEIVDPETGEQLP  282 (438)
T ss_pred             ---cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccc--cc--CCCcchhhceeeeecCCcCccCC
Confidence               489999999999999999999999999999999999997663 21111  11  11223466888999999999998


Q ss_pred             CCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC----Cc-----EEEEccCCCeEecCCceeec
Q 005406          487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GR-----LKIIDRKKNIFKLAQGEYVA  557 (698)
Q Consensus       487 ~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~----G~-----l~i~GR~~d~ikls~G~~v~  557 (698)
                      +++   .|||.+..-.            ++.+ +-=-|+|||++.+.++    |.     -.|.||.||++++ .|.+|+
T Consensus       283 dge---~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~vf  345 (438)
T COG1541         283 DGE---RGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNVF  345 (438)
T ss_pred             CCC---eeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEeC
Confidence            887   8999998622            1111 1113999999999764    32     6689999999999 699999


Q ss_pred             chHHHHHHhcCcCce---eEEEEEcCCCCeEEEEEEcCh
Q 005406          558 PEKIENVYAKCKFVL---QCFIYGDSFNSCLVAIVAVDP  593 (698)
Q Consensus       558 p~eIE~~l~~~p~V~---~~~V~g~~~~~~~va~vv~~~  593 (698)
                      |..||.++.+.+.+.   ++++........+..-|+..+
T Consensus       346 p~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~  384 (438)
T COG1541         346 PSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN  384 (438)
T ss_pred             HHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence            999999999999999   666766444566766666654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.80  E-value=2e-19  Score=186.51  Aligned_cols=113  Identities=16%  Similarity=0.072  Sum_probs=99.3

Q ss_pred             CCCceecCcEEEE-ecCCcEEEEccCCCeEecCCc---eeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcC
Q 005406          520 GDGWLHTGDIGLW-LPGGRLKIIDRKKNIFKLAQG---EYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVD  592 (698)
Q Consensus       520 ~~gw~~TGDlg~~-~~~G~l~i~GR~~d~ikls~G---~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~  592 (698)
                      .+|||+|||+|++ |++|+|+|.||.|      +|   ++|+|. ||++|.+||+|.+|+|+|.++   ++.++|+|++.
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            7899999999998 6999999999997      68   899999 999999999999999999654   57899999976


Q ss_pred             hhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          593 PDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      ..          .+                 .++|+++++ .+|+. ++|+.|.+++++|      +|++||++|++|++
T Consensus       280 ~~----------~~-----------------~~el~~~l~-~~L~~-kvP~~v~~v~~lP------~t~~GKi~R~~Lr~  324 (365)
T PRK09188        280 LP----------AD-----------------EKSLRARLA-GAKPP-KPPEHIQPVAALP------RDADGTVRDDILRL  324 (365)
T ss_pred             CC----------CC-----------------HHHHHHHHH-hhchh-cCCcEEEEECCCC------CCCCCCccHHHHHH
Confidence            31          11                 356777775 78999 9999999999999      99999999999998


Q ss_pred             HH
Q 005406          673 RF  674 (698)
Q Consensus       673 ~~  674 (698)
                      ..
T Consensus       325 ~~  326 (365)
T PRK09188        325 IA  326 (365)
T ss_pred             Hh
Confidence            75

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.80  E-value=8.8e-18  Score=183.82  Aligned_cols=509  Identities=14%  Similarity=0.140  Sum_probs=327.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCC--HhHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGS-GLLFHGLQKGVRIGLYLINR--PEWLI  153 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~i~~~n~--~e~~~  153 (698)
                      ....+..+++++-.+++..+|.++.   |.+.. ...+||..+..+|.++|+ .|-+.|+.++++|.++..-+  .|+++
T Consensus        92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i  167 (1363)
T KOG3628|consen   92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI  167 (1363)
T ss_pred             hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence            4556778888888899999999886   66544 788999999999999999 67778999999999999776  69999


Q ss_pred             HHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc-e
Q 005406          154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV-K  232 (698)
Q Consensus       154 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~  232 (698)
                      ..++|...|.+++|+.+..+.+++..+++....+++++................-.+.+          ..+. .... .
T Consensus       168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v----------~~w~-t~~~k~  236 (1363)
T KOG3628|consen  168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAV----------AWWK-TNDFKG  236 (1363)
T ss_pred             hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHH----------Hhhh-cccccc
Confidence            99999999999999999999999999999999999998866544332211000000000          0000 0000 0


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc--------------------cc
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL--------------------MV  292 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------------------~~  292 (698)
                      .+.++..       ..+  ...-. ..+|-||++++|.--||+++|+ +..+.+....                    .+
T Consensus       237 ~~~~~k~-------~~P--~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~  305 (1363)
T KOG3628|consen  237 NYTKDKI-------KKP--RMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF  305 (1363)
T ss_pred             eeehhhc-------cCC--ceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence            1111110       011  11112 8899999999999999999998 5433322211                    13


Q ss_pred             ccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhh
Q 005406          293 QFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA  367 (698)
Q Consensus       293 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  367 (698)
                      +....++++..+...-..|+++ .+.+++.|.+.+..+    ..+..+.+.+-.+|.+++..--..+......+.+.   
T Consensus       306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~---  382 (1363)
T KOG3628|consen  306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED---  382 (1363)
T ss_pred             ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC---
Confidence            4456778888887777777776 778999999988877    46778888888999998876544433332221110   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH----hCCc-----
Q 005406          368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FGCQ-----  438 (698)
Q Consensus       368 ~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g~~-----  438 (698)
                                               |.   ..+.|.+-+....+++|.+++.-..+..+..+....+    +|..     
T Consensus       383 -------------------------p~---a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~  434 (1363)
T KOG3628|consen  383 -------------------------PK---ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVV  434 (1363)
T ss_pred             -------------------------cc---cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCccee
Confidence                                     00   0011222222233799999999999988876543332    2221     


Q ss_pred             -------------eecccCcchhcchhcccCCCC------------------------------CCCCCccCCCCC-cEE
Q 005406          439 -------------VMEGYGMTETSCIISAIDKGD------------------------------NLSGHVGSPNPA-CEI  474 (698)
Q Consensus       439 -------------l~~~YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~~v  474 (698)
                                   .+..=+++|.+...-..+...                              .....+|...|+ +.+
T Consensus       435 ~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~  514 (1363)
T KOG3628|consen  435 DFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATL  514 (1363)
T ss_pred             echhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEE
Confidence                         122223355544322211100                              012345666665 666


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc------------cCCCceecCcEEEEecCCcEEEEc
Q 005406          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI------------DGDGWLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f------------~~~gw~~TGDlg~~~~~G~l~i~G  542 (698)
                      .+++++....+..++   +|||||.++++..+||.-+..|...|            ....|.|||=+|++. +|.++++|
T Consensus       515 ~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~  590 (1363)
T KOG3628|consen  515 AVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLG  590 (1363)
T ss_pred             EEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEE
Confidence            777766666665555   99999999999999998887777666            123489999999996 55666666


Q ss_pred             cCCCeEecCCceeecch----------HHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHH
Q 005406          543 RKKNIFKLAQGEYVAPE----------KIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQ  612 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~----------eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~  612 (698)
                      -++|++.--.|.+.+..          -|+.+++..+.|-++.++-   .+.++.+++-.+...+.              
T Consensus       591 ~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e~--------------  653 (1363)
T KOG3628|consen  591 LKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATEE--------------  653 (1363)
T ss_pred             echhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhhh--------------
Confidence            55555533357666543          3556677788888888886   44555555555543210              


Q ss_pred             hhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          613 LCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       613 ~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                        +.-+....+.+.+...   +++..|-+  .++--+.+|      +|+-|-|.-.++++.|.+
T Consensus       654 --~~~q~~~~v~q~l~~i---Hqv~vyCi--livP~~tLP------rt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  654 --NSFQWMSRVFQALDSI---HQVGVYCI--LIVPANTLP------RTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             --hhhhHHHHHHHHHHHH---hcccceEE--EEeccccCC------CccccccccHHHHHHHHc
Confidence              1112223444444443   45555432  233335688      999888999888888853

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.72  E-value=4.9e-15  Score=157.54  Aligned_cols=258  Identities=19%  Similarity=0.222  Sum_probs=160.4

Q ss_pred             eEEEEecCCCCCCcceeeechHHHHHHHHhc---ccccccCCCcEEEEcCC-hhhHHHHHHHHHHHHh-CcEEEEeC--C
Q 005406          258 IATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLP-LAHIYERANQIVSVYY-GVAVGFYQ--G  330 (698)
Q Consensus       258 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~p-l~h~~~~~~~~~~l~~-G~~~~~~~--~  330 (698)
                      -..+..||||||.|-.+.++...........   ....++..++++..++. -.+.+.      .+.. ...+.+++  .
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDLLA  174 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHH------HHHhccceeeecCCCc
Confidence            3457789999999999999988653322211   11134455555544421 112221      1111 11133333  5


Q ss_pred             ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcC
Q 005406          331 DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG  410 (698)
Q Consensus       331 ~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g  410 (698)
                      +...+++.|++++|+++.+.|+.+..|++.+.+.-.                                           .
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-------------------------------------------~  211 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-------------------------------------------T  211 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------C
Confidence            788899999999999999999999999875432100                                           0


Q ss_pred             CcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCC
Q 005406          411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (698)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~  490 (698)
                      -+++.++++||+++++..+.+++.||+++++.||+|| |.+++.+..+.   -++-...--+|..++|++ +        
T Consensus       212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~~-~--------  278 (430)
T TIGR02304       212 IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDEH-K--------  278 (430)
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECCC-C--------
Confidence            2689999999999999999999999999999999999 54433332111   111111112333366621 1        


Q ss_pred             CCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC----Cc----E-EEEccCCCeEec--CCcee--ec
Q 005406          491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GR----L-KIIDRKKNIFKL--AQGEY--VA  557 (698)
Q Consensus       491 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~----G~----l-~i~GR~~d~ikl--s~G~~--v~  557 (698)
                        .++.+|.+      +.+.   +...    =-|+|||++.+.++    |.    | .|.||.+|++++  .+|..  |+
T Consensus       279 --~~~~ViT~------L~n~---~~Pl----IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~  343 (430)
T TIGR02304       279 --RFVPIITD------FTRT---TQPI----VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVF  343 (430)
T ss_pred             --ceEEEEec------CCCc---cceE----EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeC
Confidence              13334433      2221   0001    12899999988544    42    4 388999999985  35555  58


Q ss_pred             chHHHHHH-hcCcCceeEEEEEcCCCCeEEEEEEcCh
Q 005406          558 PEKIENVY-AKCKFVLQCFIYGDSFNSCLVAIVAVDP  593 (698)
Q Consensus       558 p~eIE~~l-~~~p~V~~~~V~g~~~~~~~va~vv~~~  593 (698)
                      |..++.++ ...++|.+.-++... ...+...+++.+
T Consensus       344 p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       344 PDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             HHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence            99999885 567899998887754 344444444443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.88  E-value=2.6e-09  Score=84.51  Aligned_cols=67  Identities=22%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             HHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCC
Q 005406          560 KIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQL  636 (698)
Q Consensus       560 eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L  636 (698)
                      |||+++.+||+|.+|+|++.++   ++.++|+|++ .                              .++|+++++ .+|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~------------------------------~~~i~~~~~-~~l   48 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D------------------------------EEEIRDHLR-DKL   48 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H------------------------------HHHHHHHHH-HHS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e------------------------------ecccccchh-hhC
Confidence            7999999999999999999653   4789999998 2                              255566665 569


Q ss_pred             CCccee--eEEEEecC-CCCCCCCccCcccC
Q 005406          637 RGFEYA--KAVTLMPE-PFSVENGLLTPTFK  664 (698)
Q Consensus       637 ~~~~~p--~~i~~~~~-~p~~~~~~~T~~GK  664 (698)
                      ++|++|  ..++.+++ +|      +|++||
T Consensus        49 ~~~~~P~~~~~v~~~~~lP------~t~~GK   73 (73)
T PF13193_consen   49 PPYMVPRRIRFVRLDEELP------RTPSGK   73 (73)
T ss_dssp             -GGGS-SEEEEEEESSSEE------BETTSS
T ss_pred             CCcceeeEEEEccccCcCC------CCCCCC
Confidence            999999  55555577 99      999998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.86  E-value=1.5e-07  Score=98.19  Aligned_cols=230  Identities=17%  Similarity=0.232  Sum_probs=133.7

Q ss_pred             CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc----cccCC-CcEEEEcCChhhH---HH-HH-HHHHHHHhCc
Q 005406          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM----VQFYP-SDIYMSYLPLAHI---YE-RA-NQIVSVYYGV  323 (698)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~-~d~~l~~~pl~h~---~~-~~-~~~~~l~~G~  323 (698)
                      .++++..++-||||||.|--+.+.+..+..........    .+... .-.++...|-...   ++ .. ..+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            45667788899999999866666666555444332222    12221 2233443443221   11 11 1222334455


Q ss_pred             EEEEeC--CChhhHHHHHh----hhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          324 AVGFYQ--GDNLKLMDDLA----VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       324 ~~~~~~--~~~~~l~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      ...+-.  .+...+++.+.    ..+|..++++|.++..+...+.+.-.                               
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~-------------------------------  215 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGI-------------------------------  215 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCC-------------------------------
Confidence            533322  35666666553    56788999999877766654332210                               


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecC------CCCCH-HHHHHHHHHhCC----ceecccCcchhcchhcccCCCCCCCCCcc
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGA------SPLSP-DVMDFLKVCFGC----QVMEGYGMTETSCIISAIDKGDNLSGHVG  466 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG------~~l~~-~~~~~~~~~~g~----~l~~~YG~TE~~~~~~~~~~~~~~~~~vG  466 (698)
                              +-.+....+.+-.||      +.+++ +..+.+.+.||+    .+++.|||||.....+-+..     ++. 
T Consensus       216 --------~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~-  281 (365)
T PF04443_consen  216 --------RFRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GHF-  281 (365)
T ss_pred             --------cccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC-----Ccc-
Confidence                    001113455666666      56765 455678888898    69999999997654333211     111 


Q ss_pred             CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC--------CcE
Q 005406          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG--------GRL  538 (698)
Q Consensus       467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~--------G~l  538 (698)
                       +.|.. +.|+|+.+..+++.|+   .|-|-+-.+... .             .-+..-|.|+|.+..+        .++
T Consensus       282 -~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f  342 (365)
T PF04443_consen  282 -HVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF  342 (365)
T ss_pred             -cCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence             22222 7788987777777765   888887765422 1             2344779999988654        279


Q ss_pred             EEEccCCCe
Q 005406          539 KIIDRKKNI  547 (698)
Q Consensus       539 ~i~GR~~d~  547 (698)
                      .++||.+.-
T Consensus       343 ~vlGR~~~a  351 (365)
T PF04443_consen  343 EVLGRADGA  351 (365)
T ss_pred             EEEeCCCCC
Confidence            999998754

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.51  E-value=2.5e-06  Score=94.31  Aligned_cols=162  Identities=17%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             CcEEEEEecCCCCCHHHHHHHHHHhC--CceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCC-----
Q 005406          411 GRVRFMGSGASPLSPDVMDFLKVCFG--CQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMN-----  483 (698)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~g--~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~-----  483 (698)
                      ++|++|.+-+..-.....+.++..+|  ..+..+|++||+...+-.. +  ...+.+=.|-.+ -+..++.++..     
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~--~~~~~~l~~~~~-ffEFip~~~~~~~~~~  342 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P--EDPGYVLAPDSG-FFEFIPVDEDEQNPSE  342 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C--CC--EEE-TTSS-EEEEEE-STT------
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C--CCCceEeecCCe-EEEEEeccCCcccccC
Confidence            57885555444444456667777675  3356999999964322221 1  111111112222 45555544432     


Q ss_pred             ---C--CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec--CC--cEEEEccCCCeEecCCce
Q 005406          484 ---Y--TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP--GG--RLKIIDRKKNIFKLAQGE  554 (698)
Q Consensus       484 ---~--~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~--~G--~l~i~GR~~d~ikls~G~  554 (698)
                         .  ..+.+.|..-||.|...   .|.|.              |+.||++++..  ++  .+.|+||.+.++.+ .||
T Consensus       343 ~~~~l~~~ele~G~~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~gE  404 (528)
T PF03321_consen  343 QPKTLLLHELEVGEEYELVITTN---SGLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FGE  404 (528)
T ss_dssp             -SSSEEGGG--TT-EEEEEEEST---TS-SS--------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS-
T ss_pred             CCceecHHHhcCCCeEEEEEecc---cceee--------------eecCCEEEEeeccCCCcEEEEeccCCceeec-cee
Confidence               1  11223344667877753   23332              89999999852  35  69999999999998 799


Q ss_pred             eecchHHHHHHhcC-----cCceeEEEEEcC---CCCeEEEEEEcChh
Q 005406          555 YVAPEKIENVYAKC-----KFVLQCFIYGDS---FNSCLVAIVAVDPD  594 (698)
Q Consensus       555 ~v~p~eIE~~l~~~-----p~V~~~~V~g~~---~~~~~va~vv~~~~  594 (698)
                      +++-.+|++++.+.     -.+.+..+..+.   ....-+.++.+...
T Consensus       405 kl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  405 KLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             -EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             ecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            99999999999664     335566666652   34555666666553

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.37  E-value=0.0001  Score=81.90  Aligned_cols=132  Identities=14%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhC-C-ceecccCcchhcchhcccCCCCCCCCCccCC--CCCcEEEEEecCCCCC----
Q 005406          413 VRFMGSGASPLSPDVMDFLKVCFG-C-QVMEGYGMTETSCIISAIDKGDNLSGHVGSP--NPACEIKLVDVPEMNY----  484 (698)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~g-~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p--~~~~~v~i~d~~~~~~----  484 (698)
                      +..++.||..   .....++..+| . .+..+|++||+.+.+-..+  ...+..++..  +.+.-+..++.++.+.    
T Consensus       307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~--~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~  381 (597)
T PLN02249        307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNP--MCKPSEVSYTIMPNMAYFEFLPHNHDGDGALD  381 (597)
T ss_pred             EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCC--CCCCCCcceEecCCcEEEEeeecccCCcccCC
Confidence            7777778755   55566666553 3 4679999999654332211  1111112221  2245555554332110    


Q ss_pred             ------CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC----CcEEEEccCCCeEecCCce
Q 005406          485 ------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQGE  554 (698)
Q Consensus       485 ------~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~----G~l~i~GR~~d~ikls~G~  554 (698)
                            +.+.+.|..-||+|...   .|-|.              |+.||++++..-    =.|.|+||.+.++.+ .||
T Consensus       382 ~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR--------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GE  443 (597)
T PLN02249        382 ETSLVELADVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESD  443 (597)
T ss_pred             CCcEecHHHcCCCCeEEEEEEcc---cceeE--------------eecCCEEEEeeccCCCcEEEEEccCCcceec-ccc
Confidence                  11122333566777642   23221              899999998532    269999999999998 899


Q ss_pred             eecchHHHHHHhc
Q 005406          555 YVAPEKIENVYAK  567 (698)
Q Consensus       555 ~v~p~eIE~~l~~  567 (698)
                      ++.-++++.++.+
T Consensus       444 Kl~e~~v~~Av~~  456 (597)
T PLN02249        444 KTDEADLQKAVEN  456 (597)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999998866

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.88  E-value=0.001  Score=73.41  Aligned_cols=139  Identities=14%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             CcEEEEEecCCCCCHHHHHHHHHHh-CCce-ecccCcchhcchhcccCCCCCCCCCccCCCCC-cEEEEEecCCCCC---
Q 005406          411 GRVRFMGSGASPLSPDVMDFLKVCF-GCQV-MEGYGMTETSCIISAIDKGDNLSGHVGSPNPA-CEIKLVDVPEMNY---  484 (698)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l-~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~-~~v~i~d~~~~~~---  484 (698)
                      +++++|.+--..-.......++..+ |.++ --+||+||+.+.+-..+..+.. ......+|+ .-+..++.++++.   
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~-~~sy~L~p~~~yFEFip~~~~~~~~~  371 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS-DVSYTLLPNMAYFEFLPVDKNNGEVI  371 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc-CCceeecCCcEEEEEeecCCCccccc
Confidence            5777766544334555666666555 5554 4699999975543332211111 112222333 2334443332210   


Q ss_pred             -----------------------CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEe----cCCc
Q 005406          485 -----------------------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL----PGGR  537 (698)
Q Consensus       485 -----------------------~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~----~~G~  537 (698)
                                             +.+.+.|..-||+|..   +.|.|              -||.||+.++.    ..=.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLY--------------RYrlGDvv~V~GF~n~~P~  434 (606)
T PLN02247        372 HFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLY--------------RYRVGDILMVTGFYNNAPQ  434 (606)
T ss_pred             ccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceE--------------EEecCCEEEEeeecCCCce
Confidence                                   0012223355676654   22322              28999998874    2246


Q ss_pred             EEEEccCCCeEecCCceeecchHHHHHHhcC
Q 005406          538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKC  568 (698)
Q Consensus       538 l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~  568 (698)
                      +.|++|.+.+..+ .|++..-.++-+++.+.
T Consensus       435 ~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        435 FRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence            9999999999998 89999999998888553

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.59  E-value=0.0041  Score=68.63  Aligned_cols=138  Identities=14%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             CcEEEEEecCCCCCHHHHHHHHHHh-CCc-eecccCcchhcchhcccCCCCCCCCCcc-CCCCC-cEEEEEecCCCC--C
Q 005406          411 GRVRFMGSGASPLSPDVMDFLKVCF-GCQ-VMEGYGMTETSCIISAIDKGDNLSGHVG-SPNPA-CEIKLVDVPEMN--Y  484 (698)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~-g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG-~p~~~-~~v~i~d~~~~~--~  484 (698)
                      +++++|.+-...-.......++..+ |.+ +--+|++||+.+.+-..+.  ..+..+. ..+|+ .-+..++.++.+  .
T Consensus       304 P~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~--~~p~~~sy~L~p~~~yFEFip~~~~~~~~  381 (612)
T PLN02620        304 PNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLIPTMAYFEFLPVHRNNGVT  381 (612)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC--CCcccceeeecCCcEEEEEeeccCccccc
Confidence            5777666544444455556666544 555 5589999997544332221  1112222 22333 223334322110  0


Q ss_pred             -------------------CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec----CCcEEEE
Q 005406          485 -------------------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKII  541 (698)
Q Consensus       485 -------------------~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~----~G~l~i~  541 (698)
                                         +.+.+.|..-||+|..   +.|.|              -|+.||+.++..    .=.+.|+
T Consensus       382 ~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLy--------------RYrlGDvv~V~Gf~n~~P~~~Fv  444 (612)
T PLN02620        382 NSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLY--------------RYRVGDVLRVAGFKNKAPQFSFI  444 (612)
T ss_pred             ccccccccccccccCccccHHHccCCCeEEEEEEe---cCceE--------------EEecCCEEEEeeecCCCceEEEE
Confidence                               1112233456777764   22322              189999988842    2469999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcC
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKC  568 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~  568 (698)
                      +|.+-+..+ .|++.+-.++-.++.+.
T Consensus       445 ~R~~~~lsi-~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        445 CRKNVVLSI-DSDKTDEVELQNAVKNA  470 (612)
T ss_pred             eecCceeec-ccccCCHHHHHHHHHHH
Confidence            999999998 89999999998887543

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.45  E-value=0.014  Score=48.61  Aligned_cols=86  Identities=21%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             ceeecchHHHHHHhcCcCce-eEEEE--EcCCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVL-QCFIY--GDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~-~~~V~--g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      |.||+|..||+++.++|++. +..++  -....+.+...|...++..              .+....+++.+.+.+.|++
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~--------------~~~~~~~~l~~~i~~~lk~   66 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS--------------DDAEDLEALAERIAERLKE   66 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC--------------TTHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC--------------cchHHHHHHHHHHHHHHHh
Confidence            78999999999999999999 33332  2334566667777776320              0011124455666666666


Q ss_pred             HHHhCCCCCcceeeEEEEec--CCCCCCCCccCcccCCCh
Q 005406          630 VGKEGQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKIKR  667 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi~R  667 (698)
                      .+   ++.    | .|.+++  .+|      +| .||.+|
T Consensus        67 ~l---gv~----~-~V~lv~~gtLp------r~-~~K~~R   91 (96)
T PF14535_consen   67 RL---GVR----P-EVELVPPGTLP------RS-EGKAKR   91 (96)
T ss_dssp             HH---SS-----E-EEEEE-TT-S----------SSSS-S
T ss_pred             hc---Cce----E-EEEEECCCCcc------CC-CCcceE
Confidence            54   232    2 566665  588      76 689877

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.71  E-value=0.38  Score=51.14  Aligned_cols=93  Identities=12%  Similarity=0.010  Sum_probs=75.9

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceE
Q 005406          111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP--EWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA  188 (698)
Q Consensus       111 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~  188 (698)
                      ..-+|+.|+...+..+|+.|...|..+||+|.+...-+.  .-+...+|+.++|++++|+.+ -..++...++++.++.+
T Consensus       107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tv  185 (438)
T COG1541         107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTV  185 (438)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcE
Confidence            345899999999999999999999999998877766221  116788999999999999988 34567788999999999


Q ss_pred             EEecccchHHHHhhhh
Q 005406          189 IFCIPQTLNTLLSFIS  204 (698)
Q Consensus       189 v~~~~~~~~~~~~~~~  204 (698)
                      |.+.++..-.+.+...
T Consensus       186 I~~tps~~l~lae~~~  201 (438)
T COG1541         186 IAATPSYLLYLAEEAE  201 (438)
T ss_pred             EEEChHHHHHHHHHHH
Confidence            9999987766655443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=86.17  E-value=7.6  Score=42.11  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             CCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 005406          105 DGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP--EWLIVDHACSAYSYISVPLYDTLGPDAVKYV  180 (698)
Q Consensus       105 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~i  180 (698)
                      .|.+|..  -.+|..++...+..++..+...|+++||++......+.  ......+++...|+.++++.... .+.+...
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            5555543  34577777766677777888889999998877655442  22234677889999999987754 5778899


Q ss_pred             HhhccceEEEecccchHHHHh
Q 005406          181 VNHAEIEAIFCIPQTLNTLLS  201 (698)
Q Consensus       181 l~~~~~~~v~~~~~~~~~~~~  201 (698)
                      |++.++.++++.+.....+..
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999998877665543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=84.99  E-value=9.8  Score=41.62  Aligned_cols=92  Identities=13%  Similarity=0.092  Sum_probs=67.6

Q ss_pred             CCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 005406          105 DGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE--WLIVDHACSAYSYISVPLYDTLGPDAVKYV  180 (698)
Q Consensus       105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~i  180 (698)
                      .|.++.  ...+|..++...+...+..+...|+.+||++.+..+.+..  .....+|+...|+.++|...   .+....+
T Consensus        95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~  171 (445)
T TIGR03335        95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI  171 (445)
T ss_pred             CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence            444443  3457889998888888888888999999999888766542  23456788999999887653   2345678


Q ss_pred             HhhccceEEEecccchHHH
Q 005406          181 VNHAEIEAIFCIPQTLNTL  199 (698)
Q Consensus       181 l~~~~~~~v~~~~~~~~~~  199 (698)
                      +++.++.++++.......+
T Consensus       172 i~~~~~t~l~~~ps~ll~L  190 (445)
T TIGR03335       172 IESYRPTGIVASVFKLLRL  190 (445)
T ss_pred             HHHhCCCEEEECHHHHHHH
Confidence            8999999998876554433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	698
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-25
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		5e-25
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		9e-23
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-22
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-22
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-22
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-22
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		7e-22
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-21
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-20
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-20
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-20
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-18
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-18
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-16
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-13
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-13
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		7e-13
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-12
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		6e-12
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-11
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		5e-10
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-09
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-09
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-08
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		6e-08
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-07
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-07
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		6e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-05
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		4e-05
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		4e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		3e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		4e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		5e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		5e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		5e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		5e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		5e-04

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 198/495 (40%), Gaps = 75/495 (15%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E+ A    + + L+  GLQ G R+        E L++  A      + +PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + Y +  AE + + C P   + + +  ++         VG   E L   P   G   
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAK---------VGATVETLG--PDGRG--- 134
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
              L   + G S          +D+A I YTSGTTG  KGA L+H NL SN        +
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDIYMSYLPLAHIYER--ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP 351
           F P D+ +  LP+ H +    A+ +     G  +   + D  K++D  A  + T+   VP
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVP 250
Query: 352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG 411
             Y R+                                 Q+P          ++ +   G
Sbjct: 251 TFYTRLL--------------------------------QSP----------RLTKETTG 268
Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
             R   SG++PL  D         G  V+E YG TET+   S    GD + G VG   P 
Sbjct: 269 HXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPG 328
Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
              ++ D PE       +  PRG+I    V+GP VF+GY++   +T+     DG+  TGD
Sbjct: 329 VSARVTD-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGD 382
Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCL 585
           +G     G + I+ R K++  +  G  V P++IE+       V++  + G     F   +
Sbjct: 383 LGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGV 441
Query: 586 VAIVAVDPDVLKDWA 600
            A+V  D     D A
Sbjct: 442 TAVVVRDKGATIDEA 456

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 198/460 (43%), Gaps = 64/460 (13%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY +V    ++I +     G+ +   + L L N PE+++   A S     +        P
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
             +      +  + I    + ++     I  + +   +V+V   D    S+P   G    
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDK----IKPLQNDDGVVIVCIDDNE--SVPIPEGCLRF 203
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSL 290
           + L   +   S         P+D+  + Y+SGTTG PKG +LTH  L+++VA    G + 
Sbjct: 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 291 MVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFYQGDNLKLMDDL-AVLKPTIFP 348
            + F+  D+ +  LP+ HIY   +  +  +  G A+       + L+ +L    K T+ P
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAP 323
Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            VP +   I        K+S T +  L +                               
Sbjct: 324 MVPPIVLAI-------AKSSETEKYDLSS------------------------------- 345
Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIIS-----AIDKGDNLS 462
               +R + SGA+PL  ++ D +   F   ++ +GYGMTE   +++     A +     S
Sbjct: 346 ----IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G  G+     E+K+VD    +  S +QP   GEIC+RG  + +GY  N   T E ID DG
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           WLHTGDIGL      L I+DR K + K  +G  VAP ++E
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELE 497

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 57/319 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++ K  +G  V P ++E+V
Sbjct: 442 SLIKY-KGYQVPPAELESV 459

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 57/319 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++ K  +G  V P ++E+V
Sbjct: 442 SLIKY-KGYQVPPAELESV 459

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 57/319 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++ K  +G  V P ++E+V
Sbjct: 442 SLIKY-KGYQVPPAELESV 459

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 197/475 (41%), Gaps = 102/475 (21%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY +V    + + SGL   G+Q+G  I L+L + PE+++                  LG 
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLA----------------FLGA 94
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
                ++  A        P +    L+  ++     L++      E +      S VK++
Sbjct: 95  SHRGAIITAAN-------PFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 235 S---------YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                     +    +Q   +  P     P+D+  + Y+SGTTG PKG +LTH  LI++V
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 286 A----GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG--------FYQGDNL 333
           A    G +  + F+  D+ +  LP+ HIY   N I+    G+ VG        F  G  L
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIYA-LNSIM--LCGLRVGAPILIMPKFEIGSLL 264
Query: 334 KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393
            L++   V   +I P VP +   I                                 ++P
Sbjct: 265 GLIEKYKV---SIAPVVPPVMMSI--------------------------------AKSP 289
Query: 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS--- 449
               D+   + +R         + SG +PL  ++ D ++  F   ++ +GYGMTE     
Sbjct: 290 D--LDKHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVL 339
Query: 450 --CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY 507
             C+  A +  D   G  G+     E+K+VD         +QP   GEIC+RG  + +GY
Sbjct: 340 AMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGY 396
Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
             +   T   ID +GWLHTGDIG       L I+DR K + K  +G  VAP ++E
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 450

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 186/472 (39%), Gaps = 91/472 (19%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY EV    + +  GL   G+  G R+     N    L    A      +       L P
Sbjct: 49  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
             + Y++NHAE + +   P  L  + +   E+ +V   VV+   DE  P           
Sbjct: 109 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM---DEKAPE---------- 155
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--V 292
            YL  +        P   P+      + YT+GTTG PKG V +H  L+ +    SL+   
Sbjct: 156 GYLAYEEALGEEADPVRVPE-RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 214
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
                D+ +  +P+ H+    N     Y    VG  Q                + P  PR
Sbjct: 215 ALSEKDVVLPVVPMFHV----NAWCLPYAATLVGAKQ----------------VLPG-PR 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           L     A +       G      FTA   +             +W  L      E  G R
Sbjct: 254 LDP---ASLVELFDGEGVT----FTAGVPT-------------VW--LALADYLESTGHR 291
Query: 413 VRFM-----GSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS-----------AID 456
           ++ +     G  A+P S  +  F ++  G +V +GYG+TETS ++            + +
Sbjct: 292 LKTLRRLVVGGSAAPRS-LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348
Query: 457 KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGYYKNE 511
           +   L    G P P   +++ D        E +P P+     GE+ ++GP +  GYY NE
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNE 401
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
             TR  +  DG+  TGDI +W   G ++I DR K++ K + GE+++   +EN
Sbjct: 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLEN 452

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/463 (22%), Positives = 185/463 (39%), Gaps = 68/463 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E       +   +  +GL    RI +   N  ++ +             P  D   
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK- 232
              +   +N ++   +F   + L  +L+   ++P +  I+++  K ++        G + 
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQS 163
Query: 233 LISYLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVA 286
           + +++        +   F P    + + IA I  +SG+TG PKG  L H       S+  
Sbjct: 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 287 GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVL 342
                 Q  P    +S +P  H +     +  +  G  V     F +   L+ + D  + 
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF 402
              + P++   + +                                     S + D+   
Sbjct: 284 SALLVPTLFSFFAK-------------------------------------STLIDKYDL 306
Query: 403 NKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNL 461
           + + E        + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+ 
Sbjct: 307 SNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDK 358
Query: 462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD 521
            G VG   P  E K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID D
Sbjct: 359 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GWLH+GDI  W       I+DR K++ K  +G  VAP ++E++
Sbjct: 416 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI 457

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/463 (22%), Positives = 185/463 (39%), Gaps = 68/463 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E       +   +  +GL    RI +   N  ++ +             P  D   
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK- 232
              +   +N ++   +F   + L  +L+   ++P +  I+++  K ++        G + 
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQS 163
Query: 233 LISYLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVA 286
           + +++        +   F P    + + IA I  +SG+TG PKG  L H       S+  
Sbjct: 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 287 GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVL 342
                 Q  P    +S +P  H +     +  +  G  V     F +   L+ + D  + 
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF 402
              + P++   + +                                     S + D+   
Sbjct: 284 SALLVPTLFSFFAK-------------------------------------STLIDKYDL 306
Query: 403 NKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNL 461
           + + E        + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+ 
Sbjct: 307 SNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDK 358
Query: 462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD 521
            G VG   P  E K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID D
Sbjct: 359 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GWLH+GDI  W       I+DR K++ K  +G  VAP ++E++
Sbjct: 416 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI 457

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/463 (22%), Positives = 185/463 (39%), Gaps = 68/463 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E       +   +  +GL    RI +   N  ++ +             P  D   
Sbjct: 56  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 115
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK- 232
              +   +N ++   +F   + L  +L+   ++P +  I+++  K ++        G + 
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQS 168
Query: 233 LISYLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVA 286
           + +++        +   F P    + + IA I  +SG+TG PKG  L H       S+  
Sbjct: 169 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 228
Query: 287 GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVL 342
                 Q  P    +S +P  H +     +  +  G  V     F +   L+ + D  + 
Sbjct: 229 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 288
Query: 343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF 402
              + P++   + +                                     S + D+   
Sbjct: 289 SALLVPTLFSFFAK-------------------------------------STLIDKYDL 311
Query: 403 NKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNL 461
           + + E        + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+ 
Sbjct: 312 SNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDK 363
Query: 462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD 521
            G VG   P  E K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID D
Sbjct: 364 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKD 420
Query: 522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GWLH+GDI  W       I+DR K++ K  +G  VAP ++E++
Sbjct: 421 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI 462

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 194/481 (40%), Gaps = 76/481 (15%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E       +   +  +GL    RI +   N  ++ +             P  D   
Sbjct: 56  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYN 115
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK- 232
              +   +N ++   +F   + L  +L+   ++P +  I+++  K ++        G + 
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQS 168
Query: 233 LISYLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVA 286
           + +++        +   F P    + + IA I  +SG+TG PKG  L H  L    S+  
Sbjct: 169 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHAR 228
Query: 287 GFSLMVQFYPSDIYMSYLPLAH---IYERANQIVSVYYGVAV-GFYQGDNLKLMDDL--- 339
                 Q  P    +S +P  H   ++     ++S +  V +  F +   L+ + D    
Sbjct: 229 DPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQ 288
Query: 340 -AVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD 398
            A+L PT+F  + +                                         S + D
Sbjct: 289 SALLVPTLFSFLAK-----------------------------------------STLID 307
Query: 399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDK 457
           +   + + E        + SG +PLS +V + +   F    + +GYG+TET+  I    K
Sbjct: 308 KYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPK 359
Query: 458 GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV 517
           GD+  G VG   P  E K+VD+        +Q   RGE+ VRGP++  GY  N   T  +
Sbjct: 360 GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNAL 416
Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
           ID DGWLH+GDI  W       I+DR K++ K  +G  VAP ++E++  +   +    + 
Sbjct: 417 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFDAGVA 475
Query: 578 G 578
           G
Sbjct: 476 G 476

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 168/402 (41%), Gaps = 67/402 (16%)
Query: 189 IFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQ 248
           +FC  + L  +L    ++P +  IV++  +++++          + S+++       +  
Sbjct: 160 VFCSKRALQKILGVQKKLPIIQKIVILDSREDYM------GKQSMYSFIESHLPAGFNEY 213
Query: 249 PFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVAGFSLMVQFYPSDIYMS 302
            + P    +    A I  +SG+TG PKG  LTH N+    S+        Q  P    ++
Sbjct: 214 DYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILT 273
Query: 303 YLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
            +P  H +     +  +  G  +     F +   L+ + D  +    + P++   + +  
Sbjct: 274 VIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK-- 331
Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                              S + D+   + + E        + S
Sbjct: 332 -----------------------------------STLVDKYDLSNLHE--------IAS 348
Query: 419 GASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL 476
           G +PL+ +V + +   F    + +GYG+TET+  I    +G D+  G  G   P    K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG 536
           VD+        +Q   RGE+CV+GP++ +GY  N   T  +ID DGWLH+GDI  +   G
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDG 465
Query: 537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
              I+DR K++ K  +G  V P ++E++  +  F+    + G
Sbjct: 466 YFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAG 506

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 142/353 (40%), Gaps = 59/353 (16%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWA 600
             G  V P +IE+       V++  + G     F   + A+V  D     D A
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEA 456

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 150/369 (40%), Gaps = 64/369 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQGIKF 607
             G  V P +IE+       V++  + G     F   + A V     + +++A S+ I  
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVV----LXREFAPSE-ILA 458
Query: 608 EDLEQLCND 616
           E+L     D
Sbjct: 459 EELXAFVXD 467

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 56/328 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             G  V P +IE+       V++  + G
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIG 431

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 135/328 (41%), Gaps = 49/328 (14%)
Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A + YTSGTTG PKGAV+    L + +   +   Q+   D+ +  LPL H++     I
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 317 VS-VYYGVAVG----FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
           +  +  G +V     F      + ++D A    T+   VP +Y+RI       + A   L
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGA----TMLFGVPTMYHRI----AETLPADPEL 267
Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
            + L  A                                   R + SG++ L     + +
Sbjct: 268 AKALAGA-----------------------------------RLLVSGSAALPVHDHERI 292
Query: 432 KVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
               G +V+E YGMTET    S    G+  +G VG P P  E++LV+       + D   
Sbjct: 293 AAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDG-E 351
Query: 492 PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551
             GEI VRGP +F  Y      T      DG+  TGD+ +  P G ++I+ RK      +
Sbjct: 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS 411
Query: 552 QGEYVAPEKIENVYAKCKFVLQCFIYGD 579
            G  +   +IEN   +   V +  + G+
Sbjct: 412 GGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 109/483 (22%), Positives = 190/483 (39%), Gaps = 68/483 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           MTY +++A        L   G+ KG R+ L + N  E+  + +  +    ++VP+   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              V ++++ +  + +             I   PS  +I  +  + +   ++    G   
Sbjct: 104 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 150
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           ++  +L+S     P   C    +D   I YTSGTTG PKG V TH ++ S  + ++  + 
Sbjct: 151 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
               D  +  LP+ H+      I S   GV  +   Q D  K+   +   +  I  +VP 
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           + N +                                 Q P          +  E     
Sbjct: 268 ILNFMR--------------------------------QVP----------EFAELDAPD 285
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
            R+  +G +P+ P+ +  +      +V++GY +TE SC    +   ++     GS   A 
Sbjct: 286 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 343
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
                DV         + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG  
Sbjct: 344 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 400
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV 589
              G L I DR K++  ++ GE V P +IE+V      V +  + G   + +     AIV
Sbjct: 401 DDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV 459
Query: 590 AVD 592
             D
Sbjct: 460 VAD 462

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 115/504 (22%), Positives = 191/504 (37%), Gaps = 59/504 (11%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TYGE+    +   S L   G+    RI L +++     +          + V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
               Y++ H+   A+      +  +   +  +E     LIV          S P  S  +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIV----------SQPRESEPR 159
Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
           L    +      +          +DIA   Y+SG+TG PKG V TH NL           
Sbjct: 160 LAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANL----------- 208
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
            ++ +++Y    P+  I E  N +V     +   +  G+ L             FP    
Sbjct: 209 -YWTAELYAK--PILGIAE--NDVVFSAAKLFFAYGLGNGLT------------FP---- 247
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
               +  G T  + A     + +F  A   + +  V    P+   + LV   +  R    
Sbjct: 248 ----LSVGATAILMAERPTADAIF--ARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
           +R   S    L  ++ +     FGC++++G G TE   I  +   G    G  G P P  
Sbjct: 302 IRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGY 361
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
           EI+L D  E  +   D     G++ ++GP     Y+ N  ++R    G+ W+ +GD    
Sbjct: 362 EIELRD--EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCR 416
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVD 592
           LP G      R  ++ K++ G+YV+P ++E V  +   VL+  + G      +     V 
Sbjct: 417 LPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFV- 474
Query: 593 PDVLKDWAASQGIKFEDLEQLCND 616
             VLK   A   I  E+L+    D
Sbjct: 475 --VLKREFAPSEILAEELKAFVKD 496

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 161/418 (38%), Gaps = 64/418 (15%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           MTY +++A        L   G+ KG R+ L + N  E+  + +  +    ++VP+   L 
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              V ++++ +  + +             I   PS  +I  +  + +   ++    G   
Sbjct: 90  APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 136
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           ++  +L+S     P   C    +D   I YTSGTTG PKG V TH ++ S  + ++  + 
Sbjct: 137 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
               D  +  LP+ H+      I S   GV  +   Q D  K+   +   +  I  +VP 
Sbjct: 194 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           + N +                                 Q P          +  E     
Sbjct: 254 ILNFMR--------------------------------QVP----------EFAELDAPD 271
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
            R+  +G +P+ P+ +  +      +V++GY +TE SC    +   ++     GS   A 
Sbjct: 272 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 329
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
                DV         + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG
Sbjct: 330 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIG 384

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 156/392 (39%), Gaps = 71/392 (18%)
Query: 188 AIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
           A+F     LNT   F++E  S+ ++ ++    EH                 LQ       
Sbjct: 133 ALFSGDDFLNT---FVTEHSSIRVVQLLNDSGEH----------------NLQDAINHPA 173
Query: 248 QPF-CPPKPED-IATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP 305
           + F   P P D +A    + GTTGTPK    TH +   +V     + QF     Y+  +P
Sbjct: 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIP 233
Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
            AH Y  ++       G    F  G  + L  D +      FP + +    + A +  AV
Sbjct: 234 AAHNYAMSSP------GSLGVFLAGGTVVLAADPSAT--LCFPLIEKHQVNVTALVPPAV 285
Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                    L+        QA++ G++ +++                ++ +  G + LS 
Sbjct: 286 S--------LWL-------QALIEGESRAQL--------------ASLKLLQVGGARLSA 316
Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV-GSPN-PACEIKLVDVPEMN 483
            +   +    GCQ+ + +GM E     + +D       H  G P  P  E+ + D     
Sbjct: 317 TLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD----- 371
Query: 484 YTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
             +E  P P+GE+     RGP  F+GYYK+        D +G+  +GD+    P G + +
Sbjct: 372 --AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429
Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL 572
             R+K+      GE +A E+IEN+  +   V+
Sbjct: 430 QGREKDQINRG-GEKIAAEEIENLLLRHPAVI 460

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 177/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           +Y E+      + +G    G+Q+  R+ + L N  E+  V  A      + V    +   
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
             + Y    AE  A + IP   +            S++P++  I+V G  +E LP     
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                     L ++    P+     K  D+A +  + G+TG  K    TH + I ++   
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
             +     S +Y++ LP+AH Y  ++       GV    Y G  +       VL P+  P
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
             + P L  R    IT  V     +    +  A +S++  + S Q               
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAMV----WMDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
                    +  G +  S +    +K  FGC + + +GM E     + +D  + +  +  
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           G P +P  E ++ D    ++  + +P   G +  RGP   +GYYK E         DG+ 
Sbjct: 354 GKPMSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            TGDI      G + +  R K+      GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 194/480 (40%), Gaps = 84/480 (17%)
Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           E+    K++ SG+   G++KG  +G+ + N  +++   +A    +   VP+        +
Sbjct: 57  EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFEL 116
Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237
           ++++N +E   +  +   L      + E   V  + VVGG+   L  +   SG +    +
Sbjct: 117 EHILNDSEATTL-VVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEV-XDSGSEDFENV 174
Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
           ++  +             ED+A I YT GTTG PKG  LTH NL +N    ++       
Sbjct: 175 KVNPE-------------EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHX 221
Query: 298 DIYMSYLPLAHIYERANQIVSVYYG---VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY 354
           D  +   P  H  E     + V  G   V  G +  +   L +++   K T   +VP   
Sbjct: 222 DTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQE--XLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414
           N     + N +++S     K +  +Y                                ++
Sbjct: 280 NV----LVNTLESSN----KTYDWSY--------------------------------LK 299
Query: 415 FMGSGASPLSPDVMDFL-----KVCFGCQVMEG--YGMTETSCIISA-----IDKGDNLS 462
              +GA P++P +++ L     + C   ++     +G TE    ++      +DK    S
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDK----S 355
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---- 518
              G P    E+K++ + +       +    GEI +RGP +F+GY+K E + +E      
Sbjct: 356 TTQGVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDE 412
Query: 519 DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            G  +  TGD+G     G L   DR K + K  +G  +AP ++E +  K + V    + G
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 193/526 (36%), Gaps = 114/526 (21%)
Query: 122 ARKEIGSG-LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG------- 173
           AR E G+  LL   L+KG R+ L      E++    AC     ++VPL    G       
Sbjct: 56  ARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSW 115
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              ++ ++   +  AI    + L  + +   + P +H++           +LP       
Sbjct: 116 SAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL-----SHAWFKALPEAD---- 166
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MV 292
              + LQ            P P DIA + YTSG+T  P+G ++TH  + +N+   S   +
Sbjct: 167 ---VALQR-----------PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGI 212
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
           +  P D  +S+LP  H       +V             D L+  D         F   P 
Sbjct: 213 KLRPGDRCVSWLPFYH----DXGLVGFLLTPVATQLSVDYLRTQD---------FAXRPL 259
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
            + ++ +     V  +     +L     N K  A    +     W               
Sbjct: 260 QWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA----ELDLSCW--------------- 300
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEG------YGMTETSCIISAIDKG-------- 458
            R  G GA P+S + +     CF     +       YG+ E +  +S  D+         
Sbjct: 301 -RVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEV 359
Query: 459 --DNLSGHVGSPNPACEIKLVD--------VPEMNYTSEDQP------HPRGEICVRGPI 502
             D L     +  P  E + V         +PE      ++          G IC+ GP 
Sbjct: 360 DRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPS 419
Query: 503 VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNIFKLAQGEY 555
           +  GY+ ++V   E I   GWL TGD+G  L G     GR+K  II R +NI+     EY
Sbjct: 420 LXSGYFGDQVSQDE-IAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWP-QDIEY 477
Query: 556 VAPEK--------IENVYAKCKFVL--QCFIYGDSFNSCLVAIVAV 591
           +A ++        I  V A+ K +L  QC I  +     L+  +A 
Sbjct: 478 IAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAA 523

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 117/528 (22%), Positives = 207/528 (39%), Gaps = 93/528 (17%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K  T+ ++     +  +  + HG+ KG  + L L +R ++            I+VP    
Sbjct: 85  KIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 172 LGPDAVKYVVNHAEIEAIFCI-----PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           L    + Y +  A ++ I CI     P+ ++   +   +IP       VGG         
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKK--AKVGGD-------V 195
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
               +     L+  S     P      K EDI  + ++SGT G PK  ++ H N  +   
Sbjct: 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDN--TYPL 251
Query: 287 GFSLMVQFYPS--DIYMSYLPLAHIYERA------NQIVSVYYGVAVGFYQGDNLK---L 335
           G  L  +++ +  D  + Y      + +        Q ++   G AV  Y  D  +   +
Sbjct: 252 GHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA---GCAVFVYDYDRFEAKNM 308
Query: 336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395
           ++  +    T F + P +Y  +             ++E L    +++ K A+V+G+    
Sbjct: 309 LEKASKYGVTTFCAPPTIYRFL-------------IKEDLSHYNFSTLKYAVVAGE---- 351
Query: 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI 455
                                     PL+P+V +      G ++MEG+G TET   I+  
Sbjct: 352 --------------------------PLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385
Query: 456 DKGDNLSGHVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVR----GPI-VFQGYYK 509
              +   G +G P P  +I+L+D    +    E+     GEI +      P+ +F  Y K
Sbjct: 386 PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE-----GEIVINTMEGKPVGLFVHYGK 440
Query: 510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK 569
           +  +T E    DG+ HTGD+      G L  + R  +I K + G  V P ++E+   +  
Sbjct: 441 DPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHP 498
Query: 570 FVLQCFIYG--DSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCN 615
            VL+C I G  D     ++    V   + KD+  S  +K E  + + N
Sbjct: 499 AVLECAITGVPDPVRGQVIKATIV---LTKDYTPSDSLKNELQDHVKN 543

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 175/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           +Y E+      + +G    G+Q+  R+ + L N  E+  V  A      + V    +   
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
             + Y    AE  A + IP   +            S++P++  I+V G  +E LP     
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                     L ++    P+     K  D+A +  + G+TG  K    TH + I ++   
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
             +     S +Y++ LP AH Y  ++       GV    Y G  +       VL P+  P
Sbjct: 215 VEVCWLDHSTVYLAALPXAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
             + P L  R    IT  V     +    +  A +S++  + S Q               
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAXV----WXDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
                    +  G +  S +    +K  FGC + + +G  E     + +D  + +  +  
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           G P +P  E ++ D    ++  + +P   G +  RGP   +GYYK E         DG+ 
Sbjct: 354 GKPXSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            TGDI      G + +  R K+      GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 180/450 (40%), Gaps = 65/450 (14%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V   C     I +P    +    + Y +  ++ +AI    
Sbjct: 95  GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           + +  + +  SE PS+ + ++V  K        S  G   +++ +L ++  S+       
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             ++ + I +TSGT+G PK A  ++ +L       +       SDI  +      I    
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
             ++  +   A  F     L   D L +LK     S P     I + +   +     L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
            L +  +   +  +  G++                              L P+ ++  + 
Sbjct: 315 DLSSYKFPHLQNCVTVGES------------------------------LLPETLENWRA 344
Query: 434 CFGCQVMEGYGMTET--SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
             G  + E YG TET  +C++S   K     G++G+     +++++D    +  +   P 
Sbjct: 345 QTGLDIRESYGQTETGLTCMVSKTMKIK--PGYMGTAASCYDVQIID----DKGNVLPPG 398
Query: 492 PRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
             G+I +R  PI    +F GY  N  +T   I GD WL  GD G+    G  + + R  +
Sbjct: 399 TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADD 457
Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           I   + G  + P ++EN   +   V++  +
Sbjct: 458 IIN-SSGYRIGPSEVENALMEHPAVVETAV 486

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 138/330 (41%), Gaps = 60/330 (18%)
Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
            P K  D+A + YTSGTTG PKG +L H        G S +  F+ + + ++        
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEH-------KGISNLKVFFENSLNVTE------K 223
Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
           +R  Q  S+ +                           SV  ++  +  G +  +    T
Sbjct: 224 DRIGQFASISFDA-------------------------SVWEMFMALLTGASLYIILKDT 258
Query: 371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF 430
           + + +    Y ++K+  V    P+      V +   ER+   ++ + +  S  SP +++ 
Sbjct: 259 INDFVKFEQYINQKEITVITLPPT-----YVVHLDPERILS-IQTLITAGSATSPSLVNK 312
Query: 431 LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYTSE 487
            K       +  YG TET+   +         GH   +G+P    +I +VD   +   S 
Sbjct: 313 WKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV 369
Query: 488 DQPHPRGEICVRGPIVFQGYYKN-EVQTREVID-----GDGWLHTGDIGLWLPGGRLKII 541
            +    GE+C+ G  + +GY+K  E+ +++ +D     G+    TGD   WL  G ++ +
Sbjct: 370 GEA---GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
            R  N  K+ +G  V  E++E++  K  ++
Sbjct: 427 GRIDNQVKI-RGHRVELEEVESILLKHMYI 455

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 178/493 (36%), Gaps = 93/493 (18%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           ++Y E+      I   L  HG  KG  + LY     E +I    V  A +AY    +P+ 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY----LPVD 545
Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  D + Y++  +   A  C+                    +      E    LP T 
Sbjct: 546 PKLPEDRISYMLADS---AAACL--------------------LTHQEMKEQAAELPYT- 581
Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
           G  L    Q + +  +S  P     P D A I YTSGTTG PKG + TH N+   V    
Sbjct: 582 GTTLFIDDQTRFEEQAS-DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS 349
            M  F   D ++S              VS Y   A  F    ++     L +        
Sbjct: 641 YMA-FSDQDTFLS--------------VSNYAFDAFTFDFYASMLNAARLIIADEHTLLD 685
Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
             RL + I     N + A+  L   L  A  +  K                         
Sbjct: 686 TERLTDLILQENVNVMFATTALFNLLTDAGEDWMK------------------------- 720
Query: 410 GGR-VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI---DKGDNLSGH- 464
           G R + F G  AS   P V   L++    +++  YG TE +   +A    D  D++S   
Sbjct: 721 GLRCILFGGERAS--VPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP 778
Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI----- 518
           +G P     + +     +N  S+ QP    GE+C+ G  V +GY      T+E       
Sbjct: 779 IGKPISNASVYI-----LNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPF 833
Query: 519 -DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             G+    TGD+  WLP G ++   R  +  K+ +G  +  E+IE    +   V    + 
Sbjct: 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVV 892
Query: 578 GDSFNSCLVAIVA 590
            D   S   +I A
Sbjct: 893 ADRHESGDASINA 905

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 170/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
           + P++   V+    +  +  +P  LN  L  + ++E+     +   V+  G+        
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + + GYG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNGYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 435 FGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSP-NPACEIKLVDVPEMNYTSEDQPHP 492
             C++ + +GM E     + +D  D  +    G P +   EIK+VD        + +  P
Sbjct: 331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-------EQYREVP 383
Query: 493 RGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
            GEI     RGP  F GYY++     +V D D + ++GD+    P G L+++ R K+   
Sbjct: 384 EGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQIN 443
Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIV 589
              GE +A E+IE      K +L   ++ +  ++ LVAIV
Sbjct: 444 RG-GEKIASEEIE------KLIL---LHPEVMHAALVAIV 473

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 169/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
           + P++   V+    +  +  +P  LN  L  + ++E+     +   V+  G+        
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNAYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 31/232 (13%)
Query: 424 SPDVMD-FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           +P+ ++ F   C        +G +ETS + S      +     G P     + +VD    
Sbjct: 282 TPETIERFEATCPNATFWATFGQSETSGL-STFAPYRDRPKSAGRPLFWRTVAVVD---- 336
Query: 483 NYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
              +ED+P P GE   I +RGP VF+GY+ N   T+     +GW HTGD+G +   G L 
Sbjct: 337 ---AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLF 392
Query: 540 IIDR--KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDP- 593
              R  +K + K   GE V P ++E    +   +    + G     ++  + A+    P 
Sbjct: 393 YAGRAPEKELIKTG-GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451
Query: 594 -----DVLKDWAASQGIKFED------LEQLCNDPRARAAVLAEMNAVGKEG 634
                D L ++ AS   +++       +E L  D +      A   A G+EG
Sbjct: 452 ESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 146/382 (38%), Gaps = 74/382 (19%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNIYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 146/382 (38%), Gaps = 74/382 (19%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNIYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 196/517 (37%), Gaps = 121/517 (23%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY ++    K I + L   G + G R+ L        +     C     I+VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
            A + +++ A+       P  +  +   I +  +           + L + P    +  I
Sbjct: 98  PAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTA-----------DELNTNPKFLKIPAI 146
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
           +   ++    SS QP    K  DIA + YTSG+T  PKG  ++H NL+ N+    +   F
Sbjct: 147 ALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLN--KIFTSF 203
Query: 295 YPSD--IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
           + +D  I  S+LP  H                             D  ++   + P    
Sbjct: 204 HXNDETIIFSWLPPHH-----------------------------DXGLIGCILTP---- 230
Query: 353 LYNRIYAGITNAVKAS--GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG 410
               IY GI  A+  S    L+  L    + +K +A +SG +P+  +D  V  +IRE   
Sbjct: 231 ----IYGGI-QAIXXSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCV-KRIREEKK 283
Query: 411 GRVRFMG-----SGASPLSPDVMD-----FLKVCFGCQVM-EGYGMTETSCIISAIDKG- 458
             +         +GA P+  +  +     F +  F  +     YG+ E + +++    G 
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------------------DNLSGH---VGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
                                DN  G    V S NP  E+K++D   +     DQ    G
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQ---VG 400
Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGD--------GWLHTGDIGLWLPGGRLKIIDRKKN 546
           EI V+   V +GY+    +TR    G          +L TGD+G +L    L +  R K+
Sbjct: 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRIKD 459
Query: 547 IFKLAQGEYVAPEKIE---------NVYAKC-KFVLQ 573
           +  +  G+   P+ IE         +V  KC  FV+Q
Sbjct: 460 LI-IIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQ 495

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 143/382 (37%), Gaps = 74/382 (19%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +   PL H+               VGF+      L +D
Sbjct: 178 AESRVLFXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE     +++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TXPDAVLETVHQHLPGEKVNIYGTTEAX---NSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 XRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  +   ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 174/442 (39%), Gaps = 92/442 (20%)
Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDT-LGPDAVKYVVNHAEIEAIFC-IPQTLN 197
           R+GLY+ N  + +I+ HAC   + I + + +T L P+ +   +   +++ IFC +P  L 
Sbjct: 50  RVGLYIDNSIQSIILIHAC-WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKP-- 255
                  +I S+  I   G        L +T G+          Q  +S +   P +   
Sbjct: 109 GF-----QIVSLDDIEFAGRDITTNGLLDNTMGI----------QYDTSNETVVPKESPS 153
Query: 256 ---------EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL 306
                    +DIA+I +TSGTTG  K    T  N  ++  G    + F     ++S LP+
Sbjct: 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPI 213
Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            HI   +  + +V  G  V     D       L ++K           N     I+   +
Sbjct: 214 YHISGLSVLLRAVIEGFTVRIV--DKFNAEQILTMIK-----------NERITHISLVPQ 260
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
               L ++     YN +K  +                               G + LS  
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL-------------------------------GGAKLSAT 289
Query: 427 VMDFLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLS-GHVGSPNPACEIKLVDVPEMNY 484
           +++   + +   +   +GMTET S  ++A  +  +     VG P+   ++K+        
Sbjct: 290 MIE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKI-------- 340
Query: 485 TSEDQPHPRGEICVRGPIVFQGY-YKNEVQ-TREVIDGDGWLHTGDIGLWLPGGRLKIID 542
                    GE+ ++G  V  GY Y  ++  T E    +G+ +TGDI      G + I D
Sbjct: 341 -KNPNKEGHGELMIKGANVMNGYLYPTDLTGTFE----NGYFNTGDIAEIDHEGYVMIYD 395
Query: 543 RKKNIFKLAQGEYVAPEKIENV 564
           R+K++  ++ GE + P +IE V
Sbjct: 396 RRKDLI-ISGGENIYPYQIETV 416

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 171/455 (37%), Gaps = 75/455 (16%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V   C     I +P    +    + Y +  ++ +AI    
Sbjct: 95  GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           + +  + +  SE PS+ + ++V  K        S  G   +++ +L ++  S+       
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             ++ + I +TSGT+G PK A  ++ +L       +       SDI  +      I    
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
             ++  +   A  F     L   D L +LK     S P     I + +   +     L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQT--PSKM--WDRLVFNKIRERLGGR---VRFMGSGASPLSPD 426
            L +  +   +  +  G++  P  +  W       IRE  G     +  M S    + P 
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
            M     C+  Q+++              DKG+ L                         
Sbjct: 375 YMGTAASCYDVQIID--------------DKGNVLP------------------------ 396
Query: 487 EDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
              P   G+I +R  PI    +F GY  N  +T   I GD WL  GD G+    G  + +
Sbjct: 397 ---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFM 452
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            R  +I   + G  + P ++EN   +   V++  +
Sbjct: 453 GRADDIIN-SSGYRIGPSEVENALMEHPAVVETAV 486

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGH-----VGSPNPACEIKLVDVPEMNYTSEDQP 490
             +++  YG TE +  +SAI+    +  +     +G P P     ++D      +S +Q 
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ- 348
Query: 491 HPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIG------LWLPGGRL 538
              GEI V GP V +GY  N  +T E      G    HTGDIG      + L GGRL
Sbjct: 349 ---GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           F GY      T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE 
Sbjct: 362 FVGYLNQPEATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
           V      V +  +       +G S  +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 153/387 (39%), Gaps = 63/387 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
           ++P P    K ++   I YTSG+TG PKG  +T+  L+S     V  F+L        ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           ++  P +                        +L +MD        I+PS+      +  G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
              A+      R K LF +   S  Q   S  TPS     L+     E +   ++ F+  
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN-LSGHVGSPNPAC--EIK 475
           G    +      ++      +M  YG TE +  ++ I   +  L  +   P   C  + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
           L+ + E    + D    +GEI + GP V  GY  +   T +   +IDG+    TGD G +
Sbjct: 330 LLIMKEDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
           +  G L    R     KL  G  +  E+IE+    C +V    I     G+ ++  L  +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIKFEDLEQLCN 615
           V  +    K++  +  IK E  E+L N
Sbjct: 446 VPGEHSFEKEFKLTSAIKKELNERLPN 472

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 153/387 (39%), Gaps = 63/387 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
           ++P P    K ++   I YTSG+TG PKG  +T+  L+S     V  F+L        ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           ++  P +                        +L +MD        I+PS+      +  G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
              A+      R K LF +   S  Q   S  TPS     L+     E +   ++ F+  
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS-PNPAC--EIK 475
           G    +      ++      +M  YG TE +  ++ I   + +     S P   C  + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
           L+ + E    + D    +GEI + GP V  GY  +   T +   +IDG+    TGD G +
Sbjct: 330 LLIMKEDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
           +  G L    R     KL  G  +  E+IE+    C +V    I     G+ ++  L  +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIKFEDLEQLCN 615
           V  +    K++  +  IK E  E+L N
Sbjct: 446 VPGEHSFEKEFKLTSAIKKELNERLPN 472

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
           P  ED+A + YTSGTTG PKG  + H N+++ +AG   +  F   D ++ +  L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLS 226

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 60/355 (16%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD 337
           G  L+     F  +  ++P DIY                   +    VG+  G +  L  
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY-------------------WCTADVGWVTGHSYLLYG 319
Query: 338 DLAVLKPTI-FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
            LA    T+ F  VP      +       +     +  +   A  + +  +  G      
Sbjct: 320 PLACGATTLMFEGVPN-----WPTPARMCQVVDKHQVNILYTAPTAIRALMAEG------ 368
Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTET 448
            D+ +    R  L    R +GS   P++P+  ++     G   C V++ +  TET
Sbjct: 369 -DKAIEGTDRSSL----RILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	698
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-82
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-82
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	8e-82
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-81
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-80
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-79
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-76
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	5e-76
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-75
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-75
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-74
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-71
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-71
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	9e-71
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-70
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-47
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-43
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-37
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-22
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-16
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	8e-21
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-17
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-20
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-14
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-14
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	6e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	8e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-04

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  268 bits (688), Expect = 2e-82
 Identities = 123/539 (22%), Positives = 207/539 (38%), Gaps = 99/539 (18%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E+ A    + + L+  GLQ G R+        E L++  A      + +PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + Y +  AE + + C P   + + +  +++ +    +   G+               
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGS------------- 135

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
              L   + G S          +D+A I YTSGTTG  KGA+L+H NL SN        +
Sbjct: 136 ---LTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL----KPTI 346
           F P D+ +  LP+ H +      V       V  +   ++  +   D   +L    + T+
Sbjct: 193 FTPDDVLIHALPIYHTHG---LFV----ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245

Query: 347 FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
              VP  Y R+                                 Q+P          ++ 
Sbjct: 246 LMGVPTFYTRLL--------------------------------QSP----------RLT 263

Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG 466
           +   G +R   SG++PL  D         G  V+E YGMTET+   S    GD + G VG
Sbjct: 264 KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323

Query: 467 SPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
              P    ++ D PE   T ++ P    G I V+GP VF+GY++   +T+     DG+  
Sbjct: 324 PALPGVSARVTD-PE---TGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFI 379

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFN 582
           TGD+G     G + I+ R K++  +  G  V P++IE+       V++  + G     F 
Sbjct: 380 TGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFG 438

Query: 583 SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND-------PRARAAVLAE--MNAVGK 632
             + A+V  D            I    +    +        P+ +   + +   N +GK
Sbjct: 439 EGVTAVVVRDKG--------ATIDEAQVLHGLDGQLAKFKMPK-KVIFVDDLPRNTMGK 488

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  269 bits (691), Expect = 3e-82
 Identities = 117/521 (22%), Positives = 207/521 (39%), Gaps = 83/521 (15%)

Query: 57  NVYRSARSPLTLVDRFPDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMT 115
           N+              P +P E G+        +E Y     LG     +   G     +
Sbjct: 9   NIVVG---------PKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTG--VDYS 54

Query: 116 YGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPD 175
           Y E       +G  L  +GL    RI L   N  E+ I   A         P  +     
Sbjct: 55  YAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLR 114

Query: 176 AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
            + + +  ++   +F   + L+ +++    + ++  IV++  K ++           L +
Sbjct: 115 ELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC------LDT 168

Query: 236 YLQLQSQGCSSPQPFCPPK---PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
           +++  +        F   +    E +A I  +SG+TG PKG  LTH N+++  +     +
Sbjct: 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228

Query: 293 ---QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPT 345
              Q  P    ++ +P  H +     +  +  G  V     F +   LK + D    K T
Sbjct: 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD---YKCT 285

Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
               VP L+  +                          K  ++         ++   + +
Sbjct: 286 SVILVPTLFAILN-------------------------KSELL---------NKYDLSNL 311

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH 464
                     + SG +PLS +V + +   F    V +GYG+TET+  I    +GD+  G 
Sbjct: 312 V--------EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGA 363

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGW 523
            G   P  + K++D  +   T +    + RGE+CV+GP++ +GY  N   T+E+ID +GW
Sbjct: 364 SGKVVPLFKAKVID-LD---TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419

Query: 524 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           LHTGDIG +       I+DR K++ K  +G  V P ++E+V
Sbjct: 420 LHTGDIGYYDEEKHFFIVDRLKSLIK-YKGYQVPPAELESV 459

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  267 bits (686), Expect = 8e-82
 Identities = 108/589 (18%), Positives = 198/589 (33%), Gaps = 120/589 (20%)

Query: 70  DRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
               D  ++  +           P                  +  TY +++A        
Sbjct: 7   HHVDDDDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADV 59

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI 189
           L   G+ KG R+ L + N  E+  + +  +    ++VP+   L    V ++++ +  + +
Sbjct: 60  LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVV 119

Query: 190 FCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
                +   + +  ++      +    G D     L S +                  +P
Sbjct: 120 IYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA----------------DEP 163

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
                 +D   I YTSGTTG PKG V TH ++ S  + ++  +     D  +  LP+ H+
Sbjct: 164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHV 223

Query: 310 YERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
                 I S   GV +     F   D  K+   +   +  I  +VP + N +        
Sbjct: 224 AALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGAVPAILNFMR------- 273

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                    Q P          +  E      R+  +G +P+  
Sbjct: 274 -------------------------QVP----------EFAELDAPDFRYFITGGAPMPE 298

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMN 483
            ++         +V++GY +TE+    + +   D L   G  G      ++ +    +  
Sbjct: 299 ALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGV 356

Query: 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
                + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG     G L I DR
Sbjct: 357 ----IREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDR 411

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD--------- 594
            K++     GE V P +IE+V      V +            VA++ + PD         
Sbjct: 412 LKDMIISG-GENVYPAEIESVIIGVPGVSE------------VAVIGL-PDEKWGEIAAA 457

Query: 595 --VLKDWAASQGIKFEDLEQLCND-------PRARAAVLAE--MNAVGK 632
             V      S+    + + + C         P+ +         N  GK
Sbjct: 458 IVVADQNEVSE----QQIVEYCGTRLARYKLPK-KVIFAEAIPRNPTGK 501

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  267 bits (684), Expect = 4e-81
 Identities = 116/518 (22%), Positives = 197/518 (38%), Gaps = 76/518 (14%)

Query: 57  NVYRSARSPLTLVDRFPDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMT 115
           N+ +            P +P E GT  +    A++ Y      GT    D  +     +T
Sbjct: 6   NIKKG---------PAPFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIE--VNIT 52

Query: 116 YGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPD 175
           Y E       +   +  +GL    RI +   N  ++ +             P  D     
Sbjct: 53  YAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNER 112

Query: 176 AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
            +   +N ++   +F   + L  +L+   ++P +  I+++  K ++       S    ++
Sbjct: 113 ELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF---QSMYTFVT 169

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA---GFSLMV 292
                        P    + + IA I  +SG+TG PKG  L H       +         
Sbjct: 170 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFP 348
           Q  P    +S +P  H +     +  +  G  V     F +   L+ + D    K     
Sbjct: 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD---YKIQSAL 286

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            VP L++                            K  ++         D+   + +   
Sbjct: 287 LVPTLFSFFA-------------------------KSTLI---------DKYDLSNLH-- 310

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
                  + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+  G VG 
Sbjct: 311 ------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGK 364

Query: 468 PNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
             P  E K+VD  +   T +    + RGE+CVRGP++  GY  N   T  +ID DGWLH+
Sbjct: 365 VVPFFEAKVVD-LD---TGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GDI  W       I+DR K++ K  +G  VAP ++E++
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIK-YKGYQVAPAELESI 457

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  265 bits (680), Expect = 1e-80
 Identities = 104/524 (19%), Positives = 192/524 (36%), Gaps = 89/524 (16%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
            Y+     L     +P       L D    A E + +   + +      +    + M + 
Sbjct: 6   KYKIGFPSLY----YPKIS----LADRIDAAAEKFGEKTAIISAEPKFPSEFP-ESMNFL 56

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           E+    K++ SG+   G++KG  +G+ + N  ++++  +A    +   VP+        +
Sbjct: 57  EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFEL 116

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237
           ++++N +E   +             + +      + VVGG+   L  +            
Sbjct: 117 EHILNDSEATTLVVHSMLYENFKPVLEKTGVER-VFVVGGEVNSLSEV------------ 163

Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
            + S           P  ED+A I YT GTTG PKG +LTH NL +N    ++       
Sbjct: 164 -MDSGSEDFENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM 221

Query: 298 DIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
           D  +  +P+ H  E     + V  G        F Q    + ++     K T   +VP  
Sbjct: 222 DTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEK---YKGTFSWAVPPA 278

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
            N                               +V+            ++ +        
Sbjct: 279 LN------------------------------VLVNTLES--SNKTYDWSYL-------- 298

Query: 414 RFMGSGASPLSPDVMDFLKVCFG-------CQVMEGYGMTETSCIISAIDK-GDNLSGHV 465
           +   +GA P++P +++ L             +  + +GMTE   +++       + S   
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI----DG 520
           G P    E+K++   E      +      GEI +RGP +F+GY+K E + +E       G
Sbjct: 359 GVPMSDIELKVIS-LE---DGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
             +  TGD+G     G L   DR K + K  +G  +AP ++E +
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIK-YKGYTIAPFELEAL 457

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  262 bits (672), Expect = 1e-79
 Identities = 126/528 (23%), Positives = 210/528 (39%), Gaps = 102/528 (19%)

Query: 57  NVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
            ++RS    + +       P+   LH   +  + N+     L     ++G  G     TY
Sbjct: 7   FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANG--DVYTY 52

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            +V    + + SGL   G+Q+G  I L+L + PE+++     S    I         P  
Sbjct: 53  ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112

Query: 177 VKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236
           +      +  + +         +  F  E   V ++ V    D              + +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDGC------------LHF 159

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMV 292
            +L      +  P     P+D+  + Y+SGTTG PKG +LTH  LI++VA    G +  +
Sbjct: 160 SELTQAD-ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL------K 343
            F+  D+ +  LP+ HIY       ++   +  G   G  + +M   +  ++L      K
Sbjct: 219 YFHSEDVILCVLPMFHIY-------ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
            +I P VP +   I                          K   +         D+   +
Sbjct: 272 VSIAPVVPPVMMSIA-------------------------KSPDL---------DKHDLS 297

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIIS-----AIDK 457
            +R         + SG +PL  ++ D         ++ +GYGMTE   +++     A + 
Sbjct: 298 SLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349

Query: 458 GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTRE 516
            D   G  G+     E+K+VD PE   T    P +  GEIC+RG  + +GY  +   T  
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLPRNQPGEICIRGDQIMKGYLNDPEATSR 405

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            ID +GWLHTGDIG       L I+DR K + K  +G  VAP ++E +
Sbjct: 406 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIK-YKGFQVAPAELEAL 452

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  253 bits (649), Expect = 1e-76
 Identities = 94/582 (16%), Positives = 183/582 (31%), Gaps = 127/582 (21%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQ 136
           +L        +                           TY  +      +   L      
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQES------------YTYQNLYCEASLLAKRL---KAY 46

Query: 137 KGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL 196
           +  R+GLY+ N  + +I+ HAC   +     +   L P+ +   +   +++ IFC     
Sbjct: 47  QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLE 106

Query: 197 NTL--LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                +  + +I      +   G  ++   +   +     S   +  +   S        
Sbjct: 107 LRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-----SNETVVPKESPSNILNTSFN 161

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +DIA+I +TSGTTG  K    T  N  ++  G    + F     ++S LP+ HI   + 
Sbjct: 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV 221

Query: 315 QIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
            + +V  G  V      +  +++  +   + T    VP+  N +             +++
Sbjct: 222 LLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL-------------MQQ 268

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLK 432
            L                                     ++ +  G + LS  +++  L+
Sbjct: 269 GLHEPY--------------------------------NLQKILLGGAKLSATMIETALQ 296

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQP 490
             +   +   +GMTET             +    VG P+   ++K+ +            
Sbjct: 297 --YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN---------PNK 345

Query: 491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
              GE+ ++G  V  GY           + +G+ +TGDI      G + I DR+K++   
Sbjct: 346 EGHGELMIKGANVMNGYLYPT-DLTGTFE-NGYFNTGDIAEIDHEGYVMIYDRRKDLII- 402

Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD-----------VLKDW 599
           + GE + P +IE V  +   +                 V   PD           V +  
Sbjct: 403 SGGENIYPYQIETVAKQFPGISDA------------VCVGH-PDDTWGQVPKLYFVSES- 448

Query: 600 AASQGIKFEDLEQLCND-------PRARAAVLAE--MNAVGK 632
                I    L    +        P+     +      + GK
Sbjct: 449 ----DISKAQLIAYLSKHLAKYKVPK-HFEKVDTLPYTSTGK 485

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  252 bits (645), Expect = 5e-76
 Identities = 113/546 (20%), Positives = 193/546 (35%), Gaps = 125/546 (22%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E++AA     +G     +    R+ ++     E  +   A       +VPL    G
Sbjct: 49  LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + ++++ +    +   P                          E  P+L +   V +
Sbjct: 104 DKELAHILSDSAPSLVLAPPDA------------------------ELPPALGALERVDV 139

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
                          P       D A + YTSGTTG PKGAV+    L + +   +   Q
Sbjct: 140 DV-------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG--------FYQGDNLKLMDDLAVLKPT 345
           +   D+ +  LPL H++     ++ +   +  G        F      + ++D      T
Sbjct: 193 WTGEDVLVQGLPLFHVH---GLVLGILGPLRRGGSVRHLGRFSTEGAARELND----GAT 245

Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
           +   VP +Y+RI       + A   L + L                              
Sbjct: 246 MLFGVPTMYHRI----AETLPADPELAKAL------------------------------ 271

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465
                   R + SG++ L     + +    G +V+E YGMTET    S    G+  +G V
Sbjct: 272 -----AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTV 326

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G P P  E++LV+  +    +       GEI VRGP +F  Y      T      DG+  
Sbjct: 327 GVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385

Query: 526 TGDIGLWLPGGRLKIIDRK-KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
           TGD+ +  P G ++I+ RK  ++ K   G  +   +IEN   +   V +  + G      
Sbjct: 386 TGDMAVRDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444

Query: 582 NSCLVAIV-------AVDPDVLKDWAASQ--------GIKFEDLEQLCNDPRARAAVLAE 626
              +VA +             L D  A++         +++  L+ +   PR        
Sbjct: 445 GERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRY--LDAV---PR-------- 491

Query: 627 MNAVGK 632
            N +GK
Sbjct: 492 -NDMGK 496

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  250 bits (640), Expect = 5e-75
 Identities = 112/546 (20%), Positives = 181/546 (33%), Gaps = 101/546 (18%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
            TYGE+    +   S L   G+    RI L +++     +          + V     L 
Sbjct: 49  TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
           P    Y++ H+   A+      +  +   +         ++V    E  P L        
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPL----- 163

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV- 292
               +      +          +DIA   Y+SG+TG PKG V TH NL      ++  + 
Sbjct: 164 ---FEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220

Query: 293 QFYPSDIYMSYLPLAHIYERANQIV-SVYYGVAVGFYQG--DNLKLMDDLAVLKPTIFPS 349
               +D+  S   L   Y   N +   +  G              +   L   +PT+F  
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280

Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
           VP LY  +                                          LV   +  R 
Sbjct: 281 VPTLYANM------------------------------------------LVSPNLPARA 298

Query: 410 GGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN 469
              +R   S    L  ++ +     FGC++++G G TE   I  +   G    G  G P 
Sbjct: 299 DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358

Query: 470 PACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
           P  EI+L D             P    G++ ++GP     Y+ N  ++R       W+ +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLV 586
           GD    LP G      R  ++ K++ G+YV+P ++E V  +   VL+             
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEA------------ 457

Query: 587 AIVAVDPD---------VLKDWAASQGIKFEDLEQLCNDPRARAA---------VLAE-- 626
           A+V VD           VLK   A   I  E+L+      + R A          + +  
Sbjct: 458 AVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFV---KDRLAPHKYPRDIVFVDDLP 514

Query: 627 MNAVGK 632
             A GK
Sbjct: 515 KTATGK 520

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  249 bits (638), Expect = 6e-75
 Identities = 97/497 (19%), Positives = 170/497 (34%), Gaps = 97/497 (19%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQ 136
           TL D +      +PD   +   G R            +T+ +  A  + + SGLL  G+ 
Sbjct: 7   TLADVYRRNAALFPDRTAFMVDGVR------------LTHRDYLARAERLASGLLRDGVH 54

Query: 137 KGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL 196
            G R+ +   N  E + +  A +    I +P+   L  D + +V+       +       
Sbjct: 55  TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114

Query: 197 NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPE 256
           + +   +  +  V     +G                   +  L S    +P         
Sbjct: 115 DIVAGVLPSLGGVKKAYAIGDGSGPFAP-----------FKDLAS---DTPFSAPEFGAA 160

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D   I +T+   G P+GA+++ GNL+   +      +   +D+ +  LPL H+      +
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220

Query: 317 VSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
                G A      F   D  +   D+   K T+                          
Sbjct: 221 TLQQAGGASVIAAKF---DPAQAARDIEAHKVTVMAEFA----------P---------- 257

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                                  M   ++ ++        +R +    +P + +  +   
Sbjct: 258 -----------------------MLGNIL-DQAAPAQLASLRAVTGLDTPETIERFE--A 291

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
            C        +G +ETS + +     D      G P     + +VD       +ED+P P
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGRPLFWRTVAVVD-------AEDRPLP 343

Query: 493 R---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR--KKNI 547
               GEI +RGP VF+GY+ N   T+     +GW HTGD+G +   G L    R  +K +
Sbjct: 344 PGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKEL 402

Query: 548 FKLAQGEYVAPEKIENV 564
            K   GE V P ++E  
Sbjct: 403 IK-TGGENVYPAEVEGA 418

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  257 bits (658), Expect = 3e-74
 Identities = 130/573 (22%), Positives = 220/573 (38%), Gaps = 97/573 (16%)

Query: 12  AVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDR 71
           +   H  S+                   SQ    +           ++RS    + +   
Sbjct: 4   SHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV---IFRSKLPDIYI--- 57

Query: 72  FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
               P   +LHD     +  +     L     ++G  G     TY +V    ++I +   
Sbjct: 58  ----PNHLSLHDYIFQNISEFATKPCL-----INGPTG--HVYTYSDVHVISRQIAANFH 106

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
             G+ +   + L L N PE+++   A S     +        P  +      +  + I  
Sbjct: 107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIIT 166

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             + ++ +    ++   V  IV +   +    S+P   G    + L   +   S      
Sbjct: 167 EARYVDKIKPLQNDDGVV--IVCIDDNE----SVPIPEGCLRFTELTQSTTEASEVIDSV 220

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYMSYLPLA 307
              P+D+  + Y+SGTTG PKG +LTH  L+++VA    G +  + F+  D+ +  LP+ 
Sbjct: 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280

Query: 308 HIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL------KPTIFPSVPRLYNRIY 358
           HIY       ++   +  G   G  + +M   +   +L      K T+ P VP +   I 
Sbjct: 281 HIY-------ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIA 333

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                    K +           ++   + IR         + S
Sbjct: 334 -------------------------KSSET---------EKYDLSSIR--------VVKS 351

Query: 419 GASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIIS-----AIDKGDNLSGHVGSPNPAC 472
           GA+PL  ++ D         ++ +GYGMTE   +++     A +     SG  G+     
Sbjct: 352 GAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA 411

Query: 473 EIKLVDVPEMNYTSEDQ-PHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
           E+K+VD P+   T +    +  GEIC+RG  + +GY  N   T E ID DGWLHTGDIGL
Sbjct: 412 EMKIVD-PD---TGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
                 L I+DR K + K  +G  VAP ++E +
Sbjct: 468 IDDDDELFIVDRLKELIK-YKGFQVAPAELEAL 499

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  240 bits (615), Expect = 3e-71
 Identities = 82/504 (16%), Positives = 160/504 (31%), Gaps = 96/504 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            L       V+++P    +         + G + ++Y E+      + + L   GL KG 
Sbjct: 31  PLTRILTVGVQSHPHSLAI---------ICGERQLSYIELDRLSTNLATRLAEKGLGKGD 81

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
              + L N  E+ IV  A      + +    +     +   +   + + +    Q     
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS 141

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
               + S      S  +I+++  +                  L        +   F    
Sbjct: 142 NNQFIDSLHDVNLSPEIILMLNHQATDF------------GLLDWIETPAETFVDFSSTP 189

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +++A    + G+TGTPK    TH +   +V   + +     +   +  LP  H +    
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF---- 245

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDD---LAVL------KPTIFPSVPRLYNRIYAGITNAV 365
             +    G     + G  + +  +   L         +  +   VP              
Sbjct: 246 --MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI----MWLEKA 299

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                    Q  S                  ++ +  G +    
Sbjct: 300 AQYKD--------------------QIQS------------------LKLLQVGGASFPE 321

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-NPACEIKLVDVPEMN 483
            +   +     C++ + +GM E     + +D  D       G P +   EIK+VD     
Sbjct: 322 SLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD----- 376

Query: 484 YTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              + +  P    G +  RGP  F GYY++     +V D D + ++GD+    P G L++
Sbjct: 377 --EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
           + R K+      GE +A E+IE +
Sbjct: 435 VGRIKDQI-NRGGEKIASEEIEKL 457

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  240 bits (614), Expect = 3e-71
 Identities = 114/593 (19%), Positives = 184/593 (31%), Gaps = 139/593 (23%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T  D        Y D   +           G    +Y E+      + +G    G+Q+  
Sbjct: 26  TFGDLLRDRAAKYGDRIAI---------TCGNTHWSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
           R+ + L N  E+  V  A      + V    +     + Y    AE  A           
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                    S++P++  I+V G  +E LP                     + P      K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
             D+A +  + G+TG  K    TH + I ++     +     S +Y++ LP+AH Y    
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY---- 236

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDD---LAVL------KPTIFPSVPRLYNRIYAGITNAV 365
                  GV    Y G  + L                K TI   VP L         +A 
Sbjct: 237 --PLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM----VWMDAA 290

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
            +                          S                  ++ +  G +  S 
Sbjct: 291 SSRRD--------------------DLSS------------------LQVLQVGGAKFSA 312

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-NPACEIKLVDVPEMN 483
           +    +K  FGC + + +GM E     + +D  + +  +  G P +P  E ++ D     
Sbjct: 313 EAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD----- 367

Query: 484 YTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
               D+       G +  RGP   +GYYK E         DG+  TGDI      G + +
Sbjct: 368 --DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD------ 594
             R K+      GE VA E++EN       V               A+V++ PD      
Sbjct: 426 EGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD------------AAMVSM-PDQFLGER 471

Query: 595 -----VLKDWAASQGIKFEDLEQLCND--------PRARAAVLAE--MNAVGK 632
                + +D A        +L+    +        P  R   +       VGK
Sbjct: 472 SCVFIIPRDEAPK----AAELKAFLRERGLAAYKIPD-RVEFVESFPQTGVGK 519

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  241 bits (617), Expect = 9e-71
 Identities = 103/559 (18%), Positives = 186/559 (33%), Gaps = 127/559 (22%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E++ A   +   L   G++ G    + L N  E  I   A        V    +  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNT-----LLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
              +    +  E   +    Q         L +F++E  S+ ++ ++    EH       
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEH------- 163

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                 +     +   +      P   +++A    + GTTGTPK    TH +   +V   
Sbjct: 164 ------NLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216

Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD---LAVL--- 342
             + QF     Y+  +P AH Y           G    F  G  + L  D          
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY------AMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 343 ---KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
              +  +   VP   +        A+    +                             
Sbjct: 271 EKHQVNVTALVPPAVSLW----LQALIEGES----------------------------- 297

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI-DKG 458
                 R +L   ++ +  G + LS  +   +    GCQ+ + +GM E     + + D  
Sbjct: 298 ------RAQLA-SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350

Query: 459 DNLSGHVGSP-NPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQT 514
           + +    G P  P  E+ + D        E  P P+   G +  RGP  F+GYYK+    
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403

Query: 515 REVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
               D +G+  +GD+    P G + +  R+K+      GE +A E+IEN+  +   V+  
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENLLLRHPAVIY- 461

Query: 575 FIYGDSFNSCLVAIVAVDPD-----------VLKDWAASQGIKFEDLEQLCND------- 616
                       A+V++  D           V+K+      ++   + +   +       
Sbjct: 462 -----------AALVSM-EDELMGEKSCAYLVVKE-----PLRAVQVRRFLREQGIAEFK 504

Query: 617 -PRARAAVLAE--MNAVGK 632
            P  R   +    + AVGK
Sbjct: 505 LPD-RVECVDSLPLTAVGK 522

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  237 bits (608), Expect = 1e-70
 Identities = 99/611 (16%), Positives = 188/611 (30%), Gaps = 125/611 (20%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+++    A    PD+  L          G    +T+ E+ A  + + + L   GL+   
Sbjct: 3   TVNEMLRRAATRAPDHCAL-----AVPARG--LRLTHAELRARVEAVAARLHADGLRPQQ 55

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ +   N  + +I   A      +   L   L    +  ++   E+ A          +
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ--V 113

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
              I +  S   I+ +G  D      P + G                P      +P   A
Sbjct: 114 ADAIFQSGSGARIIFLG--DLVRDGEPYSYG---------------PPIEDPQREPAQPA 156

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNV--AGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317
            I YTSGTTG PK A++      S V      + ++    ++ +  +PL H+        
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG---FFA 213

Query: 318 SVYYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
            +   +A+         F     +  +  +   + T   + P   +              
Sbjct: 214 VLVAALALDGTYVVVEEF---RPVDALQLVQQEQVTSLFATPTHLDA------------- 257

Query: 370 TLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
                                     +           +L   +R +    + +   V++
Sbjct: 258 --------------------------LAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLE 290

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQ 489
            +      + +  YG TE    +          G   +P    E+++V            
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVR-IGGGVDEIVA 346

Query: 490 PHPRGEICVRGP-IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
               GE+ V      F GY      T E +  DGW  T D+ +W P G ++I+ R  ++ 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI 405

Query: 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQGI 605
             + GE + P +IE V      V +  + G     +   + A V            S   
Sbjct: 406 I-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE----TLSA-- 458

Query: 606 KFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSVENGLLTPTFK 664
             + L+  C                 +  +L  F+  K   ++ + P            K
Sbjct: 459 --DALDTFC-----------------RSSELADFKRPKRYFILDQLP-------KNALNK 492

Query: 665 IKRPQAKERFA 675
           + R Q  ++ +
Sbjct: 493 VLRRQLVQQVS 503

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  175 bits (447), Expect = 1e-47
 Identities = 106/496 (21%), Positives = 171/496 (34%), Gaps = 115/496 (23%)

Query: 87  YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI 146
            A   +         V      G     TY EV    + +  GL   G+  G R+     
Sbjct: 26  RAAALFGR-----KEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 80

Query: 147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI 206
           N    L    A      +       L P  + Y++NHAE + +   P  L  + +   E+
Sbjct: 81  NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 140

Query: 207 PSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPE-DIATICYTS 265
            +V   VV+  K               ++Y +   +  + P       PE     + YT+
Sbjct: 141 KTVQHFVVMDEKAP----------EGYLAYEEALGEE-ADPVRV----PERAACGMAYTT 185

Query: 266 GTTGTPKGAVLTH--------GNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317
           GTTG PKG V +H           + +    S        D+ +  +P+ H     N   
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALS------EKDVVLPVVPMFH----VNAWC 235

Query: 318 SVYYGVAVG--------FYQGDNL-KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS 368
             Y    VG             +L +L D       T    VP     ++  + + ++++
Sbjct: 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGE---GVTFTAGVPT----VWLALADYLEST 288

Query: 369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM 428
           G                                      RL    R +  G S     ++
Sbjct: 289 G-------------------------------------HRLKTLRRLV-VGGSAAPRSLI 310

Query: 429 D-FLKVCFGCQVMEGYGMTETSCIISA---IDKGDNLSGH--------VGSPNPACEIKL 476
             F +   G +V +GYG+TETS ++         ++LS           G P P   +++
Sbjct: 311 ARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV 368

Query: 477 VDVPEMNYTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL 533
            D  E        P      GE+ ++GP +  GYY NE  TR  +  DG+  TGDI +W 
Sbjct: 369 AD-EEGR----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423

Query: 534 PGGRLKIIDRKKNIFK 549
             G ++I DR K++ K
Sbjct: 424 EEGYVEIKDRLKDLIK 439

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  163 bits (414), Expect = 4e-43
 Identities = 82/462 (17%), Positives = 161/462 (34%), Gaps = 72/462 (15%)

Query: 114 MTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTL 172
             + E+S   ++  + L    GLQ+G R+ + L   PEW +V   C     I +P    +
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
               + Y +  ++ +AI    + +  + +  SE PS+ + ++V  K              
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD----------G 183

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
            +++ +L     S+         ++ + I +TSGT+G PK A  ++ +L       +   
Sbjct: 184 WLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSV-YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP 351
               SDI  +      I      ++     G     +                       
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK---------------FDPL 287

Query: 352 RLYNRI--YAGITNAVKASGTLREKLFTA--AYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +   +  Y  I +           +  A   Y              +M   L+   +  
Sbjct: 288 VILKTLSSY-PIKS-----------MMGAPIVY--------------RM---LLQQDLSS 318

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
                ++   +    L P+ ++  +   G  + E YG TET              G++G+
Sbjct: 319 YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT 378

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDG 522
                +++++D  + N      P   G+I +R        +F GY  N  +T   I G  
Sbjct: 379 AASCYDVQIID-DKGN---VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-D 433

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           +   GD G+    G  + + R  +I   + G  + P ++EN 
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSS-GYRIGPSEVENA 474

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  147 bits (374), Expect = 1e-37
 Identities = 123/671 (18%), Positives = 212/671 (31%), Gaps = 179/671 (26%)

Query: 73  PDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
            ++ +  +L D       + P+     +L   +           MTY ++    K I + 
Sbjct: 5   KEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEET--------MTYEQLDQHAKAIAAT 56

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA---VKYVVNHAEI 186
           L   G + G R+ L        +     C     I+VP+Y           + +V +++ 
Sbjct: 57  LQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKP 116

Query: 187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS 246
             +  I   +                       + L + P    +  I+   ++    SS
Sbjct: 117 VIVLMIADHIKKF------------------TADELNTNPKFLKIPAIALESIELNRSSS 158

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL 306
            QP    K  DIA + YTSG+T  PKG +++H NL+ N+             I  S+LP 
Sbjct: 159 WQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPP 217

Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            H          +   +    Y G    +M       P  F   P  +      + +  K
Sbjct: 218 HHDM-------GLIGCILTPIYGGIQAIMMS------PFSFLQNPLSW------LKHITK 258

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKM--WD----RLVFNKIRERLGGRVRFMGSGA 420
              T      + + N      V      K    D       FN               GA
Sbjct: 259 YKAT-----ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFN---------------GA 298

Query: 421 SPLSPDVMD-FLKVC----FGCQVME-GYGMTETSCIISAIDKG----------DNLSGH 464
            P+  + M+ F +      F  +     YG+ E + +++    G          +    H
Sbjct: 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDH 358

Query: 465 ---------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYY 508
                          V S NP  E+K++D P+   T       + GEI V+   V +GY+
Sbjct: 359 RVHFADDNSPGSYKLVSSGNPIQEVKIID-PD---TLIPCDFDQVGEIWVQSNSVAKGYW 414

Query: 509 KNEVQTREVI--------DGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNIFKLAQG 553
               +TR               +L TGD+G          GR+K  II   KN +     
Sbjct: 415 NQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHY----- 469

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQL 613
               P+ IE                        +++      +    A+  I+ E   +L
Sbjct: 470 ----PQDIEF-----------------------SLMHSPLHHVLGKCAAFVIQEEHEYKL 502

Query: 614 ---------CNDPRARAAVLAEM-NAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTF 663
                      D  A+  +  E+   V +  QL        + L+P   ++     T + 
Sbjct: 503 TVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLE----VHTIVLIP-LKAM---PHTTSG 554

Query: 664 KIKRPQAKERF 674
           KI+R   ++  
Sbjct: 555 KIRRNFCRKHL 565

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  100 bits (251), Expect = 3e-22
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 8/188 (4%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ ++     +  +  + HG+ KG  + L L +R ++            I+VP    L  
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 175 DAVKYVVNHAEIEAIFCIP--QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
             + Y +  A ++ I CI        +    +E   + L     G D     +       
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID------ 201

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
               L+  S     P      K EDI  + ++SGT G PK     +   + ++       
Sbjct: 202 FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ 261

Query: 293 QFYPSDIY 300
                 ++
Sbjct: 262 NVEDDGLH 269

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 80.3 bits (199), Expect = 8e-16
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 22/128 (17%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSG---HVGS--- 467
           ++      PL+P+V +      G ++MEG+G TET   I+               GS   
Sbjct: 344 KYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIA------TFPWMEPKPGSIGK 397

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG----PI-VFQGYYKNEVQTREVIDGDG 522
           P P  +I+L+D  +       +    GEI +      P+ +F  Y K+  +T E     G
Sbjct: 398 PTPGYKIELMD-RDGR---LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-G 452

Query: 523 WLHTGDIG 530
           + HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 36/249 (14%)

Query: 73  PDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
             H  + +L           P    + ++      DG       +T+ ++      +   
Sbjct: 18  GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVA---ITLTWSQLYRRTLNVAQE 74

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP---DAVKYVVNHAEI 186
           L   G   G R+ +      E+++          I+VPL    G    +    V++ +  
Sbjct: 75  LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133

Query: 187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS 246
            AI      ++ ++  ++  P      ++      +  L   +                +
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSII-----EVDLLDLDAP---------------N 173

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA------GFSLMVQFYPSDIY 300
              F   +    A + YTSG+T TP G V++H N+  N                 P+   
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233

Query: 301 MSYLPLAHI 309
           +S+LP  H 
Sbjct: 234 VSWLPFYHD 242

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 49/176 (27%)

Query: 411 GRVRFMGSGASPLSPDVMD-FLKVCFGCQ-----VMEGYGMTETSCIISAIDKG------ 458
           G +  + SG+  +    +  F             +   Y + E +  ++    G      
Sbjct: 311 GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETV 370

Query: 459 ----DNLSGH---------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICV 498
               ++LS                    P     +++VD  +   T  + P    GEI V
Sbjct: 371 DFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SD---TCIECPDGTVGEIWV 425

Query: 499 RGPIVFQGYYKNEVQTREVI-----------DGDGWLHTGDIGLWLPGGRLKIIDR 543
            G  V  GY++   ++                   WL TGD G     G++ II R
Sbjct: 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 74.0 bits (181), Expect = 3e-14
 Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 39/295 (13%)

Query: 247 PQPFCPP--KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYL 304
                P     +    +  + GTTG PK  V     + + ++      Q  P     + L
Sbjct: 80  VANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTL 139

Query: 305 PLA----HIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
                  HI    N+  ++  G             +D   V +         +    +  
Sbjct: 140 AAIPTGPHIVGAINKERALRLGGMFFSID------IDPRWVKRSLSEGDTATVRKYTHHL 193

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLV-FNKIRERLGGRVRFMGSG 419
           +            +                 TP  +   L+   ++  ++   +  +  G
Sbjct: 194 VDQVQNTLMNQDIRFLVT-------------TPP-VLRELLKRPEVVLQMKQSLAQITLG 239

Query: 420 ASPLSPDVMDFL--KVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGSPNPACEIKL 476
            + L+ D + F+  ++   C+    YG T    +  S +   ++      S +P     +
Sbjct: 240 GTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV 299

Query: 477 VDVPEMNYTSEDQPH-PRGEICV---RGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           VD      T++   +  RG + V        +    + +   R +    G+    
Sbjct: 300 VD-SI---TAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDR 349

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 53/329 (16%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK----PEDIATICYTSGTTGTPKGAV 275
            +   +      K++           S Q              A + YTSG+TGTPKG  
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVR 194

Query: 276 LTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL 335
           ++  NL S    +         ++    L L     +   + S        F        
Sbjct: 195 VSRHNLSSFSDAW----GKLIGNVAPKSLELGG-VGKFLCLAS------RAF-------- 235

Query: 336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395
             D+ + +  +F +          G+        ++ + L       +     +G  PS 
Sbjct: 236 --DVHIGE--MFLA-------WRFGLCAVTGERLSMLDDL--PRTFRELGVTHAGIVPS- 281

Query: 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETS--CIIS 453
           + D+       E     + ++G G   ++P             ++  YG TE +  C   
Sbjct: 282 LLDQTGLVP--EDAPH-LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338

Query: 454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKN 510
            I    +    +G P       ++          ++   +   GE+ + G +V  GY   
Sbjct: 339 RILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMAGELVIEGSLVANGYLNR 391

Query: 511 EVQTREVIDGDGWLH-TGDIGLWLPGGRL 538
                        ++ TGDI        +
Sbjct: 392 PDAKGFCDINGRKMYRTGDIVRMDADSSI 420

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 57.5 bits (140), Expect = 1e-08
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 71/333 (21%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
             + ++     V++     ++ +  ++     P K  D+A + YTSGTTG PKG +L H 
Sbjct: 148 HLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTTGNPKGTMLEHK 205

Query: 280 NLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDL 339
            + +    F   +     D    +  ++                   F          D 
Sbjct: 206 GISNLKVFFENSLNVTEKDRIGQFASIS-------------------F----------DA 236

Query: 340 AVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
           +V +  +F +       +  G +  +    T+ + +    Y ++K+  V    P+     
Sbjct: 237 SVWE--MFMA-------LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPT-YVVH 286

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISA 454
           L      ER+   ++ + +  S  SP +++  K       +  YG TE     T+ + + 
Sbjct: 287 L----DPERILS-IQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATK 339

Query: 455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNE 511
              G ++   +G+P    +I +VD          Q       GE+C+ G  + +GY+K  
Sbjct: 340 ETIGHSVP--IGAPIQNTQIYIVD-------ENLQLKSVGEAGELCIGGEGLARGYWKRP 390

Query: 512 VQTRE--VID----GDGWLHTGDIGLWLPGGRL 538
             T +  V +    G+    TGD   WL  G +
Sbjct: 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNI 423

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 209 VHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTT 268
              ++      E    LP T     I       +  S P       P D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619

Query: 269 GTPKGAVLTHGNLI 282
           G PKG + TH N+ 
Sbjct: 620 GKPKGNITTHANIQ 633

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 18/80 (22%), Positives = 26/80 (32%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
              L        ++ +S  +L      S       K  +   I YTSG+TG PKG  ++ 
Sbjct: 106 AAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISA 165

Query: 279 GNLISNVAGFSLMVQFYPSD 298
            NL S               
Sbjct: 166 ANLQSFTDWICADFPVSGGK 185

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 54.4 bits (132), Expect = 8e-08
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
               P+  +  G+  +    L +   S  +P      + IA I ++SGTTG PK    TH
Sbjct: 131 CSTTPTPAN--GLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTH 186

Query: 279 GNLI 282
             + 
Sbjct: 187 AGIT 190

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 219 DEHLP-SLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT 277
            E  P ++   S V L      +             K +D   I +TSGTTG PKG  ++
Sbjct: 108 IEEFPLTIEGISLVSLSEIESAKLAEMPYE-RTHSVKGDDNYYIIFTSGTTGQPKGVQIS 166

Query: 278 HGNLIS 283
           H NL+S
Sbjct: 167 HDNLLS 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 63/515 (12%), Positives = 136/515 (26%), Gaps = 177/515 (34%)

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLN-------TLLS--------FISEI--PSVHLIVVVG 216
            D  K +++  EI+ I      ++       TLLS        F+ E+   +   ++   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 217 GKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCP---PKPEDIATICYTSGTTG---- 269
             ++  PS+ +        Y++ + +  +  Q F      + +    +            
Sbjct: 99  KTEQRQPSMMTR------MYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----RQALLEL 147

Query: 270 TPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGF 327
            P   VL  G     V G   + +      D+ +SY     +  +      +++ + +  
Sbjct: 148 RPAKNVLIDG-----VLGSGKTWVA----LDVCLSYKVQCKMDFK------IFW-LNLKN 191

Query: 328 YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387
                  +++ L  L   I P+     +               LR  L +  Y   +  +
Sbjct: 192 CNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCL 247

Query: 388 -----VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEG 442
                V         +   +                       +  +       C+++  
Sbjct: 248 LVLLNV--------QNAKAW-----------------------NAFN-----LSCKIL-- 269

Query: 443 YGMTETSCIISAIDKG--DNLSGHVGSPNPACEIKLVDVPE--------------MNYTS 486
             +T T        K   D LS           I L                   ++   
Sbjct: 270 --LT-TR------FKQVTDFLSAAT-----TTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 487 EDQPHPRGEICVRGPIV---FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
           +D P    E+    P          ++ + T      D W H                D+
Sbjct: 316 QDLPR---EVLTTNPRRLSIIAESIRDGLATW-----DNWKHVN-------------CDK 354

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKD-WAAS 602
              I + +    + P +   ++       +  ++  S          +   +L   W   
Sbjct: 355 LTTIIESSL-NVLEPAEYRKMF------DRLSVFPPS--------AHIPTILLSLIWFDV 399

Query: 603 QGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLR 637
                 D+  + N     +  L E     KE  + 
Sbjct: 400 ---IKSDVMVVVNKLHKYS--LVEKQ--PKESTIS 427

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
              +   ++P P    K ++   I YTSG+TG PKG  +T+  L+S              
Sbjct: 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG 185

Query: 298 DIYMSYLPLA 307
            ++++  P +
Sbjct: 186 QVFLNQAPFS 195

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
            + P  P   ED   + YTSG+TG PKG   +  
Sbjct: 252 TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTA 285

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
           P   P+    ED   I YTSG+TG PKG + T G
Sbjct: 246 PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	698
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.3
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.21
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.93
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.88
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.74
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.58
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.99
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	89.97

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=9e-82  Score=705.43  Aligned_cols=503  Identities=21%  Similarity=0.255  Sum_probs=420.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|+++++++||++|+.+.         .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999653         25699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      |+++|+++||+++.++.+++.+++++++++++|++....     ..+......++.++.++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            999999999999999999999999999999999987532     22233333456666565544311             


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                        .+.++..... .+.+.....++++++|+|||||||.||||++||+++++.+......++++++|++++++|++|.+++
T Consensus       162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~  238 (539)
T 1mdb_A          162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL  238 (539)
T ss_dssp             --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred             --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence              0111111111 1112234578999999999999999999999999999998887777889999999999999999998


Q ss_pred             HH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      ..  .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+.....                         
T Consensus       239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  293 (539)
T 1mdb_A          239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------  293 (539)
T ss_dssp             HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred             hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence            85  788999999999987 79999999999999999999999999887642210                         


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSP  468 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p  468 (698)
                                       ....+++|.+++||+++++++.+++.+.+|+++++.||+||++..++..... ....+++|+|
T Consensus       294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p  356 (539)
T 1mdb_A          294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP  356 (539)
T ss_dssp             -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred             -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence                             0011589999999999999999999998999999999999976443321111 1234689999


Q ss_pred             CCC-cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCe
Q 005406          469 NPA-CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (698)
Q Consensus       469 ~~~-~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~  547 (698)
                      +++ .+++|+| +++..++.++   .|||+|+||++++|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+
T Consensus       357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~  432 (539)
T 1mdb_A          357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ  432 (539)
T ss_dssp             SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred             cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence            976 5899999 5566666665   8999999999999999999999999988999999999999999999999999999


Q ss_pred             EecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL  624 (698)
Q Consensus       548 ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  624 (698)
                      ||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++....         .+                 .
T Consensus       433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~~-----------------~  485 (539)
T 1mdb_A          433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------A  485 (539)
T ss_dssp             EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------H
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------CC-----------------H
Confidence            996 899999999999999999999999998543   46889999987421         11                 4


Q ss_pred             HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhc
Q 005406          625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE  684 (698)
Q Consensus       625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~  684 (698)
                      ++|++++++..|+.|++|+.|++++++|      +|++||++|++|++.|.++|+++|++
T Consensus       486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          486 AELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             HHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence            5666777644599999999999999999      99999999999999999999999974

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.1e-80  Score=696.38  Aligned_cols=502  Identities=25%  Similarity=0.354  Sum_probs=423.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      +...|++++|.++++++||++|+++.   +.    .+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus        19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   91 (536)
T 3ni2_A           19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF   91 (536)
T ss_dssp             CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            34689999999999999999999763   21    257999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+.+..... ..+ ++.++...         .  ....
T Consensus        92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---------~--~~~~  158 (536)
T 3ni2_A           92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP---------D--GCLH  158 (536)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC---------T--TCEE
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC---------C--CccC
Confidence            999999999999999999999999999999999999988776665544322 222 44443311         1  1255


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----ccccCCCcEEEEcCChhhHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~  311 (698)
                      +.++...... ..+.....++++++|+|||||||.||||++||+++++.+.....    .+++.++|++++++|++|.++
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  237 (536)
T 3ni2_A          159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA  237 (536)
T ss_dssp             THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred             HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence            6666654322 22344567899999999999999999999999999888765433    356789999999999999999


Q ss_pred             HHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      +.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+....                          
T Consensus       238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  291 (536)
T 3ni2_A          238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL--------------------------  291 (536)
T ss_dssp             HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG--------------------------
T ss_pred             HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc--------------------------
Confidence            976 678899999999987 7999999999999999999999999888652100                          


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhccc-----CCCCCCCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAI-----DKGDNLSG  463 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~-----~~~~~~~~  463 (698)
                                      .....+++|.+++||+++++++.+++++.+ ++++++.||+||++++++..     ...+...+
T Consensus       292 ----------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  355 (536)
T 3ni2_A          292 ----------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG  355 (536)
T ss_dssp             ----------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred             ----------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence                            001115899999999999999999999988 89999999999998765443     22335678


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+|+++++++|+|++++..++.++   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus       356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR  432 (536)
T 3ni2_A          356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR  432 (536)
T ss_dssp             CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence            99999999999999977777777665   899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      +||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .++.++|+|++.+..        ..+              
T Consensus       433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~--------------  489 (536)
T 3ni2_A          433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--------QAT--------------  489 (536)
T ss_dssp             CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred             ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--------CCC--------------
Confidence            9999998 89999999999999999999999999843   346789999987632        111              


Q ss_pred             HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                         .++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|+++|+.
T Consensus       490 ---~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          490 ---EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             ---HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred             ---HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence               356677775 7899999999999999999      999999999999998753

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.2e-80  Score=694.77  Aligned_cols=508  Identities=22%  Similarity=0.308  Sum_probs=397.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      ...|+.++|+++++++||++|+.+.   ++.  .+..+++||+||+++++++|++|++.|+++||+|+|+++|+++|+++
T Consensus        17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   93 (549)
T 3g7s_A           17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT   93 (549)
T ss_dssp             CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            3578999999999999999999886   321  23347899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      +|||+++|+++|||++.++.+++.+++++++++++|++......+.......+ +..++..+..              ..
T Consensus        94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~  158 (549)
T 3g7s_A           94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN  158 (549)
T ss_dssp             HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred             HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence            99999999999999999999999999999999999999988777776665544 4555555431              13


Q ss_pred             eHHHHHhcCCCCCCCCCCCCC-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHH
Q 005406          235 SYLQLQSQGCSSPQPFCPPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (698)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (698)
                      ++.++...+.... +.....+ +++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~  237 (549)
T 3g7s_A          159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG  237 (549)
T ss_dssp             CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred             CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence            5667666543322 2223344 8999999999999999999999999999998888888999999999999999999998


Q ss_pred             HHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          314 NQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      ..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......                          
T Consensus       238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------  291 (549)
T 3g7s_A          238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------------------  291 (549)
T ss_dssp             HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred             HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence            8888999999999987 7999999999999999999999999998874321100                          


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH----hC---CceecccCcchhcchhcccCCCC-CCCCC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG---CQVMEGYGMTETSCIISAIDKGD-NLSGH  464 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g---~~l~~~YG~TE~~~~~~~~~~~~-~~~~~  464 (698)
                                    ....+++|.+++||+++++++.+.+.+.    ++   +++++.||+||++++++...... ...++
T Consensus       292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  357 (549)
T 3g7s_A          292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT  357 (549)
T ss_dssp             --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred             --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence                          0001589999999999999999998887    56   88999999999998776654433 45688


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc--CCC--ceecCcEEEEecCCcEEE
Q 005406          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID--GDG--WLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~--~~g--w~~TGDlg~~~~~G~l~i  540 (698)
                      +|+|+++++++|+|++++..++.++   .|||+|+||++++|||++|+.|++.|.  .+|  ||+|||+|++|+||.|+|
T Consensus       358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~  434 (549)
T 3g7s_A          358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF  434 (549)
T ss_dssp             CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred             ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence            9999999999999977777777665   899999999999999999999999983  567  999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP  617 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (698)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.++..      ...            
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------~~~------------  495 (549)
T 3g7s_A          435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------GKV------------  495 (549)
T ss_dssp             EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------TSC------------
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------CcC------------
Confidence            9999999997 899999999999999999999999998654   467899999876410      001            


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                           ..++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.+.
T Consensus       496 -----~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          496 -----DEEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             -----CHHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred             -----CHHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence                 1456777775 7899999999999999999      9999999999999988653

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.3e-80  Score=693.73  Aligned_cols=509  Identities=23%  Similarity=0.283  Sum_probs=426.2

Q ss_pred             CCCCHHH-HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHD-NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...|+.+ +|.++++++ |++|+.+.   +    ..+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus        23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   94 (548)
T 2d1s_A           23 GSAGTQLRKYMERYAKL-GAIAFTNA---V----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV   94 (548)
T ss_dssp             SCHHHHHHHHHHHHHHH-TCEEEEET---T----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred             CcCcHHHHHHHhhhccc-CCceEEEc---C----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence            3458999 888899999 99999752   1    1256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+......++....++.++....       ..  .+..
T Consensus        95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~  165 (548)
T 2d1s_A           95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC  165 (548)
T ss_dssp             HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred             HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence            99999999999999999999999999999999999998877766665555554555666543210       00  1235


Q ss_pred             HHHHHhcCCCCCCCCCCCC-----C-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCCh
Q 005406          236 YLQLQSQGCSSPQPFCPPK-----P-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPL  306 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl  306 (698)
                      |+++...+.....+.....     + +++++|+|||||||.||||++||+++.+.+......   ++++++|++++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  245 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF  245 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence            6776654322101111122     4 899999999999999999999999999888776665   678899999999999


Q ss_pred             hhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      +|.+++.. .+.++ .|+++++.+ +++..+++.|+++++|+++++|+++..|.+....                     
T Consensus       246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------  303 (548)
T 2d1s_A          246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL---------------------  303 (548)
T ss_dssp             TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG---------------------
T ss_pred             HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc---------------------
Confidence            99999987 45566 999999887 7999999999999999999999999988752100                     


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCCC
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSG  463 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~  463 (698)
                                           .....+++|.+++||+++++++.+++.+.+ ++.+++.||+||++++++.........+
T Consensus       304 ---------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  362 (548)
T 2d1s_A          304 ---------------------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG  362 (548)
T ss_dssp             ---------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred             ---------------------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence                                 000115899999999999999999999988 6889999999999877766544446678


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+|+++++++|+|++++..++.++   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus       363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR  439 (548)
T 2d1s_A          363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR  439 (548)
T ss_dssp             CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred             CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence            99999999999999977777776665   899999999999999999999999998899999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      +||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|+++++.        ..+              
T Consensus       440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~~--------------  496 (548)
T 2d1s_A          440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NMT--------------  496 (548)
T ss_dssp             GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred             ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CCC--------------
Confidence            9999997 899999999999999999999999998653   46789999987632        111              


Q ss_pred             HHHHHHHHHHHHhCCCCCcceee-EEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFEYAK-AVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~~p~-~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                         .++|+++++ .+|+.|++|+ .|++++++|      +|++||++|++|++.|++.|++|
T Consensus       497 ---~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          497 ---EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             ---HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred             ---HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence               355666775 7899999999 999999999      99999999999999999888765

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.4e-80  Score=694.17  Aligned_cols=503  Identities=22%  Similarity=0.288  Sum_probs=390.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|+++++++||++|+.+.   +.  ++.+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999753   21  2357899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|+++||+++.++.+++.+++++++++++|++.+....+......++.++.++.++....        .  ....++
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~  161 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYE  161 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHH
Confidence            999999999999999999999999999999999998887777666666677777776654221        0  124566


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc--ccccccCCCcEEEEcCChhhHHHHHHH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (698)
                      ++......    .....++++++|+|||||||.||||++||+++++.....  ...++++++|++++++|++|.+++...
T Consensus       162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~  237 (541)
T 1v25_A          162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP  237 (541)
T ss_dssp             HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred             HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence            66543221    134567999999999999999999999999998776652  345678899999999999999999778


Q ss_pred             HHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      +.+++.|+++++.+  .++..+++.++++++|+++++|+++..|.+.....                             
T Consensus       238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------  288 (541)
T 1v25_A          238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-----------------------------  288 (541)
T ss_dssp             HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------
T ss_pred             HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----------------------------
Confidence            88999999999986  59999999999999999999999999987643211                             


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CCC
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLS  462 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~~  462 (698)
                                   ....+++|.+++||+++++++.++| +.+|+++++.||+||++++++......           ...
T Consensus       289 -------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (541)
T 1v25_A          289 -------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK  354 (541)
T ss_dssp             -------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred             -------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence                         0011589999999999999999999 568999999999999987766543321           134


Q ss_pred             CCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEc
Q 005406          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~G  542 (698)
                      +++|+|+++++++|+| ++++.++.+. ++.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus       355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G  432 (541)
T 1v25_A          355 AKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD  432 (541)
T ss_dssp             TSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred             CCCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence            7899999999999999 5555554321 1379999999999999999999999999889999999999999999999999


Q ss_pred             cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA  619 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (698)
                      |+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++....         .              
T Consensus       433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~--------------  488 (541)
T 1v25_A          433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P--------------  488 (541)
T ss_dssp             ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------------------------------
T ss_pred             cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------------
Confidence            99999996 899999999999999999999999998654   46889999876211         0              


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                         ..+++++++++.+|+.|++|+.|++++++|      +|++||++|++|++.|+++
T Consensus       489 ---~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          489 ---TPEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             ---------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred             ---CHHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHh
Confidence               134455666533899999999999999999      9999999999999987654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.8e-80  Score=694.12  Aligned_cols=508  Identities=20%  Similarity=0.258  Sum_probs=410.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      .....+++|+++++++||++|+.+.   +. .++.+.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus        54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l  129 (580)
T 3etc_A           54 NFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML  129 (580)
T ss_dssp             SCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred             cchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4455669999999999999999875   32 2346789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch--HHHHhhhhcCCce-eEEEEeCCCCCCCCCCCCCCCceE
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL--NTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      ||+++|+++||+++.++.+++.+++++++++++|++.+..  ..+.+....++.+ ..++.++....          ..+
T Consensus       130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  199 (580)
T 3etc_A          130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL----------EGW  199 (580)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC----------TTC
T ss_pred             HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc----------ccc
Confidence            9999999999999999999999999999999999987654  5555555555554 44555543210          123


Q ss_pred             eeHHHHHhcCCCCCCCC---CCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHH
Q 005406          234 ISYLQLQSQGCSSPQPF---CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY  310 (698)
Q Consensus       234 ~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  310 (698)
                      .++.+.+.........+   ....++|+++|+|||||||.||||+++|.++++.+.......++.+++++++.+|++|..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (580)
T 3etc_A          200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK  279 (580)
T ss_dssp             EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred             ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence            56777665443322111   246789999999999999999999999999988877666667889999999999999999


Q ss_pred             HHHH-HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406          311 ERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (698)
Q Consensus       311 ~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (698)
                      +.+. .+.++..|+++++.+   +++..+++.|+++++|+++++|+++..|.+...                        
T Consensus       280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------  335 (580)
T 3etc_A          280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL------------------------  335 (580)
T ss_dssp             HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC------------------------
T ss_pred             HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc------------------------
Confidence            8876 677899999998873   799999999999999999999999988865200                        


Q ss_pred             HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCcc
Q 005406          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG  466 (698)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG  466 (698)
                                         .....++||.+++||+++++++.++|.+.+|++++++||+||+++.++.........+++|
T Consensus       336 -------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G  396 (580)
T 3etc_A          336 -------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG  396 (580)
T ss_dssp             ----------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred             -------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence                               0011158999999999999999999999899999999999999877766655567789999


Q ss_pred             CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC-----CCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-----~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      +|+|+++++|+| ++++.++.++   .|||+|+|     +++++|||++|+.|++.| .+|||+|||+|++|+||+|+|+
T Consensus       397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~  471 (580)
T 3etc_A          397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV  471 (580)
T ss_dssp             EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred             cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence            999999999999 5567666665   89999997     789999999999999999 6999999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++|+|++.++.          .        ..  
T Consensus       472 GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----------~--------~~--  530 (580)
T 3etc_A          472 GRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----------T--------PS--  530 (580)
T ss_dssp             EESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C--------CC--
T ss_pred             ecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----------C--------CC--
Confidence            999999997 799999999999999999999999998543   46788999988742          0        01  


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                        +.+.++|+++++ ..|+.|++|+.|++++++|      +|++|||+|++|++++++
T Consensus       531 --~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          531 --DSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             --HHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred             --HHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhc
Confidence              233566777775 6799999999999999999      999999999999999875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2e-80  Score=696.55  Aligned_cols=513  Identities=23%  Similarity=0.298  Sum_probs=343.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|.++++++|+++|++...  ++  ...+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   93 (550)
T 3rix_A           18 EDGTAGEQLHKAMKRYALVPGTIAFT--DA--HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL   93 (550)
T ss_dssp             CCSCHHHHHHHHHHHHHTSTTCEEEE--ET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCCceEEEee--ec--CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence            35799999999999999999986321  21  123679999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....+......++.+..++.++.....         ....++
T Consensus        94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  164 (550)
T 3rix_A           94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM  164 (550)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred             HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence            99999999999999999999999999999999999999888888777778888888877653211         123456


Q ss_pred             HHHHhcCCCCC------CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChh
Q 005406          237 LQLQSQGCSSP------QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA  307 (698)
Q Consensus       237 ~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~  307 (698)
                      .++........      .+.....++++++|+|||||||.||||++||+++++.+......   .++.++|++++++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  244 (550)
T 3rix_A          165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH  244 (550)
T ss_dssp             HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred             HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence            66654332211      11122346889999999999999999999999999887766554   5678999999999999


Q ss_pred             hHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406          308 HIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (698)
Q Consensus       308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (698)
                      |++++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+....                       
T Consensus       245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------  301 (550)
T 3rix_A          245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI-----------------------  301 (550)
T ss_dssp             SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG-----------------------
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc-----------------------
Confidence            9999988889999999999987 7999999999999999999999999988762100                       


Q ss_pred             HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCc-eecccCcchhcchhcccCCCCCCCCCc
Q 005406          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHV  465 (698)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~v  465 (698)
                                         .....+++|.+++||+++++++.+++.+.+++. +++.||+||+++.++.........+++
T Consensus       302 -------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v  362 (550)
T 3rix_A          302 -------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV  362 (550)
T ss_dssp             -------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred             -------------------cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence                               001115899999999999999999999988875 999999999998887777666778999


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCC
Q 005406          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (698)
Q Consensus       466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~  545 (698)
                      |+|+++++++|+|++++..++.++   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus       363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d  439 (550)
T 3rix_A          363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK  439 (550)
T ss_dssp             EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred             ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence            999999999999977777776665   89999999999999999999999999999999999999999999999999999


Q ss_pred             CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA  622 (698)
Q Consensus       546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (698)
                      |+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.++..                         .
T Consensus       440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-------------------------~  493 (550)
T 3rix_A          440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT-------------------------M  493 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC-------------------------C
Confidence            99997 899999999999999999999999998653   467889988876420                         1


Q ss_pred             HHHHHHHHHHhCCCCCcceee-EEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406          623 VLAEMNAVGKEGQLRGFEYAK-AVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN  680 (698)
Q Consensus       623 i~~~l~~~~~~~~L~~~~~p~-~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~  680 (698)
                      ..++|.++++ .+|+.|+.|. .|++++++|      +|++||++|++|++.+.+....
T Consensus       494 ~~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~  545 (550)
T 3rix_A          494 TEKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG  545 (550)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CHHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence            1345566664 6788886655 699999999      9999999999999998765544

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=7.3e-80  Score=684.04  Aligned_cols=492  Identities=25%  Similarity=0.351  Sum_probs=412.5

Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|++.++++|++.++...   +   ...+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---T---AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---E---TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---c---CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            5688999999999999764   1   112569999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      +++||+++.++.+++.+++++++++++|++.+....+.........  .++.++....             ..+.+....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~  142 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG  142 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence            9999999999999999999999999999998765544433332221  2333322110             122222222


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHh
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY  321 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~  321 (698)
                      . ..........++++++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.. .+.+++.
T Consensus       143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  221 (503)
T 4fuq_A          143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA  221 (503)
T ss_dssp             S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred             C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence            1 1122334567899999999999999999999999999999988888899999999999999999999765 6778999


Q ss_pred             CcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHH
Q 005406          322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (698)
Q Consensus       322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (698)
                      |+++++.+ +++..+++.++  ++|+++++|+++..+.+....                                     
T Consensus       222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-------------------------------------  262 (503)
T 4fuq_A          222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL-------------------------------------  262 (503)
T ss_dssp             TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC-------------------------------------
T ss_pred             CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc-------------------------------------
Confidence            99999887 79999999998  899999999999888752100                                     


Q ss_pred             HHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecC
Q 005406          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP  480 (698)
Q Consensus       401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~  480 (698)
                           .....+++|.+++||+++++++.+.|...+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus       263 -----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  337 (503)
T 4fuq_A          263 -----TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE  337 (503)
T ss_dssp             -----STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred             -----cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence                 001125899999999999999999999999999999999999988765444455667899999999999999977


Q ss_pred             CCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchH
Q 005406          481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK  560 (698)
Q Consensus       481 ~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~e  560 (698)
                      ++..++.++   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.|
T Consensus       338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e  413 (503)
T 4fuq_A          338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE  413 (503)
T ss_dssp             TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred             CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence            778777765   8999999999999999999999999988999999999999999999999999999997 899999999


Q ss_pred             HHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCC
Q 005406          561 IENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLR  637 (698)
Q Consensus       561 IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~  637 (698)
                      ||++|.+||+|.+|+|++.++   ++.++|+|+++++.        ..+                 .++++++++ .+|+
T Consensus       414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~~-----------------~~~l~~~l~-~~L~  467 (503)
T 4fuq_A          414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TID-----------------EAQVLHGLD-GQLA  467 (503)
T ss_dssp             HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HHHHHHHHB-TTBC
T ss_pred             HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CCC-----------------HHHHHHHHH-hhcc
Confidence            999999999999999998543   46789999987642        111                 345666664 7899


Q ss_pred             CcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          638 GFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       638 ~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .|++|+.|++++++|      +|++||++|++|++.|++
T Consensus       468 ~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          468 KFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             GGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred             cCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence            999999999999999      999999999999998864

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=8.1e-80  Score=686.03  Aligned_cols=498  Identities=20%  Similarity=0.250  Sum_probs=414.4

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .+...|+.++|+++++++||++|+++.   +    ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   84 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEP---S----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL   84 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEG---G----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeC---C----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence            456789999999999999999999764   2    235799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      +|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++.+.               ...
T Consensus        85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~  149 (517)
T 3r44_A           85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI---------------GAD  149 (517)
T ss_dssp             HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE---------------EHH
T ss_pred             HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc---------------Ccc
Confidence            99999999999999999999999999999999999999887776665544333221111110               001


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      .+.+....... ..+.....++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++..
T Consensus       150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  228 (517)
T 3r44_A          150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT  228 (517)
T ss_dssp             HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred             cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence            23444433222 22344567899999999999999999999999999999988888889999999999999999999988


Q ss_pred             HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+....                              
T Consensus       229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------  278 (517)
T 3r44_A          229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------  278 (517)
T ss_dssp             HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred             HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence            666666999999887 7999999999999999999999999988763110                              


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCCCCCccCCCCC
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPA  471 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~  471 (698)
                                  .....+++|.+++||+++++++.+.+... +++++++||+||+++.++.....  ....+++|+|.++
T Consensus       279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~  345 (517)
T 3r44_A          279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF  345 (517)
T ss_dssp             ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred             ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence                        11122589999999999999999999886 99999999999998876654433  3567899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecC
Q 005406          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (698)
Q Consensus       472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls  551 (698)
                      ++++|+| +++...+.+    .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+ 
T Consensus       346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  418 (517)
T 3r44_A          346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-  418 (517)
T ss_dssp             EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred             eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence            9999999 444433333    69999999999999999999999999 7899999999999999999999999999997 


Q ss_pred             CceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005406          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMN  628 (698)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  628 (698)
                      +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|+.....         .+                 .++|+
T Consensus       419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~l~  472 (517)
T 3r44_A          419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------VS-----------------EQQIV  472 (517)
T ss_dssp             TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------CC-----------------HHHHH
T ss_pred             CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------CC-----------------HHHHH
Confidence            899999999999999999999999998543   35677777443321         11                 34566


Q ss_pred             HHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHH
Q 005406          629 AVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAI  678 (698)
Q Consensus       629 ~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i  678 (698)
                      ++++ .+|+.|++|+.|++++++|      +|++||++|++|++.|.+++
T Consensus       473 ~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          473 EYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             HHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred             HHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence            6665 6799999999999999999      99999999999999987654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.4e-80  Score=690.25  Aligned_cols=500  Identities=17%  Similarity=0.201  Sum_probs=338.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++||++|+.+.         .+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus        28 ~~~tl~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l   98 (544)
T 3o83_A           28 IDQPLTRILTVGVQSHPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF   98 (544)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999753         2579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++....     ..........+....++..+....           
T Consensus        99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  167 (544)
T 3o83_A           99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT-----------  167 (544)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred             HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence            9999999999999999999999999999999999987653     223333344455566666544211           


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                       ...+.++.........+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  246 (544)
T 3o83_A          168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM  246 (544)
T ss_dssp             -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred             -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence             1345555544333223334567899999999999999999999999999999988888889999999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      +..  .+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+......                       
T Consensus       247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  303 (544)
T 3o83_A          247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-----------------------  303 (544)
T ss_dssp             HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred             cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence            875  678899999999987 799999999999999999999999998876422100                       


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-CCCCCccC
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS  467 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~  467 (698)
                              .           ..+++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus       304 --------~-----------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  364 (544)
T 3o83_A          304 --------D-----------QIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR  364 (544)
T ss_dssp             --------H-----------HHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred             --------c-----------cCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence                    0           005899999999999999999999989999999999999876544332221 23468999


Q ss_pred             CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      |+ ++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus       365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd  440 (544)
T 3o83_A          365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD  440 (544)
T ss_dssp             ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred             ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence            96 899999999 6677776665   899999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.+..                          ..
T Consensus       441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~--------------------------~~  493 (544)
T 3o83_A          441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE--------------------------LK  493 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC--------------------------CC
Confidence            9996 899999999999999999999999998543   46788999876532                          11


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                      .+++++++++.+|+.|++|+.|++++++|      +|++||++|++|++.|.+
T Consensus       494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          494 AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhh
Confidence            34455666534799999999999999999      999999999999998864

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.3e-78  Score=672.89  Aligned_cols=487  Identities=19%  Similarity=0.240  Sum_probs=401.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ++|+.++|+++++++||++|+.+.   +.    .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999753   21    26799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEe--cccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC--IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |+++|++++|+++.++.+++.+++++++++++|+  +......+..   ..+.++ ++                     .
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~---------------------~  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-II---------------------F  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EE---------------------E
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eE---------------------E
Confidence            9999999999999999999999999999999999  6654443311   112222 22                     2


Q ss_pred             HHHHHhcCC----CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccccc--CCCcEEEEcCChhhH
Q 005406          236 YLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHI  309 (698)
Q Consensus       236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~  309 (698)
                      ++++...+.    ....+.....++++++|+|||||||.||||++||+++.+.+......+++  .++|++++++|++|.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  208 (504)
T 1t5h_X          129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV  208 (504)
T ss_dssp             GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred             ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence            222222110    11111234578999999999999999999999999999988877767777  889999999999999


Q ss_pred             HHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406          310 YERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI  387 (698)
Q Consensus       310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~  387 (698)
                      +++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..|.+......                      
T Consensus       209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  266 (504)
T 1t5h_X          209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------  266 (504)
T ss_dssp             HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred             chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence            99854 788999999999987 799999999999999999999999998876321000                      


Q ss_pred             HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccC
Q 005406          388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS  467 (698)
Q Consensus       388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~  467 (698)
                          .              ....+++|.+++||+++++++.+.|++.+++.+++.||+||++.. ....  ....+++|.
T Consensus       267 ----~--------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~--~~~~~~~g~  325 (504)
T 1t5h_X          267 ----S--------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR--QPKTGTEMA  325 (504)
T ss_dssp             ----C--------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--SCSSSSEEB
T ss_pred             ----c--------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--CCCCCcccc
Confidence                0              001158999999999999999999999999999999999999432 2221  345688999


Q ss_pred             CCCCcEEEEEecCCC--CCCCCCCCCCccEEEEe-CCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC
Q 005406          468 PNPACEIKLVDVPEM--NYTSEDQPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK  544 (698)
Q Consensus       468 p~~~~~v~i~d~~~~--~~~~~~~~~~~GEl~v~-g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~  544 (698)
                      |.++++++|+|.++.  ..++.+   +.|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus       326 p~~~~~~~i~~~~~~~~~~~~~g---~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~  401 (504)
T 1t5h_X          326 PGFFSEVRIVRIGGGVDEIVANG---EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV  401 (504)
T ss_dssp             CCTTCCEEEECTTSCTTCBCCTT---CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred             CCCCCceeEEeccCCCCCcCCCC---CcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence            999999999994332  444444   48999999 9999999999999999999 7899999999999999999999999


Q ss_pred             CCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005406          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARA  621 (698)
Q Consensus       545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (698)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|+++++.        ..+               
T Consensus       402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~---------------  457 (504)
T 1t5h_X          402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS---------------  457 (504)
T ss_dssp             GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CCC---------------
T ss_pred             cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------CcC---------------
Confidence            999996 899999999999999999999999999654   46899999987632        111               


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          622 AVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       622 ~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                        .++|++++++.+|+.|++|+.|++++++|      +|++|||+|++|++.|+
T Consensus       458 --~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          458 --ADALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             --HHHHHHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred             --HHHHHHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence              35667777633899999999999999999      99999999999999874

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.5e-78  Score=693.08  Aligned_cols=523  Identities=17%  Similarity=0.226  Sum_probs=426.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...+++++|+++++++||++|+++.   +...++.+.+||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3467889999999999999999875   3223346789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch---------HHHHhhhhcCC--ceeEEEEeCCCCCCCCCC
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIP--SVHLIVVVGGKDEHLPSL  225 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~---------~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~  225 (698)
                      ||+++|++++|+++.++.+++.+++++++++++|++....         ..+.+.....+  .+..+++++....... .
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~  229 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-W  229 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-C
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-c
Confidence            9999999999999999999999999999999999986532         23333333332  4566676654321110 0


Q ss_pred             CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcC
Q 005406          226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYL  304 (698)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~  304 (698)
                      .  . .....|++++..... ..+.....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus       230 ~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~  305 (652)
T 1pg4_A          230 Q--E-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA  305 (652)
T ss_dssp             C--B-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             c--C-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence            0  0 123578887764322 1233345689999999999999999999999999887653 344457889999999999


Q ss_pred             ChhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005406          305 PLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA  378 (698)
Q Consensus       305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~  378 (698)
                      |++|++++.. ++.+++.|+++++++     .++..+++.|+++++|+++++|+++..|.+......             
T Consensus       306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------  372 (652)
T 1pg4_A          306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-------------  372 (652)
T ss_dssp             CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-------------
T ss_pred             CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc-------------
Confidence            9999999954 788999999999987     378999999999999999999999998875311000             


Q ss_pred             HHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhccc
Q 005406          379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAI  455 (698)
Q Consensus       379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~  455 (698)
                                                 +....++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++..
T Consensus       373 ---------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~  425 (652)
T 1pg4_A          373 ---------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP  425 (652)
T ss_dssp             ---------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC
T ss_pred             ---------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecC
Confidence                                       0011268999999999999999999998888   8999999999998766655


Q ss_pred             CCC--CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecCcE
Q 005406          456 DKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGDI  529 (698)
Q Consensus       456 ~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TGDl  529 (698)
                      .+.  ....+++|+|++|++++|+| +++..++.+.   .|||+|+|  |++++|||++|+.+.+.|.  .+|||+|||+
T Consensus       426 ~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl  501 (652)
T 1pg4_A          426 LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG  501 (652)
T ss_dssp             CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred             CCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence            432  35678999999999999999 5566665554   89999999  7999999999999988763  4899999999


Q ss_pred             EEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCC
Q 005406          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIK  606 (698)
Q Consensus       530 g~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~  606 (698)
                      |++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++|+|+++++.          .
T Consensus       502 g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----------~  570 (652)
T 1pg4_A          502 ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E  570 (652)
T ss_dssp             EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C
T ss_pred             EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC----------C
Confidence            999999999999999999998 899999999999999999999999998543   46899999988642          0


Q ss_pred             cccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          607 FEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                              .++    .+.++|+++++ .+|+.|++|+.|++++++|      +|++|||+|++|++.+..+++++
T Consensus       571 --------~~~----~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~  626 (652)
T 1pg4_A          571 --------PSP----ELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL  626 (652)
T ss_dssp             --------CCH----HHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred             --------CCH----HHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCCC
Confidence                    011    23456667775 6799999999999999999      99999999999999998766443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=8.8e-78  Score=676.47  Aligned_cols=507  Identities=19%  Similarity=0.243  Sum_probs=426.9

Q ss_pred             CCCCHHHHHHHHHHh-----CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHh
Q 005406           77 EIGTLHDNFIYAVEN-----YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE  150 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e  150 (698)
                      ...++.++|++++++     +||++|+.+.   ++. +..+++||+||.++++++|++|++. |+++||+|+|+++|+++
T Consensus        36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e  111 (570)
T 3c5e_A           36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE  111 (570)
T ss_dssp             BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred             cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence            345678999999999     9999999875   321 2347899999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCC
Q 005406          151 WLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG  230 (698)
Q Consensus       151 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  230 (698)
                      |++++|||+++|+++||+++.++.+++.+++++++++++|++.+....+......++.++.++.+++...        .+
T Consensus       112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  183 (570)
T 3c5e_A          112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------DG  183 (570)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------TT
T ss_pred             HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------cc
Confidence            9999999999999999999999999999999999999999998887777766666777777776654210        11


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHH-HHHhcccccccCCCcEEEEcCChhhH
Q 005406          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS-NVAGFSLMVQFYPSDIYMSYLPLAHI  309 (698)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (698)
                        ...+++++..... ..+.....++++++|+|||||||.||||++||+.+.. ..... ..+++.++|++++++|++|+
T Consensus       184 --~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~  259 (570)
T 3c5e_A          184 --WLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWI  259 (570)
T ss_dssp             --SEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSH
T ss_pred             --cccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHH
Confidence              2467777654332 1222346789999999999999999999999994432 44443 56788999999999999999


Q ss_pred             HHHHH-HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406          310 YERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (698)
Q Consensus       310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (698)
                      +++.. .+.+++.|+++++.+   +++..+++.|+++++|+++++|+++..+.+..   .                    
T Consensus       260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~--------------------  316 (570)
T 3c5e_A          260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L--------------------  316 (570)
T ss_dssp             HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T--------------------
T ss_pred             HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c--------------------
Confidence            99885 778899999999985   69999999999999999999999999886520   0                    


Q ss_pred             HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCc
Q 005406          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV  465 (698)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~v  465 (698)
                                          .....+++|.+++||+++++++.+.|.+.+|+++++.||+||++++++.........+++
T Consensus       317 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~v  376 (570)
T 3c5e_A          317 --------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYM  376 (570)
T ss_dssp             --------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCC
T ss_pred             --------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcc
Confidence                                000115899999999999999999999988999999999999987666554445667899


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEe-----CCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEE
Q 005406          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR-----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~-----g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i  540 (698)
                      |+|+++++++|+| ++++.++.++   .|||+|+     |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus       377 G~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~  451 (570)
T 3c5e_A          377 GTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQF  451 (570)
T ss_dssp             CEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEE
T ss_pred             cccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEE
Confidence            9999999999999 5667776665   8999999     9999999999999999999 589999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP  617 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (698)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.++...                 .. 
T Consensus       452 ~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----------------~~-  512 (570)
T 3c5e_A          452 MGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS-----------------HD-  512 (570)
T ss_dssp             EEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT-----------------SC-
T ss_pred             EecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC-----------------cc-
Confidence            9999999997 899999999999999999999999998643   4678999998764200                 01 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406          618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA  675 (698)
Q Consensus       618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~  675 (698)
                        .+.+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+.
T Consensus       513 --~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~  561 (570)
T 3c5e_A          513 --PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEW  561 (570)
T ss_dssp             --HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHT
T ss_pred             --hHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHH
Confidence              1234567777775 6899999999999999999      99999999999998764

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.4e-77  Score=685.31  Aligned_cols=532  Identities=16%  Similarity=0.207  Sum_probs=425.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...+++++|+++++++||++|+++.   +...+..+.+||+||+++++++|++|+ ++|+++||+|+|+++|++|+++++
T Consensus        80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~  156 (663)
T 1ry2_A           80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  156 (663)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence            4568899999999999999999875   322334678999999999999999999 999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch---------HHHHhhhhcCCceeEEEEeCCCCCCCCCCC
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPSVHLIVVVGGKDEHLPSLP  226 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~  226 (698)
                      |||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.+....++.++.+++++......... 
T Consensus       157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-  235 (663)
T 1ry2_A          157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-  235 (663)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-
Confidence            99999999999999999999999999999999999987542         23444555566777777776432100000 


Q ss_pred             CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCC
Q 005406          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLP  305 (698)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p  305 (698)
                        .......|.++...... ..+..+..++++++|+|||||||.||||+++|++++..+. .....+++.++|++++++|
T Consensus       236 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~  312 (663)
T 1ry2_A          236 --HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD  312 (663)
T ss_dssp             --CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred             --CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence              01123568887754322 2233456789999999999999999999999999876654 3344578899999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      ++|+++... ++.+++.|+++++++     .++..+++.|+++++|+++++|+++..|.+....                
T Consensus       313 ~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------  376 (663)
T 1ry2_A          313 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS----------------  376 (663)
T ss_dssp             TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------------
T ss_pred             cHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc----------------
Confidence            999999854 788999999999987     3788999999999999999999999887642100                


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccC
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAID  456 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~  456 (698)
                                   ..           +....++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++...
T Consensus       377 -------------~~-----------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~  432 (663)
T 1ry2_A          377 -------------YI-----------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL  432 (663)
T ss_dssp             -------------SS-----------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred             -------------cc-----------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccC
Confidence                         00           0001158999999999999999999999888   89999999999987666544


Q ss_pred             C---CCCCCCCccCCCCCcEEEEEecCCCCCCCC-CCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecCc
Q 005406          457 K---GDNLSGHVGSPNPACEIKLVDVPEMNYTSE-DQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGD  528 (698)
Q Consensus       457 ~---~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TGD  528 (698)
                      +   .....+++|+|++|++++|+|.+++..++. +   +.|||+|+|  |++++|||++|+.|.+.|.  .+|||+|||
T Consensus       433 ~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g---~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGD  509 (663)
T 1ry2_A          433 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH---AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD  509 (663)
T ss_dssp             TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS---CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEE
T ss_pred             CCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC---cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCC
Confidence            3   235678999999999999999546665554 4   389999999  5899999999999988873  389999999


Q ss_pred             EEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCC
Q 005406          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGI  605 (698)
Q Consensus       529 lg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~  605 (698)
                      +|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++   ++.++|+|+++++..  +..   .
T Consensus       510 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~--~~~---~  583 (663)
T 1ry2_A          510 GAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS--WST---A  583 (663)
T ss_dssp             EEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------------
T ss_pred             EEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc--ccc---c
Confidence            9999999999999999999997 799999999999999999999999999654   468999999887431  000   0


Q ss_pred             CcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          606 KFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                               .++ ..+.+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.|..+++++
T Consensus       584 ---------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~  642 (663)
T 1ry2_A          584 ---------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQL  642 (663)
T ss_dssp             --------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC------
T ss_pred             ---------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCCC
Confidence                     000 00023566677775 6799999999999999999      99999999999999998765444

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.5e-78  Score=673.67  Aligned_cols=491  Identities=20%  Similarity=0.273  Sum_probs=330.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|+++++++||++|+.+.         .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++||
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   75 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGA   75 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHCCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999763         25699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++.+++.+++++++++++|++.+....+......++.+..++.+++...              .+.
T Consensus        76 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  141 (509)
T 3ivr_A           76 VALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PFA  141 (509)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SCE
T ss_pred             HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Chh
Confidence            999999999999999999999999999999999999887776666667777777777654221              111


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV  317 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~  317 (698)
                      ++.........+.....++++++|+|||||||.||||++||+++.+.+.+....++++++|++++++|++|++++...+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  221 (509)
T 3ivr_A          142 PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT  221 (509)
T ss_dssp             EGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred             hHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence            22221112223344567899999999999999999999999999999988888899999999999999999999988776


Q ss_pred             HHHhCcE-EEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchh
Q 005406          318 SVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (698)
Q Consensus       318 ~l~~G~~-~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (698)
                      +++.|++ +++..+++..+++.++++++|+++++|+++..+++...     .                            
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~----------------------------  268 (509)
T 3ivr_A          222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----P----------------------------  268 (509)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----G----------------------------
T ss_pred             HHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----c----------------------------
Confidence            5555544 44445899999999999999999999999999876320     0                            


Q ss_pred             hHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEE
Q 005406          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK  475 (698)
Q Consensus       397 ~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~  475 (698)
                                 ...+++|.++.||++   ++.+.+...+ ++++++.||+||++++++.....+ ...++|+|+++++++
T Consensus       269 -----------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~  333 (509)
T 3ivr_A          269 -----------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVA  333 (509)
T ss_dssp             -----------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEEE
T ss_pred             -----------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEEE
Confidence                       001589999999987   7788888877 899999999999998776654332 335699999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC--CCeEecCCc
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK--KNIFKLAQG  553 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~--~d~ikls~G  553 (698)
                      |+| +++..++.++   .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+  ||+||+ +|
T Consensus       334 i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G  407 (509)
T 3ivr_A          334 VVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GG  407 (509)
T ss_dssp             EEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC-----------
T ss_pred             EEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-CC
Confidence            999 5567666665   89999999999999999999999999 5899999999999999999999999  999996 89


Q ss_pred             eeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406          554 EYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV  630 (698)
Q Consensus       554 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  630 (698)
                      ++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.++..                         ...++|+++
T Consensus       408 ~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~-------------------------~~~~~l~~~  462 (509)
T 3ivr_A          408 ENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES-------------------------IAADALAEF  462 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC-------------------------CCHHHHHHH
Confidence            9999999999999999999999998653   467889988876420                         113456666


Q ss_pred             HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      ++ .+|+.|++|+.|++++++|      +|++||++|++|++.+++.
T Consensus       463 l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          463 VA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             -----------------------------------------------
T ss_pred             HH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence            65 7899999999999999999      9999999999999998654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=7e-77  Score=662.08  Aligned_cols=487  Identities=17%  Similarity=0.189  Sum_probs=411.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      +|+.++|+++++++||++|+.+.         .+++||+||+++++++|++|++. |.++|++|+++++|+++|++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ---------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC---------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999653         25799999999999999999875 888999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++.+++.+++++++++++|++......      ..                     ........+.
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~  124 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE  124 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence            99999999999999999999999999999999996543110      00                     0112345667


Q ss_pred             HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH
Q 005406          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV  317 (698)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~  317 (698)
                      ++...............++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|++++...+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  204 (511)
T 3e7w_A          125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP  204 (511)
T ss_dssp             HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred             hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence            76654433323334467899999999999999999999999999999988888889999999999999999999988899


Q ss_pred             HHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          318 SVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      +++.|+++++.+    .++..+++.++++++|++.++|+++..+.....                               
T Consensus       205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------  253 (511)
T 3e7w_A          205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------------  253 (511)
T ss_dssp             HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred             HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence            999999999987    488999999999999999999999988764210                               


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-----CCCCCCccC
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGS  467 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~  467 (698)
                                 ......+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++.....     .....++|+
T Consensus       254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  322 (511)
T 3e7w_A          254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF  322 (511)
T ss_dssp             -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred             -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence                       0001125899999999999999999999988 89999999999998876654322     234567999


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc---CCCceecCcEEEEecCCcEEEEccC
Q 005406          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGRLKIIDRK  544 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~---~~gw~~TGDlg~~~~~G~l~i~GR~  544 (698)
                      |+++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|.   +++||+|||+|++ +||+|+|+||+
T Consensus       323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~  397 (511)
T 3e7w_A          323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL  397 (511)
T ss_dssp             ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred             eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence            99999999999 5567766665   899999999999999999999999982   2237999999999 59999999999


Q ss_pred             CCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005406          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARA  621 (698)
Q Consensus       545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (698)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .++.++|+|++++...         .         .   ..
T Consensus       398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~---------~---------~---~~  455 (511)
T 3e7w_A          398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF---------E---------K---EF  455 (511)
T ss_dssp             SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC---------S---------S---HH
T ss_pred             cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc---------c---------c---hh
Confidence            999998 89999999999999999999999999854   3468999999886420         0         0   11


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          622 AVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       622 ~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      .+.++|+++++ .+|+.|++|+.|++++++|      +|++|||+|++|++.+.+.
T Consensus       456 ~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          456 QLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             HHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence            23566777775 6899999999999999999      9999999999999998764

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.2e-77  Score=666.61  Aligned_cols=485  Identities=19%  Similarity=0.237  Sum_probs=405.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      +|+.++|+++++++||++|+.+.   +      +++||+||+++++++|++|.+.|+++|++|+|+++|+++|++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999764   2      46999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee---
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS---  235 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---  235 (698)
                      +++|+++||+++.++.+++.+++++++++++|++......      ..+                       .....   
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-----------------------~~~~~~~~  122 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-----------------------VRIVSEDN  122 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-----------------------SEEEETHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-----------------------cceechhh
Confidence            9999999999999999999999999999999987542110      000                       01111   


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          236 YLQLQSQG-CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       236 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      +.++.... ...+.+.....++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|++++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  202 (512)
T 3fce_A          123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD  202 (512)
T ss_dssp             HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH
T ss_pred             hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH
Confidence            22222111 11222334467899999999999999999999999999999988888889999999999999999999988


Q ss_pred             HHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      .+.+++.|+++++.+    .++..+++.++++++|++.++|+++..+......                           
T Consensus       203 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------  255 (512)
T 3fce_A          203 IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF---------------------------  255 (512)
T ss_dssp             HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------
T ss_pred             HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------
Confidence            899999999999987    4899999999999999999999999877542100                           


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGH  464 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~  464 (698)
                                     .....+++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++......     ....+
T Consensus       256 ---------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~  320 (512)
T 3fce_A          256 ---------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP  320 (512)
T ss_dssp             ---------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred             ---------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence                           001125899999999999999999999988 899999999999988766543322     35678


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEEE
Q 005406          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      +|+|.++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|   +++|||+|||+|++ +||+|+|+
T Consensus       321 ~G~~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~  395 (512)
T 3fce_A          321 VGYCKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN  395 (512)
T ss_dssp             CEEECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred             cccccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence            99999999999999 6667666665   89999999999999999999999988   56789999999999 79999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.+...                  .+  
T Consensus       396 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------------~~--  454 (512)
T 3fce_A          396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF------------------EK--  454 (512)
T ss_dssp             EEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC------------------SS--
T ss_pred             cccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc------------------cc--
Confidence            999999998 899999999999999999999999998543   467899999876320                  01  


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                       ...+.++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.|+++
T Consensus       455 -~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          455 -EFKLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             -HHHHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred             -hhhhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence             0123566777775 7899999999999999999      9999999999999998753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.7e-76  Score=662.18  Aligned_cols=499  Identities=21%  Similarity=0.298  Sum_probs=406.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..++.++|+++++ +||++|+.+.   +      +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   92 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG   92 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred             eeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            4568999999999 9999999653   1      4699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce-eEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      |+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..++.++....        .+.....+
T Consensus        93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  164 (529)
T 2v7b_A           93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPLF  164 (529)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCBH
T ss_pred             HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccch
Confidence            9999999999999999999999999999999999988776666554444444 44555443211        00011356


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHH-HHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (698)
                      +++...... ..+.....++++++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++.. 
T Consensus       165 ~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~  243 (529)
T 2v7b_A          165 EELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNG  243 (529)
T ss_dssp             HHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHH
T ss_pred             hhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHH
Confidence            776653321 12233467899999999999999999999999999 666666666678899999999999999999876 


Q ss_pred             HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+.+++.|+++++.+  +++..+++.++++++|+++++|+++..+.....                             .
T Consensus       244 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------~  294 (529)
T 2v7b_A          244 LTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----------------------------L  294 (529)
T ss_dssp             THHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------C
T ss_pred             HHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------c
Confidence            567899999999873  799999999999999999999999988764200                             0


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCc
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC  472 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~  472 (698)
                      . ...+            .++|.+++||+++++++.+++.+.+|++++++||+||++.+++.........+++|+|++++
T Consensus       295 ~-~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~  361 (529)
T 2v7b_A          295 P-ARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGY  361 (529)
T ss_dssp             C-CGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTC
T ss_pred             c-cccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCC
Confidence            0 0000            37999999999999999999999899999999999999766555555556678999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCC
Q 005406          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~  552 (698)
                      +++|+| ++++.++.++   .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+ +
T Consensus       362 ~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~  435 (529)
T 2v7b_A          362 EIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-S  435 (529)
T ss_dssp             EEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC---
T ss_pred             EEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-C
Confidence            999999 6667776665   89999999999999999999999999 5899999999999999999999999999997 8


Q ss_pred             ceeecchHHHHHHhcCcCceeEEEEEcC--CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV  630 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  630 (698)
                      |++|+|.|||++|.+||+|.+|+|++..  .++.++|+|++.++.          .        .++    ...++|+++
T Consensus       436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~--------~~~----~~~~~l~~~  493 (529)
T 2v7b_A          436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A--------PSE----ILAEELKAF  493 (529)
T ss_dssp             --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCH----HHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C--------cch----hHHHHHHHH
Confidence            9999999999999999999999999862  346789999987631          0        011    124567777


Q ss_pred             HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      ++ .+|+.|++|+.|++++++|      +|++||++|++|++
T Consensus       494 l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          494 VK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE  528 (529)
T ss_dssp             HH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred             HH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence            75 7899999999999999999      99999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.2e-76  Score=670.94  Aligned_cols=501  Identities=20%  Similarity=0.247  Sum_probs=421.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|++++|+++++  ||++|+.+.         .+.+||+||+++++++|++|++.|+++|++|+|+++|+++|++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            45789999999887  999999753         2569999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|+++||+++.++.+++.++++++++++++++....     ..+.......+.++.+...+....           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            9999999999999999999999999999999999987653     223333334555665655543211           


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (698)
                        ..+.+....... .....+..+++++||+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus       163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~  239 (617)
T 3rg2_A          163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA  239 (617)
T ss_dssp             --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred             --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence              234444433222 22334567899999999999999999999999999999988888889999999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      +..  .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......                      
T Consensus       240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------  297 (617)
T 3rg2_A          240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES----------------------  297 (617)
T ss_dssp             HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred             hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence            875  788999999999987 7899999999999999999999999988764321100                      


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-CCCCCccC
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS  467 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~  467 (698)
                          .              ...+++|.+++||+++++++.++|...+|++++|.||+||++..++...... ....++|.
T Consensus       298 ----~--------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  359 (617)
T 3rg2_A          298 ----R--------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY  359 (617)
T ss_dssp             ----T--------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred             ----c--------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence                0              0015899999999999999999999989999999999999986554332211 22357899


Q ss_pred             CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (698)
Q Consensus       468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d  546 (698)
                      |+ ++++++|+| ++++.++.|.   .|||||+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||+||
T Consensus       360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd  435 (617)
T 3rg2_A          360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD  435 (617)
T ss_dssp             ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred             cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence            97 788999999 6677777665   899999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV  623 (698)
Q Consensus       547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (698)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|++++.+..          +                 
T Consensus       436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~----------~-----------------  487 (617)
T 3rg2_A          436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL----------R-----------------  487 (617)
T ss_dssp             EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC----------C-----------------
T ss_pred             EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC----------C-----------------
Confidence            9997 899999999999999999999999998542   46789999887521          1                 


Q ss_pred             HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406          624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN  680 (698)
Q Consensus       624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~  680 (698)
                      ..++++++++..||.|++|+.|++++++|      +|++||++|++|++.+.+....
T Consensus       488 ~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          488 AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence            34566666544799999999999999999      9999999999999998776543

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=8.6e-78  Score=677.83  Aligned_cols=478  Identities=18%  Similarity=0.213  Sum_probs=319.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      +...+++++|+++++++||++|+.+.         .+.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            45679999999999999999999753         256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|+++||+++.++.+++.+++++++++++|++.....       .++....++..+...                
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~----------------  199 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEAA----------------  199 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeecccc----------------
Confidence            999999999999999999999999999999999999875432       222222222211100                


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (698)
                            .............++++++|+|||||||.||||++||+++.+.+.. ...++++++|++++++|++|..+....
T Consensus       200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~  272 (570)
T 4gr5_A          200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL  272 (570)
T ss_dssp             ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred             ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence                  0001112223467899999999999999999999999999877655 445678899999999999998888788


Q ss_pred             HHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      +.+++.|+++++.+   .++..+++.|+++++|++.++|+++..|.+.....                            
T Consensus       273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------------  324 (570)
T 4gr5_A          273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA----------------------------  324 (570)
T ss_dssp             HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG----------------------------
T ss_pred             HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh----------------------------
Confidence            88999999999986   58999999999999999999999999887631100                            


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC----CCCCCCccC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS  467 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~  467 (698)
                                       .+++|.+++||++++++..+.+.+.+ +++++++||+||++++++.....    .....++|+
T Consensus       325 -----------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~  387 (570)
T 4gr5_A          325 -----------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV  387 (570)
T ss_dssp             -----------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred             -----------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence                             15899999999999999998888776 89999999999998776644321    234567999


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC--------CCceecCcEEEEecCCcEE
Q 005406          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--------DGWLHTGDIGLWLPGGRLK  539 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~--------~gw~~TGDlg~~~~~G~l~  539 (698)
                      |+++++++|+| +++..++.++   .|||+|+|++++.|||++|+.|+++|..        +|||+|||+|++|+||+|+
T Consensus       388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~  463 (570)
T 4gr5_A          388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE  463 (570)
T ss_dssp             ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred             eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence            99999999999 5667666665   8999999999999999999999999854        3799999999999999999


Q ss_pred             EEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCC
Q 005406          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND  616 (698)
Q Consensus       540 i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (698)
                      |+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.+...                    
T Consensus       464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--------------------  522 (570)
T 4gr5_A          464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA--------------------  522 (570)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--------------------
Confidence            99999999997 899999999999999999999999998653   467899998765320                    


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          617 PRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       617 ~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                          ....++|+++++ .+|+.|++|+.|++++++|      +|++|||+|++|++.
T Consensus       523 ----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          523 ----PPDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS  568 (570)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ----CcCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence                012456667775 7899999999999999999      999999999999864

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=4e-77  Score=670.10  Aligned_cols=476  Identities=19%  Similarity=0.265  Sum_probs=397.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      +...|+.++|+++++++||++|+.+.         .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  106 (563)
T 1amu_A           36 PRDKTIHQLFEEQVSKRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI  106 (563)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHCCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34578999999999999999999653         256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|+++||+++.++.+++.+++++++++++|++.+....+...    .....+..++....               
T Consensus       107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------  167 (563)
T 1amu_A          107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI---------------  167 (563)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT---------------
T ss_pred             HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchhh---------------
Confidence            99999999999999999999999999999999999998765443221    11112332221100               


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (698)
                           ... .......+..++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++...
T Consensus       168 -----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~  241 (563)
T 1amu_A          168 -----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM  241 (563)
T ss_dssp             -----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred             -----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence                 000 00111234568999999999999999999999999999988877777889999999999999999999888


Q ss_pred             HHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005406          316 IVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (698)
Q Consensus       316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (698)
                      +.+++.|+++++.+    .++..+++.++++++|++.++|+++..+...                               
T Consensus       242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------------  290 (563)
T 1amu_A          242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------------  290 (563)
T ss_dssp             HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred             HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence            89999999999987    5889999999999999999999998665320                               


Q ss_pred             CCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC---CCCCCccCC
Q 005406          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGSP  468 (698)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p  468 (698)
                                       ...++|.+++||+++++++.+.|..  .++++++||+||++++++......   ...+++|+|
T Consensus       291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p  351 (563)
T 1amu_A          291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP  351 (563)
T ss_dssp             -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred             -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence                             0158999999999999999998876  478999999999987766543322   345789999


Q ss_pred             CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc------CCCceecCcEEEEecCCcEEEEc
Q 005406          469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~l~i~G  542 (698)
                      +++++++|+| +++..++.++   .|||+|+|+++++|||++|+.|+++|.      ++|||+|||+|++|+||+|+|+|
T Consensus       352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G  427 (563)
T 1amu_A          352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG  427 (563)
T ss_dssp             CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred             eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence            9999999999 5666666665   899999999999999999999999984      34699999999999999999999


Q ss_pred             cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA  619 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (698)
                      |+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++...          .+             
T Consensus       428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----------~~-------------  483 (563)
T 1amu_A          428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----------IP-------------  483 (563)
T ss_dssp             EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----------CC-------------
T ss_pred             cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC----------CC-------------
Confidence            99999997 899999999999999999999999998653   4678999997642          11             


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                          .++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.+
T Consensus       484 ----~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          484 ----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             ----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred             ----HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence                345666665 6799999999999999999      9999999999998754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.7e-77  Score=716.42  Aligned_cols=519  Identities=24%  Similarity=0.332  Sum_probs=344.6

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .|...|++++|.++++++||++|+++.   +.    .+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus        57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~  129 (979)
T 3tsy_A           57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS  129 (979)
T ss_dssp             CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence            345689999999999999999999763   21    25799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      +|||+++|+++||++|.++.+++.+++++++++++|++......+....... .. .++.+++.....      ......
T Consensus       130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~  201 (979)
T 3tsy_A          130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESVP------IPEGCL  201 (979)
T ss_dssp             HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTSC------CCTTEE
T ss_pred             HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCccccc------CCcccc
Confidence            9999999999999999999999999999999999999987765555443322 22 244444321100      011235


Q ss_pred             eHHHHHhcCCC--CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----ccccCCCcEEEEcCChhh
Q 005406          235 SYLQLQSQGCS--SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAH  308 (698)
Q Consensus       235 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h  308 (698)
                      .+.++......  ...+.....++++++|+|||||||.||||+++|+++++.+.....    .+.+.++|++++++|++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  281 (979)
T 3tsy_A          202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH  281 (979)
T ss_dssp             EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred             cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence            56655443221  112334567899999999999999999999999999988765443    356789999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406          309 IYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (698)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (698)
                      .+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+.....                      
T Consensus       282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  339 (979)
T 3tsy_A          282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----------------------  339 (979)
T ss_dssp             HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------
T ss_pred             HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------
Confidence            999976 677899999999987 79999999999999999999999998887631100                      


Q ss_pred             HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccC-----CCCC
Q 005406          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDN  460 (698)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----~~~~  460 (698)
                                          ....+++|.+++||+++++++.+++.+.+ ++++++.||+||++++++...     +...
T Consensus       340 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  399 (979)
T 3tsy_A          340 --------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV  399 (979)
T ss_dssp             --------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred             --------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence                                00115899999999999999999999988 899999999999987655431     2234


Q ss_pred             CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEE
Q 005406          461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i  540 (698)
                      ..+++|+|+++++++|+|++++..++.++   .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||.|+|
T Consensus       400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~  476 (979)
T 3tsy_A          400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI  476 (979)
T ss_dssp             CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence            67899999999999999977777777765   899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP  617 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (698)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+++|++.++   ++.++|+|++.++.                      
T Consensus       477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~----------------------  533 (979)
T 3tsy_A          477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS----------------------  533 (979)
T ss_dssp             EEESCC--------------------------------------------------------------------------
T ss_pred             ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC----------------------
Confidence            9999999997 899999999999999999999999998543   46789999876632                      


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhccc
Q 005406          618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA  686 (698)
Q Consensus       618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~~  686 (698)
                         ....++|+++++ .+|+.|++|+.|++++++|      +|++||++|++|++.|.+.+...|...+
T Consensus       534 ---~~~~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~~~e  592 (979)
T 3tsy_A          534 ---ELSEDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMASVE  592 (979)
T ss_dssp             -----------------------------------------------------------------CCHH
T ss_pred             ---CCCHHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCcccccc
Confidence               011345666665 7899999999999999999      9999999999999999999988887644

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=9.8e-77  Score=672.49  Aligned_cols=475  Identities=19%  Similarity=0.163  Sum_probs=387.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|++++|+++++++||++|+.+.         .+.+||+||+++++++|++|++.|+++|++|+|+++|+++|++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4679999999999999999999763         2569999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|+++||++|.++.+++.++++++++++++++......       ......                      ..+
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~----------------------~~~  146 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPC----------------------VPV  146 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCE----------------------EEG
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCce----------------------eee
Confidence            999999999999999999999999999999999976543211       000110                      011


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (698)
                      ....  ............+++++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|++++...+
T Consensus       147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~  223 (620)
T 4dg8_A          147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW  223 (620)
T ss_dssp             GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred             ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence            1000  001111223356899999999999999999999999999887765 4567889999999999999999999999


Q ss_pred             HHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          317 VSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       317 ~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+++.|+++++.+   .++..+.+.|+++++|++.++|+++..+.+...                               
T Consensus       224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------------  272 (620)
T 4dg8_A          224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------------  272 (620)
T ss_dssp             HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------------
T ss_pred             HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------------
Confidence            9999999999865   689999999999999999999999998865200                               


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC----CCCCCccCC
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD----NLSGHVGSP  468 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p  468 (698)
                                    ...+++|.+++||++++++..+.+...+ +++++|.||+||++++++......    ....++|+|
T Consensus       273 --------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p  338 (620)
T 4dg8_A          273 --------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA  338 (620)
T ss_dssp             --------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEE
T ss_pred             --------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceec
Confidence                          0015899999999999998888776655 899999999999998766543222    445789999


Q ss_pred             CCCcEEEEEecCCCCC-CCCCCCCCccEEEEeCCCccccccCChhhhcccccCC-------CceecCcEEEEecCCcEEE
Q 005406          469 NPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-------GWLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       469 ~~~~~v~i~d~~~~~~-~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~-------gw~~TGDlg~~~~~G~l~i  540 (698)
                      +++++++|+|. ++.. ++.+.   .|||||+|+++++|||++|+.|+++|..+       +||+|||+|++++||+|+|
T Consensus       339 ~~~~~~~i~d~-~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~  414 (620)
T 4dg8_A          339 IAGTAVLLLDE-HGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF  414 (620)
T ss_dssp             CTTEEEEEECT-TSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred             ccCcEEEEECc-cCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence            99999999994 4443 44444   89999999999999999999999999543       7999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCC--CeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.  ..++++++...+.                       
T Consensus       415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-----------------------  470 (620)
T 4dg8_A          415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-----------------------  470 (620)
T ss_dssp             EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------------
T ss_pred             EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------------
Confidence            9999999998 8999999999999999999999999985432  4556665544321                       


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN  680 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~  680 (698)
                          +.+.+.     .+||.|++|+.|++++++|      +|++||++|++|++.|.+.++.
T Consensus       471 ----~~~~l~-----~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~  517 (620)
T 4dg8_A          471 ----SPQALL-----RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEEPLER  517 (620)
T ss_dssp             ----CCHHHH-----HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCSCC--
T ss_pred             ----HHHHHH-----HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccccccc
Confidence                012221     4689999999999999999      9999999999999887654433

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.5e-76  Score=661.64  Aligned_cols=490  Identities=19%  Similarity=0.197  Sum_probs=401.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ..|+.++|++.++++||++|+.+.         .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            568999999999999999999653         25699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|+++||+++.++.+++.+++++++++++|++.+....+                             .+.....+.
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~  124 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS  124 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence            999999999999999999999999999999999986532110                             112234444


Q ss_pred             HHHhcC--CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc--cccCCCcEEEEcCChhhHHHHH
Q 005406          238 QLQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERA  313 (698)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~  313 (698)
                      ++....  ...........++++++|+|||||||.||||++||+++++.+.+....  +++.+++++++.+|++|.+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  204 (521)
T 3l8c_A          125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM  204 (521)
T ss_dssp             HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred             hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence            443211  111122345678999999999999999999999999999887766554  6778999999999999999988


Q ss_pred             HHHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          314 NQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      ..+.+++.|+++++.+    .++..+++.+.++++|++.++|+++..+......                          
T Consensus       205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  258 (521)
T 3l8c_A          205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF--------------------------  258 (521)
T ss_dssp             HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC--------------------------
T ss_pred             HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc--------------------------
Confidence            8889999999999887    3899999999999999999999999877541000                          


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSG  463 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~  463 (698)
                                      .....+++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++......     ...+
T Consensus       259 ----------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  322 (521)
T 3l8c_A          259 ----------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL  322 (521)
T ss_dssp             ----------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred             ----------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence                            000115899999999999999999998887 899999999999988766543221     3457


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEE
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKI  540 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i  540 (698)
                      ++|+|+++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|   +++|||+|||+|++|+||+|+|
T Consensus       323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~  398 (521)
T 3l8c_A          323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY  398 (521)
T ss_dssp             EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred             ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence            899999999999999 5666666665   89999999999999999999999988   6788999999999999999999


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC----CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCC
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF----NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND  616 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (698)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+    ++.++|+|++.++...              . ...
T Consensus       399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~--------------~-~~~  462 (521)
T 3l8c_A          399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE--------------R-FDR  462 (521)
T ss_dssp             EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG--------------G-CSS
T ss_pred             eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc--------------c-ccc
Confidence            9999999997 899999999999999999999999998532    3678999998874210              0 000


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          617 PRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       617 ~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                         ...+.++|+++++ .+|+.|++|+.|++++++|      +|++|||+|++|++.|+++
T Consensus       463 ---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          463 ---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             ---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred             ---chhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence               0134677888886 7899999999999999999      9999999999999998654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4.7e-76  Score=653.41  Aligned_cols=478  Identities=22%  Similarity=0.277  Sum_probs=379.5

Q ss_pred             CCCCHHHHHHHHHHhCCC-CCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ++.|+.++|.++++++|+ ++|+.+.         .+.+||+||.++++++|++|.     .|++|+|+++|+++|++++
T Consensus        20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~   85 (505)
T 3nyq_A           20 HMSSLFPALSPAPTGAPADRPALRFG---------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV   85 (505)
T ss_dssp             ----CCTTTSSCCCSGGGGSEEEEET---------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred             ccchhHHHHHHHHHhCCCCCeEEEEC---------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence            467888889999999887 9999753         257999999999999999875     3789999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|+++|||++.++.+++.+++++++++++|++.+...     ......+..+. ++...                
T Consensus        86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~~----------------  143 (505)
T 3nyq_A           86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVRA----------------  143 (505)
T ss_dssp             HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTTC----------------
T ss_pred             HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-ccccc----------------
Confidence            999999999999999999999999999999999999865210     00111222211 11100                


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (698)
                               ....+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. 
T Consensus       144 ---------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~  214 (505)
T 3nyq_A          144 ---------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG  214 (505)
T ss_dssp             ---------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred             ---------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence                     0112223457899999999999999999999999999999988888889999999999999999999876 


Q ss_pred             HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (698)
                      .+.+++.|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+....    ...                     
T Consensus       215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~----~~~---------------------  268 (505)
T 3nyq_A          215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP----ELA---------------------  268 (505)
T ss_dssp             THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----HHH---------------------
T ss_pred             HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----hhh---------------------
Confidence            788999999999887 7899999999 8899999999999998876422110    000                     


Q ss_pred             chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcE
Q 005406          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACE  473 (698)
Q Consensus       394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  473 (698)
                                    ...+++|.+++||+++++++.+++...+|++++|.||+||+++.++.........+++|+|+++++
T Consensus       269 --------------~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  334 (505)
T 3nyq_A          269 --------------KALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE  334 (505)
T ss_dssp             --------------HHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred             --------------cccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence                          000378999999999999999999998999999999999999877766655667789999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC-CCeEecCC
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLAQ  552 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~-~d~ikls~  552 (698)
                      ++|+| +++..++...+++.|||+|+|++++.|||++|+.|+++|..+|||+|||+|++|+||.|+|+||+ ||+||+ +
T Consensus       335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~  412 (505)
T 3nyq_A          335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G  412 (505)
T ss_dssp             EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred             EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence            99999 45555554333458999999999999999999999999999999999999999999999999998 599997 8


Q ss_pred             ceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA  629 (698)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  629 (698)
                      |++|+|.|||++|.+||+|.+|+|++.++   ++.++|+|++.+...       ..                 ..++|++
T Consensus       413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~-----------------~~~~l~~  468 (505)
T 3nyq_A          413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP-----------------ALGTLAD  468 (505)
T ss_dssp             TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC-----------------CHHHHHH
T ss_pred             CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC-----------------CHHHHHH
Confidence            99999999999999999999999998543   468999999875210       00                 1345666


Q ss_pred             HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      +++ .+|+.|++|+.|++++++|      +|++||++|++|++
T Consensus       469 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          469 HVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR  504 (505)
T ss_dssp             HHH-HHTCGGGSCSEEEECSCCC------C-------------
T ss_pred             HHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence            665 6799999999999999999      99999999999986

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7.5e-76  Score=652.65  Aligned_cols=490  Identities=20%  Similarity=0.225  Sum_probs=376.2

Q ss_pred             CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (698)
Q Consensus        80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~  159 (698)
                      |+.++|+++++++||++|+.+.   +      +++||+||+++++++|++|++.   +||+|+|+++|+++|++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678899999999999999653   2      4699999999999999999986   89999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe-eHHH
Q 005406          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQ  238 (698)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (698)
                      ++|++++|+++.++.+++.+++++++++++|++........... ....+..+..........   ......... ..+.
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  145 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLL---DNTMGIQYDTSNET  145 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeeccccccc---ccccccccccchhh
Confidence            99999999999999999999999999999999876543321111 011111111100000000   000000000 0011


Q ss_pred             HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (698)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (698)
                      +...............++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  225 (501)
T 3ipl_A          146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA  225 (501)
T ss_dssp             ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred             ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence            11101000112234578999999999999999999999999999999888888899999999999999999999988899


Q ss_pred             HHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (698)
Q Consensus       319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (698)
                      ++.|+++++.+ +++..+++.++++++|+++++|+++..|.+....                                  
T Consensus       226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------  271 (501)
T 3ipl_A          226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------------  271 (501)
T ss_dssp             HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred             HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence            99999999987 7999999999999999999999999988763100                                  


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCCCCCccCCCCCcEEE
Q 005406          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEIK  475 (698)
Q Consensus       398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~  475 (698)
                                 ...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++.....  ....+++|+|+++++++
T Consensus       272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  339 (501)
T 3ipl_A          272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK  339 (501)
T ss_dssp             -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred             -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence                       0027999999999999999999887 599999999999998755544332  24567899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCcee
Q 005406          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (698)
Q Consensus       476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~  555 (698)
                      |+|.+         ++..|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+++|+||+||+||+ +|++
T Consensus       340 i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~  407 (501)
T 3ipl_A          340 IKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN  407 (501)
T ss_dssp             EESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred             EecCC---------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence            99943         223799999999999999999999988 6 7899999999999999999999999999996 8999


Q ss_pred             ecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005406          556 VAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGK  632 (698)
Q Consensus       556 v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  632 (698)
                      |+|.|||++|.+||+|.+|+|++.++   ++.++|+|++..+          .+                 .++|+++++
T Consensus       408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~----------~~-----------------~~~l~~~l~  460 (501)
T 3ipl_A          408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD----------IS-----------------KAQLIAYLS  460 (501)
T ss_dssp             ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------HHHHHHHHH
T ss_pred             ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC----------CC-----------------HHHHHHHHH
Confidence            99999999999999999999998543   4578888887542          11                 345666665


Q ss_pred             hCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          633 EGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       633 ~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                       .+|+.|++|+.|++++++|      +|++||++|++|++.++++
T Consensus       461 -~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          461 -KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             -HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred             -hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence             6799999999999999999      9999999999999988764

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=6.1e-75  Score=711.17  Aligned_cols=526  Identities=20%  Similarity=0.250  Sum_probs=432.5

Q ss_pred             chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406            3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH   82 (698)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~   82 (698)
                      +..|+++|.++|++++++|+.+++++++..+.....                   +.......      ..+. ...+++
T Consensus       414 i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~-------------------~~~~~~~~------~~~~-~~~~l~  467 (1304)
T 2vsq_A          414 ILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREF-------------------LLTGLNPP------AQAH-ETKPLT  467 (1304)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHH-------------------HHTTTSCC------CCCC-CCCCHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccccCCCCHHHHHH-------------------HHHhcCCC------CCCC-CCCCHH
Confidence            457899999999999999999999999876542100                   00000000      0011 237899


Q ss_pred             HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (698)
Q Consensus        83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G  162 (698)
                      ++|++.++++||++|+.+.   +      +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus       468 ~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG  538 (1304)
T 2vsq_A          468 YWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG  538 (1304)
T ss_dssp             HHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence            9999999999999999653   2      469999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (698)
Q Consensus       163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (698)
                      +++|||+|.++.+++.++++++++++++++......+    ..++.....+.+++..                  .. ..
T Consensus       539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~-~~  595 (1304)
T 2vsq_A          539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA----AELPYTGTTLFIDDQT------------------RF-EE  595 (1304)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTS----TTCCCCSEEEESSCGG------------------GG-GS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhh----hccCCCCcEEEecccc------------------cc-cc
Confidence            9999999999999999999999999999987643321    1122222333332210                  00 00


Q ss_pred             CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG  322 (698)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G  322 (698)
                        ....+.....++++|||+|||||||.||||+++|+++.+. .+....++++++|+++++.|++|+.+...++.+++.|
T Consensus       596 --~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G  672 (1304)
T 2vsq_A          596 --QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNA  672 (1304)
T ss_dssp             --CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred             --ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcC
Confidence              1112233467899999999999999999999999999976 4455668889999999999999999998899999999


Q ss_pred             cEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406          323 VAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (698)
Q Consensus       323 ~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (698)
                      +++++.+    .++..+.+.|+++++|+++++|+++..+.+.....                                  
T Consensus       673 ~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------------------------------  718 (1304)
T 2vsq_A          673 ARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----------------------------------  718 (1304)
T ss_dssp             CEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH----------------------------------
T ss_pred             CEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc----------------------------------
Confidence            9999987    58899999999999999999999999886521000                                  


Q ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC----CCCCCCccCCCCCcE
Q 005406          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGSPNPACE  473 (698)
Q Consensus       399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~  473 (698)
                         +        +++|.+++||+++++++.+.|.+.+ +++++|+||+||++++++.....    .....++|+|++|++
T Consensus       719 ---~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~  787 (1304)
T 2vsq_A          719 ---M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNAS  787 (1304)
T ss_dssp             ---H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEE
T ss_pred             ---C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCE
Confidence               0        3799999999999999999888777 47899999999999877654332    234568999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc------CCCceecCcEEEEecCCcEEEEccCCCe
Q 005406          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (698)
Q Consensus       474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~l~i~GR~~d~  547 (698)
                      ++|+| ++++.++.|.   .|||||+|+++++||||+|+.|+++|.      +++||+|||+|++++||.|+|+||+||+
T Consensus       788 ~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~q  863 (1304)
T 2vsq_A          788 VYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQ  863 (1304)
T ss_dssp             EEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred             EEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCE
Confidence            99999 5667666665   899999999999999999999999993      3569999999999999999999999999


Q ss_pred             EecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL  624 (698)
Q Consensus       548 ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  624 (698)
                      ||+ +|++|+|.|||++|.+||+|.+|+|++.++   +..++|+|++...          .+                 .
T Consensus       864 vki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----------~~-----------------~  915 (1304)
T 2vsq_A          864 VKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----------LS-----------------A  915 (1304)
T ss_dssp             EEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS----------SC-----------------H
T ss_pred             EEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC----------CC-----------------H
Confidence            998 899999999999999999999999998543   4689999998652          11                 3


Q ss_pred             HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406          625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER  673 (698)
Q Consensus       625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~  673 (698)
                      ++|+++++ .+||.|++|..|++++++|      +|++|||+|++|.+.
T Consensus       916 ~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          916 EDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             HHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred             HHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence            45666664 6799999999999999999      999999999988654

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=3.9e-74  Score=647.85  Aligned_cols=515  Identities=15%  Similarity=0.153  Sum_probs=315.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEee-cCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVR-VDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~  155 (698)
                      ...|+.++|+++++++||++|+.+... .+......+.+||+||+++++++|++|.+.|+ +||+|+|+++|+++|++++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~   96 (562)
T 3ite_A           18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII   96 (562)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence            457899999999999999999987510 01111234789999999999999999999999 7999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (698)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (698)
                      |||+++|+++||+++.++.+++.+++++++++++|++......+     ..+....++....                ..
T Consensus        97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~~  155 (562)
T 3ite_A           97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------QS  155 (562)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------HH
T ss_pred             HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------hh
Confidence            99999999999999999999999999999999999986543221     1111111111100                12


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc--------cccCCCcEEEEcCChh
Q 005406          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--------VQFYPSDIYMSYLPLA  307 (698)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~  307 (698)
                      +.+....... ........++++++|+|||||||.||||++||+++.+.+..+...        +.+...+++++..|++
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (562)
T 3ite_A          156 FIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA  234 (562)
T ss_dssp             HHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTT
T ss_pred             hhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCch
Confidence            2333222211 122234567899999999999999999999999998877654332        4577889999999999


Q ss_pred             hHHHHHHHHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406          308 HIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (698)
Q Consensus       308 h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (698)
                      |.+++...+.++..|+++++.+  ..+..+.+.++++++|++.++|+++..+...                         
T Consensus       235 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------------  289 (562)
T 3ite_A          235 FDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------------  289 (562)
T ss_dssp             STHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-------------------------
T ss_pred             hhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-------------------------
Confidence            9999888889999999999876  2457788999999999999999987654220                         


Q ss_pred             HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC-CCCCCCC
Q 005406          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGH  464 (698)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~  464 (698)
                                           ....+++|.+++||+++++++.++|.+.+++++++.||+||+++.++.... .....++
T Consensus       290 ---------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  348 (562)
T 3ite_A          290 ---------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRC  348 (562)
T ss_dssp             ---------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTE
T ss_pred             ---------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcc
Confidence                                 001158999999999999999999998889999999999999877665443 2355678


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCC--ceecCcEEEEecCCcEEEEc
Q 005406          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG--WLHTGDIGLWLPGGRLKIID  542 (698)
Q Consensus       465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~g--w~~TGDlg~~~~~G~l~i~G  542 (698)
                      +|+|+++++++|+|++++..++.++   .|||+|+|+++++|||++|+.|+..+ .+|  ||+|||+|++|+||+|+|+|
T Consensus       349 ~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~G  424 (562)
T 3ite_A          349 IGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLG  424 (562)
T ss_dssp             EEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred             ccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEc
Confidence            9999999999999976666666665   89999999999999999999998776 344  99999999999999999999


Q ss_pred             cCCCeEecCCceeecchHHHHHHhcC-cCceeEEEEEcCC---CC-eEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406          543 RKKNIFKLAQGEYVAPEKIENVYAKC-KFVLQCFIYGDSF---NS-CLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP  617 (698)
Q Consensus       543 R~~d~ikls~G~~v~p~eIE~~l~~~-p~V~~~~V~g~~~---~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (698)
                      |+||+||+ +|++|+|.|||++|.++ |.+.+++|++.++   ++ .+++++.........          ....   -.
T Consensus       425 R~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~---~~  490 (562)
T 3ite_A          425 RKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG----------ELRW---IN  490 (562)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             cccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc----------cccc---cc
Confidence            99999997 89999999999999998 7888888887543   23 344454443322110          0000   00


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccC-cccCCChHHHHHHHHHHH-HHHHhcc
Q 005406          618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT-PTFKIKRPQAKERFAKAI-SNMYAEL  685 (698)
Q Consensus       618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T-~~GKi~R~~l~~~~~~~i-~~ly~~~  685 (698)
                      +-.+.+.++|+++++ .+|+.|++|+.|++++++|      +| ++||++|++|++.|++.- .+++...
T Consensus       491 ~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~~~~~~~~~~  553 (562)
T 3ite_A          491 ENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTLSLGELFGES  553 (562)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhccCHHHHhccC
Confidence            111234567888886 7899999999999999999      88 999999999999997543 3444443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=4.3e-73  Score=643.83  Aligned_cols=500  Identities=21%  Similarity=0.265  Sum_probs=395.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++||++|+.+.   ++  ++.+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   83 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL   83 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence            4679999999999999999999875   31  235789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCC---CHHHHHHHHhhccceEEEecccchHHHHhhh-hcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406          157 ACSAYSYISVPLYDTL---GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~---~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  232 (698)
                      ||+++|+++||+++.+   +.+++.++++++++++++++.+....+.... ...+....+.                   
T Consensus        84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-------------------  144 (590)
T 3kxw_A           84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP-------------------  144 (590)
T ss_dssp             HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE-------------------
T ss_pred             HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc-------------------
Confidence            9999999999999998   4578999999999999999987655543322 1222211111                   


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (698)
                      ....+++.... ..........++++++|+|||||||.||||++||+++++.+......++++++|++++++|++|++++
T Consensus       145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~  223 (590)
T 3kxw_A          145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL  223 (590)
T ss_dssp             EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred             eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence            11122111111 11122345678999999999999999999999999999999988888999999999999999999999


Q ss_pred             HH-HHHHHHhCcEEEEeC-C----ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406          313 AN-QIVSVYYGVAVGFYQ-G----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (698)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (698)
                      .. .+.+++.|+++++.+ +    ++..+++.|+++++|++.++|.++..+.+.+.....                    
T Consensus       224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--------------------  283 (590)
T 3kxw_A          224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK--------------------  283 (590)
T ss_dssp             HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG--------------------
T ss_pred             HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc--------------------
Confidence            87 788999999999987 2    899999999999999999999999888763211100                    


Q ss_pred             HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhcccCCC--
Q 005406          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAIDKG--  458 (698)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~~~~~~--  458 (698)
                                         .....+++|.+++||+++++++.+.|.+.++      +++++.||+||++++++.....  
T Consensus       284 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~  344 (590)
T 3kxw_A          284 -------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS  344 (590)
T ss_dssp             -------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred             -------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence                               0011158999999999999999999998873      4799999999999876654321  


Q ss_pred             -------------------------CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhh
Q 005406          459 -------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ  513 (698)
Q Consensus       459 -------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~  513 (698)
                                               ....+++|+|+++  ++|+|.+++..++.++   .|||+|+||+++.|||++|+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~  419 (590)
T 3kxw_A          345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE  419 (590)
T ss_dssp             CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred             ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence                                     1234678999998  8889966677666665   899999999999999999999


Q ss_pred             hcccccC------CC--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHH-hcCcCce--eEEEEEc--C
Q 005406          514 TREVIDG------DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVL--QCFIYGD--S  580 (698)
Q Consensus       514 t~~~f~~------~g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l-~~~p~V~--~~~V~g~--~  580 (698)
                      |++.|..      +|  ||+|||+|++| ||.|+|+||+||+||+ +|++|+|.|||++| ..+|.|.  +|+|++.  .
T Consensus       420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~  497 (590)
T 3kxw_A          420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE  497 (590)
T ss_dssp             HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred             HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence            9999953      24  99999999999 9999999999999998 89999999999999 8899998  7888874  3


Q ss_pred             CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceee-EEEEe--cCCCCCCCC
Q 005406          581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAK-AVTLM--PEPFSVENG  657 (698)
Q Consensus       581 ~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~-~i~~~--~~~p~~~~~  657 (698)
                      .++.+++++++.+...                   +..-.+.+.+.+++.+..    .|++|. .++++  +++|     
T Consensus       498 ~~~~~~~~v~~~~~~~-------------------~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~~~~lP-----  549 (590)
T 3kxw_A          498 HEYKLTVMCEVKNRFM-------------------DDVAQDNLFNEIFELVYE----NHQLEVHTIVLIPLKAMP-----  549 (590)
T ss_dssp             TEEEEEEEEEESCTTC-------------------CHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEETTCSC-----
T ss_pred             CCceEEEEEEeccccc-------------------cchhHHHHHHHHHHHHHH----HcCCceeEEEEECCCccC-----
Confidence            3567888888765310                   011112333344333321    244443 44554  7999     


Q ss_pred             ccCcccCCChHHHHHHHHH
Q 005406          658 LLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       658 ~~T~~GKi~R~~l~~~~~~  676 (698)
                       +|++|||+|++|++.|.+
T Consensus       550 -~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          550 -HTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             -CCSCHHHHHHHHHHHHHH
T ss_pred             -cCCCcHHHHHHHHHHHHc
Confidence             999999999999999875

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.4e-61  Score=533.57  Aligned_cols=400  Identities=19%  Similarity=0.205  Sum_probs=317.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...|+.++|+++++++||++|+.+....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|+++|++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35789999999999999999998862111223345789999999999999999999996 99999999999999999999


Q ss_pred             HHHhcCCeEEecCC---CCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce--eEEEEeCCCCCCCCCCCCCCCc
Q 005406          157 ACSAYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGV  231 (698)
Q Consensus       157 A~~~~G~~~vpl~~---~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~  231 (698)
                      ||+++|+++|||++   .++.+++.+++++++++++|++......+.+.....+..  ..++.++...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   888999999999999999999998877766654433321  1233322211            


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCC------CcEEEEcCC
Q 005406          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP------SDIYMSYLP  305 (698)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p  305 (698)
                               . ............++++++|+|||||||.||||++||+++++.+......+.+..      +|++++++|
T Consensus       169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  238 (480)
T 3t5a_A          169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP  238 (480)
T ss_dssp             ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred             ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence                     0 001112233457899999999999999999999999999998887777777776      999999999


Q ss_pred             hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (698)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (698)
                      ++|++++.. ++.+++.|+++++.+     .++..+++.++++++| +.++|+++..+........              
T Consensus       239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~--------------  303 (480)
T 3t5a_A          239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD--------------  303 (480)
T ss_dssp             TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG--------------
T ss_pred             CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc--------------
Confidence            999999875 678999999999986     3899999999999999 8899999887765311000              


Q ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhc
Q 005406          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIIS  453 (698)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~  453 (698)
                                              .......++||.+++||+++++++.++|.+.++      +.+++.||+||++++++
T Consensus       304 ------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  359 (480)
T 3t5a_A          304 ------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA  359 (480)
T ss_dssp             ------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred             ------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence                                    000111268999999999999999999998874      47999999999998776


Q ss_pred             ccCCCC-------------------------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcccccc
Q 005406          454 AIDKGD-------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY  508 (698)
Q Consensus       454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~  508 (698)
                      ......                         ...+++|+|++ ++++|+|.+++..++.++   .|||||+||++++|||
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~  435 (480)
T 3t5a_A          360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW  435 (480)
T ss_dssp             ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred             ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence            654332                         23358999999 999999966667776665   8999999999999999


Q ss_pred             CChhhhccccc-----------CCCceecCcEEEEecCCcEEEEcc
Q 005406          509 KNEVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       509 ~~~~~t~~~f~-----------~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+.|+++|+           .+|||+|||+|++| ||+|+|+||
T Consensus       436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999995           57899999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.7e-55  Score=461.30  Aligned_cols=313  Identities=16%  Similarity=0.156  Sum_probs=265.8

Q ss_pred             CCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhh
Q 005406          255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK  334 (698)
Q Consensus       255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~  334 (698)
                      .|+++||+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+++.|+++++.+.. ..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~  114 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN  114 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence            47899999999999999999999999999998888889999999999999999999999989999999999887632 23


Q ss_pred             HHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEE
Q 005406          335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR  414 (698)
Q Consensus       335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr  414 (698)
                      .++.++++++|++.++|+++..+++.....                                .           ..+++|
T Consensus       115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--------------------------------~-----------~l~~lr  151 (358)
T 4gs5_A          115 PLAGLDHADFDFVAMVPMQLQSILENSATS--------------------------------G-----------QVDRLG  151 (358)
T ss_dssp             TTTTCSSCCCSEEEECHHHHHHHHHCTTTG--------------------------------G-----------GGGGGC
T ss_pred             HHHHHHHhCCeEEEcChHHHHHhhcccccc--------------------------------c-----------cCCcce
Confidence            466788999999999999999887621100                                0           015899


Q ss_pred             EEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCcc
Q 005406          415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG  494 (698)
Q Consensus       415 ~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~G  494 (698)
                      .+++||+++++++.+++++ +++++++.||+||+++.++.........+.+|.+.|++++.+.+              .|
T Consensus       152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G  216 (358)
T 4gs5_A          152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG  216 (358)
T ss_dssp             SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred             EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence            9999999999999999987 59999999999999988887777777788999999999988754              69


Q ss_pred             EEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHH---hcCcCc
Q 005406          495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY---AKCKFV  571 (698)
Q Consensus       495 El~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l---~~~p~V  571 (698)
                      ||+++|+.                ..+|||+|||+|++|++| ++|+||+||+||+ +|+||+|.|||++|   .+||.|
T Consensus       217 el~~~g~~----------------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V  278 (358)
T 4gs5_A          217 CLHISGAV----------------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI  278 (358)
T ss_dssp             EEEEESGG----------------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred             ceEEeccc----------------ccCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence            99999863                258999999999999988 6778999999997 89999999999887   468999


Q ss_pred             eeEEEEE-cC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 005406          572 LQCFIYG-DS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTL  647 (698)
Q Consensus       572 ~~~~V~g-~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~  647 (698)
                      .+|+|++ .+   .++.++|+|++....                          ...++|+++++ .+|+.|++|+.|++
T Consensus       279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~--------------------------~~~~~l~~~l~-~~L~~~~~P~~i~~  331 (358)
T 4gs5_A          279 GNAFFCWWEPDAKLGQKLVLVIENAMPE--------------------------ALTERLTAEIR-SRVSTYENPKHIYF  331 (358)
T ss_dssp             CCCEEEEEEEETTTEEEEEEEEESCCCH--------------------------HHHHHHHHHHH-HHSCGGGSCSCEEE
T ss_pred             cEEEEEEecCCccCCEEEEEEEECCCCC--------------------------cCHHHHHHHHH-hhCCCCCCceEEEE
Confidence            9998864 33   246788888876532                          22456677775 67999999999999


Q ss_pred             ecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          648 MPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       648 ~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                      ++++|      +|++|||+|++|+++|++.
T Consensus       332 v~~lP------~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          332 AKAFA------KTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             ESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred             ECCcC------CCCCCChhHHHHHHHhhhh
Confidence            99999      9999999999999988654

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=5.7e-48  Score=421.51  Aligned_cols=349  Identities=17%  Similarity=0.161  Sum_probs=266.7

Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc---ccccCCCcEEEEcCCh-hh
Q 005406          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AH  308 (698)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h  308 (698)
                      +.+.+++.+..   +.......++++++|+|||||||.||||++||+++.........   .+++.++|++++.+|+ +|
T Consensus        72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~  148 (443)
T 2y4o_A           72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF  148 (443)
T ss_dssp             CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred             CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence            34566665432   12223457799999999999999999999999998776544332   4778999999999999 57


Q ss_pred             HHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406          309 IYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI  387 (698)
Q Consensus       309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~  387 (698)
                      ..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.....-.                     
T Consensus       149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------  207 (443)
T 2y4o_A          149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM---------------------  207 (443)
T ss_dssp             HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC---------------------
T ss_pred             ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC---------------------
Confidence            777777888899999998876 6999999999999999999999999988874321100                     


Q ss_pred             HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcch-hcccCCCCCCCCCcc
Q 005406          388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVG  466 (698)
Q Consensus       388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~~~~~~~~~~~~~vG  466 (698)
                          ..               ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. +...... ...+ ++
T Consensus       208 ----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~  266 (443)
T 2y4o_A          208 ----DP---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-PV  266 (443)
T ss_dssp             ----CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-EE
T ss_pred             ----Cc---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-eE
Confidence                00               0158999999999999999999999899999999999998443 3322221 1112 56


Q ss_pred             CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC-CcE-----EE
Q 005406          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-GRL-----KI  540 (698)
Q Consensus       467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~-G~l-----~i  540 (698)
                      .|.++++++|+|++++..++.++   .|||+|+|.            |++.| .++||+|||+|+++++ |++     +|
T Consensus       267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i  330 (443)
T 2y4o_A          267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI  330 (443)
T ss_dssp             ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred             EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence            67789999999976677777665   899999982            34556 6899999999999999 987     89


Q ss_pred             EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcCh--hHHHHHHHHcCCCcccHHHhhC
Q 005406          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP--DVLKDWAASQGIKFEDLEQLCN  615 (698)
Q Consensus       541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~--~~~~~~~~~~~~~~~~~~~~~~  615 (698)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+   ..+.++|+|++.+  +.          .        .
T Consensus       331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~----------~--------~  391 (443)
T 2y4o_A          331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA----------S--------V  391 (443)
T ss_dssp             CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT----------T--------C
T ss_pred             ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc----------c--------c
Confidence            9999999997 89999999999999999999999888732   3578899999876  21          0        0


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCc-ceeeEEEEe--cCCCCCCCCccCcccCCChHHHHH
Q 005406          616 DPRARAAVLAEMNAVGKEGQLRGF-EYAKAVTLM--PEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       616 ~~~~~~~i~~~l~~~~~~~~L~~~-~~p~~i~~~--~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                      .....+.+.+.++     ..|+.| ++|..|.++  +++|      +|++||++|...++
T Consensus       392 ~~~~~~~l~~~l~-----~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          392 TDGERAALARELQ-----HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR  440 (443)
T ss_dssp             CHHHHHHHHHHHH-----HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred             hhhHHHHHHHHHH-----HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence            0001112233333     234444 467788887  4899      99999999975443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2.5e-47  Score=415.48  Aligned_cols=329  Identities=16%  Similarity=0.151  Sum_probs=253.3

Q ss_pred             CCCC-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcc---cccccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEE
Q 005406          252 PPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS---LMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVG  326 (698)
Q Consensus       252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~  326 (698)
                      ...+ +++++|+|||||||.||||++||+++.+.+....   ..+++.++|++++++|+.|..+... .+.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            4456 8999999999999999999999999977665543   2357899999999999977666554 677899999999


Q ss_pred             EeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005406          327 FYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI  405 (698)
Q Consensus       327 ~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~  405 (698)
                      +.+ +++..+++.|++++||+++++|+++..|.+.....-..                         .            
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------~------------  203 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------P------------  203 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------T------------
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------c------------
Confidence            876 79999999999999999999999999998753321100                         0            


Q ss_pred             HHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCC
Q 005406          406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT  485 (698)
Q Consensus       406 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~  485 (698)
                         ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++.++.....  ....+|.|.++++++|+|++++..+
T Consensus       204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~~~v~i~d~~~g~~~  278 (436)
T 3qov_A          204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDCYLVEIIDPETGEPV  278 (436)
T ss_dssp             ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred             ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCceEEEEEECCCCCCC
Confidence               01589999999999999999999999999999999999996542222221  1223677888999999997778877


Q ss_pred             CCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCC------c---EEEEccCCCeEecCCceee
Q 005406          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG------R---LKIIDRKKNIFKLAQGEYV  556 (698)
Q Consensus       486 ~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G------~---l~i~GR~~d~ikls~G~~v  556 (698)
                      +.++   .|||+|+|.            |.+.| .++||+|||+|+++++|      +   ++|+||.||+||+ +|++|
T Consensus       279 ~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~v  341 (436)
T 3qov_A          279 PEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVNI  341 (436)
T ss_dssp             STTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEEE
T ss_pred             CCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEEE
Confidence            7765   899999983            34455 78999999999999998      5   6999999999998 89999


Q ss_pred             cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE  633 (698)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  633 (698)
                      +|.+||++|.+||+|.+++|++..+   ++.++|+|+++ +..        .         .+..-.+.+.+.+++.+  
T Consensus       342 ~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~---------~~~~~~~~l~~~l~~~l--  401 (436)
T 3qov_A          342 FPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T---------DNYIELEKIRRDIIRQL--  401 (436)
T ss_dssp             CHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C---------CCHHHHHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c---------cchhhHHHHHHHHHHHH--
Confidence            9999999999999999999988543   57899999988 320        0         01111122333333333  


Q ss_pred             CCCCCc-ceeeEEEEec--CCCCCCCCccCcccCCChHH
Q 005406          634 GQLRGF-EYAKAVTLMP--EPFSVENGLLTPTFKIKRPQ  669 (698)
Q Consensus       634 ~~L~~~-~~p~~i~~~~--~~p~~~~~~~T~~GKi~R~~  669 (698)
                         +.+ ++|..|.+++  ++|      +|+ ||++|..
T Consensus       402 ---~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~  430 (436)
T 3qov_A          402 ---KDEILVTPKVKLVKKGSLP------QSE-GKAVRVK  430 (436)
T ss_dssp             ---HHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred             ---HHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence               333 5677899998  999      999 9999853

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=3e-47  Score=415.07  Aligned_cols=344  Identities=17%  Similarity=0.131  Sum_probs=265.2

Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc---cccccCCCcEEEEcCCh-hhH
Q 005406          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS---LMVQFYPSDIYMSYLPL-AHI  309 (698)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~  309 (698)
                      .+.+++....   +.......++++++|+|||||||.||||++||+++...+....   ..++++++|++++.+|+ +|.
T Consensus        71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  147 (437)
T 2y27_A           71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT  147 (437)
T ss_dssp             BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred             CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence            4556665433   1123345779999999999999999999999999877654433   24778899999999998 788


Q ss_pred             HHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406          310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (698)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (698)
                      .++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.....-.                      
T Consensus       148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~----------------------  205 (437)
T 2y27_A          148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL----------------------  205 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred             cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence            88877888999999998776 6999999999999999999999999998874322100                      


Q ss_pred             cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcch-hcccCCCCCCCCCccC
Q 005406          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS  467 (698)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~~~~~~~~~~~~~vG~  467 (698)
                         ..               ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. ++..... . ...+|.
T Consensus       206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~-~~g~~~  265 (437)
T 2y27_A          206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-T-KDGPTI  265 (437)
T ss_dssp             ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-T-CSSCEE
T ss_pred             ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-C-CCceeE
Confidence               00               0158999999999999999999998889999999999998433 3322221 1 112566


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec-CCcE-----EEE
Q 005406          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-GGRL-----KII  541 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~-~G~l-----~i~  541 (698)
                      |.++++++|+|++++..++.++   .|||+|+|.            |++.| .++||+|||+|++++ +|++     +|+
T Consensus       266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~  329 (437)
T 2y27_A          266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT  329 (437)
T ss_dssp             CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred             ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence            7789999999976677777665   899999982            44556 689999999999999 6985     999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEc---CCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD---SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~---~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||.||+||+ +|++|+|.+||++|.+||+|.+++|++.   ..++.++|+|+++++..                  .+..
T Consensus       330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~------------------~~~~  390 (437)
T 2y27_A          330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA------------------PDTA  390 (437)
T ss_dssp             EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT------------------TCHH
T ss_pred             cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc------------------chhh
Confidence            999999997 8999999999999999999999888773   23578999999876420                  0000


Q ss_pred             HHHHHHHHHHHHHHhCCCCCc-ceeeEEEEe--cCCCCCCCCccCcccCCChHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGF-EYAKAVTLM--PEPFSVENGLLTPTFKIKRPQ  669 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~-~~p~~i~~~--~~~p~~~~~~~T~~GKi~R~~  669 (698)
                      -    .+++++.++ ..|+.| ++|..|.++  +++|      +|+ ||++|..
T Consensus       391 ~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~  432 (437)
T 2y27_A          391 A----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV  432 (437)
T ss_dssp             H----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred             h----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence            0    122333332 344555 477788888  5899      999 9999964

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=2.9e-30  Score=274.39  Aligned_cols=238  Identities=16%  Similarity=0.182  Sum_probs=175.6

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc---ccccccCCCcEEEEcCCh-hhHHHHHHHHHHHHhCcEEEEe
Q 005406          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPL-AHIYERANQIVSVYYGVAVGFY  328 (698)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~  328 (698)
                      ..++++++|+|||||||.||||+++|+++.+.+.+.   ....++.++|++++++|+ +|.+++...+.++..|+.++..
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~  167 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI  167 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence            477899999999999999999999999999888743   345678899999999999 9999999888889999944444


Q ss_pred             CCChh-----------------------hHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406          329 QGDNL-----------------------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (698)
Q Consensus       329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (698)
                      .+++.                       .+++.|+++++|++.++|+++..|++.....                     
T Consensus       168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~---------------------  226 (369)
T 3hgu_A          168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV---------------------  226 (369)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred             cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence            46777                       7888999999999999999999987631100                     


Q ss_pred             HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHH-HHh-CCceecccCcchhcchhcccCCCCCCCC
Q 005406          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK-VCF-GCQVMEGYGMTETSCIISAIDKGDNLSG  463 (698)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~  463 (698)
                                           ....+++|.+++||+++++++.+++. +.+ ++++++.||+||+++++..+..     .
T Consensus       227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~  280 (369)
T 3hgu_A          227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T  280 (369)
T ss_dssp             ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred             ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence                                 00003799999999999999999999 888 8999999999999876543221     1


Q ss_pred             CccCC------CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC--
Q 005406          464 HVGSP------NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG--  535 (698)
Q Consensus       464 ~vG~p------~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~--  535 (698)
                      ++|.|      +++++++|+|++++..++.|+   .|||+|++..            ++.+  --+|+|||++.+.+.  
T Consensus       281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~  343 (369)
T 3hgu_A          281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS  343 (369)
T ss_dssp             TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred             cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence            58999      999999999976788777765   8999999732            1111  124788888877543  


Q ss_pred             C-------cEEEEccCCCeEecCCcee
Q 005406          536 G-------RLKIIDRKKNIFKLAQGEY  555 (698)
Q Consensus       536 G-------~l~i~GR~~d~ikls~G~~  555 (698)
                      |       .+..++|.++..|+ .|.|
T Consensus       344 g~~~d~~~~v~~~~~~~~~~~i-~gv~  369 (369)
T 3hgu_A          344 GFAGDRLADIEPLKISEGRKVI-EGVY  369 (369)
T ss_dssp             TCSSCEEEEEEECC-------------
T ss_pred             CCcCcccccceeccccCCCcee-eecC
Confidence            2       35667888888887 5653

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.30  E-value=5.7e-12  Score=107.57  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      .|.|||||+ +|.||+|.|||++|.+||+|.+++|++.+   .++.++++|+..+..          .        .+..
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~   61 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG   61 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence            389999998 89999999999999999999999988743   346788888877632          0        1222


Q ss_pred             HHHHHHHHHHHHHHh-CCCCCcceeeEEEEec--CCCCCCCCccCcccCCCh
Q 005406          619 ARAAVLAEMNAVGKE-GQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKIKR  667 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~-~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi~R  667 (698)
                      ..+.+.++|++.++. .+++     ..+.+++  ++|      +| +||++|
T Consensus        62 ~~~~l~~~i~~~l~~~~gv~-----~~v~~v~~~~lP------rt-sGKi~R  101 (109)
T 3lax_A           62 RLQALTREITRQLKDEILVT-----PRVKLVPKGALP------KS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHSSC-----CEEEEECTTCSC------CC----CCC
T ss_pred             hhhhhHHHHHHHHHHHhCCc-----cceEEEcCCeec------CC-CCCcch
Confidence            223334444444431 1232     3566664  799      98 799988

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.93  E-value=6.2e-09  Score=113.41  Aligned_cols=133  Identities=14%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccCC-CCC-cEEEEEecCCCC-----
Q 005406          413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSP-NPA-CEIKLVDVPEMN-----  483 (698)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~~-----  483 (698)
                      +..+++||.   ......++..+ +.+++ ..|++||+...  ++......+...|.. +++ +-+..++.++..     
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v  376 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV  376 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence            667777873   44445555544 67777 99999996322  221111111222221 222 445566544321     


Q ss_pred             CCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec----CCcEEEEccCCCeEecCCceeecch
Q 005406          484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQGEYVAPE  559 (698)
Q Consensus       484 ~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~----~G~l~i~GR~~d~ikls~G~~v~p~  559 (698)
                      ...+.+.|..+||.|...+   |.|.              |++||++++..    ...+.|+||.++++.+ .|+++.+.
T Consensus       377 ~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~  438 (581)
T 4eql_A          377 DLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE  438 (581)
T ss_dssp             EGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred             CHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence            1223344568999998742   3332              89999999986    3579999999999997 89999999


Q ss_pred             HHHHHHhcC
Q 005406          560 KIENVYAKC  568 (698)
Q Consensus       560 eIE~~l~~~  568 (698)
                      +||+++.+.
T Consensus       439 ~v~~al~~a  447 (581)
T 4eql_A          439 DLFKAVSQA  447 (581)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999999643

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.88  E-value=3.2e-08  Score=107.95  Aligned_cols=131  Identities=12%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccC-CCCC-cEEEEEecCCCC-----
Q 005406          413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN-----  483 (698)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~~-----  483 (698)
                      +..++.||.   ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..++.++..     
T Consensus       307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~  381 (609)
T 4b2g_A          307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG-L-NLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR  381 (609)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE-E-CSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred             EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee-e-ecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence            666777773   33445555544 67776 99999997432 2 2111111122222 1222 445566544320     


Q ss_pred             -C------CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec----CCcEEEEccCCCeEecCC
Q 005406          484 -Y------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       484 -~------~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~----~G~l~i~GR~~d~ikls~  552 (698)
                       .      +.+.+.|..+||.|...   .|.|.              |++||+++++.    ...+.|+||.+++|++ .
T Consensus       382 ~~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~  443 (609)
T 4b2g_A          382 DSPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D  443 (609)
T ss_dssp             SSCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             CCCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence             0      12333455899999753   35553              99999999974    3689999999999997 8


Q ss_pred             ceeecchHHHHHHh
Q 005406          553 GEYVAPEKIENVYA  566 (698)
Q Consensus       553 G~~v~p~eIE~~l~  566 (698)
                      |++|.+.+||+++.
T Consensus       444 Geki~~~~v~~av~  457 (609)
T 4b2g_A          444 SDKTDEAELQKAVD  457 (609)
T ss_dssp             SCCBCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHH
Confidence            99999999999996

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.74  E-value=1.3e-07  Score=102.72  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             CcEE---EEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccC-CCCC-cEEEEEecCCCC
Q 005406          411 GRVR---FMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN  483 (698)
Q Consensus       411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~~  483 (698)
                      ++++   .++.|+.   ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..+..++..
T Consensus       302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~  376 (581)
T 4epl_A          302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETG  376 (581)
T ss_dssp             TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred             CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEeccccc
Confidence            4564   4455543   33345555545 67777 99999996332 2 2211122222222 2233 334455433221


Q ss_pred             -------CCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC----CcEEEEccCCCeEecCC
Q 005406          484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQ  552 (698)
Q Consensus       484 -------~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~----G~l~i~GR~~d~ikls~  552 (698)
                             .+.+.+.|..+||.|...+   |-|.              |++||++++..-    ..+.|+||.++++++ .
T Consensus       377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~  438 (581)
T 4epl_A          377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N  438 (581)
T ss_dssp             ---CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             CCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence                   1123344568999998742   3332              999999998742    479999999999998 7


Q ss_pred             ceeecchHHHHHHhc------Cc--CceeEEEEEcC
Q 005406          553 GEYVAPEKIENVYAK------CK--FVLQCFIYGDS  580 (698)
Q Consensus       553 G~~v~p~eIE~~l~~------~p--~V~~~~V~g~~  580 (698)
                      |+++.+.+||+++.+      ..  .|.+-.++.+.
T Consensus       439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~  474 (581)
T 4epl_A          439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV  474 (581)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC
T ss_pred             eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC
Confidence            999999999999954      22  35666666543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.58  E-value=2.1  Score=45.13  Aligned_cols=121  Identities=11%  Similarity=0.066  Sum_probs=87.4

Q ss_pred             CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005406           93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL  168 (698)
Q Consensus        93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl  168 (698)
                      ++.++++..  ..|.+|.  ...+|.+.+...+..++..+...|+.++|++....+-+  ...+...++++..|+.++++
T Consensus        89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            455564433  2555553  34679999988888888888888999999998888753  34445678889999999877


Q ss_pred             CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhc------CCceeEEEEeC
Q 005406          169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVG  216 (698)
Q Consensus       169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~ii~~~  216 (698)
                      .. ..++.+...+++.++.+++..+.....+.+....      .+.++.+++-+
T Consensus       167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG  219 (437)
T 2y27_A          167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA  219 (437)
T ss_dssp             CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred             CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence            65 4788999999999999999988877666543321      24566666543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=90.99  E-value=2.5  Score=44.53  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=87.6

Q ss_pred             CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005406           93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL  168 (698)
Q Consensus        93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl  168 (698)
                      ++.++++..  ..|.+|.  ...+|.+.+...+..++..+...|+.++|++....+-+  ...+...++++..|+.++++
T Consensus        91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            455554432  2565554  34579999988888888888888999999998888753  34455678888999998887


Q ss_pred             CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeC
Q 005406          169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVG  216 (698)
Q Consensus       169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~  216 (698)
                      ... .++.+...+++.++.+++..+.....+.+...      ..+.++.+++-+
T Consensus       169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG  221 (443)
T 2y4o_A          169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA  221 (443)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred             CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence            664 78889999999999999998887666554322      124566666544

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=89.97  E-value=2.2  Score=44.93  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=88.6

Q ss_pred             CCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 005406           94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPLY  169 (698)
Q Consensus        94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~  169 (698)
                      +.++++..  ..|.+|.  ...+|.+.+...+..++..+...|+.++|++..+.+-+  ...+..+++++..|+.+++..
T Consensus        86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            44554433  2555543  34679999998888888888888999999999888743  445556788899999988876


Q ss_pred             CCCCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeCC
Q 005406          170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG  217 (698)
Q Consensus       170 ~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~~  217 (698)
                      .. .++.+...+++.++.+++..+.....+.+...      .++.++.+++-+.
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            54 67889999999999999998887766654422      1456776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	698
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-76
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-71
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-67
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-63
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	9e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-46
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-46

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  254 bits (650), Expect = 6e-76
 Identities = 93/649 (14%), Positives = 189/649 (29%), Gaps = 131/649 (20%)

Query: 72  FPDHPEIGTLHDNFIY-----AVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEI 126
           + D    GTL  N         ++   D   +   +         K ++Y E+       
Sbjct: 66  YED----GTL--NLAANCLDRHLQENGDRTAI---IWEGDDTSQSKHISYRELHRDVCRF 116

Query: 127 GSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI 186
            + LL  G++KG  + +Y+   PE  +   AC+    +   ++    P+AV   +  +  
Sbjct: 117 ANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSS 176

Query: 187 EAIFCIPQTLNTLLSFI-----------SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
             +    + +    S               + SV  ++V+      +             
Sbjct: 177 RLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRD-----L 231

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQF 294
           + +   +  S          ED   I YTSG+TG PKG + T G  +   A  F  +  +
Sbjct: 232 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY 291

Query: 295 YPSDIYMSYLPLAHIYERANQIVS-VYYGVAVGFYQG-----DNLKLMDDLAVLKPTIFP 348
           +P DIY     +  +   +  +   +  G     ++G        ++   +   +  I  
Sbjct: 292 HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILY 351

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
           + P     + A                                   K  +          
Sbjct: 352 TAPTAIRALMA--------------------------------EGDKAIEGTDR------ 373

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETS--CIISAIDKGDNLSG 463
               +R +GS   P++P+  ++     G   C V++ +  TET    I       +  +G
Sbjct: 374 --SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG 431

Query: 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHP---RGEICVRGPI--VFQGYYKNEVQTRE-- 516
               P    +  LVD       +E  P      G + +        +  + +  +  +  
Sbjct: 432 SATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTY 484

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
                    +GD       G   I  R  ++  ++ G  +   +IE+       + +  +
Sbjct: 485 FSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAV 543

Query: 577 YG---DSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE 633
            G         + A V      L          + ++                       
Sbjct: 544 VGIPHAIKGQAIYAYV-----TLNHGEEPSPELYAEVRNWVRK----------------- 581

Query: 634 GQLRGFEYAKAVTLMPE-PFSVENGLLTPTFKIKRPQAKERFAKAISNM 681
            ++        +      P        T + KI R   ++  A   SN+
Sbjct: 582 -EIGPLATPDVLHWTDSLP-------KTRSGKIMRRILRKIAAGDTSNL 622

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  239 bits (610), Expect = 3e-71
 Identities = 111/615 (18%), Positives = 194/615 (31%), Gaps = 117/615 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            L D    A   +   + +          G     TY EV    + +  GL   G+  G 
Sbjct: 12  NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+     N    L    A      +       L P  + Y++NHAE + +   P  L  +
Sbjct: 67  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
            +   E+ +V   VV+  K                       +                 
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGEEADPVRVPERAAC 172

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYERANQIV 317
            + YT+GTTG PKG V +H  L+ +    S          D+ +  +P+ H+        
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232

Query: 318 SVYYGVAVGFY--QGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
           +   G        + D   L++       T    VP ++  +                  
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274

Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF 435
                                     + +        +R +  G S     ++   +   
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER-M 309

Query: 436 GCQVMEGYGMTETSCIIS-----------AIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           G +V +GYG+TETS ++            + ++   L    G P P   +++ D  E   
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368

Query: 485 TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544
             +D     GE+ ++GP +  GYY NE  TR  +  DG+  TGDI +W   G ++I DR 
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAA 601
           K++ K   GE+++   +EN       V +  +       +    +A+V    +       
Sbjct: 428 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE-- 484

Query: 602 SQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSVENGLLT 660
                 E  E L                   +     ++   A     E P        T
Sbjct: 485 ------ELNEHLL------------------KAGFAKWQLPDAYVFAEEIP-------RT 513

Query: 661 PTFKIKRPQAKERFA 675
              K  +   +E++ 
Sbjct: 514 SAGKFLKRALREQYK 528

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  229 bits (584), Expect = 2e-67
 Identities = 123/614 (20%), Positives = 206/614 (33%), Gaps = 93/614 (15%)

Query: 73  PDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
           P +P E GT  +    A++ Y         +            TY E       +   + 
Sbjct: 10  PFYPLEDGTAGEQLHKAMKRYALVP---GTIAFTDAHIEVNI-TYAEYFEMSVRLAEAMK 65

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
            +GL    RI +   N  ++ +             P  D      +   +N ++   +F 
Sbjct: 66  RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             + L  +L+   ++P +  I+++  K ++       S    ++             P  
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF---QSMYTFVTSHLPPGFNEYDFVPES 182

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAH 308
             + + IA I  +SG+TG PKG  L H       +     +   Q  P    +S +P  H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242

Query: 309 IYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA 367
            +     +  +  G   V  Y+ +    +  L   K      VP L++            
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDV 427
               +  L      S    I SG                            GA       
Sbjct: 294 ----KSTLIDKYDLSNLHEIASG----------------------------GAPLSKEVG 321

Query: 428 MDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSE 487
               K      + +GYG+TET+  I    +GD+  G VG   P  E K+VD+        
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381

Query: 488 DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
           +Q    GE+CVRGP++  GY  N   T  +ID DGWLH+GDI  W       I+DR K++
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQG 604
            K   G  VAP ++E++  +   +    + G   D       A+V ++          + 
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--------KT 489

Query: 605 IKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSVENGLLTPTF 663
           +  +++          A  L                    V  + E P          T 
Sbjct: 490 MTEKEIVDYVASQVTTAKKL-----------------RGGVVFVDEVP-------KGLTG 525

Query: 664 KIKRPQAKERFAKA 677
           K+   + +E   KA
Sbjct: 526 KLDARKIREILIKA 539

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  220 bits (562), Expect = 1e-63
 Identities = 100/634 (15%), Positives = 205/634 (32%), Gaps = 103/634 (16%)

Query: 72  FPDHPEIGTLHDNFIY-----AVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEI 126
           F +    G L  N  Y          P+ K +   +      G    +TY E+     ++
Sbjct: 53  FLN----GQL--NACYNCVDRHALKTPNKKAI---IFEGDEPGQGYSITYKELLEEVCQV 103

Query: 127 GSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
              L +  G++KG  + +Y+   PE +I   A S    I   ++     ++++  +N  +
Sbjct: 104 AQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGD 163

Query: 186 IEAIFC---------IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236
            + +           + +T   +   + E P V  ++V    +    +  +         
Sbjct: 164 SKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPR----DLD 219

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFY 295
              + +   +  P  P   ED   + YTSG+TG PKG   +    +             +
Sbjct: 220 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH 279

Query: 296 PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYN 355
             D++ +   +  I           Y V      G    + +         +P+  R ++
Sbjct: 280 QEDVFFTAGDIGWIT-------GHTYVVYGPLLYGCATLVFE-----GTPAYPNYSRYWD 327

Query: 356 RIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRF 415
            I          + T    L  A  +  +   +                        +R 
Sbjct: 328 IIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK----------------------SLRC 365

Query: 416 MGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDKGDNL---SGHVGSPN 469
           +GS   P++ +V ++     G     +++ Y  TE+   +     G       G    P 
Sbjct: 366 LGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF 425

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLH 525
              +  ++D       +    H  G + V+   P   +  +KN  +  +       G+  
Sbjct: 426 FGIDAVVLDPNTGEELNT--SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF 483

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFN 582
           TGD       G + I+ R  ++  +  G  ++  +IE    +   V +C + G   D   
Sbjct: 484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 542

Query: 583 SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYA 642
             + A V     VLK+ ++      ++L+ +                      +  F   
Sbjct: 543 QAVAAFV-----VLKNKSSWSTATDDELQDIKKHLVFTVR-----------KDIGPFAAP 586

Query: 643 KAVTLMPE-PFSVENGLLTPTFKIKRPQAKERFA 675
           K + L+ + P        T + KI R   ++  A
Sbjct: 587 KLIILVDDLP-------KTRSGKIMRRILRKILA 613

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  174 bits (441), Expect = 9e-48
 Identities = 83/544 (15%), Positives = 172/544 (31%), Gaps = 95/544 (17%)

Query: 73  PDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF 132
            ++P   T+H  F   V   P+       V +   V   + +TY E++    ++    + 
Sbjct: 17  AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67

Query: 133 HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI 192
            G+ K   +G+ +    +  I   A        VP+      + ++Y+++ ++   +   
Sbjct: 68  KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127

Query: 193 PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCP 252
              ++ L+  I     V +      K     +L                          P
Sbjct: 128 KHLVH-LIHNIQFNGQVEIFEEDTIKIREGTNLH------------------------VP 162

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312
            K  D+A + YTSGTTG PKG +L H  + +    F   +     D    +  ++     
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222

Query: 313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
               +++  G ++                          +                    
Sbjct: 223 WEMFMALLTGASLYIIL--------------KDTINDFVKFE------------------ 250

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                       Q I   +             +       ++ + +  S  SP +++  K
Sbjct: 251 ------------QYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVN--K 296

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
                  +  YG TET+   +         GH        +   + + + N         
Sbjct: 297 WKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQ-LKSVGE 355

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
            GE+C+ G  + +GY+K    T +         G+    TGD   WL  G ++ + R  N
Sbjct: 356 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 415

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV----AVDPDVLKDW 599
             K+  G  V  E++E++  K  ++ +  +           L A       +  + L+ +
Sbjct: 416 QVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQF 474

Query: 600 AASQ 603
           ++ +
Sbjct: 475 SSEE 478

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  170 bits (432), Expect = 1e-46
 Identities = 96/604 (15%), Positives = 172/604 (28%), Gaps = 111/604 (18%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+++    A    PD+  L   V   G       +T+ E+ A  + + + L   GL+   
Sbjct: 3   TVNEMLRRAATRAPDHCAL--AVPARG-----LRLTHAELRARVEAVAARLHADGLRPQQ 55

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ +   N  + +I   A      +   L   L    +  ++   E+ A          +
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR--QV 113

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
              I +  S   I+ +G                              P      +P   A
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGEPYSY-----------------GPPIEDPQREPAQPA 156

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            I YTSGTTG PK A++      S V   S  V        +    +   +      V V
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216

Query: 320 YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379
                 G Y         D   L      +           +  A   +G          
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------- 266

Query: 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
                                            +R +    + +   V++ +      + 
Sbjct: 267 --------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK 300

Query: 440 MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---- 495
           +  YG TE    +             G  +    +++           D+    GE    
Sbjct: 301 VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEGEL 353

Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
           I       F GY      T E +  DGW  T D+ +W P G ++I+ R  ++     GE 
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGEN 411

Query: 556 VAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQ 612
           + P +IE V      V +  + G     +   + A V             + +  + L+ 
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG--------ETLSADALDT 463

Query: 613 LCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSVENGLLTPTFKIKRPQAK 671
            C                 +  +L  F+  K   ++ + P            K+ R Q  
Sbjct: 464 FC-----------------RSSELADFKRPKRYFILDQLP-------KNALNKVLRRQLV 499

Query: 672 ERFA 675
           ++ +
Sbjct: 500 QQVS 503

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  171 bits (434), Expect = 1e-46
 Identities = 103/609 (16%), Positives = 182/609 (29%), Gaps = 111/609 (18%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T  D        Y D   +           G    +Y E+      + +G    G+Q+  
Sbjct: 26  TFGDLLRDRAAKYGDRIAI---------TCGNTHWSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ + L N  E+  V  A      + V    +     + Y    AE  A           
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 200 L-----SFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                    S++P++  I+V G  +E LP                     + P      K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
             D+A +  + G+TG  K    TH + I ++     +     S +Y++ LP+AH Y  ++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS 240

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
                                               P +   +YAG    +  S +  + 
Sbjct: 241 ------------------------------------PGVLGVLYAGGRVVLSPSPSPDDA 264

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC 434
                        +         D     +        ++ +  G +  S +    +K  
Sbjct: 265 FPLIEREKVTITALVPPLAMVWMDAASSRRDDLS---SLQVLQVGGAKFSAEAARRVKAV 321

Query: 435 FGCQVMEGYGMTE-TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
           FGC + + +GM E         D  + +    G P    +   V         + +P   
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           G +  RGP   +GYYK E         DG+  TGDI      G + +  R K+      G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWAASQGIKFEDL 610
           E VA E++EN       V    +               +     + +D A        +L
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI-----IPRDEAPKA----AEL 488

Query: 611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPE-PFSVENGLLTPTFKIKRPQ 669
           +                    +E  L  ++    V  +   P        T   K+ +  
Sbjct: 489 KAFL-----------------RERGLAAYKIPDRVEFVESFP-------QTGVGKVSKKA 524

Query: 670 AKERFAKAI 678
            +E  ++ +
Sbjct: 525 LREAISEKL 533

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	698
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.4e-77  Score=678.77  Aligned_cols=519  Identities=17%  Similarity=0.222  Sum_probs=421.2

Q ss_pred             HHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 005406           81 LHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSA  160 (698)
Q Consensus        81 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~  160 (698)
                      ...+|+++++.+||++|+++.   ....++.+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus        74 ~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~  150 (643)
T d1pg4a_          74 AANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR  150 (643)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence            456777889999999999875   33345578899999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhh--cCCceeEEEEeCCCCCCCCCCCCCC
Q 005406          161 YSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFIS--EIPSVHLIVVVGGKDEHLPSLPSTS  229 (698)
Q Consensus       161 ~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~  229 (698)
                      +|++++|+++.++++++.+++++++++++|+++..         ...+...+.  ..+.+..++++.........    .
T Consensus       151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~----~  226 (643)
T d1pg4a_         151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW----Q  226 (643)
T ss_dssp             HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC----C
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc----c
Confidence            99999999999999999999999999999997642         222222222  35667777777654322111    1


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCChhh
Q 005406          230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLPLAH  308 (698)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~h  308 (698)
                      ......+.+...... ........+++|+++|+|||||||.||||++||++++.... .....+++.++|++++++|++|
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~  305 (643)
T d1pg4a_         227 EGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW  305 (643)
T ss_dssp             BTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred             cccchhhhhhhcccC-cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHH
Confidence            112244455544332 23344556889999999999999999999999999765544 3444578899999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005406          309 IYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS  382 (698)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  382 (698)
                      ++++.. ++.+|+.|+++++++     .++..+++.++++++|+++++|+++..|.+......                 
T Consensus       306 ~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~-----------------  368 (643)
T d1pg4a_         306 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-----------------  368 (643)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-----------------
T ss_pred             HHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc-----------------
Confidence            999876 567899999999986     378899999999999999999999998876311110                 


Q ss_pred             HHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccCCCC
Q 005406          383 KKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDKGD  459 (698)
Q Consensus       383 k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~~  459 (698)
                                             +....++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++...+..
T Consensus       369 -----------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~  425 (643)
T d1pg4a_         369 -----------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA  425 (643)
T ss_dssp             -----------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT
T ss_pred             -----------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCc
Confidence                                   0001158999999999999999999998884   77999999999988766554432


Q ss_pred             --CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhcccc--cCCCceecCcEEEEe
Q 005406          460 --NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDIGLWL  533 (698)
Q Consensus       460 --~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f--~~~gw~~TGDlg~~~  533 (698)
                        .+.+++|+|++|++++|+| ++++.++.++   .|||+|+|  |+++.|||++++.+.+.+  ..+|||+|||+|++|
T Consensus       426 ~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d  501 (643)
T d1pg4a_         426 IELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD  501 (643)
T ss_dssp             CCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC
T ss_pred             cCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEEC
Confidence              5678999999999999999 5566655554   89999999  578999999999887765  458999999999999


Q ss_pred             cCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccH
Q 005406          534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDL  610 (698)
Q Consensus       534 ~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~  610 (698)
                      +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++|+|+++++.          .    
T Consensus       502 ~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~----------~----  566 (643)
T d1pg4a_         502 EDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E----  566 (643)
T ss_dssp             TTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C----
T ss_pred             CCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCC----------C----
Confidence            99999999999999997 899999999999999999999999999543   57899999998742          1    


Q ss_pred             HHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406          611 EQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM  681 (698)
Q Consensus       611 ~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l  681 (698)
                          .+    ..+.++|+++++ .+|++|++|+.|++++++|      +|++||++|++|++++..+..++
T Consensus       567 ----~~----~~~~~~i~~~~~-~~L~~~~vP~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~~~~~  622 (643)
T d1pg4a_         567 ----PS----PELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL  622 (643)
T ss_dssp             ----CC----HHHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred             ----CC----HHHHHHHHHHHH-hhCCcccCccEEEEECCCC------CCCCcCccHHHHHHHhcCCcccc
Confidence                11    234556777775 6899999999999999999      99999999999999987654443

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-76  Score=673.07  Aligned_cols=533  Identities=16%  Similarity=0.190  Sum_probs=416.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      +..+.+|+++++++||++|+++.   ..+.+..+++||+||.++++++|++|+ ++|+++||+|+|+++|+++|++++||
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA  135 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  135 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            44588899999999999999875   334456788999999999999999997 68999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccc---------hHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCC
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST  228 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~  228 (698)
                      |+++|++++|+++.++++++.++++++++++++++...         ...+.........+................   
T Consensus       136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  212 (640)
T d1ry2a_         136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF---  212 (640)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC---
T ss_pred             hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc---
Confidence            99999999999999999999999999999999998643         223334444455555555554433221111   


Q ss_pred             CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc-cccccCCCcEEEEcCChh
Q 005406          229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS-LMVQFYPSDIYMSYLPLA  307 (698)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~  307 (698)
                      .......+....... .......+..++++++|+|||||||.||||+++|++++....... ..+.+.++|++++++|++
T Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  291 (640)
T d1ry2a_         213 HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIG  291 (640)
T ss_dssp             CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTT
T ss_pred             ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchh
Confidence            111122333332222 223344556789999999999999999999999999877654443 357889999999999999


Q ss_pred             hHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 005406          308 HIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYN  381 (698)
Q Consensus       308 h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  381 (698)
                      |+++... ++.+++.|+++++++     .++..+++.|+++++|++.++|+++..|.+.....                 
T Consensus       292 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-----------------  354 (640)
T d1ry2a_         292 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY-----------------  354 (640)
T ss_dssp             SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS-----------------
T ss_pred             hhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc-----------------
Confidence            9999876 677899999998876     27889999999999999999999998775421000                 


Q ss_pred             HHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccCCC
Q 005406          382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDKG  458 (698)
Q Consensus       382 ~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~  458 (698)
                                  ...+           ..++||.+++||+++++++.+++.+.+|   +.++++||+||++..++.....
T Consensus       355 ------------~~~~-----------~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~  411 (640)
T d1ry2a_         355 ------------IENH-----------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG  411 (640)
T ss_dssp             ------------SSSC-----------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT
T ss_pred             ------------cccC-----------CCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCC
Confidence                        0000           1158999999999999999999999886   5699999999998776654443


Q ss_pred             C---CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhcccc--cCCCceecCcEEE
Q 005406          459 D---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDIGL  531 (698)
Q Consensus       459 ~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f--~~~gw~~TGDlg~  531 (698)
                      .   .+++++|+|++|++++|+|.+++.......  ..|||+++|  |+++.|||++++.|.+.|  +.+|||+|||+|+
T Consensus       412 ~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~  489 (640)
T d1ry2a_         412 GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA  489 (640)
T ss_dssp             TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEE
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCcee
Confidence            3   567899999999999999955444332222  369999998  689999999999999887  5579999999999


Q ss_pred             EecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcc
Q 005406          532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFE  608 (698)
Q Consensus       532 ~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~  608 (698)
                      +|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++   ++.++|+|++.+........       
T Consensus       490 ~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~-------  561 (640)
T d1ry2a_         490 KDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTAT-------  561 (640)
T ss_dssp             ECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------------
T ss_pred             ECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccc-------
Confidence            9999999999999999996 899999999999999999999999999553   57899999998754211100       


Q ss_pred             cHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHh
Q 005406          609 DLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYA  683 (698)
Q Consensus       609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~  683 (698)
                              ++..+.+.++|.++++ .+|++|++|+.|++++++|      +|++|||+|++|++++..+.+++.+
T Consensus       562 --------~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~~~~~~d  621 (640)
T d1ry2a_         562 --------DDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQLGD  621 (640)
T ss_dssp             -----------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC--------
T ss_pred             --------hHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCCC------CCCCcCccHHHHHHHHhCCccccCC
Confidence                    0111234566777775 6899999999999999999      9999999999999999887776655

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-75  Score=651.71  Aligned_cols=502  Identities=22%  Similarity=0.298  Sum_probs=390.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (698)
Q Consensus        77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l  156 (698)
                      ...||+++|+++++++||++|+++.   +  .++.+++||+||++++.++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus         9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   83 (534)
T d1v25a_           9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   83 (534)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence            3458999999999999999999875   2  3456789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (698)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (698)
                      ||+++|++++|+++.++.+++.++++++++++++++.............++.++.++.........          ....
T Consensus        84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  153 (534)
T d1v25a_          84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG----------YLAY  153 (534)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTT----------CEEH
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccc----------cccc
Confidence            999999999999999999999999999999999999998888888887888887777655432110          0111


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc--cccccCCCcEEEEcCChhhHHHHHH
Q 005406          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                      ... .   ..........++++++|+|||||||.||||+++|.+++.......  ..+.....|++++++|++|.+++..
T Consensus       154 ~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~  229 (534)
T d1v25a_         154 EEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL  229 (534)
T ss_dssp             HHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred             ccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc
Confidence            111 1   112234456789999999999999999999999999987654433  3366788999999999999999999


Q ss_pred             HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (698)
                      .+..+..|++.++..  .++..+...+.++++|++.++|.++..+.......                            
T Consensus       230 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~----------------------------  281 (534)
T d1v25a_         230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST----------------------------  281 (534)
T ss_dssp             HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH----------------------------
T ss_pred             cceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc----------------------------
Confidence            888888888888765  68999999999999999999999998887643211                            


Q ss_pred             CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CC
Q 005406          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NL  461 (698)
Q Consensus       393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~  461 (698)
                                    ....++||.+++||+++++++.+++++ ++..++++||+||++.+++......           ..
T Consensus       282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~  346 (534)
T d1v25a_         282 --------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL  346 (534)
T ss_dssp             --------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHH
T ss_pred             --------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccc
Confidence                          112268999999999999999999886 6999999999999998776543322           12


Q ss_pred             CCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      .+++|+|++|++++|+| ++++..+.+. ++.|||+|+|++++.|||++++.|++.|..||||+|||+|++|+||.|+++
T Consensus       347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~~-~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~  424 (534)
T d1v25a_         347 KAKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK  424 (534)
T ss_dssp             HTSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred             cccceeccCCcEEEEEC-CCCCCCCCCC-CeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEe
Confidence            46899999999999999 5556555432 248999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||+||+||+ +|++|+|.+||++|.+||+|.||+|+|.++   ++.++|+|+++.+..                      
T Consensus       425 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~----------------------  481 (534)
T d1v25a_         425 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP----------------------  481 (534)
T ss_dssp             EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------------
T ss_pred             cccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC----------------------
Confidence            999999997 899999999999999999999999998543   567899998876421                      


Q ss_pred             HHHHHHHHHH-HHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406          619 ARAAVLAEMN-AVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK  676 (698)
Q Consensus       619 ~~~~i~~~l~-~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~  676 (698)
                          ..+++. .+++ ..|+.|++|+.|++++++|      +|++|||+|++|+++|++
T Consensus       482 ----~~~~~~~~~~~-~~l~~~~~P~~i~~~~~lP------~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         482 ----TPEELNEHLLK-AGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             -----------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             ----CHHHHHHHHHH-hcCCcCCCccEEEEECCCC------CCCCccccHHHHHHHHHh
Confidence                012222 2343 6899999999999999999      999999999999998854

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.6e-74  Score=641.45  Aligned_cols=506  Identities=23%  Similarity=0.310  Sum_probs=407.9

Q ss_pred             CCCHHHHHHHHHHhC---CCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           78 IGTLHDNFIYAVENY---PDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~---pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      ..|++++|.++++++   |+++|+.+.       +..+.+||+||++++.++|++|+++|+++||+|+|+++|+++|+++
T Consensus        16 ~~t~~~~l~~~~~~~~~~P~~~a~~d~-------~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~   88 (541)
T d1lcia_          16 DGTAGEQLHKAMKRYALVPGTIAFTDA-------HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP   88 (541)
T ss_dssp             SSCHHHHHHHHHHHHHTSTTCEEEEET-------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHH
T ss_pred             CCCHHHHHHHHHHhhCCCCCeEEEEeC-------CCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHH
Confidence            468999999999998   555555432       1235699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      ++||+++|++++|+++.++.+++.++|++++++++|++.+..+.+.++...++..+.+++++.....       .  .+.
T Consensus        89 ~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~  159 (541)
T d1lcia_          89 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------Q--GFQ  159 (541)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB-------T--TBE
T ss_pred             HHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc-------c--ccc
Confidence            9999999999999999999999999999999999999999999988888889999988887654321       1  112


Q ss_pred             eHHHHHhcC------CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCC
Q 005406          235 SYLQLQSQG------CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLP  305 (698)
Q Consensus       235 ~~~~~~~~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p  305 (698)
                      .+.+.....      .....+.....++++++|+|||||||.||||++||++++.........   ..+.+++++++++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (541)
T d1lcia_         160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP  239 (541)
T ss_dssp             EHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred             hhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence            333333211      111223344567899999999999999999999999998776655443   45778999999999


Q ss_pred             hhhHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406          306 LAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (698)
Q Consensus       306 l~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (698)
                      ++|.++....+..+..|+..+... .+.......+..+++|.++.+|.++..+.......                    
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~--------------------  299 (541)
T d1lcia_         240 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID--------------------  299 (541)
T ss_dssp             TTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG--------------------
T ss_pred             ccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccc--------------------
Confidence            999999999888888888877766 78899999999999999999999998887521110                    


Q ss_pred             HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCC-ceecccCcchhcchhcccCCCCCCCC
Q 005406          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSG  463 (698)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~  463 (698)
                                            .....+++.+++||+++++.+.+++.+.++. .++++||+||+++.++.........+
T Consensus       300 ----------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  357 (541)
T d1lcia_         300 ----------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPG  357 (541)
T ss_dssp             ----------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CC
T ss_pred             ----------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCC
Confidence                                  0111589999999999999999999988864 68999999999998888877778889


Q ss_pred             CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (698)
Q Consensus       464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR  543 (698)
                      ++|+|+|+++++|+|.+++..++.++   .|||+|+|++++.|||++++.+...+..+|||+|||+|++|++|.++++||
T Consensus       358 svG~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR  434 (541)
T d1lcia_         358 AVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR  434 (541)
T ss_dssp             CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC--
T ss_pred             ccccccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeee
Confidence            99999999999999987777777776   899999999999999999999999998999999999999999999999999


Q ss_pred             CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR  620 (698)
Q Consensus       544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (698)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|++.+   .++.++|+|++.++.        ..+              
T Consensus       435 ~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~--------------  491 (541)
T d1lcia_         435 LKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK--------TMT--------------  491 (541)
T ss_dssp             ---CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred             ecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------CCC--------------
Confidence            9999997 89999999999999999999999999843   346889999987642        111              


Q ss_pred             HHHHHHHHHHHHhCCCCCcc-eeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406          621 AAVLAEMNAVGKEGQLRGFE-YAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA  677 (698)
Q Consensus       621 ~~i~~~l~~~~~~~~L~~~~-~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~  677 (698)
                         .++|+++++ .+|++++ +|+.|++++++|      +|++|||+|++|++++.++
T Consensus       492 ---~~~l~~~~~-~~l~~~~~~p~~i~~v~~lP------~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         492 ---EKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             ---HHHHHHHHH-HHSCGGGSCTTEEEEESSCC------C-----CCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHH-HhCCccccCCcEEEEeCCCC------cCCCcCccHHHHHHHHHHh
Confidence               234555554 4566654 789999999999      9999999999999998764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.8e-70  Score=609.63  Aligned_cols=475  Identities=19%  Similarity=0.269  Sum_probs=397.5

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (698)
Q Consensus        75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~  154 (698)
                      .|...||+++|+++|+++||++|+++.         .+.+||+||+++++++|.+|+++|+++||+|+|+++|+++|+++
T Consensus        19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~   89 (514)
T d1amua_          19 YPRDKTIHQLFEEQVSKRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG   89 (514)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHhCCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHH
Confidence            457889999999999999999999763         25699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (698)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  234 (698)
                      +|||+++|++++|+++.++.+++.+++++++++++|++......+.....   .. .........               
T Consensus        90 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~-~~~~~~~~~---------------  150 (514)
T d1amua_          90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NG-QVEIFEEDT---------------  150 (514)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CS-EEEECCCST---------------
T ss_pred             HHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc---cc-ccccccccc---------------
Confidence            99999999999999999999999999999999999999877665443221   11 111111110               


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (698)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (698)
                            ...........+..++++++|+|||||||.||+|++||.++..........+....+|++++++|++|.+++..
T Consensus       151 ------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  224 (514)
T d1amua_         151 ------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE  224 (514)
T ss_dssp             ------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred             ------ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc
Confidence                  01111122334567899999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      .+.++..|+++++..    .+....++.+....++.+..+|........                               
T Consensus       225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  273 (514)
T d1amua_         225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-------------------------------  273 (514)
T ss_dssp             HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------------------------------
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc-------------------------------
Confidence            999999999998876    567788889999999999998875432110                               


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC---CCCCCccC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGS  467 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~  467 (698)
                                       ....+++.+++||+++++++.+++..  ++.+++.||+||++.+++......   ...++.|.
T Consensus       274 -----------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~  334 (514)
T d1amua_         274 -----------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGA  334 (514)
T ss_dssp             -----------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBE
T ss_pred             -----------------cccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccc
Confidence                             01158999999999999999887755  688999999999998876655443   34567889


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc------cCCCceecCcEEEEecCCcEEEE
Q 005406          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIGLWLPGGRLKII  541 (698)
Q Consensus       468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f------~~~gw~~TGDlg~~~~~G~l~i~  541 (698)
                      +.++.++.+.| ++++..+.++   .|||+|+||+++.|||++++.+.+.|      +.+|||+|||+|++|+||+|+|+
T Consensus       335 ~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~  410 (514)
T d1amua_         335 PIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL  410 (514)
T ss_dssp             ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred             ceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE
Confidence            99999999999 6667777665   89999999999999999999998887      45789999999999999999999


Q ss_pred             ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR  618 (698)
Q Consensus       542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (698)
                      ||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++   ++.++|+|+++++.          +            
T Consensus       411 GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~----------~------------  467 (514)
T d1amua_         411 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI----------P------------  467 (514)
T ss_dssp             EEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------C------------
T ss_pred             ecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC----------C------------
Confidence            999999997 799999999999999999999999999543   56899999988742          1            


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406          619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE  672 (698)
Q Consensus       619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~  672 (698)
                           .++|+++++ .+|++|++|..|++++++|      +|++|||+|++|++
T Consensus       468 -----~~~l~~~~~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~  509 (514)
T d1amua_         468 -----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPE  509 (514)
T ss_dssp             -----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCC
T ss_pred             -----HHHHHHHHH-hhCCcccCceEEEEeCCCC------CCCCcChhHHhcCC
Confidence                 345566664 6799999999999999999      99999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.3e-70  Score=609.64  Aligned_cols=498  Identities=20%  Similarity=0.255  Sum_probs=410.7

Q ss_pred             CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (698)
Q Consensus        79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~  158 (698)
                      .|++++|+++|+++||++|+.+.   +      +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999763   2      56999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchH-----HHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceE
Q 005406          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN-----TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (698)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  233 (698)
                      +++|++++|++++++.+++.++++++++++++++.....     .........+.+...+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            999999999999999999999999999999999764322     1112222334443333332211            01


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHH
Q 005406          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (698)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (698)
                      ..+.++    ...+....+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.
T Consensus       164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~  239 (536)
T d1mdba_         164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS  239 (536)
T ss_dssp             EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred             cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence            222221    1222334456889999999999999999999999999999999888889999999999999999999987


Q ss_pred             H-HH-HHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406          314 N-QI-VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (698)
Q Consensus       314 ~-~~-~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (698)
                      . .+ ..+..|++++..+ +++..+...+++++++.+..+|..+..+.......                          
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  293 (536)
T d1mdba_         240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------------  293 (536)
T ss_dssp             SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------
T ss_pred             eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc--------------------------
Confidence            5 33 3445567766665 79999999999999999999999988776532211                          


Q ss_pred             CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-CCCCCccCCC
Q 005406          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPN  469 (698)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~  469 (698)
                                      ....++++.+++||+++++...+++...++......||.+|.+..+....... ...+++|.|+
T Consensus       294 ----------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~  357 (536)
T d1mdba_         294 ----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM  357 (536)
T ss_dssp             ----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred             ----------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence                            11125899999999999999999999999999999999999876555433322 4457899998


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEe
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ik  549 (698)
                      ++....+++.++++.++.++   .|||+++|+.++.||+++++.+...++.+|||+|||+|++++||+|+|+||+||+||
T Consensus       358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~  434 (536)
T d1mdba_         358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN  434 (536)
T ss_dssp             STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred             CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEE
Confidence            77666666657777666665   899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005406          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAE  626 (698)
Q Consensus       550 ls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  626 (698)
                      + +|++|+|.+||++|.+||+|.+|+|+|.+   .++.++|+|++.++.         .+                 .++
T Consensus       435 ~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~  487 (536)
T d1mdba_         435 R-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------AAE  487 (536)
T ss_dssp             C-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------HHH
T ss_pred             E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCC---------CC-----------------HHH
Confidence            6 89999999999999999999999999843   246789999987642         11                 344


Q ss_pred             HHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHH
Q 005406          627 MNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAIS  679 (698)
Q Consensus       627 l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~  679 (698)
                      |++++++..|+.|++|+.|++++++|      +|++|||+|++|+++|+++|.
T Consensus       488 l~~~l~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         488 LKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             HHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcCcCccEEEEECCCC------cCCCcCccHHHHHHHHHHHHh
Confidence            56666555799999999999999999      999999999999999988764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=7.9e-66  Score=569.43  Aligned_cols=490  Identities=18%  Similarity=0.213  Sum_probs=395.5

Q ss_pred             CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (698)
Q Consensus        78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA  157 (698)
                      ++||+++|+++|+++||++|+.+.   +.    .+++||+||++++.++|++|+++|+++||+|+|+++|+++|++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999875   32    26799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (698)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (698)
                      |+++|++++|+++.++++++.+++++++++++|++..... ...........+ ++.                     +.
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~-~i~---------------------~~  130 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGAR-IIF---------------------LG  130 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCCE-EEE---------------------HH
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhccccc-ccc---------------------ch
Confidence            9999999999999999999999999999999998865322 122222222222 222                     22


Q ss_pred             HHHhcC----CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccc--ccCCCcEEEEcCChhhHHH
Q 005406          238 QLQSQG----CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV--QFYPSDIYMSYLPLAHIYE  311 (698)
Q Consensus       238 ~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~~  311 (698)
                      ++...+    ...+......+++++++|+|||||||.||+|+++|+++.+.+......+  .....+++++.+|++|.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (503)
T d3cw9a1         131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG  210 (503)
T ss_dssp             HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred             hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence            222211    1122333456789999999999999999999999999998887766553  3456789999999999888


Q ss_pred             HHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (698)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (698)
                      ... .+.+...++.+++.+ +++..+...+..++++++..+|..+..+........                        
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  266 (503)
T d3cw9a1         211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------  266 (503)
T ss_dssp             HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC------------------------
T ss_pred             cccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccc------------------------
Confidence            876 455666676766665 899999999999999999999999887765322111                        


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCC
Q 005406          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN  469 (698)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  469 (698)
                                      .....++||.+++||+++++++..++...++..+.+.||+||++..+...........+.+.+.
T Consensus       267 ----------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~  330 (503)
T d3cw9a1         267 ----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS  330 (503)
T ss_dssp             ----------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred             ----------------ccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence                            1112258999999999999999999999999999999999999987776665555555555555


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCccEEEEeC-CCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeE
Q 005406          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG-PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (698)
Q Consensus       470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~i  548 (698)
                      +.....+.+ ..+...+.++   .|++++.+ +....||+++++.|.+.| .+|||+|||+|++|+||.|+++||+||+|
T Consensus       331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i  405 (503)
T d3cw9a1         331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (503)
T ss_dssp             CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred             cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence            555444443 4445455544   78777665 566788999999999999 78999999999999999999999999999


Q ss_pred             ecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHH
Q 005406          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLA  625 (698)
Q Consensus       549 kls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  625 (698)
                      |+ +|++|+|.+||++|.+||+|.+|+|+|.++   ++.++|+|++.+..        ..+                 .+
T Consensus       406 k~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~-----------------~~  459 (503)
T d3cw9a1         406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS-----------------AD  459 (503)
T ss_dssp             EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HH
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC--------CCC-----------------HH
Confidence            97 899999999999999999999999998543   46899999987642        111                 45


Q ss_pred             HHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406          626 EMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF  674 (698)
Q Consensus       626 ~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~  674 (698)
                      +|++++++.+|+.|++|+.|++++++|      +|++|||+|++|++++
T Consensus       460 ~l~~~~~~~~l~~~~~P~~i~~v~~~P------~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         460 ALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQV  502 (503)
T ss_dssp             HHHHHHHHSSSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCccEEEEECCCC------cCCCcCccHHHHHHhc
Confidence            566667667899999999999999999      9999999999999875